Query 046467
Match_columns 183
No_of_seqs 186 out of 1865
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 21:57:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-19 4.9E-24 149.2 8.0 135 34-175 4-167 (313)
2 3rgz_A Protein brassinosteroid 99.7 3.4E-19 1.2E-23 162.9 4.1 130 37-174 13-168 (768)
3 4eco_A Uncharacterized protein 99.7 8.3E-19 2.9E-23 157.4 5.8 77 37-118 31-115 (636)
4 4ecn_A Leucine-rich repeat pro 99.7 1.1E-17 3.9E-22 155.4 5.3 129 36-175 269-509 (876)
5 4fcg_A Uncharacterized protein 99.6 1.1E-15 3.6E-20 126.9 3.9 132 34-177 25-170 (328)
6 3rgz_A Protein brassinosteroid 99.4 1.2E-13 4.1E-18 126.2 7.6 91 81-177 633-724 (768)
7 1w8a_A SLIT protein; signaling 99.4 1E-12 3.5E-17 100.8 9.1 71 104-175 74-144 (192)
8 3e6j_A Variable lymphocyte rec 99.4 5.5E-12 1.9E-16 99.3 11.6 110 61-172 11-150 (229)
9 3g39_A Variable lymphocyte rec 99.3 5.8E-12 2E-16 95.0 9.5 100 69-174 9-119 (170)
10 2o6r_A Variable lymphocyte rec 99.3 2.7E-11 9.2E-16 91.2 10.3 68 105-173 73-140 (177)
11 2o6s_A Variable lymphocyte rec 99.3 3.3E-11 1.1E-15 92.8 10.3 67 104-171 72-138 (208)
12 2o6q_A Variable lymphocyte rec 99.2 4.8E-11 1.6E-15 95.7 9.7 66 104-170 57-122 (270)
13 2wfh_A SLIT homolog 2 protein 99.2 5.8E-11 2E-15 91.3 9.4 69 104-173 74-142 (193)
14 4fcg_A Uncharacterized protein 99.2 4.9E-11 1.7E-15 98.7 8.7 72 104-176 225-296 (328)
15 2r9u_A Variable lymphocyte rec 99.2 7.8E-11 2.7E-15 89.2 9.0 88 81-174 34-122 (174)
16 2v70_A SLIT-2, SLIT homolog 2 99.2 6.3E-11 2.2E-15 92.7 8.5 71 104-175 101-171 (220)
17 2v70_A SLIT-2, SLIT homolog 2 99.2 1.1E-10 3.6E-15 91.4 9.6 70 104-174 77-146 (220)
18 2ifg_A High affinity nerve gro 99.2 8.7E-11 3E-15 97.1 9.5 100 69-174 8-120 (347)
19 2v9t_B SLIT homolog 2 protein 99.2 1.7E-10 5.8E-15 90.3 9.8 69 104-173 76-144 (220)
20 2z81_A CD282 antigen, TOLL-lik 99.2 6.9E-11 2.4E-15 102.9 8.2 71 104-175 70-141 (549)
21 3m19_A Variable lymphocyte rec 99.1 1.7E-10 5.7E-15 91.6 7.9 66 104-170 55-120 (251)
22 1ogq_A PGIP-2, polygalacturona 99.1 4.3E-11 1.5E-15 98.2 4.6 72 104-176 121-193 (313)
23 1w8a_A SLIT protein; signaling 99.1 1.3E-10 4.5E-15 88.9 7.0 103 69-175 8-120 (192)
24 2v9t_B SLIT homolog 2 protein 99.1 3.5E-10 1.2E-14 88.5 9.0 70 104-174 100-169 (220)
25 2o6r_A Variable lymphocyte rec 99.1 3.1E-10 1.1E-14 85.3 8.4 101 69-174 7-117 (177)
26 2wfh_A SLIT homolog 2 protein 99.1 3.3E-10 1.1E-14 87.0 8.6 88 81-174 32-119 (193)
27 3v47_A TOLL-like receptor 5B a 99.1 2.8E-10 9.7E-15 96.8 8.5 70 104-174 75-146 (455)
28 2r9u_A Variable lymphocyte rec 99.1 8.4E-10 2.9E-14 83.4 10.1 84 83-174 15-98 (174)
29 4g8a_A TOLL-like receptor 4; l 99.1 3.7E-10 1.2E-14 99.1 8.8 70 104-174 514-584 (635)
30 4b8c_D Glucose-repressible alc 99.1 3.3E-10 1.1E-14 103.3 8.7 68 104-175 243-310 (727)
31 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 81.9 10.0 84 83-174 12-95 (170)
32 2je0_A Acidic leucine-rich nuc 99.0 1.7E-10 5.9E-15 84.3 4.7 88 80-174 42-130 (149)
33 2o6s_A Variable lymphocyte rec 99.0 1.3E-09 4.4E-14 83.8 9.7 90 80-174 76-165 (208)
34 3rfs_A Internalin B, repeat mo 99.0 1.1E-09 3.9E-14 87.8 9.7 70 104-174 153-222 (272)
35 3e6j_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 86.2 9.0 69 104-174 108-176 (229)
