Query 046462
Match_columns 210
No_of_seqs 101 out of 466
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 12:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 6.5E-45 1.4E-49 298.1 17.6 177 5-185 2-187 (187)
2 COG4894 Uncharacterized conser 100.0 1.8E-37 3.8E-42 239.3 9.3 154 17-192 6-159 (159)
3 PF03803 Scramblase: Scramblas 99.6 1.4E-13 3E-18 115.2 20.4 169 17-192 22-220 (221)
4 COG4894 Uncharacterized conser 98.3 1.7E-06 3.8E-11 67.6 6.1 69 14-86 27-95 (159)
5 PF04525 Tub_2: Tubby C 2; In 97.8 0.00019 4.2E-09 58.6 9.2 72 14-88 36-113 (187)
6 KOG0621 Phospholipid scramblas 97.3 0.0071 1.5E-07 53.0 13.6 159 30-195 98-283 (292)
7 PF03803 Scramblase: Scramblas 96.5 0.04 8.7E-07 45.8 10.5 69 33-105 78-150 (221)
8 PF02974 Inh: Protease inhibit 63.9 35 0.00075 24.8 6.3 32 56-90 61-92 (99)
9 KOG0621 Phospholipid scramblas 58.3 60 0.0013 28.6 7.9 49 31-79 188-240 (292)
10 KOG3950 Gamma/delta sarcoglyca 55.3 13 0.00028 32.0 3.0 43 36-78 117-160 (292)
11 PF04790 Sarcoglycan_1: Sarcog 55.1 26 0.00056 30.4 5.0 20 56-75 117-137 (264)
12 PRK12816 flgG flagellar basal 54.6 18 0.00039 31.2 4.0 40 29-71 98-138 (264)
13 PRK12640 flgF flagellar basal 52.7 19 0.00041 30.8 3.7 40 29-71 83-123 (246)
14 PF15529 Toxin_49: Putative to 52.7 16 0.00035 26.4 2.8 20 31-50 30-49 (89)
15 PF13860 FlgD_ig: FlgD Ig-like 52.2 21 0.00045 24.8 3.3 17 58-74 28-44 (81)
16 PRK12817 flgG flagellar basal 50.9 25 0.00054 30.2 4.3 40 29-71 94-134 (260)
17 PRK12691 flgG flagellar basal 50.7 31 0.00067 29.6 4.8 40 29-71 98-138 (262)
18 PRK12694 flgG flagellar basal 50.2 23 0.0005 30.4 3.9 40 29-71 98-138 (260)
19 PRK12818 flgG flagellar basal 49.2 27 0.00058 30.0 4.2 39 29-70 98-137 (256)
20 TIGR02488 flgG_G_neg flagellar 48.5 24 0.00051 30.2 3.7 40 29-71 96-136 (259)
21 PF01167 Tub: Tub family; Int 46.8 92 0.002 26.6 7.1 84 68-153 8-115 (246)
22 PRK12693 flgG flagellar basal 44.1 37 0.00079 29.0 4.3 40 29-71 98-138 (261)
23 PF07680 DoxA: TQO small subun 43.3 26 0.00056 27.3 2.9 25 54-78 46-70 (133)
24 PF09008 Head_binding: Head bi 43.2 32 0.00069 25.9 3.2 43 24-74 63-105 (114)
25 COG4787 FlgF Flagellar basal b 39.5 29 0.00063 29.4 2.8 54 13-70 67-121 (251)
26 PRK15393 NUDIX hydrolase YfcD; 39.4 84 0.0018 25.1 5.5 59 31-89 10-73 (180)
27 PF08269 Cache_2: Cache domain 39.2 5.7 0.00012 28.3 -1.3 42 27-70 52-94 (95)
28 KOG4037 Photoreceptor synaptic 37.8 68 0.0015 26.4 4.6 39 3-48 67-107 (240)
29 TIGR03784 marine_sortase sorta 36.5 49 0.0011 26.7 3.6 15 54-68 110-124 (174)
30 PF12119 DUF3581: Protein of u 36.4 1.7E+02 0.0038 24.6 6.9 95 55-153 84-206 (218)
31 PRK12641 flgF flagellar basal 36.2 49 0.0011 28.3 3.8 38 29-70 81-119 (252)
32 TIGR02171 Fb_sc_TIGR02171 Fibr 35.4 3.9E+02 0.0084 27.5 10.2 117 39-173 318-442 (912)
33 COG4998 Predicted endonuclease 35.1 64 0.0014 26.2 4.0 35 131-174 22-56 (209)
34 PRK12692 flgG flagellar basal 35.0 47 0.001 28.6 3.5 39 29-70 98-137 (262)
35 smart00634 BID_1 Bacterial Ig- 34.0 1.2E+02 0.0026 21.2 5.1 40 33-73 24-69 (92)
36 PF06891 P2_Phage_GpR: P2 phag 33.5 1E+02 0.0022 23.7 4.9 43 162-205 49-99 (135)
37 cd06166 Sortase_D_5 Sortase D 33.4 60 0.0013 24.4 3.5 21 54-74 66-86 (126)
38 PRK12643 flgF flagellar basal 33.1 41 0.0009 28.1 2.8 38 29-70 83-121 (209)
39 COG4786 FlgG Flagellar basal b 32.8 53 0.0011 28.6 3.4 40 29-71 98-138 (265)
40 PF08909 DUF1854: Domain of un 31.8 1.4E+02 0.0031 23.2 5.3 52 16-68 59-112 (133)
41 cd05828 Sortase_D_4 Sortase D 31.7 58 0.0012 24.5 3.2 23 53-75 62-84 (127)
42 PF12690 BsuPI: Intracellular 31.2 37 0.00081 23.9 1.9 17 32-48 27-43 (82)
43 TIGR02150 IPP_isom_1 isopenten 31.0 1.1E+02 0.0024 23.7 4.8 57 33-89 1-63 (158)
44 PRK12690 flgF flagellar basal 30.5 65 0.0014 27.3 3.6 38 29-70 84-122 (238)
45 PF05593 RHS_repeat: RHS Repea 28.4 1.3E+02 0.0028 17.6 4.4 13 36-48 1-13 (38)
46 PF11141 DUF2914: Protein of u 26.4 1E+02 0.0022 20.7 3.3 21 53-73 42-62 (66)
47 PRK06655 flgD flagellar basal 26.1 1E+02 0.0022 26.0 4.0 45 27-74 101-145 (225)
48 PF10984 DUF2794: Protein of u 25.1 1.5E+02 0.0032 21.3 4.0 35 33-67 38-73 (85)
49 PRK12636 flgG flagellar basal 25.1 88 0.0019 26.8 3.5 39 29-71 97-136 (263)
50 PF06903 VirK: VirK protein; 24.8 2.9E+02 0.0063 20.4 5.9 10 6-15 22-31 (100)
51 TIGR02527 dot_icm_IcmQ Dot/Icm 23.8 40 0.00087 27.4 1.1 36 43-79 121-156 (182)
52 PRK12689 flgF flagellar basal 23.7 1E+02 0.0022 26.4 3.6 39 29-71 90-129 (253)
53 PRK06803 flgE flagellar hook p 23.4 1.8E+02 0.0038 26.8 5.3 39 29-70 78-117 (402)
54 PRK12813 flgD flagellar basal 23.3 91 0.002 26.3 3.2 18 57-74 126-143 (223)
55 PF09475 Dot_icm_IcmQ: Dot/Icm 22.6 29 0.00062 28.2 0.0 29 51-79 128-156 (179)
56 cd03676 Nudix_hydrolase_3 Memb 22.2 3.9E+02 0.0085 20.9 7.2 59 32-90 6-73 (180)
57 smart00800 uDENN Domain always 21.9 84 0.0018 22.0 2.4 12 33-44 71-82 (89)
58 COG5436 Predicted integral mem 21.7 2.2E+02 0.0049 22.9 4.8 41 32-76 69-110 (182)
59 PF00384 Molybdopterin: Molybd 20.6 1E+02 0.0022 27.5 3.2 30 162-191 156-186 (432)
60 PRK10523 lipoprotein involved 20.4 1.9E+02 0.0042 24.6 4.6 26 41-68 82-107 (234)
61 PRK00122 rimM 16S rRNA-process 20.2 2.6E+02 0.0057 22.1 5.2 16 33-48 108-123 (172)
62 PRK13828 rimM 16S rRNA-process 20.0 2.7E+02 0.0058 21.9 5.1 17 32-48 87-103 (161)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=6.5e-45 Score=298.15 Aligned_cols=177 Identities=36% Similarity=0.587 Sum_probs=108.4
Q ss_pred eeeecCccCCcceEEEEEEeeeeecCCCEEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEEEEecCCCcccceE
Q 046462 5 AIVDERFCFEEETHLTVHKTSVFFPGDGFIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLTLLRKKPSLHQRWE 84 (210)
Q Consensus 5 ~vV~~~~~~~~~~~l~v~~k~~~~~~d~f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~ 84 (210)
+||+++||+++|++|+|++|.+++++++|+|+|++|+++|+|+| ++.+++++++.|+|++|+||++|++|.++++++|+
T Consensus 2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g-~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~ 80 (187)
T PF04525_consen 2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDG-GKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWE 80 (187)
T ss_dssp -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE---SCTTBTTEEEEE-TTS-EEEEEE--------EEE
T ss_pred cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEE-ecccCCCCEEEEECCCCCEEEEEEeeecccceEEE
Confidence 68999999999999999999988999999999999999999999 34689999999999999999999999999999999
Q ss_pred EEecCCCCCCceEEEEEeecccCC-ceEEEEEeC--------CCCceEEEEeeecCceEEEEeCCCCCceEEEEEeeccC
Q 046462 85 GYLGEKMEDQEPIFSVCRSSIIGR-SSVVAHVFG--------EPSEEYRIEGSFSQRCCTIYNASSSKERVAKIKRKVDP 155 (210)
Q Consensus 85 v~~~~~~~~~~~l~~ikk~~~~~~-~~~~v~~~~--------~~~~~~~v~G~~~~~~~~I~~~~~~g~~VA~V~rk~~~ 155 (210)
+|++++.++++++|+||+++.+.. +++.+++.+ .+.++|+|+||||+++|+|++. +|++||+|+|++.
