Query 046462
Match_columns 210
No_of_seqs 101 out of 466
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 21:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 9.2E-42 3.2E-46 284.2 20.2 189 3-195 24-216 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.0 4.1E-05 1.4E-09 62.7 9.9 97 14-115 60-161 (217)
3 2fim_A Tubby related protein 1 67.4 54 0.0018 27.4 12.2 103 65-174 36-162 (276)
4 3c5n_A Tubby-related protein 1 65.6 55 0.0019 26.8 12.2 102 68-174 15-138 (246)
5 4he6_A Peptidase family U32; u 53.6 23 0.00079 24.0 4.9 24 40-66 20-43 (89)
6 2v2f_A Penicillin binding prot 37.4 24 0.00081 18.2 2.2 15 58-72 6-20 (26)
7 1hzt_A Isopentenyl diphosphate 27.1 65 0.0022 24.2 4.1 52 32-85 5-64 (190)
8 3oe3_A Putative periplasmic pr 25.6 1.2E+02 0.0043 21.2 4.9 34 29-70 50-83 (98)
9 2dho_A Isopentenyl-diphosphate 25.1 1.3E+02 0.0045 23.8 5.8 58 30-87 26-93 (235)
10 2pny_A Isopentenyl-diphosphate 22.8 1.3E+02 0.0043 24.2 5.2 57 31-87 38-104 (246)
11 2ln7_A LPXTG-SITE transpeptida 22.1 15 0.00052 27.5 -0.5 19 30-48 79-97 (147)
12 1smp_I Erwinia chrysanthemi in 21.6 2.2E+02 0.0074 20.0 6.0 31 56-90 62-92 (101)
13 1b35_D CRPV, protein (cricket 21.4 30 0.001 21.4 0.8 15 1-15 28-42 (57)
14 1nrj_A Signal recognition part 21.2 78 0.0027 24.0 3.2 19 31-49 3-21 (158)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=9.2e-42 Score=284.17 Aligned_cols=189 Identities=28% Similarity=0.534 Sum_probs=145.8
Q ss_pred ceeeeecCccCCcceEEEEEEeeeeecCCCEEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEEEEEecCCCcccc
Q 046462 3 GIAIVDERFCFEEETHLTVHKTSVFFPGDGFIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLLTLLRKKPSLHQR 82 (210)
Q Consensus 3 ~~~vV~~~~~~~~~~~l~v~~k~~~~~~d~f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~~i~~k~~s~~~~ 82 (210)
.+|||+++||++++++|+|+||.+.+.+++|+|+|++|+++|+|+| +.++++.++.|+|++|++|++|++|.++++++
T Consensus 24 ~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~--~~~~~~~~~~l~D~~G~~l~~i~rk~~~~~~~ 101 (217)
T 1zxu_A 24 GGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKE--PVFGLHDKRVLLDGSGTPVVTLREKMVSMHDR 101 (217)
T ss_dssp CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEEC--SSTTCCSEEEEECTTSCEEEEEEC------CE
T ss_pred cEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEc--cccCCCCEEEEECCCCCEEEEEEccccccCcE
Confidence 5789999999999999999999988888899999999999999999 66899999999999999999999999999999
Q ss_pred eEEEecCCCCCCceEEEEEeeccc-CCceEEEEEeCC---CCceEEEEeeecCceEEEEeCCCCCceEEEEEeeccCCCc
Q 046462 83 WEGYLGEKMEDQEPIFSVCRSSII-GRSSVVAHVFGE---PSEEYRIEGSFSQRCCTIYNASSSKERVAKIKRKVDPLNN 158 (210)
Q Consensus 83 ~~v~~~~~~~~~~~l~~ikk~~~~-~~~~~~v~~~~~---~~~~~~v~G~~~~~~~~I~~~~~~g~~VA~V~rk~~~~~~ 158 (210)
|++|++++.++++++|+||+++.+ .+++++|+..++ +.+.|+|+|+|++++|+|++++ +|++||+|+|+|+ .++
T Consensus 102 ~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~-~~~~Va~I~kk~~-~~~ 179 (217)
T 1zxu_A 102 WQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGE-SDAIVAQMHRKHT-VQS 179 (217)
T ss_dssp EEEEETTCCCGGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETT-TCCEEEEEEEC------
T ss_pred EEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECC-CCEEEEEEEeeee-ccc
Confidence 999998764444689999988432 234678877643 2468999999999999999983 2689999999985 457
Q ss_pred eeeeceeEEEEEeCCCCHHHHHHHHHHHchhccCCCC