36 1dce_A Protein (RAB geranylger 99.0 6.8E-10 2.3E-14 98.7 8.1 88 80-175 463-551 (567)
37 3m19_A Variable lymphocyte rec 99.0 1.7E-09 5.7E-14 85.7 9.4 68 104-172 127-194 (251)
38 2ifg_A High affinity nerve gro 99.0 6.5E-10 2.2E-14 91.8 7.1 69 104-173 27-96 (347)
39 2z80_A TOLL-like receptor 2, v 99.0 8.4E-10 2.9E-14 91.4 7.7 84 81-170 53-137 (353)
40 3j0a_A TOLL-like receptor 5; m 99.0 1.8E-09 6E-14 99.6 10.4 72 104-176 69-142 (844)
41 4eco_A Uncharacterized protein 99.0 2.5E-10 8.6E-15 102.3 4.3 71 104-175 202-293 (636)
42 2ell_A Acidic leucine-rich nuc 99.0 7.3E-10 2.5E-14 82.5 5.6 88 80-174 49-137 (168)
43 3v47_A TOLL-like receptor 5B a 99.0 1.9E-09 6.6E-14 91.6 8.9 70 104-174 343-412 (455)
44 4b8c_D Glucose-repressible alc 99.0 3.1E-10 1.1E-14 103.5 4.2 69 104-175 266-334 (727)
45 4g8a_A TOLL-like receptor 4; l 98.9 2.1E-09 7.1E-14 94.2 8.9 72 104-176 490-561 (635)
46 3rfs_A Internalin B, repeat mo 98.9 4.7E-09 1.6E-13 84.1 9.9 70 104-174 129-198 (272)
47 4ezg_A Putative uncharacterize 98.9 1.3E-09 4.5E-14 83.4 5.9 67 104-172 108-174 (197)
48 2z63_A TOLL-like receptor 4, v 98.9 2.9E-09 1E-13 92.8 8.6 71 104-175 466-536 (570)
49 3vq2_A TLR4, TOLL-like recepto 98.9 5.3E-09 1.8E-13 92.1 10.1 66 104-170 76-141 (606)
50 1ozn_A Reticulon 4 receptor; N 98.9 1.9E-09 6.7E-14 86.6 6.6 71 104-175 173-243 (285)
51 4ezg_A Putative uncharacterize 98.9 2.8E-09 9.5E-14 81.6 7.0 86 80-172 66-151 (197)
52 2ell_A Acidic leucine-rich nuc 98.9 2.5E-09 8.6E-14 79.5 6.2 72 104-176 91-166 (168)
53 3oja_B Anopheles plasmodium-re 98.9 2.2E-09 7.4E-14 95.3 6.7 70 104-174 95-164 (597)
54 3o6n_A APL1; leucine-rich repe 98.9 2.1E-09 7.3E-14 90.0 6.4 69 104-174 89-158 (390)
55 2xot_A Amphoterin-induced prot 98.9 6.4E-09 2.2E-13 86.8 8.9 67 104-171 84-150 (361)
56 2z66_A Variable lymphocyte rec 98.9 5.9E-09 2E-13 84.5 8.4 70 104-174 195-265 (306)
57 2o6q_A Variable lymphocyte rec 98.9 1.1E-08 3.9E-13 81.7 9.8 70 104-174 153-222 (270)
58 1wwl_A Monocyte differentiatio 98.9 1.3E-09 4.3E-14 89.2 4.2 87 81-172 96-188 (312)
59 1p9a_G Platelet glycoprotein I 98.9 1.5E-08 5.2E-13 82.3 10.3 66 104-170 96-161 (290)
60 1ozn_A Reticulon 4 receptor; N 98.8 1.6E-08 5.4E-13 81.2 10.1 68 104-171 76-143 (285)
61 2z62_A TOLL-like receptor 4, v 98.8 1E-08 3.5E-13 82.0 8.8 67 104-171 72-138 (276)
62 3zyi_A Leucine-rich repeat-con 98.8 1.2E-08 4E-13 87.4 9.4 85 81-171 76-161 (452)
63 1dce_A Protein (RAB geranylger 98.8 5.2E-09 1.8E-13 93.0 7.4 85 81-175 442-527 (567)
64 3t6q_A CD180 antigen; protein- 98.8 8.7E-09 3E-13 90.8 8.7 85 81-171 34-119 (606)
65 2z66_A Variable lymphocyte rec 98.8 1.1E-08 3.7E-13 82.9 8.6 71 104-175 171-241 (306)
66 4ecn_A Leucine-rich repeat pro 98.8 9.6E-09 3.3E-13 95.6 9.0 90 81-178 729-826 (876)
67 2xot_A Amphoterin-induced prot 98.8 1E-08 3.5E-13 85.5 8.4 65 104-170 108-176 (361)
68 2ft3_A Biglycan; proteoglycan, 98.8 1.9E-08 6.6E-13 82.5 9.6 93 69-170 33-136 (332)
69 3zyj_A Leucine-rich repeat-con 98.8 1.3E-08 4.3E-13 86.9 8.7 69 104-173 227-295 (440)
70 3zyi_A Leucine-rich repeat-con 98.8 1.2E-08 4.1E-13 87.4 8.4 70 104-174 238-307 (452)
71 2id5_A Lingo-1, leucine rich r 98.8 2.3E-08 7.9E-13 85.7 10.1 66 104-170 52-117 (477)
72 2z7x_B TOLL-like receptor 1, v 98.8 9.4E-09 3.2E-13 89.0 7.6 89 80-174 324-416 (520)
