Query 046463
Match_columns 102
No_of_seqs 97 out of 99
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 21:52:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046463.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046463hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1skza1 g.3.15.1 (A:7-58) Fact 43.7 3.4 0.00025 24.3 0.8 17 72-88 13-34 (52)
2 d2gqba1 a.282.1.1 (A:1-130) Hy 16.9 83 0.0061 21.0 4.2 13 14-26 8-20 (130)
3 d1wiga1 g.39.1.3 (A:1-32) Acti 15.4 22 0.0016 19.0 0.6 10 69-78 9-18 (32)
4 d1no5a_ d.218.1.5 (A:) Hypothe 12.9 18 0.0013 21.5 -0.2 9 15-23 25-33 (100)
5 d1wota_ d.218.1.5 (A:) Unnamed 9.7 25 0.0018 21.0 -0.4 7 15-21 28-34 (98)
6 d2h9fa1 d.21.1.4 (A:1-182) Hyp 8.6 29 0.0021 24.3 -0.5 10 67-76 100-109 (182)
7 d2dloa1 g.39.1.3 (A:8-42) Thyr 8.0 53 0.0038 17.6 0.6 10 69-78 12-21 (35)
8 d2j01p1 c.12.1.1 (P:5-150) Rib 7.8 74 0.0054 20.0 1.4 8 17-24 46-53 (146)
9 d2gycj1 c.12.1.1 (J:4-143) Rib 7.0 86 0.0063 19.4 1.4 23 2-24 17-53 (140)
10 d1jb0e_ b.34.4.2 (E:) Photosys 6.8 79 0.0058 19.1 1.1 16 49-64 46-61 (69)
No 1
>d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=43.67 E-value=3.4 Score=24.29 Aligned_cols=17 Identities=53% Similarity=0.644 Sum_probs=13.5
Q ss_pred cceeccCCc-----cceeeCCC
Q 046463 72 GNFITDRPT-----TRVQSAPG 88 (102)
Q Consensus 72 GNfiTdRps-----trv~a~PG 88 (102)
-|+||||-+ .|||+|-|
T Consensus 13 cniitdrctcsgvrcrvhcphg 34 (52)
T d1skza1 13 CNIITDRCTCSGVRCRVHCPHG 34 (52)
T ss_dssp CCTTTCSSCBCCCSSCCCCTTC
T ss_pred ceeeccceeeccceEEEECCCc
Confidence 489999976 48888765
No 2
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=16.94 E-value=83 Score=20.96 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=8.6
Q ss_pred cccccCCCCCCCC
Q 046463 14 LGYLFGSDQEPSQ 26 (102)
Q Consensus 14 LGYLFGsge~~~~ 26 (102)
++=+||..++.++
T Consensus 8 ~~kIFG~~~~~~~ 20 (130)
T d2gqba1 8 MSAIFGDSAAASP 20 (130)
T ss_dssp HHHHTCCCSSCTT
T ss_pred HHHHcCCccccCC
Confidence 3457998777554
No 3
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.43 E-value=22 Score=18.97 Aligned_cols=10 Identities=30% Similarity=0.611 Sum_probs=8.5
Q ss_pred CcccceeccC
Q 046463 69 QNSGNFITDR 78 (102)
Q Consensus 69 qN~GNfiTdR 78 (102)
..|.+|||.|
T Consensus 9 ~~C~~~ItGk 18 (32)
T d1wiga1 9 DSCEKYITGR 18 (32)
T ss_dssp SSSCCCCSSC
T ss_pred hhhhhhhhhh
Confidence 6899999986
No 4
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=12.92 E-value=18 Score=21.50 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=6.8
Q ss_pred ccccCCCCC
Q 046463 15 GYLFGSDQE 23 (102)
Q Consensus 15 GYLFGsge~ 23 (102)
=|||||-..
T Consensus 25 v~LFGS~ar 33 (100)
T d1no5a_ 25 VWAFGSRVK 33 (100)
T ss_dssp EEEEGGGTT
T ss_pred EEEECCCCC
Confidence 489999654
No 5
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=9.73 E-value=25 Score=20.98 Aligned_cols=7 Identities=43% Similarity=0.458 Sum_probs=5.3
Q ss_pred ccccCCC
Q 046463 15 GYLFGSD 21 (102)
Q Consensus 15 GYLFGsg 21 (102)
=|||||-
T Consensus 28 v~lFGS~ 34 (98)
T d1wota_ 28 VRVFGSV 34 (98)
T ss_dssp CEECSHH
T ss_pred EEEECCc
Confidence 4899983
No 6
>d2h9fa1 d.21.1.4 (A:1-182) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.59 E-value=29 Score=24.26 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=8.1
Q ss_pred CCCcccceec
Q 046463 67 QGQNSGNFIT 76 (102)
Q Consensus 67 ~gqN~GNfiT 76 (102)
..+||||++.
T Consensus 100 ~~~NCGNm~s 109 (182)
T d2h9fa1 100 WSGNCGNLST 109 (182)
T ss_dssp CSCCCHHHHH
T ss_pred ccccccchhh
Confidence 3699999875
No 7
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.02 E-value=53 Score=17.56 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=8.0
Q ss_pred CcccceeccC
Q 046463 69 QNSGNFITDR 78 (102)
Q Consensus 69 qN~GNfiTdR 78 (102)
--||.+||||
T Consensus 12 ~~C~~~I~dr 21 (35)
T d2dloa1 12 ATCSQPILDR 21 (35)
T ss_dssp TTTCCBCCSC
T ss_pred HHhchHHHHH
Confidence 3588999997
No 8
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}
Probab=7.82 E-value=74 Score=20.00 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=6.3
Q ss_pred ccCCCCCC
Q 046463 17 LFGSDQEP 24 (102)
Q Consensus 17 LFGsge~~ 24 (102)
.|..++.|
T Consensus 46 gFEGGQ~P 53 (146)
T d2j01p1 46 RFEGGRST 53 (146)
T ss_dssp SCCSSSCT
T ss_pred hhccCCCC
Confidence 58888876
No 9
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}
Probab=7.01 E-value=86 Score=19.41 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=13.9
Q ss_pred CCCccCCCCccc--------------cccccCCCCCC
Q 046463 2 KRGESSGGGHSS--------------LGYLFGSDQEP 24 (102)
Q Consensus 2 gRGvSsGGGQSS--------------LGYLFGsge~~ 24 (102)
|||..||-|.+| .---|+.++.|
T Consensus 17 gRG~gsg~Gkt~GrG~kGqk~R~g~~~r~gfEGGQ~P 53 (140)
T d2gycj1 17 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMP 53 (140)
T ss_dssp SSCCCSSSCCSSCSSCCCCSCCSSCSSSCSCCSSCSS
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccc
Confidence 677766654432 22358888876
No 10
>d1jb0e_ b.34.4.2 (E:) Photosystem I accessory protein E (PsaE) {Synechococcus elongatus [TaxId: 32046]}
Probab=6.76 E-value=79 Score=19.11 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCCCcccccccccc
Q 046463 49 NNSSPSEKLTVSNNYH 64 (102)
Q Consensus 49 aGi~~s~~~~~~Nny~ 64 (102)
.|++|+...+.+|||+
T Consensus 46 ~g~sg~~~GvnTNnfa 61 (69)
T d1jb0e_ 46 TGYSGSASGVNTNNFA 61 (69)
T ss_dssp CSSTTCCCCCCEEEEC
T ss_pred cccccccccccccccc
Done!