Q 046462 159 VTLGKDVFLLCLEPGFDGAFAMGLVLILDQMYGDDDD 195 (210)
Q Consensus 159 ~~~~~dtY~l~V~pgvD~ali~alvv~lD~i~~~~~~ 195 (210)
+++++|+|.|+|.||+|.+|+||+|++||+|+.++++
T Consensus 180 ~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~~ 216 (217)
T 1zxu_A 180 VFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDRA 216 (217)
T ss_dssp ---CBCSEEEEECTTSBHHHHHHHHHHHHHHHC----
T ss_pred cccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhccC
Confidence 7899999999999999999999999999999998764
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=97.97 E-value=4.1e-05 Score=62.73 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=64.3
Q ss_pred CcceEEEEEEeeeeecCCCEEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCC----eEEEEEecC-CCcccceEEEec
Q 046462 14 EEETHLTVHKTSVFFPGDGFIVYDPKGELILRFDSYGPDSQPKDELVLMEASGK----CLLTLLRKK-PSLHQRWEGYLG 88 (210)
Q Consensus 14 ~~~~~l~v~~k~~~~~~d~f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~----~L~~i~~k~-~s~~~~~~v~~~ 88 (210)
.....|+|..+. ...++.+.|+|.+|++++++.. +.+++..+..++++.+. +|++|+++. +++++.|+|+.+
T Consensus 60 ~G~~vf~V~~~~-~~~~~~~~l~D~~G~~l~~i~r--k~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~ 136 (217)
T 1zxu_A 60 NGNLLFKVKEPV-FGLHDKRVLLDGSGTPVVTLRE--KMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLG 136 (217)
T ss_dssp TSCEEEEEECSS-TTCCSEEEEECTTSCEEEEEEC--------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEET
T ss_pred CCCEEEEEEccc-cCCCCEEEEECCCCCEEEEEEc--cccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEEC
Confidence 467889998874 4456779999999999999999 77889999999998875 799999883 568899999988
Q ss_pred CCCCCCceEEEEEeecccCCceEEEEE
Q 046462 89 EKMEDQEPIFSVCRSSIIGRSSVVAHV 115 (210)
Q Consensus 89 ~~~~~~~~l~~ikk~~~~~~~~~~v~~ 115 (210)
+...++.+.++|+-. ++. ..+.|.-
T Consensus 137 ~~~~~~~~~~~I~G~-~~~-~~f~I~~ 161 (217)
T 1zxu_A 137 HNKDEKRCDFRVKGS-WLE-RSCVVYA 161 (217)
T ss_dssp TCCC-CCCSEEEESC-TTT-TCCEEEE
T ss_pred CCCCCCceEEEEEEe-EeC-CEEEEEE
Confidence 643333466777543 333 2456643
No 3
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=67.43 E-value=54 Score=27.38 Aligned_cols=103 Identities=11% Similarity=0.122 Sum_probs=55.8
Q ss_pred CCCeEEEEEecC--C--CcccceEEEecCCCCCCceEEEEEeecccCCceEEEEEeCC------CCceEEEEeeecCceE
Q 046462 65 SGKCLLTLLRKK--P--SLHQRWEGYLGEKMEDQEPIFSVCRSSIIGRSSVVAHVFGE------PSEEYRIEGSFSQRCC 134 (210)
Q Consensus 65 ~G~~L~~i~~k~--~--s~~~~~~v~~~~~~~~~~~l~~ikk~~~~~~~~~~v~~~~~------~~~~~~v~G~~~~~~~ 134 (210)
.|..-+.|++.. + .+.++|.+|..++ ..+.|...||+.--+.+.+-|++... +..-=.|+-||++..|
T Consensus 36 ~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~--~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtkF 113 (276)
T 2fim_A 36 GRTVRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRF 113 (276)
T ss_dssp TCCEEEEEEEEC-------CCEEEEEECSS--SCEEEEEEEECTTCSSCEEEEESCTTC------CEEEEEEECSSSSEE
T ss_pred CCeEEEEEEEeCCCCCCCCceEEEEEEeCC--CCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEEEEEccCCCEE
Confidence 345567775532 2 3568999998642 23455556654322333555655321 1122456789999999
Q ss_pred EEEeCC-C-----------CCceEEEEEeeccCCCcee--eeceeEEEEEeCCC
Q 046462 135 TIYNAS-S-----------SKERVAKIKRKVDPLNNVT--LGKDVFLLCLEPGF 174 (210)
Q Consensus 135 ~I~~~~-~-----------~g~~VA~V~rk~~~~~~~~--~~~dtY~l~V~pgv 174 (210)
+||+.. . ....+|.|.-+. +++ .|.-...+.+ |+.