T Consensus 81 i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~--~g~~VA~i~rk~~- 157 (187)
T PF04525_consen 81 IYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDS--GGRVVAEISRKYS- 157 (187)
T ss_dssp EEETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEEC--C--EEEEEEE----
T ss_pred EEECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEc--CCCEEEEEecccc-
Confidence 999987666679999999966542 345555542 1556899999999999999965 3999999999887
Q ss_pred CCceeeeceeEEEEEeCCCCHHHHHHHHHH
Q 046462 156 LNNVTLGKDVFLLCLEPGFDGAFAMGLVLI 185 (210)
Q Consensus 156 ~~~~~~~~dtY~l~V~pgvD~ali~alvv~ 185 (210)
.+.+++|+|+|.|+|+||+|++||+|||||
T Consensus 158 ~k~~~~~~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 158 SKKWFSGRDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp -------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred eeeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence 567899999999999999999999999987
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=239.32 Aligned_cols=154 Identities=22% Similarity=0.314 Sum_probs=140.7
Q ss_pred eEEEEEEeeeeecCCCEEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEEEEecCCCcccceEEEecCCCCCCce
Q 046462 17 THLTVHKTSVFFPGDGFIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLTLLRKKPSLHQRWEGYLGEKMEDQEP 96 (210)
Q Consensus 17 ~~l~v~~k~~~~~~d~f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~v~~~~~~~~~~~ 96 (210)
.+|.++||. ++.+|+|.|+|.+|+.+|+|+| ++|++++.++|.|++|.+|.+|++|+++++|+|||-.|++ -
T Consensus 6 ~tl~mkQk~-~~~gd~f~I~d~dgE~af~VeG--s~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g-----~ 77 (159)
T COG4894 6 ITLFMKQKM-FSFGDAFHIYDRDGEEAFKVEG--SFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGG-----T 77 (159)
T ss_pred HhHhhhhhh-hhcccceEEECCCCcEEEEEee--eEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCCC-----C
Confidence 356778886 7888999999999999999999 8899999999999999999999999999999999999986 5
Q ss_pred EEEEEeecccCCceEEEEEeCCCCceEEEEeeecCceEEEEeCCCCCceEEEEEeeccCCCceeeeceeEEEEEeCCCCH
Q 046462 97 IFSVCRSSIIGRSSVVAHVFGEPSEEYRIEGSFSQRCCTIYNASSSKERVAKIKRKVDPLNNVTLGKDVFLLCLEPGFDG 176 (210)
Q Consensus 97 l~~ikk~~~~~~~~~~v~~~~~~~~~~~v~G~~~~~~~~I~~~~~~g~~VA~V~rk~~~~~~~~~~~dtY~l~V~pgvD~ 176 (210)
.|.++|+..|.+.++.+ ++.+|+++||+|+.+|++.+| ++++|+|+||| ++|+|||+|+|+|+.|.
T Consensus 78 ~~~vrKK~tf~Rdk~e~-----d~~~~eihGNi~d~efkl~dg---~~~~aeVsKkw------f~~rdTY~l~vapde~a 143 (159)
T COG4894 78 VCEVRKKVTFSRDKFEI-----DGLNWEIHGNIWDDEFKLTDG---ENVRAEVSKKW------FSWRDTYHLQVAPDEDA 143 (159)
T ss_pred EEEEEEEEEEEeeeEEE-----cCCCeEEecceeceEEEEecC---Cceehhheeee------EeccceEEEEEcCchhh
Confidence 99999987665545544 677899999999999999999 78999999998 99999999999999999
Q ss_pred HHHHHHHHHHchhccC
Q 046462 177 AFAMGLVLILDQMYGD 192 (210)
Q Consensus 177 ali~alvv~lD~i~~~ 192 (210)
++|+|++||+|++.++
T Consensus 144 ~lii~i~VaLD~v~~~ 159 (159)
T COG4894 144 LLIIAIAVALDMVLYN 159 (159)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999763
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.62 E-value=1.4e-13 Score=115.20 Aligned_cols=169 Identities=17% Similarity=0.182 Sum_probs=124.6
Q ss_pred eEEEEEEeeeee-------cCCCEEEEcCCCCEEEEEeecCCC-----CC--CCCeEEEEcCCCCeEEEEEecCCCc---
Q 046462 17 THLTVHKTSVFF-------PGDGFIVYDPKGELILRFDSYGPD-----SQ--PKDELVLMEASGKCLLTLLRKKPSL--- 79 (210)
Q Consensus 17 ~~l~v~~k~~~~-------~~d~f~I~D~~G~~vf~V~g~~~~-----~s--~~~~~~l~D~~G~~L~~i~~k~~s~--- 79 (210)
-.+.|+|+...+ ..+.|.|+|++|+.+|.+...... +. .+=+..|+|+.|++++++++..-..
T Consensus 22 ~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~ 101 (221)
T PF03803_consen 22 DQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCC 101 (221)
T ss_pred CEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceecc
Confidence 345677776532 235799999999999988653221 11 2335688999999999999876332
Q ss_pred ---ccceEEEecCCCCCCceEEEEEeecccCCceEEEEEeCCCCceEEEEee------ecCceEEEEeCCCCCceEEEEE
Q 046462 80 ---HQRWEGYLGEKMEDQEPIFSVCRSSIIGRSSVVAHVFGEPSEEYRIEGS------FSQRCCTIYNASSSKERVAKIK 150 (210)
Q Consensus 80 ---~~~~~v~~~~~~~~~~~l~~ikk~~~~~~~~~~v~~~~~~~~~~~v~G~------~~~~~~~I~~~~~~g~~VA~V~ 150 (210)
..+.+|+.+.+ +++.+|+.+..+..++++|.-.. ...-+.|+|. +++..|.|++. +|+.||+|+
T Consensus 102 ~~~~~~~~V~~p~g----~~iG~I~q~~~~~~~~f~I~d~~-~~~~~~I~gp~~~~~~~~~~~F~I~~~--~~~~vg~I~ 174 (221)
T PF03803_consen 102 PCCLQEMEVESPPG----NLIGSIRQPFSCCRPNFDIFDAN-GNPIFTIKGPCCCCSCCCDWEFEIKDP--NGQEVGSIT 174 (221)
T ss_pred cccceeEEEecCCC----cEEEEEEEcCcccceEEEEEECC-CceEEEEeCCcceeccccceeeeeecc--cCcEEEEEE
Confidence 35666766543 69999998754434466664432 3456888887 45789999997 389999999
Q ss_pred eeccCC-CceeeeceeEEEEEeCCCCH---HHHHHHHHHHchhccC
Q 046462 151 RKVDPL-NNVTLGKDVFLLCLEPGFDG---AFAMGLVLILDQMYGD 192 (210)
Q Consensus 151 rk~~~~-~~~~~~~dtY~l~V~pgvD~---ali~alvv~lD~i~~~ 192 (210)
|+|++. +..+...|+|.|+..+..|. |+++|.++.||.++-+
T Consensus 175 k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~Fe 220 (221)
T PF03803_consen 175 KKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMYFE 220 (221)
T ss_pred EecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhhhc
Confidence 999654 33567899999999998876 8899999999998754
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.7e-06 Score=67.58 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=59.2
Q ss_pred CcceEEEEEEeeeeecCCCEEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEEEEecCCCcccceEEE
Q 046462 14 EEETHLTVHKTSVFFPGDGFIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLTLLRKKPSLHQRWEGY 86 (210)
Q Consensus 14 ~~~~~l~v~~k~~~~~~d~f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~v~ 86 (210)
..+.++.|.-+. +..+|-|+|+|+.|.+++.++. +++++.+++.|.|++|+ ++.+++|...++++|++-
T Consensus 27 dgE~af~VeGs~-f~i~dtlti~Da~G~~l~~i~~--kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d 95 (159)
T COG4894 27 DGEEAFKVEGSF-FSIGDTLTITDASGKTLVSIEQ--KLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEID 95 (159)
T ss_pred CCcEEEEEeeeE-EeeCceEEEEecCCCChHHHHH--HHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEEc
Confidence 457788877554 5667889999999999999999 89999999999999999 888988876668888754
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=97.77 E-value=0.00019 Score=58.57 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=41.3
Q ss_pred CcceEEEEEE-eeeeecCCCEEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCC----eEEEEEec-CCCcccceEEEe
Q 046462 14 EEETHLTVHK-TSVFFPGDGFIVYDPKGELILRFDSYGPDSQPKDELVLMEASGK----CLLTLLRK-KPSLHQRWEGYL 87 (210)
Q Consensus 14 ~~~~~l~v~~-k~~~~~~d~f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~----~L~~i~~k-~~s~~~~~~v~~ 87 (210)
+....|+|.. +. +..++...|+|++|++++++.. +.+++.++..++++.+. +|++|+++ .+..++...+|.
