Query 046467
Match_columns 183
No_of_seqs 186 out of 1865
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 12:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.7 2.2E-16 4.7E-21 143.3 9.1 128 35-176 371-509 (623)
2 PLN00113 leucine-rich repeat r 99.6 1.2E-15 2.5E-20 144.0 9.9 129 36-175 29-182 (968)
3 PLN00113 leucine-rich repeat r 99.0 2.7E-10 5.9E-15 107.8 5.8 72 104-176 519-590 (968)
4 PLN03150 hypothetical protein; 99.0 5E-10 1.1E-14 102.0 6.4 95 80-180 442-538 (623)
5 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.6E-14 69.8 3.8 61 108-169 1-61 (61)
6 KOG0472 Leucine-rich repeat pr 98.5 6.9E-08 1.5E-12 82.8 2.0 83 81-170 436-541 (565)
7 KOG0617 Ras suppressor protein 98.4 1.2E-08 2.6E-13 78.9 -2.8 83 80-170 33-115 (264)
8 PF13855 LRR_8: Leucine rich r 98.2 2.4E-06 5.2E-11 54.3 4.0 60 81-145 2-61 (61)
9 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.8E-11 52.4 2.3 36 109-146 2-37 (44)
10 PF12799 LRR_4: Leucine Rich r 98.1 2.1E-06 4.5E-11 51.5 2.9 39 133-172 1-39 (44)
11 KOG0472 Leucine-rich repeat pr 98.0 2E-06 4.2E-11 74.1 1.7 63 104-170 248-310 (565)
12 KOG0617 Ras suppressor protein 97.8 7.3E-07 1.6E-11 69.1 -3.7 64 104-169 98-162 (264)
13 PF14580 LRR_9: Leucine-rich r 97.8 2.3E-05 5.1E-10 60.7 4.6 65 104-170 60-126 (175)
14 PF08263 LRRNT_2: Leucine rich 97.8 6.6E-06 1.4E-10 48.9 0.6 37 37-77 4-43 (43)
15 KOG0444 Cytoskeletal regulator 97.8 4.6E-06 1E-10 75.5 -0.2 84 81-172 104-188 (1255)
16 PF14580 LRR_9: Leucine-rich r 97.8 2.7E-05 5.9E-10 60.3 4.0 65 104-172 37-103 (175)
17 KOG0444 Cytoskeletal regulator 97.8 9.4E-06 2E-10 73.6 1.2 65 104-170 74-139 (1255)
18 PRK15387 E3 ubiquitin-protein 97.7 3.5E-05 7.5E-10 72.0 4.2 61 108-174 402-462 (788)
19 PLN03210 Resistant to P. syrin 97.6 0.00022 4.9E-09 69.5 7.9 64 104-169 653-716 (1153)
20 PLN03210 Resistant to P. syrin 97.5 0.00029 6.2E-09 68.7 7.6 71 104-176 630-700 (1153)
21 KOG0618 Serine/threonine phosp 97.5 1.2E-05 2.5E-10 75.2 -2.0 63 104-170 403-465 (1081)
22 KOG4194 Membrane glycoprotein 97.5 2.2E-05 4.8E-10 70.5 -0.3 65 104-169 289-353 (873)
23 KOG4237 Extracellular matrix p 97.3 4.5E-05 9.8E-10 65.6 -0.0 68 104-172 270-361 (498)
24 KOG0618 Serine/threonine phosp 97.3 6.8E-05 1.5E-09 70.2 0.2 83 82-172 47-129 (1081)
25 KOG4237 Extracellular matrix p 97.3 5.5E-05 1.2E-09 65.1 -0.5 85 81-171 68-154 (498)
26 PRK15370 E3 ubiquitin-protein 97.2 0.00069 1.5E-08 63.3 6.5 35 134-171 263-297 (754)
27 KOG4658 Apoptotic ATPase [Sign 97.2 0.00015 3.2E-09 68.9 1.3 68 104-173 567-634 (889)
28 cd00116 LRR_RI Leucine-rich re 97.2 7.3E-05 1.6E-09 61.6 -0.6 89 80-171 81-179 (319)
29 KOG0532 Leucine-rich repeat (L 97.2 0.00012 2.7E-09 65.5 0.7 63 104-170 185-247 (722)
30 COG4886 Leucine-rich repeat (L 97.2 0.00027 5.8E-09 60.6 2.8 65 104-171 135-200 (394)
31 PRK15370 E3 ubiquitin-protein 97.1 0.0013 2.9E-08 61.5 7.0 60 108-175 220-279 (754)
32 PF00560 LRR_1: Leucine Rich R 97.0 0.00022 4.7E-09 36.2 0.4 20 135-155 2-21 (22)
33 KOG4194 Membrane glycoprotein 97.0 0.00038 8.3E-09 62.8 2.0 65 104-170 98-162 (873)
34 KOG4579 Leucine-rich repeat (L 96.9 9.1E-05 2E-09 55.5 -2.2 82 80-168 53-134 (177)
35 KOG4579 Leucine-rich repeat (L 96.9 0.00014 3E-09 54.5 -1.3 66 104-172 49-115 (177)
36 cd00116 LRR_RI Leucine-rich re 96.8 0.00042 9.1E-09 57.1 1.0 64 106-170 163-234 (319)
37 KOG4658 Apoptotic ATPase [Sign 96.8 0.00064 1.4E-08 64.6 2.1 63 104-168 591-653 (889)
38 COG4886 Leucine-rich repeat (L 96.5 0.00067 1.5E-08 58.1 0.3 62 104-168 159-220 (394)
39 PRK15387 E3 ubiquitin-protein 96.4 0.0073 1.6E-07 56.8 6.5 60 107-172 241-317 (788)
40 KOG1259 Nischarin, modulator o 96.4 0.001 2.2E-08 55.9 0.6 37 107-146 306-342 (490)
41 PF00560 LRR_1: Leucine Rich R 96.4 0.0013 2.8E-08 33.2 0.6 22 109-132 1-22 (22)
42 KOG1259 Nischarin, modulator o 96.3 0.0016 3.5E-08 54.7 1.1 63 104-170 280-342 (490)
43 KOG2739 Leucine-rich acidic nu 96.2 0.003 6.4E-08 51.6 2.2 64 104-170 61-129 (260)
44 KOG0532 Leucine-rich repeat (L 96.0 0.0013 2.8E-08 59.2 -0.9 59 110-171 145-203 (722)
45 KOG1644 U2-associated snRNP A' 95.8 0.016 3.4E-07 46.1 4.6 64 104-170 60-126 (233)
46 KOG0531 Protein phosphatase 1, 95.8 0.0062 1.3E-07 52.9 2.5 73 104-181 114-188 (414)
47 KOG0531 Protein phosphatase 1, 95.5 0.0045 9.8E-08 53.8 0.5 69 104-176 91-159 (414)
48 KOG1859 Leucine-rich repeat pr 95.1 0.003 6.6E-08 58.5 -1.8 68 104-176 183-251 (1096)
49 KOG1859 Leucine-rich repeat pr 94.7 0.0023 4.9E-08 59.3 -3.8 66 104-171 205-293 (1096)
50 KOG3207 Beta-tubulin folding c 94.3 0.012 2.7E-07 51.4 0.1 47 132-179 245-295 (505)
51 PF13504 LRR_7: Leucine rich r 94.3 0.026 5.6E-07 26.6 1.2 13 134-146 2-14 (17)
52 KOG2739 Leucine-rich acidic nu 93.3 0.066 1.4E-06 43.8 2.5 62 106-170 41-104 (260)
53 KOG1644 U2-associated snRNP A' 93.2 0.11 2.4E-06 41.4 3.7 60 107-170 41-101 (233)
54 smart00369 LRR_TYP Leucine-ric 93.0 0.083 1.8E-06 27.3 1.9 19 133-152 2-20 (26)
55 smart00370 LRR Leucine-rich re 93.0 0.083 1.8E-06 27.3 1.9 19 133-152 2-20 (26)
56 KOG2982 Uncharacterized conser 92.0 0.1 2.3E-06 44.0 2.1 67 104-171 93-160 (418)
57 KOG3665 ZYG-1-like serine/thre 91.5 0.061 1.3E-06 50.2 0.3 62 104-168 169-231 (699)
58 KOG3207 Beta-tubulin folding c 90.5 0.15 3.2E-06 44.9 1.7 64 105-170 243-314 (505)
59 PF13516 LRR_6: Leucine Rich r 88.6 0.038 8.2E-07 28.1 -2.1 15 133-147 2-16 (24)
60 KOG3665 ZYG-1-like serine/thre 87.8 0.2 4.4E-06 46.7 0.7 90 74-170 167-263 (699)
61 KOG0473 Leucine-rich repeat pr 87.5 0.012 2.6E-07 47.9 -6.5 83 80-170 42-124 (326)
62 KOG2982 Uncharacterized conser 85.1 0.4 8.7E-06 40.6 1.0 64 106-170 69-134 (418)
63 KOG2123 Uncharacterized conser 84.9 0.052 1.1E-06 45.4 -4.2 58 104-163 59-123 (388)