T Consensus 114 ~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~----nvlg~~gPR~m~v~i-P~~ 162 (276)
T 2fim_A 114 TVFDNGQNPQRGYSTNVASLRQELAAVIYET----NVLGFRGPRRMTVII-PGM 162 (276)
T ss_dssp EEECSSBCGGGCTTSCGGGBCCEEEEEEEC-------------CCEEEEE-ECB
T ss_pred EEECCCCCcccccCcccccccEEEEEEEEEe----cccCCCCCeEEEEEe-cCc
Confidence 999872 0 016789998875 222 2445666666 443
No 4
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=65.57 E-value=55 Score=26.81 Aligned_cols=102 Identities=10% Similarity=0.102 Sum_probs=55.9
Q ss_pred eEEEEEecC--C--CcccceEEEecCCCCCCceEEEEEeecccCCceEEEEEeCC------CCceEEEEeeecCceEEEE
Q 046462 68 CLLTLLRKK--P--SLHQRWEGYLGEKMEDQEPIFSVCRSSIIGRSSVVAHVFGE------PSEEYRIEGSFSQRCCTIY 137 (210)
Q Consensus 68 ~L~~i~~k~--~--s~~~~~~v~~~~~~~~~~~l~~ikk~~~~~~~~~~v~~~~~------~~~~~~v~G~~~~~~~~I~ 137 (210)
.-+.|++.. + .+.++|.+|..++ ....|...||+.--+...+-|++... +..-=.|+-||++..|+||
T Consensus 15 ~qC~I~R~k~g~~~~~yp~y~l~~~~~--~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~iy 92 (246)
T 3c5n_A 15 VRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVF 92 (246)
T ss_dssp EEEEEEECC------CCCEEEEEESSS--SCCEEEEEEECTTCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEE
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEeCC--CcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEEEEEccCCCEEEEE
Confidence 345666533 2 3568999888642 12345555654322233555655322 1122456789999999999
Q ss_pred eCC-C-----------CCceEEEEEeeccCCCceeeeceeEEEEEeCCC
Q 046462 138 NAS-S-----------SKERVAKIKRKVDPLNNVTLGKDVFLLCLEPGF 174 (210)
Q Consensus 138 ~~~-~-----------~g~~VA~V~rk~~~~~~~~~~~dtY~l~V~pgv 174 (210)
+.. . ....+|.|.-+..-. ...|.-...+.+ |+.
