Query 046463
Match_columns 102
No_of_seqs 97 out of 99
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 21:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dxr_B Nesprin-1; beta-sandwic 18.2 38 0.0013 19.7 0.8 11 57-67 12-22 (35)
2 2gqb_A Conserved hypothetical 17.1 1.3E+02 0.0044 21.7 3.5 13 14-26 8-20 (130)
3 2wno_A Tumor necrosis factor-i 13.5 40 0.0014 22.5 0.0 14 66-79 133-146 (149)
4 2k0l_A Outer membrane protein 12.5 1.2E+02 0.0041 20.6 2.2 9 14-22 188-196 (216)
5 1wot_A Putative minimal nucleo 10.1 50 0.0017 20.6 -0.4 7 15-21 28-34 (98)
6 1no5_A Hypothetical protein HI 10.0 55 0.0019 20.9 -0.2 9 15-23 30-38 (114)
7 1smz_A Transportan in bicellar 9.1 64 0.0022 17.8 -0.1 8 13-20 6-13 (27)
8 1r5s_A GAP junction alpha-1 pr 9.1 3.6E+02 0.012 19.3 3.8 15 64-78 53-67 (132)
9 1ylq_A Putative nucleotidyltra 8.1 66 0.0023 20.0 -0.4 6 15-20 20-25 (96)
10 2k7m_A GAP junction alpha-5 pr 8.1 1.7E+02 0.0057 20.3 1.6 22 60-81 31-54 (109)
No 1
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=18.22 E-value=38 Score=19.69 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=8.8
Q ss_pred ccccccccccC
Q 046463 57 LTVSNNYHRAQ 67 (102)
Q Consensus 57 ~~~~Nny~r~~ 67 (102)
|..+|||+|+-
T Consensus 12 C~~aNNFARSF 22 (35)
T 4dxr_B 12 CALSNNFARSF 22 (35)
T ss_dssp CTTCCTGGGSS
T ss_pred hHhhhhHHHHh
Confidence 56799999974
No 2
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=17.11 E-value=1.3e+02 Score=21.71 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=9.2
Q ss_pred cccccCCCCCCCC
Q 046463 14 LGYLFGSDQEPSQ 26 (102)
Q Consensus 14 LGYLFGsge~~~~ 26 (102)
++=|||+.++.++
T Consensus 8 ~~kIfg~~~~aa~ 20 (130)
T 2gqb_A 8 MSAIFGDSAAASP 20 (130)
T ss_dssp HHHHTCCCSSCTT
T ss_pred HHHHhCCcccccC
Confidence 4568999887644
No 3
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=13.53 E-value=40 Score=22.50 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=0.0
Q ss_pred cCCCcccceeccCC
Q 046463 66 AQGQNSGNFITDRP 79 (102)
Q Consensus 66 ~~gqN~GNfiTdRp 79 (102)
.-.|||+|||+.|-
T Consensus 133 ~~~~~c~n~~~g~~ 146 (149)
T 2wno_A 133 TTSTGNKNFLAGRF 146 (149)
T ss_dssp --------------
T ss_pred ccccCCCceecccc
Confidence 44689999998763
No 4
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=12.53 E-value=1.2e+02 Score=20.56 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=6.6
Q ss_pred cccccCCCC
Q 046463 14 LGYLFGSDQ 22 (102)
Q Consensus 14 LGYLFGsge 22 (102)
|+|-||..+
T Consensus 188 l~Y~Fg~~~ 196 (216)
T 2k0l_A 188 VSYRFGQED 196 (216)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 788898653
No 5
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=10.08 E-value=50 Score=20.64 Aligned_cols=7 Identities=43% Similarity=0.458 Sum_probs=5.0
Q ss_pred ccccCCC
Q 046463 15 GYLFGSD 21 (102)
Q Consensus 15 GYLFGsg 21 (102)
=|||||-
T Consensus 28 v~LFGS~ 34 (98)
T 1wot_A 28 VRVFGSV 34 (98)
T ss_dssp CEECSHH
T ss_pred EEEEccc
Confidence 4888873
No 6
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=9.96 E-value=55 Score=20.89 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=6.5
Q ss_pred ccccCCCCC
Q 046463 15 GYLFGSDQE 23 (102)
Q Consensus 15 GYLFGsge~ 23 (102)
=|||||-..
T Consensus 30 v~LFGS~Ar 38 (114)
T 1no5_A 30 VWAFGSRVK 38 (114)
T ss_dssp EEEEGGGTT
T ss_pred EEEEeccCC
Confidence 489998544
No 7
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=9.10 E-value=64 Score=17.77 Aligned_cols=8 Identities=63% Similarity=1.169 Sum_probs=6.0
Q ss_pred ccccccCC
Q 046463 13 SLGYLFGS 20 (102)
Q Consensus 13 SLGYLFGs 20 (102)
|-|||.|.
T Consensus 6 SAGYLLGp 13 (27)
T 1smz_A 6 SAGYLLGK 13 (27)
T ss_dssp HHTTTTTT
T ss_pred ccceeecc
Confidence 56888875
No 8
>1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus norvegicus} SCOP: f.50.1.1
Probab=9.07 E-value=3.6e+02 Score=19.32 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=11.5
Q ss_pred cccCCCcccceeccC
Q 046463 64 HRAQGQNSGNFITDR 78 (102)
Q Consensus 64 ~r~~gqN~GNfiTdR 78 (102)
..+.-||..|+.|++
T Consensus 53 ~laSEQNWAN~atEq 67 (132)
T 1r5s_A 53 KQASEQNWANYSAEQ 67 (132)
T ss_dssp CCSCSCSSCCTTCCH
T ss_pred cchhhhhhhhhhhhh
Confidence 345579999999954
No 9
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=8.10 E-value=66 Score=20.00 Aligned_cols=6 Identities=67% Similarity=1.176 Sum_probs=3.9
Q ss_pred ccccCC
Q 046463 15 GYLFGS 20 (102)
Q Consensus 15 GYLFGs 20 (102)
=|||||
T Consensus 20 v~LFGS 25 (96)
T 1ylq_A 20 IYLYGS 25 (96)
T ss_dssp EEEESH
T ss_pred EEEEEE
Confidence 367776
No 10
>2k7m_A GAP junction alpha-5 protein; cell junction, cell membrane, membrane, transmembrane, membrane protein; NMR {Rattus norvegicus}
Probab=8.09 E-value=1.7e+02 Score=20.35 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=16.4
Q ss_pred cccccc--cCCCcccceeccCCcc
Q 046463 60 SNNYHR--AQGQNSGNFITDRPTT 81 (102)
Q Consensus 60 ~Nny~r--~~gqN~GNfiTdRpst 81 (102)
+|+|+. +.-||+.|+-|.|=..
T Consensus 31 ~~~~~~~laS~qN~an~~aEq~~~ 54 (109)
T 2k7m_A 31 FSDFSNNMGSRKNPDPLATEEVPN 54 (109)
T ss_dssp STTSCSTTSSCSCCCSSSSSCCSS
T ss_pred cccccccchhhhhhhhhhhhcccc
Confidence 667755 5569999999887554
Done!