73 3vq2_A TLR4, TOLL-like recepto 98.8 2E-08 6.9E-13 88.4 9.5 90 80-175 80-171 (606)
74 1p9a_G Platelet glycoprotein I 98.8 2.9E-08 9.9E-13 80.6 9.3 68 104-173 144-211 (290)
75 2je0_A Acidic leucine-rich nuc 98.8 7E-09 2.4E-13 75.5 5.0 85 80-172 17-103 (149)
76 1a9n_A U2A', U2A'; complex (nu 98.8 1.3E-08 4.5E-13 76.4 6.4 83 81-172 43-128 (176)
77 3t6q_A CD180 antigen; protein- 98.8 8.3E-09 2.8E-13 90.9 6.1 69 104-174 496-564 (606)
78 1xku_A Decorin; proteoglycan, 98.8 4.1E-08 1.4E-12 80.4 9.9 66 104-171 212-277 (330)
79 2z81_A CD282 antigen, TOLL-lik 98.7 1.6E-08 5.4E-13 88.0 7.6 68 104-174 447-514 (549)
80 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 2E-08 6.8E-13 88.1 8.3 92 72-172 44-136 (562)
81 3oja_A Leucine-rich immune mol 98.7 1.6E-08 5.3E-13 88.0 7.6 62 106-171 167-228 (487)
82 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 3.7E-08 1.3E-12 86.4 9.9 83 80-171 76-160 (562)
83 2id5_A Lingo-1, leucine rich r 98.7 2E-08 7E-13 86.1 8.1 70 104-174 268-337 (477)
84 2z7x_B TOLL-like receptor 1, v 98.7 8.5E-09 2.9E-13 89.3 5.7 86 80-174 21-108 (520)
85 2z63_A TOLL-like receptor 4, v 98.7 1.7E-08 5.7E-13 87.9 7.6 70 104-174 441-511 (570)
86 3cvr_A Invasion plasmid antige 98.7 1.2E-08 4.1E-13 90.8 6.6 97 64-171 38-154 (571)
87 2xwt_C Thyrotropin receptor; s 98.7 3E-08 1E-12 77.7 8.1 68 104-171 51-119 (239)
88 1xku_A Decorin; proteoglycan, 98.7 5E-08 1.7E-12 79.9 9.5 97 68-172 30-136 (330)
89 3oja_B Anopheles plasmodium-re 98.7 4.7E-08 1.6E-12 86.7 9.4 67 104-171 119-185 (597)
90 3zyj_A Leucine-rich repeat-con 98.7 5.3E-08 1.8E-12 83.0 9.4 68 104-172 203-270 (440)
91 1ziw_A TOLL-like receptor 3; i 98.7 3.7E-08 1.3E-12 87.9 8.8 68 104-172 93-160 (680)
92 1a9n_A U2A', U2A'; complex (nu 98.7 3.9E-08 1.3E-12 73.8 7.5 83 80-172 19-103 (176)
93 2z62_A TOLL-like receptor 4, v 98.7 5.4E-08 1.8E-12 77.7 8.7 69 104-173 96-165 (276)
94 3o6n_A APL1; leucine-rich repe 98.7 7.8E-08 2.7E-12 80.5 9.6 66 104-171 113-179 (390)
95 1ziw_A TOLL-like receptor 3; i 98.7 7.1E-08 2.4E-12 86.1 9.1 70 104-174 117-188 (680)
96 3oja_A Leucine-rich immune mol 98.6 1.7E-08 5.9E-13 87.7 4.8 67 104-173 140-207 (487)
97 4glp_A Monocyte differentiatio 98.6 3.8E-08 1.3E-12 80.1 6.4 83 82-170 93-182 (310)
98 3j0a_A TOLL-like receptor 5; m 98.6 6.8E-08 2.3E-12 89.0 8.5 101 69-176 14-116 (844)
99 4glp_A Monocyte differentiatio 98.6 4.2E-08 1.4E-12 79.9 5.6 63 106-172 222-287 (310)
100 2ft3_A Biglycan; proteoglycan, 98.6 1.5E-07 5E-12 77.2 8.9 87 82-177 35-121 (332)
101 4fmz_A Internalin; leucine ric 98.6 5.5E-08 1.9E-12 79.9 6.2 76 104-182 261-336 (347)
102 1wwl_A Monocyte differentiatio 98.6 3.3E-08 1.1E-12 80.7 4.5 68 106-175 93-167 (312)
103 1h6t_A Internalin B; cell adhe 98.5 2.1E-07 7.3E-12 75.4 8.4 61 106-171 132-192 (291)
104 2z80_A TOLL-like receptor 2, v 98.5 1.4E-07 4.9E-12 77.9 7.4 86 80-173 76-165 (353)
105 2xwt_C Thyrotropin receptor; s 98.5 9.7E-08 3.3E-12 74.7 6.0 61 104-167 76-140 (239)
106 4ay9_X Follicle-stimulating ho 98.5 1.4E-07 4.9E-12 78.2 7.2 101 69-174 9-121 (350)
107 3o53_A Protein LRIM1, AGAP0063 98.5 1.3E-07 4.6E-12 77.2 6.6 65 105-172 188-252 (317)
108 3bz5_A Internalin-J, INLJ; leu 98.5 4.5E-07 1.6E-11 78.2 10.3 62 104-172 102-163 (457)
