BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046463
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LE54|SP1L2_ARATH Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1
Length = 110
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 67/110 (60%), Gaps = 16/110 (14%)
Query: 1 MKRGESSGGGHSSLGYLFGSDQEPSQPPASPAAIKAPWDDDNTTKKPPNNSSPSEKL--- 57
M RG S+GGG SSLGYLFGS + P A K P + +++ PP ++ + +
Sbjct: 1 MGRGVSAGGGQSSLGYLFGSGEAPKLA----AVNKTPAETESSAHAPPTQAAAANAVDSI 56
Query: 58 ---------TVSNNYHRAQGQNSGNFITDRPTTRVQSAPGGDSSLGYLFG 98
+NNY RA+GQN+GNFITDRP+T+V SAPGG SSL YLFG
Sbjct: 57 KQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106
>sp|B3H4F1|SP1L1_ARATH Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1
Length = 113
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 67/113 (59%), Gaps = 20/113 (17%)
Query: 1 MKRGESSGGGHSSLGYLFGSDQEP----SQPPASPAAIKAPWDDD-----------NTTK 45
M RG S GGG SSLGYLFGS + P + PA P++ P D N TK
Sbjct: 1 MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPA-PSSETLPISADPSPKHVAAQTVNVTK 59
Query: 46 KPPNNSSPSEKLTVSNNYHRAQGQNSGNFITDRPTTRVQSAPGGDSSLGYLFG 98
+ P + S +NNY RA GQN+GNF+TDRP+T+V +APGG SSL YLFG
Sbjct: 60 QIPAGINKSS----TNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFG 108
>sp|Q8LGD1|SP1L5_ARATH Protein SPIRAL1-like 5 OS=Arabidopsis thaliana GN=SP1L5 PE=2 SV=1
Length = 99
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
Query: 16 YLFGSDQE--PSQPPASPAAIKAPWDDDNTTKKPPNNSSPSEKLTVSNNYHRAQGQNSGN 73
YLFGSD E + P P+ D+T + + P K++ +NNY R QGQNSGN
Sbjct: 16 YLFGSDNEIPKTPAPPVAPKPAPPYGVDSTEEDHEADQKP--KIS-NNNYQRVQGQNSGN 72
Query: 74 FITDRPTTRVQSAPGGDSSLGYLFGDK 100
F+TDRPTT+V+S PGG SSLGYLFGDK
Sbjct: 73 FVTDRPTTKVKSVPGGGSSLGYLFGDK 99
>sp|Q9SJW3|SPR1_ARATH Protein SPIRAL1 OS=Arabidopsis thaliana GN=SPR1 PE=2 SV=1
Length = 119
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 58/115 (50%), Gaps = 18/115 (15%)
Query: 1 MKRGESSGGGHSSLGYLFGSDQE------------------PSQPPASPAAIKAPWDDDN 42
M RG S GGG SSL YLFG D P+ P + A +
Sbjct: 1 MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60
Query: 43 TTKKPPNNSSPSEKLTVSNNYHRAQGQNSGNFITDRPTTRVQSAPGGDSSLGYLF 97
N P+ T NNY RA+GQN+GNF+TDRP+T+V +APGG SSL YLF
Sbjct: 61 VEPAELNKQIPAGIKTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLF 115
>sp|Q9LF22|SP1L4_ARATH Protein SPIRAL1-like 4 OS=Arabidopsis thaliana GN=SP1L4 PE=2 SV=1
Length = 127
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 64/115 (55%), Gaps = 19/115 (16%)
Query: 3 RGESSGGGHSSLGYLFGSDQ---EPSQPPASPA-------------AIKAPWDDDNTTKK 46
RG +SGGG SSLGYLFGS + +P++P A A P TT
Sbjct: 5 RGVNSGGGESSLGYLFGSGESVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTTT 64
Query: 47 PPNNSSPSEKLTVS---NNYHRAQGQNSGNFITDRPTTRVQSAPGGDSSLGYLFG 98
N + V NNY+R+ GQN GNF+T+RP+T+V +APGG SSLGYLFG
Sbjct: 65 GDKNKTEENSAGVRGSPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFG 119
>sp|Q2R0W8|SP1L2_ORYSJ Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica
GN=Os11g0629400 PE=2 SV=1
Length = 115
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 58 TVSNNYHRAQGQNSGNFITDRPTTRVQSAPGGDSSLGYLFGDK 100
T +NNY RAQGQN GNF+TDRP+T+V +APGG SSLGYLFG K
Sbjct: 73 TQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGGK 115
>sp|Q2QQ99|SP1L3_ORYSJ Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica
GN=Os12g0502000 PE=2 SV=1
Length = 101
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 7/88 (7%)
Query: 16 YLFGSDQEP--SQPPASPAAIKAPWDDDNTTKKPPNNSSPSEKLTVSNNYHRAQGQNSGN 73