T Consensus 36 ~G~~vf~V~g~~~-~s~~~~~~l~D~~G~~L~~i~~--k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~ 112 (187)
T PF04525_consen 36 NGNVVFRVDGGKF-FSIGKKRTLMDASGNPLFTIRR--KLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFL 112 (187)
T ss_dssp TS-EEEEEE--SC-TTBTTEEEEE-TTS-EEEEEE----------EEEEEETT---GGGEEEEEE----------EEEEE
T ss_pred CCCEEEEEEEecc-cCCCCEEEEECCCCCEEEEEEe--eecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEE
Confidence 4578899988 54 5667789999999999999999 88999999999999998 59999999 344455556666
Q ss_pred c
Q 046462 88 G 88 (210)
Q Consensus 88 ~ 88 (210)
+
T Consensus 113 ~ 113 (187)
T PF04525_consen 113 P 113 (187)
T ss_dssp T
T ss_pred e
Confidence 5
No 6
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=97.35 E-value=0.0071 Score=52.99 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=99.5
Q ss_pred CCCEEEEcCCCCEEEEEeecCC-----C--CCCCCeEEEEcCCCCeEEEEEecCCCccc--------ceEEEecCCCCCC
Q 046462 30 GDGFIVYDPKGELILRFDSYGP-----D--SQPKDELVLMEASGKCLLTLLRKKPSLHQ--------RWEGYLGEKMEDQ 94 (210)
Q Consensus 30 ~d~f~I~D~~G~~vf~V~g~~~-----~--~s~~~~~~l~D~~G~~L~~i~~k~~s~~~--------~~~v~~~~~~~~~ 94 (210)
.+.|.|.|.+|+.+|.+-..+. . ..-+=...++|.-|++++++++...+... ..++-.+. .
T Consensus 98 ~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~----~ 173 (292)
T KOG0621|consen 98 ANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPP----M 173 (292)
T ss_pred CcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcCC----C
Confidence 3569999999998885533111 0 12344678999999999999998754332 11222211 1
Q ss_pred ceEEEEEeecccCCceEEEEEeCCCC-ceEEEEee-------ecCceEEEEeCCCCCceEEEEEeeccCC-Cceeeecee
Q 046462 95 EPIFSVCRSSIIGRSSVVAHVFGEPS-EEYRIEGS-------FSQRCCTIYNASSSKERVAKIKRKVDPL-NNVTLGKDV 165 (210)
Q Consensus 95 ~~l~~ikk~~~~~~~~~~v~~~~~~~-~~~~v~G~-------~~~~~~~I~~~~~~g~~VA~V~rk~~~~-~~~~~~~dt 165 (210)
-.+-+|........+++.| -.... ..+.|+|. +-+..|.+...+ .+..|++|.|+|.+. .+.+...|+
T Consensus 174 ~~lG~v~q~~~~~~~~f~i--~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d-~~~~vg~I~k~w~g~~rE~fTDad~ 250 (292)
T KOG0621|consen 174 GLLGKVLQTWGCVNPNFHL--WDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTD-NGRIVGSISRKWAGLVREAFTDADT 250 (292)
T ss_pred ceEEEEEEeeccccceEEE--EcccceeEEEEEcCceeEEEeecCcceeEEEcC-CCeEEEEEeecccchhhhheeccce
Confidence 2444443332122223333 22222 23566655 333444444432 588899999999764 466778999
Q ss_pred EEEEEeCCCCH---HHHHHHHHHHchhccCCCC
Q 046462 166 FLLCLEPGFDG---AFAMGLVLILDQMYGDDDD 195 (210)
Q Consensus 166 Y~l~V~pgvD~---ali~alvv~lD~i~~~~~~ 195 (210)
|.|...-..|. ++++|.+.-||.+.-+.+.
T Consensus 251 f~v~FPldLdvk~kavllga~flID~~~Fe~~~ 283 (292)
T KOG0621|consen 251 FVVHFPLDLDVKLKALLLGSTFLIDYMSFESRG 283 (292)
T ss_pred eeEecCCcCCHHHHhhhhhheeeEEEEEEecCC
Confidence 99998877776 7899999999988777664
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=96.46 E-value=0.04 Score=45.82 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=53.6
Q ss_pred EEEEcCCCCEEEEEeecCCCCC----CCCeEEEEcCCCCeEEEEEecCCCcccceEEEecCCCCCCceEEEEEeecc
Q 046462 33 FIVYDPKGELILRFDSYGPDSQ----PKDELVLMEASGKCLLTLLRKKPSLHQRWEGYLGEKMEDQEPIFSVCRSSI 105 (210)
Q Consensus 33 f~I~D~~G~~vf~V~g~~~~~s----~~~~~~l~D~~G~~L~~i~~k~~s~~~~~~v~~~~~~~~~~~l~~ikk~~~ 105 (210)
..|+|.+|+.+++++-..+... ...+..+.++.|++|-+|+++...+.++|+|+..++ +++++|+.+.+
T Consensus 78 ~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~----~~~~~I~gp~~ 150 (221)
T PF03803_consen 78 MHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANG----NPIFTIKGPCC 150 (221)
T ss_pred EEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCC----ceEEEEeCCcc
Confidence 4688999999999988322111 246778889999999999998777889999999874 58888887643
No 8
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=63.86 E-value=35 Score=24.85 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCeEEEEEecCCCcccceEEEecCC
Q 046462 56 KDELVLMEASGKCLLTLLRKKPSLHQRWEGYLGEK 90 (210)
Q Consensus 56 ~~~~~l~D~~G~~L~~i~~k~~s~~~~~~v~~~~~ 90 (210)
++.+.|+|++|+.|+++.+.. -..|+....++
T Consensus 61 gd~l~L~d~~G~~v~~f~~~~---~g~~~g~~~~g 92 (99)
T PF02974_consen 61 GDGLVLTDADGSVVAFFYRSG---DGRFEGQTPDG 92 (99)
T ss_dssp TTEEEEE-TTS-EEEEEEEEC---TTEEEEEECCC
T ss_pred CCEEEEECCCCCEEEEEEccC---CeeEEeEcCCC
Confidence 467999999999999988764 34677777754
No 9
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=58.28 E-value=60 Score=28.61 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=29.2
Q ss_pred CCEEEEcCCCCEEEEEeecC-CC---CCCCCeEEEEcCCCCeEEEEEecCCCc
Q 046462 31 DGFIVYDPKGELILRFDSYG-PD---SQPKDELVLMEASGKCLLTLLRKKPSL 79 (210)
Q Consensus 31 d~f~I~D~~G~~vf~V~g~~-~~---~s~~~~~~l~D~~G~~L~~i~~k~~s~ 79 (210)
-.|.|.|..++.+|+|+|-. -. .+......++..+|..+..|-++...+
T Consensus 188 ~~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~ 240 (292)
T KOG0621|consen 188 PNFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGL 240 (292)
T ss_pred ceEEEEcccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccch
Confidence 35777777777777777721 01 123444666666677777776665433
No 10
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=55.25 E-value=13 Score=32.05 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=23.6
Q ss_pred EcCCCCEEEEEee-cCCCCCCCCeEEEEcCCCCeEEEEEecCCC
Q 046462 36 YDPKGELILRFDS-YGPDSQPKDELVLMEASGKCLLTLLRKKPS 78 (210)
Q Consensus 36 ~D~~G~~vf~V~g-~~~~~s~~~~~~l~D~~G~~L~~i~~k~~s 78 (210)
+|++|++.-+..= ..++=-..+++.+.|.+|++||+..+.-..
T Consensus 117 rn~~g~v~~~l~lgp~~ve~~~~~Fev~~~dgk~LFsad~dEv~ 160 (292)
T KOG3950|consen 117 RNPNGKVTGQLILGPKKVEAQCKRFEVNDVDGKLLFSADEDEVV 160 (292)
T ss_pred cCCCCceeeeEEechHHHhhhhceeEEecCCCcEEEEeccceeE
Confidence 4556666544321 111112355677777777777777665543
No 11
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=55.06 E-value=26 Score=30.40 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=10.0
Q ss_pred CCeEEEEcC-CCCeEEEEEec
Q 046462 56 KDELVLMEA-SGKCLLTLLRK 75 (210)
Q Consensus 56 ~~~~~l~D~-~G~~L~~i~~k 75 (210)
.+.+.|.|+ +|++||+-.+.