64 smart00365 LRR_SD22 Leucine-ri 84.6 0.87 1.9E-05 23.9 1.8 15 132-146 1-15 (26)
65 smart00364 LRR_BAC Leucine-ric 83.5 0.82 1.8E-05 24.1 1.4 17 134-151 3-19 (26)
66 smart00368 LRR_RI Leucine rich 80.2 1.5 3.2E-05 23.2 1.7 14 133-146 2-15 (28)
67 KOG2120 SCF ubiquitin ligase, 79.3 0.84 1.8E-05 38.7 0.8 61 104-166 309-372 (419)
68 PRK15386 type III secretion pr 77.6 4.5 9.8E-05 35.7 4.9 51 108-167 72-122 (426)
69 COG5238 RNA1 Ran GTPase-activa 77.5 3.1 6.6E-05 35.0 3.6 65 104-170 88-170 (388)
70 PRK15386 type III secretion pr 76.7 4.7 0.0001 35.6 4.7 31 134-167 157-187 (426)
71 KOG1909 Ran GTPase-activating 72.8 1.2 2.5E-05 38.3 0.0 64 105-170 89-170 (382)
72 KOG1909 Ran GTPase-activating 72.4 1.2 2.7E-05 38.1 0.1 42 104-146 209-254 (382)
73 COG5238 RNA1 Ran GTPase-activa 71.8 2.8 6.2E-05 35.2 2.1 63 104-168 54-131 (388)
74 KOG2120 SCF ubiquitin ligase, 69.5 0.3 6.4E-06 41.4 -4.1 61 109-170 186-247 (419)
75 PF13306 LRR_5: Leucine rich r 59.5 21 0.00045 24.8 4.4 57 104-165 54-111 (129)
76 KOG0473 Leucine-rich repeat pr 59.3 0.22 4.8E-06 40.7 -6.5 64 104-170 38-101 (326)
77 PF13306 LRR_5: Leucine rich r 58.8 28 0.0006 24.1 5.0 78 81-167 13-91 (129)
78 KOG2123 Uncharacterized conser 44.9 3.6 7.8E-05 34.7 -1.7 67 104-174 37-105 (388)
79 KOG3763 mRNA export factor TAP 40.0 14 0.00031 33.6 1.1 62 106-170 216-283 (585)
80 TIGR00864 PCC polycystin catio 29.9 33 0.00071 37.2 1.9 16 104-119 15-30 (2740)
81 smart00367 LRR_CC Leucine-rich 29.9 39 0.00084 17.0 1.4 11 133-143 2-12 (26)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.66 E-value=2.2e-16 Score=143.33 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=102.7
Q ss_pred CCCCchhHHHHHHHHcCCCCCCCCCCCCCCCCCCC-----ccccceeCC---C--CCEEEEEeCccC-CCcccCCcCCcc
Q 046467 35 GLLSSPIQLEREALLATGWWVNNWATTGNYTSDHC-----KWTGISCNS---A--GSVIGVSLLWYE-NDNIIGELGRFK 103 (183)
Q Consensus 35 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~W~~~~~C-----~w~gv~C~~---~--~~v~~L~l~~l~-~g~l~~~~g~l~ 103 (183)
..+..+++.+|..+.... ..+|++ ++| .|.|+.|.. . ..++.|+|.+.+ .|.+|..
T Consensus 371 ~~~~~aL~~~k~~~~~~~-------~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~----- 437 (623)
T PLN03150 371 LEEVSALQTLKSSLGLPL-------RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND----- 437 (623)
T ss_pred chHHHHHHHHHHhcCCcc-------cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHH-----
Confidence 344556666666552211 236865 455 699999953 1 248888888543 5666655
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e 176 (183)
++++++|+.|+|++|+ ++|.+|+.++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|.+
T Consensus 438 i~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 438 ISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred HhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 7788999999999999 99999999999999999999999999999999999999999999999999998864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.62 E-value=1.2e-15 Score=143.95 Aligned_cols=129 Identities=22% Similarity=0.319 Sum_probs=82.0
Q ss_pred CCCchhHHHHHHHHcCCCCCCCCCCCCCC-CCCCCccccceeCCCCCEEEEEeCccC-CCcccCCcCCccCCCCCCCcEE
Q 046467 36 LLSSPIQLEREALLATGWWVNNWATTGNY-TSDHCKWTGISCNSAGSVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSF 113 (183)
Q Consensus 36 ~~~~~l~~~~~~l~~~~~~~~~~~~~~W~-~~~~C~w~gv~C~~~~~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L 113 (183)
.|..++.++++++.+.. ..+.+|+ ..++|.|.|+.|+..++|+.|++.+.. .|.++.. +..+++|++|
T Consensus 29 ~~~~~l~~~~~~~~~~~-----~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~-----~~~l~~L~~L 98 (968)
T PLN00113 29 EELELLLSFKSSINDPL-----KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSA-----IFRLPYIQTI 98 (968)
T ss_pred HHHHHHHHHHHhCCCCc-----ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChH-----HhCCCCCCEE
Confidence 56678888888874322 2267784 678999999999987899999998542 4444433 4455555555
Q ss_pred eccCCCCccccCCcccc-CCCC----------------------CCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 114 KIRSNYLLSGSIPSEIT-VLST----------------------IRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 114 ~ls~N~~l~G~iP~~~~-~l~~----------------------L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
++++|+ ++|.+|..+. .+++ |++|++++|.++|.+|..++++++|++|+|++|++.
T Consensus 99 ~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 99 NLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred ECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 555555 5555555433 4444 555555555555555656666666666666666666
Q ss_pred cccCC
Q 046467 171 CFYNA 175 (183)
Q Consensus 171 ~~~~~ 175 (183)
+.+|.
T Consensus 178 ~~~p~ 182 (968)
T PLN00113 178 GKIPN 182 (968)
T ss_pred ccCCh
Confidence 55553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.03 E-value=2.7e-10 Score=107.76 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=63.0
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e 176 (183)
+.++++|++|++++|. ++|.+|..+..+++|++|||++|+++|.+|..+.++++|+.|++++|++.|.+|.+
T Consensus 519 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQ-LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred HcCccCCCEEECCCCc-ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 6678888888998888 88888888888889999999999999999988888889999999999988888765
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.01 E-value=5e-10 Score=101.97 Aligned_cols=95 Identities=22% Similarity=0.348 Sum_probs=80.4
Q ss_pred CCEEEEEeCccC-CCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcccc-c
Q 046467 80 GSVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTY-Y 157 (183)
Q Consensus 80 ~~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l-~ 157 (183)
.+++.|++.+.. .|.+|.. ++.+++|+.|++++|+ ++|.+|+.++++++|++|+|++|+|+|.+|..++.. .