YLFG + P ++ PA P AP K+ P S+ +NNY RA+GQN GN
Sbjct: 16 YLFGGGEAPKSAEKPA-PVQKPAPSSSAEKLKEIPAGIQSSK----ANNYMRAEGQNCGN 70
Query: 74 FITDRPTTRVQSAPGGDSSLGYLFGDKK 101
F+TDRP+T+VQ+APGG SSL YLF K
Sbjct: 71 FLTDRPSTKVQAAPGGGSSLDYLFSGNK 98
>sp|Q7Y1L9|SP1L1_ORYSJ Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica
GN=Os03g0417800 PE=2 SV=1
Length = 116
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 36/39 (92%)
Query: 60 SNNYHRAQGQNSGNFITDRPTTRVQSAPGGDSSLGYLFG 98
+NNYHRA GQN+GNF+TDRP+T+V +APGG SSLGYLFG
Sbjct: 76 NNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFG 114
>sp|Q9S7P8|SP1L3_ARATH Protein SPIRAL1-like 3 OS=Arabidopsis thaliana GN=SP1L3 PE=2 SV=1
Length = 122
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 56/115 (48%), Gaps = 26/115 (22%)
Query: 3 RGESSGGGHSSLGYLFGSDQEPSQPPAS-------------------PAAIKAPWDDDNT 43
RG ++G SSLGYLFGS Q S A+ P DN
Sbjct: 5 RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNK 64
Query: 44 TKKPPNNSSPSEKLTVSNNYHRAQGQNSGNFITDRPTTRVQSAPGGDSSLGYLFG 98
SP NNY R++GQN GNF+TDRP+T+V +APGG SSL YLFG
Sbjct: 65 KTSAGVRGSP-------NNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112
>sp|Q7XQ83|SP1L4_ORYSJ Protein SPIRAL1-like 4 OS=Oryza sativa subsp. japonica
GN=Os04g0578300 PE=3 SV=1
Length = 127
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 58 TVSNNYHRAQ-GQNSGNFITDRPTTRVQSAPGGDSSLGYLFGDK 100
+ SN YH Q G NSG ITDRP+TRV+ APGG SSLG+LFGD+
Sbjct: 82 SASNIYHTNQVGNNSGLLITDRPSTRVRCAPGGPSSLGFLFGDE 125
>sp|P40989|FKS2_YEAST 1,3-beta-glucan synthase component GSC2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GSC2 PE=1 SV=2
Length = 1895
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 15 GYLFGSDQEPSQPPASPAAIKAPWDDDNTT-KKPPNNSSPSEKLTVSNNYHRAQGQNSGN 73
G F Q+PSQ + P+++D + +PPN +PS + + + + G SG
Sbjct: 63 GTQFPQGQDPSQD-------QGPYNNDASYYNQPPNMMNPSSQDGENFSDFSSYGPPSGT 115
Query: 74 FITDRPTTRVQSAPGGDSSLG 94
+ D+ T S P D S G
Sbjct: 116 YPNDQYTPSQMSYPDQDGSSG 136
>sp|Q8N0U7|CA087_HUMAN Uncharacterized protein C1orf87 OS=Homo sapiens GN=C1orf87 PE=2
SV=1
Length = 546
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 40 DDNTTKKPPNNSSPSEKLTVSNNYHRAQGQNSGNF----ITDRPTTRVQSAPGGDSSLGY 95
DD KK P N+ SE NN G NS F I + S P GD SL Y
Sbjct: 81 DDVKEKKHPENNQKSE-----NNQKLLTGANSSRFLDGNIPSQANVHCSSVPTGDQSLSY 135
Query: 96 LFG 98
+ G
Sbjct: 136 VHG 138
>sp|Q1GCK1|ASSY_RUEST Argininosuccinate synthase OS=Ruegeria sp. (strain TM1040) GN=argG
PE=3 SV=1
Length = 407
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 16 YLFGSDQEPSQPPASPAAIKAPWDDDNTTKKPPNNSSPSEKLTVSNNYHRAQGQNSGNFI 75
Y++ P P P I+ ++ + SP+ LT N Y R G +F+
Sbjct: 206 YVYQRTVNPEDAPNEPEFIEITFEKGDAVAINGEAMSPATILTKLNEYGRKHGIGRLDFV 265
Query: 76 TDR----PTTRVQSAPGGD 90
+R + + APGGD
Sbjct: 266 ENRFVGMKSRGIYEAPGGD 284
>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nbr1 PE=1 SV=1
Length = 988
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 2 KRGESSGGGHSSLGYLFGSDQEPSQPPASPAAIKAPWDDDNTTKKPPN 49
+ G+ +SSL + GSD + ++ PA AP D D KPP+
Sbjct: 106 RTGKKPLAHYSSLVRVLGSDMKTTEEPAPEQCSSAPCDTDQPQDKPPD 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.126 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,860,335
Number of Sequences: 539616
Number of extensions: 1925047
Number of successful extensions: 4556
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 4480
Number of HSP's gapped (non-prelim): 87
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)