T Consensus 117 ~~~F~V~d~~~g~~lFsad~~ 137 (264)
T PF04790_consen 117 SNRFEVKDPRDGKTLFSADRP 137 (264)
T ss_pred cCeEEEEcCCCCceEEEecCC
Confidence 444555555 55555555443
No 12
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=54.61 E-value=18 Score=31.21 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=32.4
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLT 71 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~ 71 (210)
.+++ |.|.+++|..+|+=+| . |++...-.|.+++|.+|+-
T Consensus 98 ~G~GFF~V~~~~G~~~YTR~G--~-F~~d~~G~Lvt~~G~~vl~ 138 (264)
T PRK12816 98 EGEGFFKILMPDGTYAYTRDG--S-FKIDANGQLVTSNGYRLLP 138 (264)
T ss_pred CCCcEEEEEcCCCCeEEeeCC--C-eeECCCCCEECCCCCEecc
Confidence 4556 7998899998899888 4 5666777799999999984
No 13
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=52.71 E-value=19 Score=30.82 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=30.9
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLT 71 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~ 71 (210)
.+++ |.|.+++|+..|+=+| . |.+...-.|.+++|.+|+-
T Consensus 83 ~G~GFF~V~~~~G~~~yTR~G--~-F~~d~~G~Lvt~~G~~vlg 123 (246)
T PRK12640 83 QGDGWLAVQAPDGSEAYTRNG--S-LQVDANGQLRTANGLPVLG 123 (246)
T ss_pred CCCcEEEEEcCCCCEEEEeCC--C-eeECCCCCEEcCCCCCccC
Confidence 4555 8888889988899888 4 5666666788888888773
No 14
>PF15529 Toxin_49: Putative toxin 49
Probab=52.67 E-value=16 Score=26.44 Aligned_cols=20 Identities=25% Similarity=0.674 Sum_probs=16.2
Q ss_pred CCEEEEcCCCCEEEEEeecC
Q 046462 31 DGFIVYDPKGELILRFDSYG 50 (210)
Q Consensus 31 d~f~I~D~~G~~vf~V~g~~ 50 (210)
.+|++||++|.++-+|++.|
T Consensus 30 t~Y~tY~~~G~~~kr~r~~G 49 (89)
T PF15529_consen 30 TSYTTYDEDGMIVKRYRGSG 49 (89)
T ss_pred cceeEEcCCCcEeEEeeccC
Confidence 46999999999777777744
No 15
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=52.17 E-value=21 Score=24.80 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=10.9
Q ss_pred eEEEEcCCCCeEEEEEe
Q 046462 58 ELVLMEASGKCLLTLLR 74 (210)
Q Consensus 58 ~~~l~D~~G~~L~~i~~ 74 (210)
++.|+|++|+.+-++.-
T Consensus 28 ~v~I~d~~G~~V~t~~~ 44 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTISL 44 (81)
T ss_dssp EEEEEETTS-EEEEEEE
T ss_pred EEEEEcCCCCEEEEEEc
Confidence 67777777777766653
No 16
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=50.86 E-value=25 Score=30.17 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=31.4
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLT 71 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~ 71 (210)
.+++ |.|.+++|..+|+=+| . |.+...-.|.+++|.+|+.
T Consensus 94 ~G~GfF~V~~~~G~~~yTR~G--~-F~~d~~G~Lvt~~G~~vl~ 134 (260)
T PRK12817 94 DGEGFFRVIMADGTYAYTRAG--N-FNIDSNGMLVDDNGNRLEI 134 (260)
T ss_pred CCCcEEEEEcCCCCeEEEeCC--c-eeECCCCCEEcCCCCEEEe
Confidence 4556 8898899988899888 4 5666666688999999884
No 17
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=50.73 E-value=31 Score=29.56 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=32.0
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLT 71 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~ 71 (210)
.+++ |.|.+++|+.+|+=+| . |.+...-.|.+++|.+|+-
T Consensus 98 ~G~GfF~V~~~~G~~~yTR~G--~-F~~d~~G~Lvt~~G~~vl~ 138 (262)
T PRK12691 98 QGRGYFQIQLPDGETAYTRAG--A-FNRSADGQIVTSDGYPVQP 138 (262)
T ss_pred cCCcEEEEEcCCCCEEEeeCC--C-eeECCCCCEECCCCCEeEe
Confidence 4555 7888889988899888 4 5666777799999999984
No 18
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=50.19 E-value=23 Score=30.41 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=32.0
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLT 71 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~ 71 (210)
.+++ |.|.+++|..+|+=+| . |.+...-.|.+++|.+|+-
T Consensus 98 ~G~GfF~V~~~~G~~~yTR~G--~-F~~d~~G~Lvt~~G~~Vl~ 138 (260)
T PRK12694 98 NGQGFFQVLMPDGTTAYTRDG--S-FQTNAQGQLVTSSGYPLQP 138 (260)
T ss_pred cCCcEEEEEcCCCCeEEeeCC--C-ceECCCCCEECCCCCEecc
Confidence 4566 7898899988899888 4 5667777789999999885
No 19
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=49.17 E-value=27 Score=29.96 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=29.8
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLL 70 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~ 70 (210)
.+++ |.|.+++|+..|+=+| . |.+...-.|.+++|.+|+
T Consensus 98 ~G~GFF~V~~~~G~~~YTR~G--~-F~~d~~G~Lvt~~G~~vl 137 (256)
T PRK12818 98 QGRGFFTVERNAGNNYYTRDG--H-FHVDTQGYLVNDSGYYVL 137 (256)
T ss_pred CCCceEEEEcCCCCeEEeeCC--C-eeECCCCCEEcCCCCEEe
Confidence 4556 8888888988899888 4 456566668888888887
No 20
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=48.45 E-value=24 Score=30.24 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=31.6
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLT 71 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~ 71 (210)
.+++ |.|.+++|+.+|+=+| . |++...-.|.+++|.+|+-
T Consensus 96 ~G~GfF~V~~~~g~~~yTR~G--~-F~~d~~G~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 96 EGEGFFQVLMPDGTTAYTRDG--A-FKINAEGQLVTSNGYPLQP 136 (259)
T ss_pred cCCcEEEEEcCCCCeEEeeCC--c-eEECCCCCEECCCCCEecC
Confidence 4556 7888889988899888 4 5666777789999999883
No 21
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=46.85 E-value=92 Score=26.58 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=46.6
Q ss_pred eEEEEEecC--C--CcccceEEEecCCCCCCceEEEEEeecccCCceEEEEEeCC----CCc--eEEEEeeecCceEEEE
Q 046462 68 CLLTLLRKK--P--SLHQRWEGYLGEKMEDQEPIFSVCRSSIIGRSSVVAHVFGE----PSE--EYRIEGSFSQRCCTIY 137 (210)
Q Consensus 68 ~L~~i~~k~--~--s~~~~~~v~~~~~~~~~~~l~~ikk~~~~~~~~~~v~~~~~----~~~--~~~v~G~~~~~~~~I~ 137 (210)
.-+.|++.. + .+.+.|..|..+.. ++.|...||..--+.+.+-|++... ... -=.|+.||++.+|.||
T Consensus 8 vqC~I~R~k~g~~~~lyp~y~l~l~~~~--~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT~F~iy 85 (246)
T PF01167_consen 8 VQCFIRRDKSGLTRGLYPGYYLYLEGEN--GKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGTEFTIY 85 (246)
T ss_dssp EEEEEEEESTTCCCT---EEEEEEESTT--SEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSSEEEEE
T ss_pred EEEEEEEECCCCCcccCcEeEeccccCC--CcEEEeeeecccCCCcceEEecCCCccccCCCceeeeeccccceeEEEEE
Confidence 345775543 2 35678888886322 3677777776333334555554321 122 2367899999999999
Q ss_pred eCC--CC------------CceEEEEEeec
Q 046462 138 NAS--SS------------KERVAKIKRKV 153 (210)
Q Consensus 138 ~~~--~~------------g~~VA~V~rk~ 153 (210)
+.. .. ...+|.|.-+.