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~-----~~~l~~L~~LdLs~N~-lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~ 515 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPS-----LGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515 (623)
T ss_pred CCCCEEECCCCcccCcCChH-----HhCCCCCCEEECCCCC-CCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccc
Confidence 356677776432 4566655 7889999999999999 999999999999999999999999999999998864 5
Q ss_pred cccEEEcccCCcccccCCccccc
Q 046467 158 IFYKIVLMLSAGVCFYNAEEVCA 180 (183)
Q Consensus 158 ~L~~L~L~~n~~~~~~~~e~~~~ 180 (183)
++..+++..|+..|-.|....|.
T Consensus 516 ~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 516 HRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred cCceEEecCCccccCCCCCCCCc
Confidence 77899999999999888766673
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1.2e-09 Score=69.81 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=54.1
Q ss_pred CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCc
Q 046467 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAG 169 (183)
Q Consensus 108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~ 169 (183)
++|++|++++|+ ++..-+..+..+++|++|++++|+++.--|..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999999 9965456789999999999999999976677899999999999999974
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.46 E-value=6.9e-08 Score=82.84 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=66.3
Q ss_pred CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCcc----------------------ccCCcc-ccCCCCCCE
Q 046467 81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLS----------------------GSIPSE-ITVLSTIRT 137 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~----------------------G~iP~~-~~~l~~L~~ 137 (183)
+++-|++++.--+.+|.+ ++.+..||.||++.|+ |. |.+|+. +.++.+|.+
T Consensus 436 kLt~L~L~NN~Ln~LP~e-----~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 436 KLTFLDLSNNLLNDLPEE-----MGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred cceeeecccchhhhcchh-----hhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 455566664324566666 6677789999999887 54 334444 788999999
Q ss_pred EEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 138 LELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 138 L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
||+.+|.+. .||+.++++++|++|.|++|+|+
T Consensus 510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999998 89999999999999999999998
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.43 E-value=1.2e-08 Score=78.88 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=62.1
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
..++.|.+++..--.+|+. +..+.+|+.|++++|+ +. .+|..+..+++|+.|+++-|++. .+|..+|++|.|
T Consensus 33 s~ITrLtLSHNKl~~vppn-----ia~l~nlevln~~nnq-ie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPN-----IAELKNLEVLNLSNNQ-IE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhcccCceeecCCc-----HHHhhhhhhhhcccch-hh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3567777765433445555 6677788888888888 77 67888888888888888888887 678888888888
Q ss_pred cEEEcccCCcc
Q 046467 160 YKIVLMLSAGV 170 (183)
Q Consensus 160 ~~L~L~~n~~~ 170 (183)
+.|+|.-||++
T Consensus 105 evldltynnl~ 115 (264)
T KOG0617|consen 105 EVLDLTYNNLN 115 (264)
T ss_pred hhhhccccccc
Confidence 88888777776
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=2.4e-06 Score=54.34 Aligned_cols=60 Identities=28% Similarity=0.442 Sum_probs=46.3
Q ss_pred CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcc
Q 046467 81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNL 145 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l 145 (183)
+++.|++.+.+-..+|... |..+++|++|++++|. ++..-|..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~----f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDS----FSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTT----TTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHH----HcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3556666643223343221 7889999999999999 9977777899999999999999975
No 9
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=1.3e-06 Score=52.41 Aligned_cols=36 Identities=28% Similarity=0.620 Sum_probs=21.3
Q ss_pred CCcEEeccCCCCccccCCccccCCCCCCEEEccCCccc
Q 046467 109 NLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLT 146 (183)
Q Consensus 109 ~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~ 146 (183)
+|++|++++|+ ++ .+|+.+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~-i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQ-IT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS--S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCC-Cc-ccCchHhCCCCCCEEEecCCCCC
Confidence 56666666666 66 45555666666666666666655
No 10
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=2.1e-06 Score=51.49 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 133 STIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 133 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
++|++|++++|+++ .+|++++++++|+.|++++|+++-.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 47999999999999 7998899999999999999998854
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.03 E-value=2e-06 Score=74.10 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=57.4
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
..+++++..||+.+|+ ++ ..|+++..+++|+.||+|+|.++ .+|.++|++ .|+.|.+.+|++.
T Consensus 248 ~~~L~~l~vLDLRdNk-lk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNK-LK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccccceeeeccccc-cc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 4588999999999999 98 79999999999999999999999 489999999 8999999999875
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.84 E-value=7.3e-07 Score=69.11 Aligned_cols=64 Identities=25% Similarity=0.338 Sum_probs=31.0
Q ss_pred CCCCCCCcEEeccCCCCccc-cCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSG-SIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAG 169 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G-~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~ 169 (183)
|+.++.|+.||++.|+ ++- .+|..|..++.|+.|+|++|.|. -+|+.++++++|+.|.+..|.+
T Consensus 98 fgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred cCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 4555555555555555 432 23444444444444455555444 3444455555555554444443
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.84 E-value=2.3e-05 Score=60.66 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=27.9
Q ss_pred CCCCCCCcEEeccCCCCccccCCccc-cCCCCCCEEEccCCccccCCC-CCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEI-TVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~-~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n~~~ 170 (183)
+..+++|+.|++++|+ ++ .+++.+ ..+++|++|++++|++..--- ..+..+++|+.|+|.+|+..
T Consensus 60 l~~L~~L~~L~L~~N~-I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNR-IS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccChhhhhhcccCCCC-CC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5667888888888888 77 355444 357888888888888864211 34667888888888888775
No 14
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.79 E-value=6.6e-06 Score=48.90 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=23.4
Q ss_pred CCchhHHHHHHHHcCCCCCCCCCCCCCCC---CCCCccccceeC
Q 046467 37 LSSPIQLEREALLATGWWVNNWATTGNYT---SDHCKWTGISCN 77 (183)
Q Consensus 37 ~~~~l~~~~~~l~~~~~~~~~~~~~~W~~---~~~C~w~gv~C~ 77 (183)
|..+|+++|+++...+. ..+.+|+. .++|.|.||.|+
T Consensus 4 d~~aLl~~k~~l~~~~~----~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 4 DRQALLAFKKSLNNDPS----GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHCTT-SC-----CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHHHHHHHHhcccccC----cccccCCCcCCCCCeeeccEEeC
Confidence 45678888888765332 23788953 699999999995
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.79 E-value=4.6e-06 Score=75.51 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=65.0
Q ss_pred CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCcc-ccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSE-ITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~-~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
.++-|++++.+-..+|.. +-.-+++.+|+||+|+ +. +||.. +.+++.|-+||||+|++. .+|+++.++..|
T Consensus 104 dLt~lDLShNqL~EvP~~-----LE~AKn~iVLNLS~N~-Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTN-----LEYAKNSIVLNLSYNN-IE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML 175 (1255)
T ss_pred cceeeecchhhhhhcchh-----hhhhcCcEEEEcccCc-cc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence 455566654333344433 5566778899999999 87 68865 578999999999999997 799999999999
Q ss_pred cEEEcccCCcccc
Q 046467 160 YKIVLMLSAGVCF 172 (183)
Q Consensus 160 ~~L~L~~n~~~~~ 172 (183)
++|.|++|++--|
T Consensus 176 qtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHF 188 (1255)
T ss_pred hhhhcCCChhhHH
Confidence 9999999987644
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.77 E-value=2.7e-05 Score=60.30 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=29.6
Q ss_pred CC-CCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCc-cccccccEEEcccCCcccc
Q 046467 104 FS-CFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFT-VTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 104 ~~-~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~L~~n~~~~~ 172 (183)
++ .+.+|+.|++++|. ++. ++ .+..++.|++|++++|+++ .++..+ ..+++|+.|+|++|++...
