BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046467
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 121 LSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVL 164
+SGSIP E+ L + L+L+SN L G++P + +I L
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 110 LRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
LR K+ N +L G IP E+ + T+ TL L N+LTG++P
Sbjct: 441 LRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 121 LSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173
L G IP ++ L+ + ++L++NNL+G +P + F + + G+C Y
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGY 740
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 88 LWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG 147
L+ +N+ G++ +C L S + NYL SG+IPS + LS +R L+L N L G
Sbjct: 396 LYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 148 KLP 150
++P
Sbjct: 454 EIP 456
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 122 SGSIPSEITVLS-TIRTLELTSNNLTGK-LPNF 152
SG +P +T LS ++ TL+L+SNN +G LPN
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 120 LLSGSIPSEITVLSTIRTLELTSNNLTGKLPN 151
+LSG IP EI + + L L N+++G +P+
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 117 SNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
SN L+G IP I L + L+L++N+ +G +P
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 121 LSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVL 164
+SGSIP E+ L + L+L+SN L G++P + +I L
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 110 LRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
LR K+ N +L G IP E+ + T+ TL L N+LTG++P
Sbjct: 444 LRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 121 LSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173
L G IP ++ L+ + ++L++NNL+G +P + F + + G+C Y
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCGY 743
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 88 LWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG 147
L+ +N+ G++ +C L S + NYL SG+IPS + LS +R L+L N L G
Sbjct: 399 LYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 148 KLP 150
++P
Sbjct: 457 EIP 459
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 122 SGSIPSEITVLS-TIRTLELTSNNLTGK-LPNF 152
SG +P +T LS ++ TL+L+SNN +G LPN
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 120 LLSGSIPSEITVLSTIRTLELTSNNLTGKLPN 151
+LSG IP EI + + L L N+++G +P+
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 28.1 bits (61), Expect = 3.2, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 35 GLLSSPIQLEREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGS----VIGVSLLWY 90
GL S +Q + E + + G + HCK+ I C+ S +G ++
Sbjct: 187 GLFRSNLQTQEEE--DANYRLPEGKEAGEIETVHCKYV-IGCDGGHSWVRRTLGFEMIGE 243
Query: 91 ENDNIIGELGRFKFSCFPNLRS 112
+ D I G L S FP++RS
Sbjct: 244 QTDYIWGVLDAVPASNFPDIRS 265
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 121 LSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
+SG+IP ++ + T+ TL+ + N L+G LP
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 62 GNYTSDHCKWTGISCNSAGS----VIGVSLLWYENDNIIGELGRFKFSCFPNLRS 112
G + HCK+ I C+ S +G ++ + D I G L S FP++RS
Sbjct: 211 GEIETVHCKYV-IGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRS 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,550,612
Number of Sequences: 62578
Number of extensions: 172034
Number of successful extensions: 431
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 48
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)