T Consensus 86 D~g~~~~~~~~~~~~~~~~r~eLa~V~Ye~ 115 (246)
T PF01167_consen 86 DNGPNPKKSKSISPREPQIRRELAAVSYET 115 (246)
T ss_dssp ESSB-CCCSTCCTSCCSSB--EEEEEEEEE
T ss_pred CCCCCCccccccCcCcCcCcceEEEEEEEe
Confidence 973 11 13677777765
No 22
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=44.11 E-value=37 Score=29.04 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=31.6
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLT 71 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~ 71 (210)
.+++ |.|.+++|...|+=+| . |.+...-.|.+++|.+|+-
T Consensus 98 ~G~GfF~v~~~~G~~~yTR~G--~-F~~d~~G~Lvt~~G~~vl~ 138 (261)
T PRK12693 98 EGQGFFQVQLPDGTIAYTRDG--S-FKLDQDGQLVTSGGYPLQP 138 (261)
T ss_pred CCCcEEEEEcCCCCeEEeeCC--C-eeECCCCCEECCCCCEEee
Confidence 4556 7888889988899888 4 5666667789999999984
No 23
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=43.32 E-value=26 Score=27.29 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCCCeEEEEEecCCC
Q 046462 54 QPKDELVLMEASGKCLLTLLRKKPS 78 (210)
Q Consensus 54 s~~~~~~l~D~~G~~L~~i~~k~~s 78 (210)
++--+..|.|.+|+.+++...+.++
T Consensus 46 sfl~~i~l~d~~g~vv~~~~~~~L~ 70 (133)
T PF07680_consen 46 SFLIGIQLKDSTGHVVLNWDQEKLS 70 (133)
T ss_pred ceeeEEEEECCCCCEEEEeCHHHhh
Confidence 5667899999999999999887654
No 24
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=43.17 E-value=32 Score=25.88 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=25.0
Q ss_pred eeeeecCCCEEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEEEEe
Q 046462 24 TSVFFPGDGFIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLTLLR 74 (210)
Q Consensus 24 k~~~~~~d~f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~i~~ 74 (210)
..+....++|.+++.+ .+.-|... +....++|++|..+|.+-.
T Consensus 63 QPi~iN~gg~~~y~gq--~a~~vt~~------~hSMAv~d~~g~q~Fy~pn 105 (114)
T PF09008_consen 63 QPIIINKGGFPVYNGQ--IAKFVTVP------GHSMAVYDANGQQQFYFPN 105 (114)
T ss_dssp SSEEE-TTS-EEETTE--E--EEESS------SEEEEEE-TTS-EEEEESE
T ss_pred CCEEEccCCceEEccc--eeEEEEcc------CceEEEEeCCCcEEEeecc
Confidence 3446667889998765 44444441 2348899999999998743
No 25
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=39.52 E-value=29 Score=29.43 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=33.5
Q ss_pred CCcceEEEEEEeeeeecCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEE
Q 046462 13 FEEETHLTVHKTSVFFPGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLL 70 (210)
Q Consensus 13 ~~~~~~l~v~~k~~~~~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~ 70 (210)
++.+..+|=+.--...-+|+ +.|.|++|+..|+=.|. +++.... ++..+|.|++
T Consensus 67 spG~l~~TgR~LDvaiq~DGwlaVq~~dG~EaYTRnG~---~qI~a~g-~lTiqg~pVi 121 (251)
T COG4787 67 SPGSLDYTGRPLDVAIQGDGWLAVQDADGSEAYTRNGN---IQIDATG-QLTIQGHPVI 121 (251)
T ss_pred CCccccccCCcceEEEccCceEEEEcCCCcchheecCc---eEECccc-ceecCCCeee
Confidence 34444444333332334555 89999999999998884 3444444 5556666665
No 26
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=39.36 E-value=84 Score=25.14 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=36.6
Q ss_pred CCEEEEcCCCCEEEEEe---ecC-CCCCCCCeEEEEcCCCCeEEEEEecCCC-cccceEEEecC
Q 046462 31 DGFIVYDPKGELILRFD---SYG-PDSQPKDELVLMEASGKCLLTLLRKKPS-LHQRWEGYLGE 89 (210)
Q Consensus 31 d~f~I~D~~G~~vf~V~---g~~-~~~s~~~~~~l~D~~G~~L~~i~~k~~s-~~~~~~v~~~~ 89 (210)
.=+.|+|++|+++-.+. .+. .++...--..|+|.+|+.|+.=|...-. +...|+..-||
T Consensus 10 e~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG 73 (180)
T PRK15393 10 EWVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGG 73 (180)
T ss_pred eEEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCC
Confidence 34899999999999872 111 2344555677889999888743322211 23456655554
No 27
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=39.19 E-value=5.7 Score=28.26 Aligned_cols=42 Identities=31% Similarity=0.593 Sum_probs=20.5
Q ss_pred eecCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEE
Q 046462 27 FFPGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLL 70 (210)
Q Consensus 27 ~~~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~ 70 (210)
.|.+++ |-|+|.+|..+.--.. +-+-+.+-..+.|++|++++
T Consensus 52 r~~~~gY~fi~d~~g~~l~hp~~--p~~~G~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 52 RYGGDGYFFIYDMDGVVLAHPSN--PELEGKNLSDLKDPNGKYLI 94 (95)
T ss_dssp -SBTTB--EEE-TTSBEEEESS---GGGTT-B-TT-B-TT--BHH
T ss_pred ccCCCCeEEEEeCCCeEEEcCCC--cccCCcccccCCCCCCCEEe
Confidence 344445 8889999987665332 22445666678899988764
No 28
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=37.76 E-value=68 Score=26.43 Aligned_cols=39 Identities=18% Similarity=0.420 Sum_probs=25.7
Q ss_pred ceeeeecCc-cCCcceEEEEEEeeeeecCCCEEEEcC-CCCEEEEEee
Q 046462 3 GIAIVDERF-CFEEETHLTVHKTSVFFPGDGFIVYDP-KGELILRFDS 48 (210)
Q Consensus 3 ~~~vV~~~~-~~~~~~~l~v~~k~~~~~~d~f~I~D~-~G~~vf~V~g 48 (210)
|++-|-..| |+++.-.|.|--. .|.|+|. .|.++|.+..
T Consensus 67 ~L~~IT~dyLCSp~aNvy~IdFt-------rFkIRDldsg~VLFEIaK 107 (240)
T KOG4037|consen 67 GLQRITGDYLCSPEANVYKIDFT-------RFKIRDLDSGTVLFEIAK 107 (240)
T ss_pred ccccccCCceeCcccceEEeeeE-------EEEEeeccCCcEEEEecC
Confidence 455555666 8877776655433 3788884 5888888765
No 29
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=36.50 E-value=49 Score=26.75 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=7.4
Q ss_pred CCCCeEEEEcCCCCe
Q 046462 54 QPKDELVLMEASGKC 68 (210)
Q Consensus 54 s~~~~~~l~D~~G~~ 68 (210)
+.++++.|.+.+|+.
T Consensus 110 ~~GD~I~v~~~~g~~ 124 (174)
T TIGR03784 110 RPGDVIRLQTPDGQW 124 (174)
T ss_pred CCCCEEEEEECCCeE
Confidence 344555555555543
No 30
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=36.41 E-value=1.7e+02 Score=24.59 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCCeEEEEEecCC---------CcccceEEEecCC-CC-------CCceEEEEEeecccCCceEEEEEeC
Q 046462 55 PKDELVLMEASGKCLLTLLRKKP---------SLHQRWEGYLGEK-ME-------DQEPIFSVCRSSIIGRSSVVAHVFG 117 (210)
Q Consensus 55 ~~~~~~l~D~~G~~L~~i~~k~~---------s~~~~~~v~~~~~-~~-------~~~~l~~ikk~~~~~~~~~~v~~~~ 117 (210)
....+.|.|..|+.-++|.+..- ++-+.|-.|-|.. ++ +.+..+--+|+-..- .++.+++..
T Consensus 84 ~~~~~~v~D~~gK~yL~v~r~G~~s~d~~~Ie~~ir~YVaFSG~NFPhilvPLMe~~~vMiNp~RPLViY-ESMs~~l~~ 162 (218)
T PF12119_consen 84 DDDEFDVCDEQGKEYLEVERSGEVSHDPALIESFIRSYVAFSGQNFPHILVPLMEEHQVMINPARPLVIY-ESMSFELDR 162 (218)
T ss_pred CCCeEEEEcCCCCEEEEEEEcCCcccCHHHHHHHHHHHhcccCCCCcHHhhhhHhhcCeeecCCCceEEe-EeeEEEecc
Confidence 35678888888888888877641 3445565555522 11 111111111111100 122232211
Q ss_pred -----C----CCceEEEEeeecC--ceEEEEeCCCCCceEEEEEeec
Q 046462 118 -----E----PSEEYRIEGSFSQ--RCCTIYNASSSKERVAKIKRKV 153 (210)
Q Consensus 118 -----~----~~~~~~v~G~~~~--~~~~I~~~~~~g~~VA~V~rk~ 153 (210)
. .+..++|+|.-.+ -+|.+..+ |++|++-.|+.