T Consensus 37 L~~~l~~L~~L~Ls~N~-I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 37 LGATLDKLEVLDLSNNQ-ITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp --TT-TT--EEE-TTS---S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred hhhhhcCCCEEECCCCC-Ccc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCCh
Confidence 44 57899999999999 884 44 5778999999999999999 566555 3689999999999999754
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.75 E-value=9.4e-06 Score=73.56 Aligned_cols=65 Identities=28% Similarity=0.341 Sum_probs=48.2
Q ss_pred CCCCCCCcEEeccCCCCc-cccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLL-SGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l-~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
+..+++|+.+.+..|+ + +..||+.+..+..|..||||+|++. .+|..+-.-+++-.|+|++|++-
T Consensus 74 Ls~Lp~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hccchhhHHHhhhccc-cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc
Confidence 5567777777777776 5 3347777778888888888888887 67777777777777777777764
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.70 E-value=3.5e-05 Score=71.97 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=45.7
Q ss_pred CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
++|+.|++++|. +++ +|.. ..+|+.|++++|+++ .||..+.++++|+.|+|++|++++..+
T Consensus 402 s~L~~LdLS~N~-Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 402 SELKELMVSGNR-LTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred cCCCEEEccCCc-CCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 355666666666 663 5543 245677888888887 789899999999999999999997744
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.57 E-value=0.00022 Score=69.47 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=38.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAG 169 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~ 169 (183)
+..+++|+.|++++|. .-..+|..++++++|+.|++++|+.-+.+|..+ ++++|+.|+|+++..
T Consensus 653 ls~l~~Le~L~L~~c~-~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 653 LSMATNLETLKLSDCS-SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred cccCCcccEEEecCCC-CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 4455666666666665 445666666666666666666655555666544 555666666555443
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.50 E-value=0.00029 Score=68.73 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=58.5
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e 176 (183)
+..+++|+.|++++++ ..+.+|. +..+++|++|+|++|.....+|.+++++++|+.|+++.++....+|..
T Consensus 630 ~~~l~~Lk~L~Ls~~~-~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccCCCCCEEECCCCC-CcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 5578889999998876 5567774 788899999999998877889999999999999999887766666654
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.49 E-value=1.2e-05 Score=75.16 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
+.++..|+.|+||+|. ++ .+|..+.+++.|++|...+|++. .+| ++.++++|+.+|+++|+++
T Consensus 403 ~~kle~LeeL~LSGNk-L~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNK-LT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HhchHHhHHHhcccch-hh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 5566777777777777 77 57777777777777777777766 455 6777777777777777766
No 22
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.48 E-value=2.2e-05 Score=70.53 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=41.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAG 169 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~ 169 (183)
+-.|+.|+.|++|+|. +.-..++.|.-+++|++|||++|+++---|.++.-+.+|+.|+|++|..
T Consensus 289 lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred ccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 4456677777777777 7766677777777777777777777743334444455555555555443
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.35 E-value=4.5e-05 Score=65.60 Aligned_cols=68 Identities=25% Similarity=0.353 Sum_probs=44.4
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccC------------------------CCCCCEEEccCCccccCCCCCccccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITV------------------------LSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~------------------------l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
|..|++|+.|++++|. +++.-+..|.. ++.|++|+|.+|+++---|..+..+.+|
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 7788888888888888 88765555554 4555556666666655555555555666
Q ss_pred cEEEcccCCcccc
Q 046467 160 YKIVLMLSAGVCF 172 (183)
Q Consensus 160 ~~L~L~~n~~~~~ 172 (183)
.+|+|..|+|.|-
T Consensus 349 ~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 349 STLNLLSNPFNCN 361 (498)
T ss_pred eeeehccCcccCc
Confidence 6666666666554
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.26 E-value=6.8e-05 Score=70.17 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=64.8
Q ss_pred EEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccE
Q 046467 82 VIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYK 161 (183)
Q Consensus 82 v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 161 (183)
+.+|++++...+.+|-. +..+.+|+.|+++.|. +. ..|.+..++++|+++.|..|.+. ..|.++..+++|+.
T Consensus 47 L~~l~lsnn~~~~fp~~-----it~l~~L~~ln~s~n~-i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQ-----ITLLSHLRQLNLSRNY-IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQY 118 (1081)
T ss_pred eEEeeccccccccCCch-----hhhHHHHhhcccchhh-Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccc
Confidence 56677776545666644 6777888888888887 66 67888888888888888888887 68888888888888
Q ss_pred EEcccCCcccc
Q 046467 162 IVLMLSAGVCF 172 (183)
Q Consensus 162 L~L~~n~~~~~ 172 (183)
|+++.|+|.=+
T Consensus 119 LdlS~N~f~~~ 129 (1081)
T KOG0618|consen 119 LDLSFNHFGPI 129 (1081)
T ss_pred cccchhccCCC
Confidence 88888888754
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.26 E-value=5.5e-05 Score=65.11 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=61.5
Q ss_pred CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEc-cCCccccCCCC-Ccccccc
Q 046467 81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLEL-TSNNLTGKLPN-FTVTYYI 158 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~L-s~N~l~G~iP~-~l~~l~~ 158 (183)
..+.|+|+..+-..||+. .|..+++|+.|||+.|+ ++-.-|+.|..+.+|..|-+ ++|+++ .+|. .++.+.+
T Consensus 68 ~tveirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~s 141 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSS 141 (498)
T ss_pred cceEEEeccCCcccCChh----hccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence 457777774322333322 18899999999999999 99888899999988877755 448888 5664 5778888
Q ss_pred ccEEEcccCCccc
Q 046467 159 FYKIVLMLSAGVC 171 (183)
Q Consensus 159 L~~L~L~~n~~~~ 171 (183)
|+.|.+-.|...|
T Consensus 142 lqrLllNan~i~C 154 (498)
T KOG4237|consen 142 LQRLLLNANHINC 154 (498)
T ss_pred HHHHhcChhhhcc
Confidence 8877765555554
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.24 E-value=0.00069 Score=63.33 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=19.7
Q ss_pred CCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 134 TIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 134 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+|++|++++|+++ .+|..+. ++|+.|+|++|++..