109 3rw6_A Nuclear RNA export fact 98.5 8E-08 2.7E-12 77.9 5.1 68 105-175 167-238 (267)
110 3bz5_A Internalin-J, INLJ; leu 98.5 4.1E-07 1.4E-11 78.5 9.3 43 104-150 208-250 (457)
111 1h6t_A Internalin B; cell adhe 98.5 2.6E-07 8.8E-12 74.9 7.2 66 104-174 108-173 (291)
112 1h6u_A Internalin H; cell adhe 98.5 3.5E-07 1.2E-11 74.7 8.0 40 129-170 147-186 (308)
113 1m9s_A Internalin B; cell inva 98.5 2.9E-07 1E-11 82.3 8.2 63 104-171 127-189 (605)
114 1xeu_A Internalin C; cellular 98.5 3.5E-07 1.2E-11 73.2 7.6 90 80-181 63-152 (263)
115 3cvr_A Invasion plasmid antige 98.5 6.1E-07 2.1E-11 79.8 9.8 57 109-175 121-177 (571)
116 1ds9_A Outer arm dynein; leuci 98.5 3.3E-09 1.1E-13 81.2 -4.3 82 80-171 48-129 (198)
117 1m9s_A Internalin B; cell inva 98.5 3.9E-07 1.3E-11 81.5 8.4 73 104-181 105-177 (605)
118 1h6u_A Internalin H; cell adhe 98.4 3.9E-07 1.3E-11 74.4 7.5 91 80-181 63-153 (308)
119 3o53_A Protein LRIM1, AGAP0063 98.4 1.4E-07 4.7E-12 77.1 4.6 65 104-171 140-205 (317)
120 1o6v_A Internalin A; bacterial 98.4 3.7E-07 1.3E-11 78.3 7.0 67 104-175 305-371 (466)
121 4fmz_A Internalin; leucine ric 98.4 2.1E-07 7.2E-12 76.3 5.1 64 104-170 283-346 (347)
122 1o6v_A Internalin A; bacterial 98.4 5.7E-07 2E-11 77.1 7.3 83 80-173 68-150 (466)
123 1xeu_A Internalin C; cellular 98.4 1.4E-06 4.9E-11 69.6 9.0 63 104-171 124-186 (263)
124 3g06_A SSPH2 (leucine-rich rep 98.3 8.3E-07 2.9E-11 79.7 7.4 64 105-174 238-301 (622)
125 1jl5_A Outer protein YOPM; leu 98.3 8.4E-07 2.9E-11 76.4 6.9 64 107-175 336-416 (454)
126 2ast_B S-phase kinase-associat 98.3 1.2E-07 4.2E-12 77.3 1.4 66 104-170 114-182 (336)
127 1jl5_A Outer protein YOPM; leu 98.3 2.7E-06 9.3E-11 73.2 8.6 61 104-171 149-209 (454)
128 3g06_A SSPH2 (leucine-rich rep 98.2 7.8E-07 2.7E-11 79.9 4.4 93 61-169 13-113 (622)
129 2ca6_A RAN GTPase-activating p 98.2 2.2E-07 7.6E-12 77.7 -0.1 69 104-173 240-319 (386)
130 2ast_B S-phase kinase-associat 98.1 2E-07 6.7E-12 76.1 -0.9 62 105-167 90-152 (336)
131 2ca6_A RAN GTPase-activating p 98.1 1.2E-06 4E-11 73.2 2.6 66 104-170 90-172 (386)
132 1ds9_A Outer arm dynein; leuci 98.1 3.6E-07 1.2E-11 69.7 -0.6 64 104-171 44-107 (198)
133 3goz_A Leucine-rich repeat-con 98.0 1.2E-06 4.1E-11 72.8 1.2 63 108-171 80-152 (362)
134 3goz_A Leucine-rich repeat-con 98.0 1.8E-06 6.1E-11 71.7 1.3 92 80-173 22-125 (362)
135 3rw6_A Nuclear RNA export fact 97.9 6.9E-06 2.4E-10 66.5 3.4 77 80-163 170-257 (267)
136 3rfe_A Platelet glycoprotein I 97.7 9.6E-05 3.3E-09 53.1 7.0 59 112-173 12-71 (130)
137 4ay9_X Follicle-stimulating ho 97.7 7.8E-05 2.7E-09 61.5 6.8 64 108-173 30-96 (350)
138 1z7x_W Ribonuclease inhibitor; 97.6 3.2E-06 1.1E-10 71.6 -2.1 68 104-172 337-413 (461)
139 1z7x_W Ribonuclease inhibitor; 97.4 2E-05 7E-10 66.6 -0.1 62 109-171 86-156 (461)
140 3ogk_B Coronatine-insensitive 97.4 2.7E-05 9.1E-10 68.0 0.6 65 106-171 461-527 (592)
141 3un9_A NLR family member X1; l 97.2 4.5E-05 1.5E-09 64.1 0.1 65 105-170 180-252 (372)
142 3un9_A NLR family member X1; l 97.1 0.00013 4.6E-09 61.2 1.2 64 106-170 153-224 (372)
143 2ra8_A Uncharacterized protein 96.9 0.00014 4.7E-09 61.1 0.2 64 106-170 250-320 (362)
144 3ogk_B Coronatine-insensitive 96.9 0.00012 4.2E-09 63.8 -0.2 64 106-170 162-233 (592)