T Consensus 93 D~g~~p~~~~s~~~~~~r~el~~v~Ye~n~l--~~~gPR~m~v~i-P~~ 138 (246)
T 3c5n_A 93 DNGQNPQRGYSTNVASLRQELAAVIYETNVL--GFRGPRRMTVII-PGM 138 (246)
T ss_dssp CSCBCGGGCTTSCGGGBCCEEEEEEECCCCC--C---CCCEEEEE-ECB
T ss_pred CCCCCcccccCcccccccEEEEEEEEEeccc--CCCCCeEEEEEe-cCc
Confidence 872 0 017789998885221 123455666666 443
No 5
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=53.64 E-value=23 Score=23.97 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=14.1
Q ss_pred CCEEEEEeecCCCCCCCCeEEEEcCCC
Q 046462 40 GELILRFDSYGPDSQPKDELVLMEASG 66 (210)
Q Consensus 40 G~~vf~V~g~~~~~s~~~~~~l~D~~G 66 (210)
|.....+.+ + |+.++.+.|+-+.|
T Consensus 20 g~~~ie~rN--~-f~~GD~iEi~~P~g 43 (89)
T 4he6_A 20 GIATVQQRN--H-FRPGDEVEFFGPEI 43 (89)
T ss_dssp TEEEEEESS--C-BCTTCEEEEESTTS
T ss_pred CEEEEEEcC--C-cCCCCEEEEEcCCC
Confidence 544555555 3 45666666666666
No 6
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=37.43 E-value=24 Score=18.20 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=10.6
Q ss_pred eEEEEcCCCCeEEEE
Q 046462 58 ELVLMEASGKCLLTL 72 (210)
Q Consensus 58 ~~~l~D~~G~~L~~i 72 (210)
.-.|+|.+|+.+.++
T Consensus 6 ss~IYD~~g~~i~~l 20 (26)
T 2v2f_A 6 SSKIYDNKNQLIADL 20 (26)
T ss_pred CCEEEeCCCCEeeec
Confidence 356777777777766
No 7
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=27.09 E-value=65 Score=24.15 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=18.7
Q ss_pred CEEEEcCCCCEEEEEeecCCCCC-------CCCeEEEEcCCCCeEEEEEecC-CCcccceEE
Q 046462 32 GFIVYDPKGELILRFDSYGPDSQ-------PKDELVLMEASGKCLLTLLRKK-PSLHQRWEG 85 (210)
Q Consensus 32 ~f~I~D~~G~~vf~V~g~~~~~s-------~~~~~~l~D~~G~~L~~i~~k~-~s~~~~~~v 85 (210)
-+.|+|.+|+++..+.-. ... ..-...+.+.+|+.|+.-|... -.+...|+.
T Consensus 5 ~~~v~d~~~~~~g~~~r~--~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~ 64 (190)
T 1hzt_A 5 HVILLNAQGVPTGTLEKY--AAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTN 64 (190)
T ss_dssp ----------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEE
T ss_pred EEEEECCCCCEeeeEEHh--hhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccC
Confidence 378999999988876552 111 1224567888898877554332 234578876
No 8
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=25.55 E-value=1.2e+02 Score=21.15 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=17.8
Q ss_pred cCCCEEEEcCCCCEEEEEeecCCCCCCCCeEEEEcCCCCeEE
Q 046462 29 PGDGFIVYDPKGELILRFDSYGPDSQPKDELVLMEASGKCLL 70 (210)
Q Consensus 29 ~~d~f~I~D~~G~~vf~V~g~~~~~s~~~~~~l~D~~G~~L~ 70 (210)
||-.|.--|.+|...++-+| ++-.|.|..|+|++
T Consensus 50 SGarY~~~~~~~~y~lwtKG--------~eA~L~~~~g~~i~ 83 (98)
T 3oe3_A 50 SGANYEAIDKNYTYKLYTKG--------KTAELVEGDDKPVL 83 (98)
T ss_dssp -CEEEEESSTTCCCEEEEET--------TEEEEEETTTEEEE
T ss_pred CcceEEccCCCCcEEEEEeC--------CcEEEEECCCCEEE
Confidence 33334443444444444444 44666777777665
No 9
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=25.06 E-value=1.3e+02 Score=23.84 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=35.6
Q ss_pred CCCEEEEcCCCCEEEEEeecC-CC------CCCCC--eEEEEcCCCCeEEEEEecC-CCcccceEEEe
Q 046462 30 GDGFIVYDPKGELILRFDSYG-PD------SQPKD--ELVLMEASGKCLLTLLRKK-PSLHQRWEGYL 87 (210)
Q Consensus 30 ~d~f~I~D~~G~~vf~V~g~~-~~------~s~~~--~~~l~D~~G~~L~~i~~k~-~s~~~~~~v~~ 87 (210)
..-+.|+|++|+++.++.-.. .+ ...+. ...+.|.+|+.|++-|... ..+...|..-.