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence 4555566655555 3555443 356666666666553
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.17 E-value=0.00015 Score=68.86 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=59.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~ 173 (183)
|..++.|++||+++|. =-+.+|.+++++-+|++|+++...++ .+|..++++..|.+|+++.+.-..++
T Consensus 567 f~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred HhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc
Confidence 6678999999999887 55689999999999999999999998 89999999999999999877655444
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.16 E-value=7.3e-05 Score=61.61 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=59.5
Q ss_pred CCEEEEEeCccCC-CcccCCcCCccCCCCCCCcEEeccCCCCccc----cCCccccCC-CCCCEEEccCCccccCCC---
Q 046467 80 GSVIGVSLLWYEN-DNIIGELGRFKFSCFPNLRSFKIRSNYLLSG----SIPSEITVL-STIRTLELTSNNLTGKLP--- 150 (183)
Q Consensus 80 ~~v~~L~l~~l~~-g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G----~iP~~~~~l-~~L~~L~Ls~N~l~G~iP--- 150 (183)
..++.|++.+... +..+..+..+ ... ++|++|++++|+ +++ .+...+..+ ++|++|++++|++++..+
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l-~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESL-LRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHH-hcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 4778888874421 1122221111 112 559999999999 873 344456667 889999999999986433
Q ss_pred -CCccccccccEEEcccCCccc
Q 046467 151 -NFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 151 -~~l~~l~~L~~L~L~~n~~~~ 171 (183)
..+..+++|+.|+++.|++.+
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCch
Confidence 345567789999999998874
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.16 E-value=0.00012 Score=65.51 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=51.4
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
++.+.+|+.|++..|+ +. .+|++++.|+ |..||+|.|+++ .||-.+.+|+.|++|.|.+|++-
T Consensus 185 l~~l~slr~l~vrRn~-l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNH-LE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhHHHHHHHHHhhhh-hh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 5666777777777777 66 5777777444 888999999998 79999999999999999999875
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.16 E-value=0.00027 Score=60.58 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=45.4
Q ss_pred CCCCC-CCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFP-NLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~-~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
...+. +|+.|++++|. +. .+|..++.++.|+.|++++|+++ .+|...+..++|+.|+++.|++.-
T Consensus 135 ~~~~~~nL~~L~l~~N~-i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 135 IGLLKSNLKELDLSDNK-IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred cccchhhcccccccccc-hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc
Confidence 34443 67777777777 66 56666777777777777777777 566666677777777777777653
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.11 E-value=0.0013 Score=61.49 Aligned_cols=60 Identities=28% Similarity=0.436 Sum_probs=39.0
Q ss_pred CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
++|+.|++++|+ |+ .+|..+. ..|+.|+|++|++. .||..+. ++|+.|+|++|++.. +|.
T Consensus 220 ~nL~~L~Ls~N~-Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~ 279 (754)
T PRK15370 220 GNIKTLYANSNQ-LT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPE 279 (754)
T ss_pred cCCCEEECCCCc-cc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccc
Confidence 356666666666 66 4555442 35777777777776 6666554 478888888888773 443
No 32
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.00 E-value=0.00022 Score=36.19 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=12.7
Q ss_pred CCEEEccCCccccCCCCCccc
Q 046467 135 IRTLELTSNNLTGKLPNFTVT 155 (183)
Q Consensus 135 L~~L~Ls~N~l~G~iP~~l~~ 155 (183)
|++|||++|+|+ .||+++++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 66665544
No 33
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.98 E-value=0.00038 Score=62.81 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=36.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
|-++++|+.+++..|. ++ .||...+....|+.|+|.+|.++..--.++.-++.|+.|||+.|.++
T Consensus 98 f~nl~nLq~v~l~~N~-Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNE-LT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred HhcCCcceeeeeccch-hh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence 4566666666666666 65 46655555555655555555555333344555555555555555554
No 34
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.90 E-value=9.1e-05 Score=55.53 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=53.5
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
.+++.+++++...-.+|..+ -..++.++.|++++|. ++ .+|.++..++.|+.|+++.|.|. ..|..+..+.+|
T Consensus 53 ~el~~i~ls~N~fk~fp~kf----t~kf~t~t~lNl~~ne-is-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKF----TIKFPTATTLNLANNE-IS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred ceEEEEecccchhhhCCHHH----hhccchhhhhhcchhh-hh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 35666777654334444331 1244567777788887 77 57777878888888888888777 566666667777
Q ss_pred cEEEcccCC
Q 046467 160 YKIVLMLSA 168 (183)
Q Consensus 160 ~~L~L~~n~ 168 (183)
.+|+...|.
T Consensus 126 ~~Lds~~na 134 (177)
T KOG4579|consen 126 DMLDSPENA 134 (177)
T ss_pred HHhcCCCCc
Confidence 777655443
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.87 E-value=0.00014 Score=54.54 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCcccc-CCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEIT-VLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
+....+|+.+++++|. |. .+|+.+. ..+.+++|++++|.++ .+|.++..++.|+.|+++.|.+.-+
T Consensus 49 l~~~~el~~i~ls~N~-fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred HhCCceEEEEecccch-hh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc
Confidence 4556688889999999 98 5777664 4568999999999999 7999999999999999999998755
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.83 E-value=0.00042 Score=57.08 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=29.2
Q ss_pred CCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccccC----CCCCccccccccEEEcccCCcc
Q 046467 106 CFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLTGK----LPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
.+.+|+.|++++|. +++. ++..+..++.|++|++++|.+++. ++..+.++++|+.|++++|++.
T Consensus 163 ~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 163 ANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 33445555555555 5421 222333344555555555555422 1222334455555555555443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.80 E-value=0.00064 Score=64.60 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=56.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSA 168 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~ 168 (183)
++.|-+||+|+++... ++ .+|..+++++.|.+|++..+.....+|.-...+++|++|.+....
T Consensus 591 I~~Li~LryL~L~~t~-I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTG-IS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HhhhhhhhcccccCCC-cc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 8889999999999999 88 799999999999999999998777777766779999999997665
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.55 E-value=0.00067 Score=58.12 Aligned_cols=62 Identities=24% Similarity=0.406 Sum_probs=52.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSA 168 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~ 168 (183)
+..++.|+.|++++|+ ++ .+|...+.++.|+.|++++|+++ .+|..+.....|+.+.+..|+
T Consensus 159 ~~~l~~L~~L~l~~N~-l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 159 LRNLPNLKNLDLSFND-LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhccccccccccCCch-hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 6788899999999999 88 67877778888999999999998 788877677778888888884
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.45 E-value=0.0073 Score=56.77 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=35.1
Q ss_pred CCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCC---Ccc--------------ccccccEEEcccCCc
Q 046467 107 FPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPN---FTV--------------TYYIFYKIVLMLSAG 169 (183)
Q Consensus 107 l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~---~l~--------------~l~~L~~L~L~~n~~ 169 (183)
+++|++|++++|+ ++ .+|.. .++|+.|++++|.++ .+|. .+. ..++|+.|+|++|++
T Consensus 241 p~~Lk~LdLs~N~-Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L 314 (788)
T PRK15387 241 PPELRTLEVSGNQ-LT-SLPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL 314 (788)
T ss_pred CCCCcEEEecCCc-cC-cccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCCccccccccccccceeECCCCcc
Confidence 4677888888887 77 45643 244555555555554 2222 111 136777788877777
Q ss_pred ccc
Q 046467 170 VCF 172 (183)
Q Consensus 170 ~~~ 172 (183)
.+.