145 1io0_A Tropomodulin; LRR prote 96.8 0.00032 1.1E-08 53.0 1.1 65 105-170 90-164 (185)
146 2p1m_B Transport inhibitor res 96.8 0.00021 7E-09 62.3 -0.1 62 107-169 455-518 (594)
147 1io0_A Tropomodulin; LRR prote 96.4 0.00068 2.3E-08 51.1 0.7 88 80-170 36-136 (185)
148 2p1m_B Transport inhibitor res 96.4 0.00042 1.4E-08 60.3 -0.7 63 106-170 430-494 (594)
149 3sb4_A Hypothetical leucine ri 96.3 0.012 4.1E-07 47.7 7.4 84 80-170 226-310 (329)
150 3sb4_A Hypothetical leucine ri 95.9 0.013 4.4E-07 47.6 6.0 56 107-166 225-283 (329)
151 3rfe_A Platelet glycoprotein I 95.5 0.024 8.1E-07 40.3 5.3 38 108-146 31-68 (130)
152 3e4g_A ATP synthase subunit S, 94.8 0.0071 2.4E-07 45.7 1.0 85 80-168 61-150 (176)
153 4fdw_A Leucine rich hypothetic 93.6 0.14 4.8E-06 43.1 6.5 60 104-167 176-236 (401)
154 4fdw_A Leucine rich hypothetic 92.6 0.21 7.3E-06 41.9 6.1 16 104-119 267-282 (401)
155 3e4g_A ATP synthase subunit S, 92.3 0.036 1.2E-06 41.8 0.9 60 108-168 61-125 (176)
156 2ra8_A Uncharacterized protein 92.1 0.055 1.9E-06 45.1 1.9 65 106-171 217-293 (362)
157 4h09_A Hypothetical leucine ri 89.0 0.69 2.4E-05 37.7 5.9 60 104-166 282-342 (379)
158 1pgv_A TMD-1, tropomodulin TMD 87.7 0.22 7.4E-06 38.1 1.8 84 80-167 41-136 (197)
159 4fs7_A Uncharacterized protein 86.8 1.1 3.8E-05 36.9 5.8 59 104-167 316-376 (394)
160 4gt6_A Cell surface protein; l 86.2 1.7 5.9E-05 35.7 6.7 60 104-168 307-368 (394)
161 1pgv_A TMD-1, tropomodulin TMD 81.1 0.39 1.3E-05 36.7 0.6 84 80-168 70-168 (197)
162 4h09_A Hypothetical leucine ri 80.1 4.3 0.00015 32.9 6.7 60 104-167 259-320 (379)
163 4gt6_A Cell surface protein; l 71.6 9.1 0.00031 31.2 6.5 59 104-167 284-344 (394)
164 4fs7_A Uncharacterized protein 67.4 9.9 0.00034 31.0 5.8 59 104-167 293-353 (394)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1.4e-19 Score=149.16 Aligned_cols=135 Identities=19% Similarity=0.251 Sum_probs=90.4
Q ss_pred CCCCCchhHHHHHHHHcCCCCCCCCCCCCCC-CCCCCc--cccceeCCC---CCEEEEEeCccC-CC--cccCCcCCcc-
Q 046467 34 AGLLSSPIQLEREALLATGWWVNNWATTGNY-TSDHCK--WTGISCNSA---GSVIGVSLLWYE-ND--NIIGELGRFK- 103 (183)
Q Consensus 34 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~W~-~~~~C~--w~gv~C~~~---~~v~~L~l~~l~-~g--~l~~~~g~l~- 103 (183)
.++|..++.++|+++.+.. .+.+|. +.++|. |.||.|+.. ++|+.|++.+.. .+ .+|..++.++
T Consensus 4 ~~~~~~aL~~~k~~~~~~~------~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 4 NPQDKQALLQIKKDLGNPT------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CHHHHHHHHHHHHHTTCCG------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CHHHHHHHHHHHHhcCCcc------cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 3445677888888774322 267884 668998 999999864 799999998553 44 5555432221
Q ss_pred -------------------CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEc
Q 046467 104 -------------------FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVL 164 (183)
Q Consensus 104 -------------------~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L 164 (183)
++++++|++|++++|+ ++|.+|..+.++++|++|++++|.++|.+|..++++++|++|+|
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 4556666666666666 66666666666666666666666666666666666666777777
Q ss_pred ccCCcccccCC
Q 046467 165 MLSAGVCFYNA 175 (183)
Q Consensus 165 ~~n~~~~~~~~ 175 (183)
++|++.+.+|.