T Consensus 163 Ld~~~~~l~l~~~~l~v~GKRG~v~L~F~l~~~---g~~VG~G~K~l 206 (218)
T PF12119_consen 163 LDFTSPELELAGATLEVDGKRGDVTLNFELKEG---GEVVGTGSKRL 206 (218)
T ss_pred cCCCCCeeEeccceeEeecceeeEEEEEEEeEC---CEEEeeEEEEE
Confidence 0 4567888877554 47999999 99999999986
No 31
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=36.15 E-value=49 Score=28.30 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=25.0
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLL 70 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~ 70 (210)
.+++ |.|.+++|+..|+=+| . |++...-.|. ++|.+|+
T Consensus 81 ~G~GFF~V~~~~G~~~YTR~G--~-F~~d~~G~L~-~~G~~Vl 119 (252)
T PRK12641 81 KDNGWLTIKDTNGQEAYTKNG--H-LKINSKRKLT-VQNNEVI 119 (252)
T ss_pred cCCcEEEEEcCCCCeEEeeCC--C-eeECCCCCEE-eCCcEec
Confidence 3555 8888888988898888 3 3443333344 6677766
No 32
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=35.44 E-value=3.9e+02 Score=27.46 Aligned_cols=117 Identities=11% Similarity=0.131 Sum_probs=64.7
Q ss_pred CCCEEEEEeecCCCCCCCCeEEEEcCCC-CeEEE-EEecCCCcccceEEEecCCCCCCceEEEEEeecccCCceEEEEEe
Q 046462 39 KGELILRFDSYGPDSQPKDELVLMEASG-KCLLT-LLRKKPSLHQRWEGYLGEKMEDQEPIFSVCRSSIIGRSSVVAHVF 116 (210)
Q Consensus 39 ~G~~vf~V~g~~~~~s~~~~~~l~D~~G-~~L~~-i~~k~~s~~~~~~v~~~~~~~~~~~l~~ikk~~~~~~~~~~v~~~ 116 (210)
+++++|+.+-. .++.+.|.+| ++-.. ++.....++|.|. +++ ....+.+.-+.+.+.+. |++.
T Consensus 318 ~tkiAfv~~~~-------~~L~~~D~dG~n~~~ve~~~~~~i~sP~~S---PDG---~~vAY~ts~e~~~g~s~--vYv~ 382 (912)
T TIGR02171 318 KAKLAFRNDVT-------GNLAYIDYTKGASRAVEIEDTISVYHPDIS---PDG---KKVAFCTGIEGLPGKSS--VYVR 382 (912)
T ss_pred eeeEEEEEcCC-------CeEEEEecCCCCceEEEecCCCceecCcCC---CCC---CEEEEEEeecCCCCCce--EEEE
Confidence 46777777641 2899999998 55533 6776667788885 554 33444354334333332 3332
Q ss_pred ---CC-CC-ceEEEEeeecCceEEEEeCCCCCceEEEEEeeccCC-CceeeeceeEEEEEeCC
Q 046462 117 ---GE-PS-EEYRIEGSFSQRCCTIYNASSSKERVAKIKRKVDPL-NNVTLGKDVFLLCLEPG 173 (210)
Q Consensus 117 ---~~-~~-~~~~v~G~~~~~~~~I~~~~~~g~~VA~V~rk~~~~-~~~~~~~dtY~l~V~pg 173 (210)
.+ .+ -.+.|+.-..- ...|... ++++|.-|+-.-.+. ..-+...+||.|-.+.|
T Consensus 383 ~L~t~~~~~vkl~ve~aaip-rwrv~e~--gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~g 442 (912)
T TIGR02171 383 NLNASGSGLVKLPVENAAIP-RWRVLEN--GDTVIVYVSDASNNKDDATFAAYSTWQVPFANG 442 (912)
T ss_pred ehhccCCCceEeeccccccc-ceEecCC--CCeEEEEEcCCCCCcchhhhhhcceEEEEecCC
Confidence 11 11 24555533333 3344443 278888886554322 22355678888888754
No 33
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=35.09 E-value=64 Score=26.23 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.3
Q ss_pred CceEEEEeCCCCCceEEEEEeeccCCCceeeeceeEEEEEeCCC
Q 046462 131 QRCCTIYNASSSKERVAKIKRKVDPLNNVTLGKDVFLLCLEPGF 174 (210)
Q Consensus 131 ~~~~~I~~~~~~g~~VA~V~rk~~~~~~~~~~~dtY~l~V~pgv 174 (210)
.++|.|+++ |..|++|.--- -.+..+|.++|..|+
T Consensus 22 Arn~~ve~e---gveVgEiDIVA------ek~GerYavEVKAG~ 56 (209)
T COG4998 22 ARNMPVEDE---GVEVGEIDIVA------EKGGERYAVEVKAGM 56 (209)
T ss_pred eecceeecC---CeEEEEEEEEE------ecCCcEEEEEEeccc
Confidence 467899999 99999996642 346889999999884
No 34
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=35.00 E-value=47 Score=28.59 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=30.5
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLL 70 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~ 70 (210)
.+++ |.|.+++|...|+=.| . |.+...-.|.+++|.+|+
T Consensus 98 ~G~GFF~V~~~~G~~~yTR~G--~-F~~d~~G~Lvt~~G~~Vl 137 (262)
T PRK12692 98 NGRGYFQVTSPNGEIQYTRAG--S-FNKNAAGQLVTMEGYAVD 137 (262)
T ss_pred cCCceEEEECCCCCeEEEeCC--C-ceECCCCCEEcCCCCCcc
Confidence 4556 8888889988899888 4 566666678899998886
No 35
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=34.03 E-value=1.2e+02 Score=21.23 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=20.1
Q ss_pred EEEEcCCCC------EEEEEeecCCCCCCCCeEEEEcCCCCeEEEEE
Q 046462 33 FIVYDPKGE------LILRFDSYGPDSQPKDELVLMEASGKCLLTLL 73 (210)
Q Consensus 33 f~I~D~~G~------~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~i~ 73 (210)
.+|.|.+|+ +-|.+.|.+ .+.+...-...|.+|.-++.|+
T Consensus 24 v~v~D~~Gnpv~~~~V~f~~~~~~-~~~~~~~~~~Td~~G~a~~~l~ 69 (92)
T smart00634 24 ATVTDANGNPVAGQEVTFTTPSGG-ALTLSKGTATTDANGIATVTLT 69 (92)
T ss_pred EEEECCCCCCcCCCEEEEEECCCc-eeeccCCeeeeCCCCEEEEEEE
Confidence 456676665 445555522 1122223334566666666655
No 36
>PF06891 P2_Phage_GpR: P2 phage tail completion protein R (GpR); InterPro: IPR009678 This family consists of P2 phage tail completion protein R (GpR) and similar sequences from related phage. GpR is thought to be a tail completion protein which is essential for stable head joining []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=33.52 E-value=1e+02 Score=23.74 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=28.2
Q ss_pred eceeEEEEEe----CCCCHHHHHHHHHHHchhccCC----CCCCCCcCCCCC
Q 046462 162 GKDVFLLCLE----PGFDGAFAMGLVLILDQMYGDD----DDYIMPEVDPTP 205 (210)
Q Consensus 162 ~~dtY~l~V~----pgvD~ali~alvv~lD~i~~~~----~~~~~~~~~~~~ 205 (210)
+.-.|++.|. || |...+++.+++.=..++.+ .+...|.++...
T Consensus 49 ~~~~Y~~~i~i~df~~-~~d~l~~~v~~WL~~nqpdl~~~~~~~~~~f~~di 99 (135)
T PF06891_consen 49 AEYRYTAVISIEDFPG-DPDLLMAPVLAWLRENQPDLNPEKRLDGPTFDVDI 99 (135)
T ss_pred EEEEEEEEEEEEECCC-CHHHHHHHHHHHHHhcCcccCccccccCceEEEEe
Confidence 3455665554 78 9999999999987777777 334445444333
No 37
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=33.37 E-value=60 Score=24.40 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=10.8
Q ss_pred CCCCeEEEEcCCCCeEEEEEe
Q 046462 54 QPKDELVLMEASGKCLLTLLR 74 (210)
Q Consensus 54 s~~~~~~l~D~~G~~L~~i~~ 74 (210)
+.++++.+.+..+.--+++..
T Consensus 66 ~~Gd~v~v~~~~~~~~Y~V~~ 86 (126)
T cd06166 66 EKGDEIKVTTKNGTYKYKITS 86 (126)
T ss_pred CCCCEEEEEECCEEEEEEEEE
Confidence 445566666654444444433
No 38
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=33.14 E-value=41 Score=28.08 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=23.5
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLL 70 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~ 70 (210)
.+++ |.|.+++|+..|+=+| . |++...-.| +++|.+|+
T Consensus 83 ~G~GFF~V~~~~G~~~YTR~G--~-F~~d~~G~L-t~~G~~Vl 121 (209)
T PRK12643 83 QQDGYLAVQLPDGSEAYTRNG--N-IQISANGQM-TVQGYPLM 121 (209)
T ss_pred CCCcEEEEEcCCCCeEEeeCC--C-ceECCCCCC-cCCCcCcc
Confidence 3455 6777777777788777 3 344444445 66666665
No 39
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=32.82 E-value=53 Score=28.57 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=31.7
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLT 71 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~ 71 (210)
.+++ |.|..++|+.+|+=+| . |.....-.|...+|-||+-
T Consensus 98 ~g~gfF~I~~~dG~~~YTR~G--~-F~~d~~G~LVT~~G~~vl~ 138 (265)
T COG4786 98 TGDGFFQIQTPDGTIAYTRDG--S-FTVDEEGQLVTSNGYPVLD 138 (265)
T ss_pred cCCceEEEEcCCCCEEEeeCC--c-eeECCCCCEEeCCCCCccC
Confidence 3444 8998899999999999 4 5777777778888877775
No 40
>PF08909 DUF1854: Domain of unknown function (DUF1854); InterPro: IPR015005 These protein is functionally uncharacterised. It is found at the C terminus of a number of ATP transporter proteins suggesting it may be involved in ligand binding.