T Consensus 315 ~~L 317 (788)
T PRK15387 315 ASL 317 (788)
T ss_pred ccC
Confidence 754
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.40 E-value=0.001 Score=55.90 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=15.4
Q ss_pred CCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccc
Q 046467 107 FPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLT 146 (183)
Q Consensus 107 l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~ 146 (183)
+++++.|++|.|. +. .+ .++..+.+|+.||||+|.++
T Consensus 306 ~Pkir~L~lS~N~-i~-~v-~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 306 APKLRRLILSQNR-IR-TV-QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred ccceeEEeccccc-ee-ee-hhhhhcccceEeecccchhH
Confidence 3344444444444 33 11 12344444444444444443
No 41
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.36 E-value=0.0013 Score=33.24 Aligned_cols=22 Identities=41% Similarity=0.609 Sum_probs=18.5
Q ss_pred CCcEEeccCCCCccccCCccccCC
Q 046467 109 NLRSFKIRSNYLLSGSIPSEITVL 132 (183)
Q Consensus 109 ~L~~L~ls~N~~l~G~iP~~~~~l 132 (183)
+|++||+++|+ ++ .||++|++|
T Consensus 1 ~L~~Ldls~n~-l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN-LT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE-ES-EEGTTTTT-
T ss_pred CccEEECCCCc-CE-eCChhhcCC
Confidence 58999999999 99 899887654
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.27 E-value=0.0016 Score=54.73 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=54.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
+.....|+.+|||+|. ++ .|.++..-.++++.|++|+|.+. .+- .+..+++|+.|+|+.|-++
T Consensus 280 ~dTWq~LtelDLS~N~-I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNL-IT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred cchHhhhhhccccccc-hh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH
Confidence 5566789999999999 88 68888888999999999999997 344 4889999999999999876
No 43
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.003 Score=51.56 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=50.1
Q ss_pred CCCCCCCcEEeccCC--CCccccCCccccCCCCCCEEEccCCccccCCCCCcc---ccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSN--YLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTV---TYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N--~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~---~l~~L~~L~L~~n~~~ 170 (183)
+..|++|+.|.++.| + .++.++.-...+++|++|+++.|++. +++.+. .+.+|..|+++.+.-.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~-~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRR-VSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCccc-ccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCcc
Confidence 677889999999999 6 77777777777899999999999997 355444 5667778887766543
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.98 E-value=0.0013 Score=59.16 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=47.4
Q ss_pred CcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 110 LRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 110 L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
|+.|-+++|+ ++ .+|++++.+..|..||.+.|++. .+|++++.+.+|+.|++..|++.=
T Consensus 145 Lkvli~sNNk-l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~ 203 (722)
T KOG0532|consen 145 LKVLIVSNNK-LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED 203 (722)
T ss_pred ceeEEEecCc-cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh
Confidence 6777777777 66 68888887788888888888887 688888888888888888888763
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.81 E-value=0.016 Score=46.10 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=49.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCcccc-CCCCCCEEEccCCccccCCC--CCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEIT-VLSTIRTLELTSNNLTGKLP--NFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~-~l~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~~L~L~~n~~~ 170 (183)
+..+++|+.|.+++|+ ++- |-+.+. -+..|+.|.|.+|++. .+- ..+..+|+|++|.+-.|+..
T Consensus 60 lp~l~rL~tLll~nNr-It~-I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR-ITR-IDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCCccccceEEecCCc-cee-eccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchh
Confidence 6788999999999999 985 444444 4577999999999885 222 23778999999999888754
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.79 E-value=0.0062 Score=52.94 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=44.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC--Ccccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN--AEEVCAV 181 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~--~e~~~~~ 181 (183)
+..+++|++|++++|. ++...+ +..++.|+.|++++|.++ .++ .+..+++|+.++++.|.+.-.-+ .|..+.+
T Consensus 114 l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l 188 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDIENDELSELISL 188 (414)
T ss_pred hhhhhcchheeccccc-cccccc--hhhccchhhheeccCcch-hcc-CCccchhhhcccCCcchhhhhhhhhhhhccch
Confidence 3456777777777777 664322 445556777777777776 232 35557777777777777665444 3444443
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.48 E-value=0.0045 Score=53.82 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=54.3
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e 176 (183)
+..+++|+.+++.+|. +.. |...+..+.+|++|++++|.++...+ +..++.|+.|++++|.+..+-..+
T Consensus 91 l~~~~~l~~l~l~~n~-i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLE 159 (414)
T ss_pred cccccceeeeeccccc-hhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCc
Confidence 5677889999999999 884 44447789999999999999985433 677778999999999988554333
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.11 E-value=0.003 Score=58.48 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=41.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC-ccccccccEEEcccCCcccccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF-TVTYYIFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L~L~~n~~~~~~~~e 176 (183)
+--++.|+.|||+.|+ |+.. +.+..|.+|++|||++|.++ .+|.- ...+. |+.|+|++|.+.--.+.|
T Consensus 183 Lqll~ale~LnLshNk-~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL~gie 251 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNK-FTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTLRGIE 251 (1096)
T ss_pred HHHHHHhhhhccchhh-hhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhhhhHH
Confidence 3345677788888888 7632 26777888888888888887 56641 11222 555555555544433333
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.67 E-value=0.0023 Score=59.28 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=37.5
Q ss_pred CCCCCCCcEEeccCCCCccccCCc----------------------cccCCCCCCEEEccCCccccCCC-CCcccccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPS----------------------EITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFY 160 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~----------------------~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~ 160 (183)
+..+++|+.|||+.|. +. .+|. .+.++++|+.||+++|-+.+.-- ..+..+..|+
T Consensus 205 Lr~l~~LkhLDlsyN~-L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~ 282 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNC-LR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLI 282 (1096)
T ss_pred HHhcccccccccccch-hc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHH
Confidence 5677888889999888 77 4553 12334555555555555544321 1233455555
Q ss_pred EEEcccCCccc
Q 046467 161 KIVLMLSAGVC 171 (183)
Q Consensus 161 ~L~L~~n~~~~ 171 (183)
.|+|.+|++.|
T Consensus 283 ~L~LeGNPl~c 293 (1096)
T KOG1859|consen 283 VLWLEGNPLCC 293 (1096)
T ss_pred HHhhcCCcccc
Confidence 55555555544
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.012 Score=51.43 Aligned_cols=47 Identities=21% Similarity=0.163 Sum_probs=21.1
Q ss_pred CCCCCEEEccCCccccCCC--CCccccccccEEEcccCCcc--cccCCcccc
Q 046467 132 LSTIRTLELTSNNLTGKLP--NFTVTYYIFYKIVLMLSAGV--CFYNAEEVC 179 (183)
Q Consensus 132 l~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~~L~L~~n~~~--~~~~~e~~~ 179 (183)
++.|++|||++|++- ..| ...+.++.|..|+++.+... -++|.|+.|
T Consensus 245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchh
Confidence 444555555555543 122 23444445554444444444 234444443
No 51
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.31 E-value=0.026 Score=26.64 Aligned_cols=13 Identities=54% Similarity=0.876 Sum_probs=5.6
Q ss_pred CCCEEEccCCccc
Q 046467 134 TIRTLELTSNNLT 146 (183)
Q Consensus 134 ~L~~L~Ls~N~l~ 146 (183)
+|++|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555566655554
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.26 E-value=0.066 Score=43.80 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=44.2
Q ss_pred CCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCC--ccccCCCCCccccccccEEEcccCCcc
Q 046467 106 CFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSN--NLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N--~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
.+..|+.+++.+-. ++-. ..+-.+++|++|.+|.| ..++.++.-.-.+|+|++++|+.|...
T Consensus 41 ~~~~le~ls~~n~g-ltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccc-eeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34445555554444 4411 22446789999999999 777777776777899999999999876
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.23 E-value=0.11 Score=41.36 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=47.6
Q ss_pred CCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcc-ccccccEEEcccCCcc
Q 046467 107 FPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTV-TYYIFYKIVLMLSAGV 170 (183)
Q Consensus 107 l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~-~l~~L~~L~L~~n~~~ 170 (183)
+.....+|+++|. +- --+.+..+.+|++|.+++|+++ .|-+.+. -+++|+.|.|.+|++.