T Consensus 157 ~~N~l~~~~p~ 167 (313)
T 1ogq_A 157 DGNRISGAIPD 167 (313)
T ss_dssp CSSCCEEECCG
T ss_pred cCCcccCcCCH
Confidence 66666666554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=3.4e-19 Score=162.86 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=103.5
Q ss_pred CCchhHHHHHHHHcCCCCCCCCCCCCC-CCCCCCccccceeCCCCCEEEEEeCccC-CCc---ccCCcCCcc--------
Q 046467 37 LSSPIQLEREALLATGWWVNNWATTGN-YTSDHCKWTGISCNSAGSVIGVSLLWYE-NDN---IIGELGRFK-------- 103 (183)
Q Consensus 37 ~~~~l~~~~~~l~~~~~~~~~~~~~~W-~~~~~C~w~gv~C~~~~~v~~L~l~~l~-~g~---l~~~~g~l~-------- 103 (183)
|..++.++|+++.+ |. .+.+| .+.+||.|.||.|+ .++|+.|++.+.. .|. +|+.++.+.
T Consensus 13 ~~~all~~k~~~~~-----~~-~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~ 85 (768)
T 3rgz_A 13 EIHQLISFKDVLPD-----KN-LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS 85 (768)
T ss_dssp HHHHHHHHHTTCSC-----TT-SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECT
T ss_pred HHHHHHHHHhhCCC-----cc-cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCc
Confidence 44556666655532 23 48899 47899999999998 6899999998543 454 554443331
Q ss_pred ----------CCCCCCCcEEeccCCCCccccCCc--cccCCCCCCEEEccCCccccCCCCCc-cccccccEEEcccCCcc
Q 046467 104 ----------FSCFPNLRSFKIRSNYLLSGSIPS--EITVLSTIRTLELTSNNLTGKLPNFT-VTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ----------~~~l~~L~~L~ls~N~~l~G~iP~--~~~~l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~L~~n~~~ 170 (183)
++++++|++|++++|. ++|.+|. .++++++|++|++++|.++|.+|..+ .++++|++|+|++|++.