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~ 93 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTC 93 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSE
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEecc
Confidence 345999999999999984421 00 01222 3357899999888654432 23455787443
No 10
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=22.83 E-value=1.3e+02 Score=24.22 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=34.9
Q ss_pred CCEEEEcCCCCEEEEEeecC-C------CCCCCC--eEEEEcCCCCeEEEEEecC-CCcccceEEEe
Q 046462 31 DGFIVYDPKGELILRFDSYG-P------DSQPKD--ELVLMEASGKCLLTLLRKK-PSLHQRWEGYL 87 (210)
Q Consensus 31 d~f~I~D~~G~~vf~V~g~~-~------~~s~~~--~~~l~D~~G~~L~~i~~k~-~s~~~~~~v~~ 87 (210)
+-+.|+|++|+++.++.-.. . ..-++. ...++|.+|+.|++-|... ..+...|..-.
T Consensus 38 E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~ 104 (246)
T 2pny_A 38 EMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSC 104 (246)
T ss_dssp CEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSE
T ss_pred ceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEecc
Confidence 45999999999999985421 0 001222 3357899998887654432 23455776433
No 11
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=22.10 E-value=15 Score=27.46 Aligned_cols=19 Identities=5% Similarity=0.083 Sum_probs=10.3
Q ss_pred CCCEEEEcCCCCEEEEEee
Q 046462 30 GDGFIVYDPKGELILRFDS 48 (210)
Q Consensus 30 ~d~f~I~D~~G~~vf~V~g 48 (210)
+|.+.|.+.++...|+|+.
T Consensus 79 GD~i~v~~~~~~~~Y~V~~ 97 (147)
T 2ln7_A 79 KDTLVLEYDNKTYTYEIQK 97 (147)
T ss_dssp TCEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEe
Confidence 3445555555555555555
No 12
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=21.60 E-value=2.2e+02 Score=20.03 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCeEEEEEecCCCcccceEEEecCC
Q 046462 56 KDELVLMEASGKCLLTLLRKKPSLHQRWEGYLGEK 90 (210)
Q Consensus 56 ~~~~~l~D~~G~~L~~i~~k~~s~~~~~~v~~~~~ 90 (210)
++-+.|+|++|+-|....+.. ..|+...+++
T Consensus 62 PDGi~L~~~dGs~l~ff~r~~----~~y~~~~~~G 92 (101)
T 1smp_I 62 PDGLTLTQADGSAVAFFSRNR----DRYEHKLVDG 92 (101)
T ss_dssp SSEEEEECTTSCEEEEEEEET----TEEEEECTTC
T ss_pred CCEEEEEcCCCCEEEEecccC----CcceeecCCC
Confidence 567999999999999877663 3777777664
No 13
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=21.40 E-value=30 Score=21.45 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=11.9
Q ss_pred CCceeeeecCccCCc
Q 046462 1 MSGIAIVDERFCFEE 15 (210)
Q Consensus 1 ~~~~~vV~~~~~~~~ 15 (210)
||||||++--|..+.
T Consensus 28 ~s~ipilgn~fs~pa 42 (57)
T 1b35_D 28 LSHIPVLGNIFSTPA 42 (57)
T ss_dssp TTCCCCSCCSSSSCT
T ss_pred hhccccccccccchH
Confidence 799999998886553
No 14
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=21.18 E-value=78 Score=24.04 Aligned_cols=19 Identities=21% Similarity=0.777 Sum_probs=13.8
Q ss_pred CCEEEEcCCCCEEEEEeec
Q 046462 31 DGFIVYDPKGELILRFDSY 49 (210)
Q Consensus 31 d~f~I~D~~G~~vf~V~g~ 49 (210)
|.|.|+.+.|+++|.-...
T Consensus 3 dQf~IFTp~GqVLy~yn~l 21 (158)
T 1nrj_A 3 DQLAVFTPQGQVLYQYNCL 21 (158)
T ss_dssp CEEEEECTTCBEEEEEETT
T ss_pred ceEEEeccCceEEEEeccc
Confidence 5577777778887777753
Done!