T Consensus 41 ~d~~d~iDLtdNd-l~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccccceecccccc-hh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh
Confidence 4567789999998 64 2245667899999999999999 4555566 4678999999999887
No 54
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.02 E-value=0.083 Score=27.32 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=11.4
Q ss_pred CCCCEEEccCCccccCCCCC
Q 046467 133 STIRTLELTSNNLTGKLPNF 152 (183)
Q Consensus 133 ~~L~~L~Ls~N~l~G~iP~~ 152 (183)
++|++|+|++|+++ .||+.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666666 45543
No 55
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.02 E-value=0.083 Score=27.32 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=11.4
Q ss_pred CCCCEEEccCCccccCCCCC
Q 046467 133 STIRTLELTSNNLTGKLPNF 152 (183)
Q Consensus 133 ~~L~~L~Ls~N~l~G~iP~~ 152 (183)
++|++|+|++|+++ .||+.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666666 45543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.97 E-value=0.1 Score=44.01 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=49.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+.++++|+.|+++.|. ++..|-..-..+++|++|-|.+..+.-+-- ..+..+|.++.|.++.|++.=
T Consensus 93 le~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq 160 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ 160 (418)
T ss_pred HhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh
Confidence 5688889999999998 886665443567888888888776654433 345678888888888887763
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.47 E-value=0.061 Score=50.15 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=31.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCccccccccEEEcccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYYIFYKIVLMLSA 168 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~L~~n~ 168 (183)
..++++|.+||+|+.+ ++- + ..++++++|+.|.+-+=.|.- ..=..+.+|++|+.||+|...
T Consensus 169 c~sFpNL~sLDIS~Tn-I~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTN-ISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hhccCccceeecCCCC-ccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 3455566666666655 442 1 335555666655554433321 111245566666666665443
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=0.15 Score=44.88 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=43.8
Q ss_pred CCCCCCcEEeccCCCCccccCC--ccccCCCCCCEEEccCCccccC-CCCC-----ccccccccEEEcccCCcc
Q 046467 105 SCFPNLRSFKIRSNYLLSGSIP--SEITVLSTIRTLELTSNNLTGK-LPNF-----TVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 105 ~~l~~L~~L~ls~N~~l~G~iP--~~~~~l~~L~~L~Ls~N~l~G~-iP~~-----l~~l~~L~~L~L~~n~~~ 170 (183)
..+..|+.|||++|+ +- ..+ ...+.++.|..|+++.+.+..- +|+. ...+++|++|++.+|+.+
T Consensus 243 ~i~~~L~~LdLs~N~-li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 243 KILQTLQELDLSNNN-LI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhhHHhhccccCCc-cc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 345678888888888 54 234 4467788888888888776532 2332 356788888888888874
No 59
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.57 E-value=0.038 Score=28.14 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=6.7
Q ss_pred CCCCEEEccCCcccc
Q 046467 133 STIRTLELTSNNLTG 147 (183)
Q Consensus 133 ~~L~~L~Ls~N~l~G 147 (183)
++|++|+|++|.+++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=87.82 E-value=0.2 Score=46.74 Aligned_cols=90 Identities=12% Similarity=0.086 Sum_probs=51.9
Q ss_pred ceeCCCCCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccc-cCCccccCCCCCCEEEccCCccccCC--C
Q 046467 74 ISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSG-SIPSEITVLSTIRTLELTSNNLTGKL--P 150 (183)
Q Consensus 74 v~C~~~~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G-~iP~~~~~l~~L~~L~Ls~N~l~G~i--P 150 (183)
..|.+..++..||+++-+-..+ -| +++|++|+.|.+.+=. |.- ..-..+.+|++|+.||+|+......- .
T Consensus 167 ~lc~sFpNL~sLDIS~TnI~nl---~G---IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii 239 (699)
T KOG3665|consen 167 QLCASFPNLRSLDISGTNISNL---SG---ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKII 239 (699)
T ss_pred HHhhccCccceeecCCCCccCc---HH---HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHH
Confidence 4455666677777664311111 11 6777788877766655 331 22235677888888888887654321 1
Q ss_pred C----CccccccccEEEcccCCcc
Q 046467 151 N----FTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 151 ~----~l~~l~~L~~L~L~~n~~~ 170 (183)
. .-..+|+|+.||.+.+...
T Consensus 240 ~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 240 EQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHHHhcccCccccEEecCCcchh
Confidence 1 1123778888887766544
No 61
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.49 E-value=0.012 Score=47.91 Aligned_cols=83 Identities=14% Similarity=0.020 Sum_probs=64.8
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
.+++-||++....-.+... +..+++|..|+++.|. +. .+|..+++...+..+++..|+.+ ..|.+.+..+.+
T Consensus 42 kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq-~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQ-IK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred ceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhh-Hh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4677777762211111111 5667888999999998 76 78999999999999999999988 799999999999
Q ss_pred cEEEcccCCcc
Q 046467 160 YKIVLMLSAGV 170 (183)
Q Consensus 160 ~~L~L~~n~~~ 170 (183)
+++++-.|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 99999988865
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.05 E-value=0.4 Score=40.60 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=47.9
Q ss_pred CCCCCcEEeccCCCCcccc--CCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 106 CFPNLRSFKIRSNYLLSGS--IPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~--iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
..++++.+||.+|. ++.. |-.-+.+++.|++|+|+.|.++..|-..-....+|++|-|.+.-++
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 46788999999999 7632 2223568999999999999999777654456678888887655443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.91 E-value=0.052 Score=45.39 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=35.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCc--cccCCCCCCEEEccCCccccCCCCC-----ccccccccEEE
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPS--EITVLSTIRTLELTSNNLTGKLPNF-----TVTYYIFYKIV 163 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~--~~~~l~~L~~L~Ls~N~l~G~iP~~-----l~~l~~L~~L~ 163 (183)
+..+++|+.|+|..|. +.. +.+ -+.++++|+.|.|..|.-.|.-+.. +.-+|+|+.||
T Consensus 59 l~rCtrLkElYLRkN~-I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKNC-IES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHHHHHHhcc-ccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5566677777777776 442 221 2456666777777777777666643 33466666665
No 64
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.57 E-value=0.87 Score=23.92 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=10.4
Q ss_pred CCCCCEEEccCCccc
Q 046467 132 LSTIRTLELTSNNLT 146 (183)
Q Consensus 132 l~~L~~L~Ls~N~l~ 146 (183)
+++|++|++++|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777764
No 65
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.53 E-value=0.82 Score=24.08 Aligned_cols=17 Identities=35% Similarity=0.776 Sum_probs=11.5
Q ss_pred CCCEEEccCCccccCCCC
Q 046467 134 TIRTLELTSNNLTGKLPN 151 (183)
Q Consensus 134 ~L~~L~Ls~N~l~G~iP~ 151 (183)
.|++|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4677777777776 4554
No 66
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.20 E-value=1.5 Score=23.16 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=9.2
Q ss_pred CCCCEEEccCCccc
Q 046467 133 STIRTLELTSNNLT 146 (183)
Q Consensus 133 ~~L~~L~Ls~N~l~ 146 (183)
+.|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35677777777664
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=79.31 E-value=0.84 Score=38.73 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=44.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCC---CccccccccEEEccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPN---FTVTYYIFYKIVLML 166 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~---~l~~l~~L~~L~L~~ 166 (183)
-.+.++|..|||+++.-++...-.++.++..|++|.++++.. .+|. .+.+.|.|.+|++++
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 346788999999887625544445677889999998888764 3554 466788899988753
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=77.56 E-value=4.5 Score=35.66 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=33.2
Q ss_pred CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccC
Q 046467 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLS 167 (183)
Q Consensus 108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n 167 (183)
.+|+.|++++...++ .+|..+ ..+|++|++++|..-..+|+. |+.|++..+
T Consensus 72 ~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n 122 (426)
T PRK15386 72 NELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIKGS 122 (426)
T ss_pred CCCcEEEccCCCCcc-cCCchh--hhhhhheEccCcccccccccc------cceEEeCCC
Confidence 368999998743164 567655 368999999998333367764 455555443
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=77.46 E-value=3.1 Score=35.02 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=48.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCcc----ccCCCCCCEEEccCCccccCCCC--------------CccccccccEEEcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSE----ITVLSTIRTLELTSNNLTGKLPN--------------FTVTYYIFYKIVLM 165 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~----~~~l~~L~~L~Ls~N~l~G~iP~--------------~l~~l~~L~~L~L~ 165 (183)
+-.+++|+..+||+|. |.-..|+. +..-+.|++|.+++|-+. ++-. ...+-|.|+++...