T Consensus 86 ~~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 86 NSHINGSVSGFKCSASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp TSCEEECCCCCCCCTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred CCCcCCCchhhccCCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence 7788999999999999 9999998 89999999999999999999999876 78888888888888887
Q ss_pred cccC
Q 046467 171 CFYN 174 (183)
Q Consensus 171 ~~~~ 174 (183)
+..|
T Consensus 165 ~~~~ 168 (768)
T 3rgz_A 165 GANV 168 (768)
T ss_dssp EETH
T ss_pred CcCC
Confidence 6654
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=8.3e-19 Score=157.41 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=53.3
Q ss_pred CCchhHHHHHHHHcCCCCCCC---CCCCCCC-CCCCCcc---ccceeCCCCCEEEEEeCccC-CCcccCCcCCccCCCCC
Q 046467 37 LSSPIQLEREALLATGWWVNN---WATTGNY-TSDHCKW---TGISCNSAGSVIGVSLLWYE-NDNIIGELGRFKFSCFP 108 (183)
Q Consensus 37 ~~~~l~~~~~~l~~~~~~~~~---~~~~~W~-~~~~C~w---~gv~C~~~~~v~~L~l~~l~-~g~l~~~~g~l~~~~l~ 108 (183)
|..||.++++++....|.... ....+|+ +.++|.| .||.|+..++|++|++.+.+ .|.+|+. +++++
T Consensus 31 d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~-----l~~L~ 105 (636)
T 4eco_A 31 DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA-----IGQLT 105 (636)
T ss_dssp HHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGG-----GGGCT
T ss_pred HHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChH-----HhcCc
Confidence 556777777777665554211 1234784 6789999 99999988999999998554 5677766 55666
Q ss_pred CCcEEeccCC
Q 046467 109 NLRSFKIRSN 118 (183)
Q Consensus 109 ~L~~L~ls~N 118 (183)
+|++|++++|
T Consensus 106 ~L~~L~Ls~N 115 (636)
T 4eco_A 106 ELEVLALGSH 115 (636)
T ss_dssp TCCEEESCCG
T ss_pred cceEEECcCC
Confidence 6666666655
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.1e-17 Score=155.40 Aligned_cols=129 Identities=13% Similarity=0.179 Sum_probs=90.8
Q ss_pred CCCchhHHHHHHHHcCCCCCCCCCCCC-CCCCCC--Ccc------------ccceeCCCCCEEEEEeCccC-CCcccCCc
Q 046467 36 LLSSPIQLEREALLATGWWVNNWATTG-NYTSDH--CKW------------TGISCNSAGSVIGVSLLWYE-NDNIIGEL 99 (183)
Q Consensus 36 ~~~~~l~~~~~~l~~~~~~~~~~~~~~-W~~~~~--C~w------------~gv~C~~~~~v~~L~l~~l~-~g~l~~~~ 99 (183)
.|..+|.++|+++.+.. |...+ |...++ |.| .||.|+..++|+.|+|.+.+ .|.+|+.
T Consensus 269 ~d~~ALl~~k~~l~~~~-----W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~- 342 (876)
T 4ecn_A 269 KDYKALKAIWEALDGKN-----WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA- 342 (876)
T ss_dssp HHHHHHHHHHHHTTGGG-----CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGG-
T ss_pred HHHHHHHHHHHHcCCCC-----CCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchH-
Confidence 35567777777764432 22222 323455 999 99999988999999998654 5777766
Q ss_pred CCccCCCCCCCcEEec-cCCCCcccc------------------------------------------------------
Q 046467 100 GRFKFSCFPNLRSFKI-RSNYLLSGS------------------------------------------------------ 124 (183)
Q Consensus 100 g~l~~~~l~~L~~L~l-s~N~~l~G~------------------------------------------------------ 124 (183)
+++|++|++|+| ++|. ++|.
T Consensus 343 ----l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 343 ----IGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp ----GGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred ----HhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 666777777777 5555 5544
Q ss_pred ----------------------CCccccCCCCCCEEEccCCcccc-----------------CCCCCcc--ccccccEEE
Q 046467 125 ----------------------IPSEITVLSTIRTLELTSNNLTG-----------------KLPNFTV--TYYIFYKIV 163 (183)
Q Consensus 125 ----------------------iP~~~~~l~~L~~L~Ls~N~l~G-----------------~iP~~l~--~l~~L~~L~ 163 (183)
||..++++++|++|+|++|+|+| .||++++ ++++|+.|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 67777777777777777777777 3777776 777777777
Q ss_pred cccCCcccccCC
Q 046467 164 LMLSAGVCFYNA 175 (183)
Q Consensus 164 L~~n~~~~~~~~ 175 (183)
|++|++.+.+|.
T Consensus 498 Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 498 LYNCPNMTQLPD 509 (876)
T ss_dssp EESCTTCCSCCG
T ss_pred CcCCCCCccChH
Confidence 777777777773
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.56 E-value=1.1e-15 Score=126.88 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=98.0
Q ss_pred CCCCCchhHHHHHHHHcCCCCCCCCCCCCC-----CCCCCCccccceeC---------CCCCEEEEEeCccCCCcccCCc
Q 046467 34 AGLLSSPIQLEREALLATGWWVNNWATTGN-----YTSDHCKWTGISCN---------SAGSVIGVSLLWYENDNIIGEL 99 (183)
Q Consensus 34 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~W-----~~~~~C~w~gv~C~---------~~~~v~~L~l~~l~~g~l~~~~ 99 (183)
..++..++.++|..+...... ....| ...++|.|.|+.|+ ...+++.|++.+.+-..+|..
T Consensus 25 ~~~~~~aLl~~k~~~~~~~~~----~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~- 99 (328)
T 4fcg_A 25 LRPYHDVLSQWQRHYNADRNR----WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQ- 99 (328)
T ss_dssp CCCHHHHHHHHHHHHHHCCTT----HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSC-
T ss_pred CchHHHHHHHHHHhccCCchh----hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChh-
Confidence 345567888888887543211 14556 25688999999995 236899999986544566665
Q ss_pred CCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCcc
Q 046467 100 GRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEE 177 (183)
Q Consensus 100 g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~ 177 (183)
+.++++|++|++++|. ++ .+|..++++++|++|++++|+++ .+|..++++++|++|+|++|+..+.+|.+.