Probab=31.77 E-value=1.4e+02 Score=23.22 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=34.4
Q ss_pred ceEEEEEEeeeeecC-CCEEEEcCCCCEEEEEeecCCCCCC-CCeEEEEcCCCCe
Q 046462 16 ETHLTVHKTSVFFPG-DGFIVYDPKGELILRFDSYGPDSQP-KDELVLMEASGKC 68 (210)
Q Consensus 16 ~~~l~v~~k~~~~~~-d~f~I~D~~G~~vf~V~g~~~~~s~-~~~~~l~D~~G~~ 68 (210)
|.-..|..-+ .+.+ --|+|-...|..-|...|......+ ++.+.|.|.+|+.
T Consensus 59 P~I~rI~~Vs-~~~~p~~W~VeTdrG~t~f~l~g~edirrl~~~~llI~D~~G~~ 112 (133)
T PF08909_consen 59 PEILRIVSVS-SFGTPSTWDVETDRGPTRFVLKGEEDIRRLGGKRLLITDSHGNR 112 (133)
T ss_pred eEEEEEEEEe-cccCCcEEEEEecCCcEEEEEcCcccEEEecCCeEEEEeCCCCE
Confidence 4444555554 3333 3488888889999999985434333 3448888988864
No 41
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=31.70 E-value=58 Score=24.53 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=12.8
Q ss_pred CCCCCeEEEEcCCCCeEEEEEec
Q 046462 53 SQPKDELVLMEASGKCLLTLLRK 75 (210)
Q Consensus 53 ~s~~~~~~l~D~~G~~L~~i~~k 75 (210)
++.++++.+.+..+.-...+.++
T Consensus 62 l~~Gd~i~v~~~~~~~~Y~V~~~ 84 (127)
T cd05828 62 LEPGDIITLQTLGGTYTYRVTST 84 (127)
T ss_pred CCCCCEEEEEECCEEEEEEEeeE
Confidence 34566666666644444555444
No 42
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=31.19 E-value=37 Score=23.88 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=11.4
Q ss_pred CEEEEcCCCCEEEEEee
Q 046462 32 GFIVYDPKGELILRFDS 48 (210)
Q Consensus 32 ~f~I~D~~G~~vf~V~g 48 (210)
||.|+|.+|+.||+-..
T Consensus 27 D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp EEEEE-TT--EEEETTT
T ss_pred EEEEECCCCCEEEEecC
Confidence 68999999999998644
No 43
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=30.98 E-value=1.1e+02 Score=23.73 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=36.9
Q ss_pred EEEEcCCCCEEEEEeecC-----CCCCCCCeEEEEcCCCCeEEEEEecC-CCcccceEEEecC
Q 046462 33 FIVYDPKGELILRFDSYG-----PDSQPKDELVLMEASGKCLLTLLRKK-PSLHQRWEGYLGE 89 (210)
Q Consensus 33 f~I~D~~G~~vf~V~g~~-----~~~s~~~~~~l~D~~G~~L~~i~~k~-~s~~~~~~v~~~~ 89 (210)
+.|+|++|+.+-++.-.+ .++...-...|+|.+|+.|+.-|... ..+-..|.+-.+|
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG 63 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCS 63 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccC
Confidence 368999999999886521 11222335778999999888654432 3456788854433
No 44
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=30.50 E-value=65 Score=27.34 Aligned_cols=38 Identities=37% Similarity=0.601 Sum_probs=26.8
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLL 70 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~ 70 (210)
.+++ |.|.+++|. .|+=+| . |.+...-.|.+++|.+|+
T Consensus 84 ~G~GFF~V~~~~G~-~yTR~G--~-F~~d~~G~Lvt~~G~~vl 122 (238)
T PRK12690 84 EGEGFFMVETPQGE-RLTRAG--S-FTPNAEGELVDPDGNRLL 122 (238)
T ss_pred CCCcEEEEEcCCCC-EEeeCC--C-eEECCCCCEEcCCCCEeE
Confidence 4555 788888884 488777 3 455566667888888877
No 45
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=28.44 E-value=1.3e+02 Score=17.55 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=6.4
Q ss_pred EcCCCCEEEEEee
Q 046462 36 YDPKGELILRFDS 48 (210)
Q Consensus 36 ~D~~G~~vf~V~g 48 (210)
||+.|+++=.++.
T Consensus 1 YD~~G~l~~~~d~ 13 (38)
T PF05593_consen 1 YDANGRLTSVTDP 13 (38)
T ss_pred CCCCCCEEEEEcC
Confidence 3555555554443
No 46
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=26.40 E-value=1e+02 Score=20.70 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=17.9
Q ss_pred CCCCCeEEEEcCCCCeEEEEE
Q 046462 53 SQPKDELVLMEASGKCLLTLL 73 (210)
Q Consensus 53 ~s~~~~~~l~D~~G~~L~~i~ 73 (210)
..+..++.++|.+|+.|..++
T Consensus 42 ~~G~WrV~V~~~~G~~l~~~~ 62 (66)
T PF11141_consen 42 QPGDWRVEVVDEDGQVLGSLR 62 (66)
T ss_pred CCcCEEEEEEcCCCCEEEEEE
Confidence 457789999999999998775
No 47
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=26.09 E-value=1e+02 Score=25.96 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=26.6
Q ss_pred eecCCCEEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEEEEe
Q 046462 27 FFPGDGFIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLTLLR 74 (210)
Q Consensus 27 ~~~~d~f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~i~~ 74 (210)
...++.+.+.+ .+..-|+++= .--.-.-.+.|+|++|+.+-++.-
T Consensus 101 ~~~~~~~~~~~-~~~~~~~~~l--~~~a~~vti~I~D~~G~~Vrt~~l 145 (225)
T PRK06655 101 LVPGDTVLVGT-GGTTPFGVEL--PSAADNVTVTITDSAGQVVRTIDL 145 (225)
T ss_pred EEecceEEecC-CCceEEEEEc--CCCCcEEEEEEEcCCCCEEEEEec
Confidence 44555555433 3455666653 111234568899999999877754
No 48
>PF10984 DUF2794: Protein of unknown function (DUF2794); InterPro: IPR021252 This is a bacterial family of proteins with unknown function.
Probab=25.15 E-value=1.5e+02 Score=21.35 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=14.9
Q ss_pred EEEEc-CCCCEEEEEeecCCCCCCCCeEEEEcCCCC
Q 046462 33 FIVYD-PKGELILRFDSYGPDSQPKDELVLMEASGK 67 (210)
Q Consensus 33 f~I~D-~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~ 67 (210)
|.|+- ....++|+++-..++..-.....+.|..|+
T Consensus 38 Fsvfrr~~E~PlYrIeK~p~l~~~qg~y~v~~~~G~ 73 (85)
T PF10984_consen 38 FSVFRRAAERPLYRIEKRPKLARRQGAYAVIGEGGQ 73 (85)
T ss_pred EEEeeccCCCccEEEEeCccchhhCCceeeecCCCe
Confidence 44443 234555555553222223334444455553
No 49
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=25.08 E-value=88 Score=26.82 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=27.5
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLT 71 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~ 71 (210)
.+++ |.|.+++| ..|+=+| . |.+...-.|.+++|.+|+-
T Consensus 97 ~G~GfF~V~~~~g-~~YTR~G--~-F~~d~~G~Lvt~~G~~vlg 136 (263)
T PRK12636 97 SGDGFFRVGDGDN-TAYTRAG--N-FYLDNEGNIVNADGLYLLG 136 (263)
T ss_pred cCCcEEEEEeCCC-CEEEeCC--C-eEECCCCCEEcCCCCEeec
Confidence 3555 78877666 5688777 3 5666666688888888874
No 50
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=24.76 E-value=2.9e+02 Score=20.40 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=6.6
Q ss_pred eeecCccCCc
Q 046462 6 IVDERFCFEE 15 (210)
Q Consensus 6 vV~~~~~~~~ 15 (210)
+|+-..|.++
T Consensus 22 ~iDls~Ct~~ 31 (100)
T PF06903_consen 22 VIDLSQCTPE 31 (100)
T ss_pred EEEHHHCccC
Confidence 4566667776
No 51
>TIGR02527 dot_icm_IcmQ Dot/Icm secretion system protein IcmQ. Members of this protein family are the IcmQ component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation (PubMed:15661013).