T Consensus 88 Llkcp~l~~v~LSDNA-fg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 88 LLKCPRLQKVDLSDNA-FGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HhcCCcceeeeccccc-cCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 6678899999999999 88888765 445678999999998773 4431 12245778888888
Q ss_pred cCCcc
Q 046467 166 LSAGV 170 (183)
Q Consensus 166 ~n~~~ 170 (183)
.|.+-
T Consensus 166 rNRle 170 (388)
T COG5238 166 RNRLE 170 (388)
T ss_pred cchhc
Confidence 88765
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=76.72 E-value=4.7 Score=35.57 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=16.1
Q ss_pred CCCEEEccCCccccCCCCCccccccccEEEcccC
Q 046467 134 TIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLS 167 (183)
Q Consensus 134 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n 167 (183)
+|++|+++++... .+|..+. .+|+.|+++.+
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4666666665543 2333232 35666666554
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=72.76 E-value=1.2 Score=38.31 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=37.6
Q ss_pred CCCCCCcEEeccCCCCccccCCcc----ccCCCCCCEEEccCCccccCCC--------------CCccccccccEEEccc
Q 046467 105 SCFPNLRSFKIRSNYLLSGSIPSE----ITVLSTIRTLELTSNNLTGKLP--------------NFTVTYYIFYKIVLML 166 (183)
Q Consensus 105 ~~l~~L~~L~ls~N~~l~G~iP~~----~~~l~~L~~L~Ls~N~l~G~iP--------------~~l~~l~~L~~L~L~~ 166 (183)
-..++|+++|||+|. |.-.-++. +.+++.|++|+|.+|-+. +.- ..+++-++|+++....
T Consensus 89 ~~~~~L~~ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred hcCCceeEeeccccc-cCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 344577788888877 65443332 345677777777777653 211 2234456677777666
Q ss_pred CCcc
Q 046467 167 SAGV 170 (183)
Q Consensus 167 n~~~ 170 (183)
|.+-
T Consensus 167 Nrle 170 (382)
T KOG1909|consen 167 NRLE 170 (382)
T ss_pred cccc
Confidence 6553
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=72.36 E-value=1.2 Score=38.14 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLT 146 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~ 146 (183)
+...++|+.|||.+|- |+-. +-..+..++.|++|+++++.+.
T Consensus 209 l~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccc
Confidence 4556667777777666 5421 1122334455555555555543
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=71.85 E-value=2.8 Score=35.20 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=46.1
Q ss_pred CCCCCCCcEEeccCCCCcccc----CCc-------cccCCCCCCEEEccCCccccCCCCCc----cccccccEEEcccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGS----IPS-------EITVLSTIRTLELTSNNLTGKLPNFT----VTYYIFYKIVLMLSA 168 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~----iP~-------~~~~l~~L~~L~Ls~N~l~G~iP~~l----~~l~~L~~L~L~~n~ 168 (183)
+.+-.+|+..++++- |+|. +|+ .+-+|++|+..+||+|-|.-..|+.+ ++-+.|++|.|++|.
T Consensus 54 ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 54 IANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 556667777776653 4543 333 34578999999999999999998764 467899999976554
No 74
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=69.49 E-value=0.3 Score=41.37 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=43.2
Q ss_pred CCcEEeccCCCCcccc-CCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 109 NLRSFKIRSNYLLSGS-IPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 109 ~L~~L~ls~N~~l~G~-iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
+|+++||++.. ++-. +---+.+|++|+-|.|.++++..+|-..++.-.+|+.|+|+.-++.
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc
Confidence 47888888777 5532 2223566788888888888888888777777778888887665543
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=59.49 E-value=21 Score=24.83 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLM 165 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~ 165 (183)
+...+.|+.+.+.+ . +.-.-...+..+++|+.+++..| +. .++ ..+.+. +|+.+.+.
T Consensus 54 F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 54 FSNCKSLESITFPN-N-LKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTT-TT-EEEEETS-T-T-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred eecccccccccccc-c-ccccccccccccccccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 55555666666654 3 33111233445666777766554 33 232 234444 66666654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=59.31 E-value=0.22 Score=40.72 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=54.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
+..+.+.+.||++.|+ +- .+-..+.-++.|..||++.|.+. -+|...++...+..+++..|+.+
T Consensus 38 i~~~kr~tvld~~s~r-~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~ 101 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR-LV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS 101 (326)
T ss_pred hhccceeeeehhhhhH-HH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh
Confidence 6677889999999998 65 45666777889999999999987 68999999999999998888876
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=58.85 E-value=28 Score=24.14 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=42.2
Q ss_pred CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC-CCccccccc
Q 046467 81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIF 159 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L 159 (183)
.++.+.+.+- .. .++.-.|...++|+.+++..+ +...-...+..+.+|+.+.+.+ .+. .++ ..+..+++|
T Consensus 13 ~l~~i~~~~~-~~----~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l 83 (129)
T PF13306_consen 13 NLESITFPNT-IK----KIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL 83 (129)
T ss_dssp T--EEEETST-------EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred CCCEEEECCC-ee----EeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence 5666666521 11 222223778888999998764 4432234577887899999976 333 244 345668999
Q ss_pred cEEEcccC
Q 046467 160 YKIVLMLS 167 (183)
Q Consensus 160 ~~L~L~~n 167 (183)
+.+++..+
T Consensus 84 ~~i~~~~~ 91 (129)
T PF13306_consen 84 KNIDIPSN 91 (129)
T ss_dssp CEEEETTT
T ss_pred cccccCcc
Confidence 99998655
No 78
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.92 E-value=3.6 Score=34.71 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=52.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC--CCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP--NFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
.-+++.|++|.|+-|. ++.- ..+..|++|++|+|-.|.+.. +- .-+-++|+|++|+|..|+=+|.-+
T Consensus 37 c~kMp~lEVLsLSvNk-IssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNK-ISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHhcccceeEEeeccc-cccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccc
Confidence 4578999999999999 8743 336789999999999997752 22 125588999999999998776633
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.03 E-value=14 Score=33.64 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=34.7
Q ss_pred CCCCCcEEeccCCCCcccc--CCccccCCCCCCEEEccCC--ccccCCCCCcccc--ccccEEEcccCCcc
Q 046467 106 CFPNLRSFKIRSNYLLSGS--IPSEITVLSTIRTLELTSN--NLTGKLPNFTVTY--YIFYKIVLMLSAGV 170 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~--iP~~~~~l~~L~~L~Ls~N--~l~G~iP~~l~~l--~~L~~L~L~~n~~~ 170 (183)
+.+.+..++|++|+ +--. +..--..-++|+.|+|++| .+. --.++.++ ..|+.|.+.+|+++
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 55667778888887 5410 1111122466788888888 222 11223322 34677787888776
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.94 E-value=33 Score=37.15 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=8.8
Q ss_pred CCCCCCCcEEeccCCC
Q 046467 104 FSCFPNLRSFKIRSNY 119 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~ 119 (183)
|..+++|+.|+|++|.
T Consensus 15 F~~L~sL~~LdLsgNP 30 (2740)
T TIGR00864 15 CANLCNLSEIDLSGNP 30 (2740)
T ss_pred hccCCCceEEEeeCCc
Confidence 4445555555555555
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.94 E-value=39 Score=16.97 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=6.7
Q ss_pred CCCCEEEccCC
Q 046467 133 STIRTLELTSN 143 (183)
Q Consensus 133 ~~L~~L~Ls~N 143 (183)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45666666655
Done!