Probab=23.83 E-value=40 Score=27.41 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=27.8
Q ss_pred EEEEeecCCCCCCCCeEEEEcCCCCeEEEEEecCCCc
Q 046462 43 ILRFDSYGPDSQPKDELVLMEASGKCLLTLLRKKPSL 79 (210)
Q Consensus 43 vf~V~g~~~~~s~~~~~~l~D~~G~~L~~i~~k~~s~ 79 (210)
+..|... ..++.+..+.-+|.-|+||++++.+-+.+
T Consensus 121 aiyI~q~-dIl~~~~dk~p~Dk~GkpLltLKdkai~L 156 (182)
T TIGR02527 121 AIAIDQS-DIIHLSADKAPKDKLGKLLLTLKDKAIKL 156 (182)
T ss_pred EEEEchH-hcccCCcccCcccccCCcccccchhhhch
Confidence 3344443 46788888999999999999999987654
No 52
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=23.71 E-value=1e+02 Score=26.38 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=26.1
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLT 71 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~ 71 (210)
.+++ |.|.+++|. .|+=+| . |.+...-.|.+++|.+|+-
T Consensus 90 ~G~GFF~V~~~~G~-~yTR~G--~-F~~d~~G~Lvt~~G~~vlg 129 (253)
T PRK12689 90 DGDAFLAVQTPQGE-RYTRDG--A-LEINAQGQLVTSDGYPVLG 129 (253)
T ss_pred CCCcEEEEEeCCCc-EEEeCC--c-eEECCCCCEEcCCCCEeec
Confidence 4555 777777774 477777 3 4555555678888888773
No 53
>PRK06803 flgE flagellar hook protein FlgE; Validated
Probab=23.41 E-value=1.8e+02 Score=26.80 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=27.7
Q ss_pred cCCC-EEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEE
Q 046462 29 PGDG-FIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLL 70 (210)
Q Consensus 29 ~~d~-f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~ 70 (210)
.+++ |.|.+++|+..|+=.| . |.+...-.|.+++|.+|.
T Consensus 78 ~G~GFF~v~~~~g~~~YTR~G--~-F~~d~~G~Lv~~~G~~vq 117 (402)
T PRK06803 78 SGGGFFVLKESDGDTAYTRAG--M-FRSDVDGYLTDPQGMKLQ 117 (402)
T ss_pred cCCcEEEEEcCCCCeeEEeCC--c-eeECCCCCEEcCCCCEeE
Confidence 4556 7888888888888888 3 455555567777776665
No 54
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=23.34 E-value=91 Score=26.33 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=12.5
Q ss_pred CeEEEEcCCCCeEEEEEe
Q 046462 57 DELVLMEASGKCLLTLLR 74 (210)
Q Consensus 57 ~~~~l~D~~G~~L~~i~~ 74 (210)
-.+.|+|++|+.+-++.-
T Consensus 126 v~v~I~D~~G~vV~t~~~ 143 (223)
T PRK12813 126 AELVVRDAAGAEVARETV 143 (223)
T ss_pred EEEEEEcCCCCEEEEEee
Confidence 367777888887766643
No 55
>PF09475 Dot_icm_IcmQ: Dot/Icm secretion system protein (dot_icm_IcmQ); InterPro: IPR013365 Proteins in this entry are the IcmQ component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation ().; PDB: 3FXE_A 3FXD_C.
Probab=22.60 E-value=29 Score=28.21 Aligned_cols=29 Identities=24% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCCCCeEEEEcCCCCeEEEEEecCCCc
Q 046462 51 PDSQPKDELVLMEASGKCLLTLLRKKPSL 79 (210)
Q Consensus 51 ~~~s~~~~~~l~D~~G~~L~~i~~k~~s~ 79 (210)
..++....+..+|.-|+||++++.+-+.+
T Consensus 128 dIl~~~~dk~~~Dk~GkpLltLkdrai~l 156 (179)
T PF09475_consen 128 DILSLSPDKIPTDKLGKPLLTLKDRAINL 156 (179)
T ss_dssp -----------------------------
T ss_pred hcccCCcccccccccCCcccccchhhcch
Confidence 45778888999999999999999987654
No 56
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=22.18 E-value=3.9e+02 Score=20.94 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=34.2
Q ss_pred CEEEEcCCCCEEEEEeecCC--CCCCCCeEE----EEcCC--CCeEEEEEecC-CCcccceEEEecCC
Q 046462 32 GFIVYDPKGELILRFDSYGP--DSQPKDELV----LMEAS--GKCLLTLLRKK-PSLHQRWEGYLGEK 90 (210)
Q Consensus 32 ~f~I~D~~G~~vf~V~g~~~--~~s~~~~~~----l~D~~--G~~L~~i~~k~-~s~~~~~~v~~~~~ 90 (210)
-|.|+|++|++++.+.-... ..-.++-+. +.|.+ |..+++-|... ..+-..|...-+|.
T Consensus 6 ~~~v~d~~~~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~ 73 (180)
T cd03676 6 LYAVYGPFGEPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGG 73 (180)
T ss_pred ceeeECCCCCEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccC
Confidence 48999999999988755211 112344444 33665 55555555443 23456786665543
No 57
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=21.90 E-value=84 Score=22.04 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=5.6
Q ss_pred EEEEcCCCCEEE
Q 046462 33 FIVYDPKGELIL 44 (210)
Q Consensus 33 f~I~D~~G~~vf 44 (210)
|..+|.+|+..|
T Consensus 71 FvLT~~dG~r~y 82 (89)
T smart00800 71 FVLTDIDGSRRY 82 (89)
T ss_pred EEEECCCCCEEE
Confidence 444555554433
No 58
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=21.67 E-value=2.2e+02 Score=22.94 Aligned_cols=41 Identities=12% Similarity=0.330 Sum_probs=28.7
Q ss_pred CEEEEc-CCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEEEEecC
Q 046462 32 GFIVYD-PKGELILRFDSYGPDSQPKDELVLMEASGKCLLTLLRKK 76 (210)
Q Consensus 32 ~f~I~D-~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~i~~k~ 76 (210)
.+-.+| ++|-+.+.-+|.- -.+.+.++|+.|+.+++|+.+.
T Consensus 69 a~C~fdvsegpvri~a~~nv----pyWSvsiyds~~nn~fS~ND~t 110 (182)
T COG5436 69 AFCRFDVSEGPVRIEAKGNV----PYWSVSIYDSNGNNFFSINDRT 110 (182)
T ss_pred heeEeeccCCcEEEEecCCC----ceEEEEEEcCCCCceEEecccc
Confidence 355566 5677766666632 3456888999999999988764
No 59
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=20.61 E-value=1e+02 Score=27.49 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=22.4
Q ss_pred eceeEEEEEeCCCCHHHHHHHH-HHHchhcc
Q 046462 162 GKDVFLLCLEPGFDGAFAMGLV-LILDQMYG 191 (210)
Q Consensus 162 ~~dtY~l~V~pgvD~ali~alv-v~lD~i~~ 191 (210)
..-.+.|.|.||.|.+|++|++ .++++...
T Consensus 156 ~~ad~~i~i~PGtD~al~~a~~~~ii~~~~~ 186 (432)
T PF00384_consen 156 AKADEWIPIRPGTDAALALAMAHVIIDEGLY 186 (432)
T ss_dssp GGTSEEEEE-TTTHHHHHHHHHHHHHHTTTS
T ss_pred hhccccccccccccHHhhcccccceeecccc
Confidence 3557779999999999999988 66655544
No 60
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=20.37 E-value=1.9e+02 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=11.9
Q ss_pred CEEEEEeecCCCCCCCCeEEEEcCCCCe
Q 046462 41 ELILRFDSYGPDSQPKDELVLMEASGKC 68 (210)
Q Consensus 41 ~~vf~V~g~~~~~s~~~~~~l~D~~G~~ 68 (210)
...|.-.| +.-...+.++|.|.+|..
T Consensus 82 ~~~f~~~G--~w~~~~~~i~L~~~~g~~ 107 (234)
T PRK10523 82 PSSFASYG--TWARTADKLVLTDSKGEK 107 (234)
T ss_pred CCceEeeE--EEEecCCEEEEecCCCCE
Confidence 34455545 322223455555555554
No 61
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=20.24 E-value=2.6e+02 Score=22.10 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=7.3
Q ss_pred EEEEcCCCCEEEEEee
Q 046462 33 FIVYDPKGELILRFDS 48 (210)
Q Consensus 33 f~I~D~~G~~vf~V~g 48 (210)
|.|+|.+|+.+-+|..
T Consensus 108 ~~V~d~~g~~lG~V~~ 123 (172)
T PRK00122 108 LEVVDEDGEELGKVTD 123 (172)
T ss_pred cEEEeCCCcEEEEEEE
Confidence 4444444444444444
No 62
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=20.01 E-value=2.7e+02 Score=21.94 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=9.5
Q ss_pred CEEEEcCCCCEEEEEee
Q 046462 32 GFIVYDPKGELILRFDS 48 (210)
Q Consensus 32 ~f~I~D~~G~~vf~V~g 48 (210)
+|.|.|++|+.+-+|..
T Consensus 87 G~~V~d~~g~~lG~V~~ 103 (161)
T PRK13828 87 GLAAVDTGGALLGRVKA 103 (161)
T ss_pred CCEEEeCCCCEEEEEEE
Confidence 45555555555555555
Done!