T Consensus 100 ----l~~l~~L~~L~L~~n~-l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 100 ----AFRLSHLQHMTIDAAG-LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp ----GGGGTTCSEEEEESSC-CC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred ----hhhCCCCCEEECCCCC-cc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 5567788888888888 87 78888888888888888888888 788888888888888888888877777653
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.44 E-value=1.2e-13 Score=126.19 Aligned_cols=91 Identities=24% Similarity=0.307 Sum_probs=81.7
Q ss_pred CEEEEEeCccC-CCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 81 SVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 81 ~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
.++.|++++.. .|.+|.. ++++++|+.|++++|+ ++|.||..++++++|++|||++|+++|.||..++++++|
T Consensus 633 ~L~~LdLs~N~l~g~ip~~-----l~~l~~L~~L~Ls~N~-l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKE-----IGSMPYLFILNLGHND-ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp CCCEEECCSSCCBSCCCGG-----GGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred cccEEECcCCcccccCCHH-----HhccccCCEEeCcCCc-cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 56678887543 5667766 7788999999999999 999999999999999999999999999999999999999
Q ss_pred cEEEcccCCcccccCCcc
Q 046467 160 YKIVLMLSAGVCFYNAEE 177 (183)
Q Consensus 160 ~~L~L~~n~~~~~~~~e~ 177 (183)
++|+|++|+++|.+|.+.
T Consensus 707 ~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp SEEECCSSEEEEECCSSS
T ss_pred CEEECcCCcccccCCCch
Confidence 999999999999999764
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=1e-12 Score=100.84 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=55.7
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
+..+++|++|++++|+ +++..|..+..+++|++|+|++|++++.+|..+..+++|+.|+|++|++.|.++.
T Consensus 74 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 74 FEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp TTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred cCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 6677778888888888 8877777777788888888888888887787788888888888888888776553
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=5.5e-12 Score=99.28 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=67.6
Q ss_pred CCCCCCCCCccccceeCCC----------CCEEEEEeCccC-CCcccCCcCCcc-------------------CCCCCCC
Q 046467 61 TGNYTSDHCKWTGISCNSA----------GSVIGVSLLWYE-NDNIIGELGRFK-------------------FSCFPNL 110 (183)
Q Consensus 61 ~~W~~~~~C~w~gv~C~~~----------~~v~~L~l~~l~-~g~l~~~~g~l~-------------------~~~l~~L 110 (183)
..|.+...|.|.++.|... ..++.|++.+.. .+..+..++.++ +..+++|
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90 (229)
T ss_dssp CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence 4456788999999999742 245667766432 222222221111 4566667
Q ss_pred cEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 111 RSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 111 ~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
++|++++|+ +++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++...
T Consensus 91 ~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 91 TVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CEEECCCCc-CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence 777777777 66544445566667777777777666 5666666666777777766666643
No 9
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=5.8e-12 Score=94.99 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=77.0
Q ss_pred CccccceeCC----------CCCEEEEEeCccCCCcc-cCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCE
Q 046467 69 CKWTGISCNS----------AGSVIGVSLLWYENDNI-IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRT 137 (183)
Q Consensus 69 C~w~gv~C~~----------~~~v~~L~l~~l~~g~l-~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~ 137 (183)
|.|..+.|.. ...++.|++.+..-..+ |.. +..+++|++|++++|+ +++..|..+..+++|++
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGV-----FDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhh-----hcCcccCCEEECCCCC-cCccChhhccCCCCCCE
Confidence 4566666652 12456677764422222 222 7889999999999999 99766666799999999
Q ss_pred EEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 138 LELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 138 L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
|+|++|++++..|..+.++++|+.|+|++|++.|.++
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999997666679999999999999999998765
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.7e-11 Score=91.21 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=32.5
Q ss_pred CCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467 105 SCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 105 ~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~ 173 (183)
..+++|++|++++|. +++..+..+..+++|++|++++|++++..+..+.++++|+.|+|++|++.|.+
T Consensus 73 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 73 DKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 344455555555555 55433333445555555555555554322222344555555555555555443
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.26 E-value=3.3e-11 Score=92.82 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=39.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|++|++++|+ +++..+..+..+++|++|++++|++++..|..+.++++|+.|+|++|++.+
T Consensus 72 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 3455666666666666 664434445666666666666666665444445666666666666666654
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.22 E-value=4.8e-11 Score=95.69 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=30.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
+.++++|++|++++|. ++...+..+.++++|++|++++|++++..+..+.++++|+.|+|++|++.
T Consensus 57 ~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp SSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC
Confidence 4445555555555555 54322222344555555555555544333333344444444444444443
No 13
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=5.8e-11 Score=91.29 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=45.0
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~ 173 (183)
|..+++|++|++++|+ +++..|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++.|.+
T Consensus 74 f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 5566666677777776 66655556666677777777777776433344666677777777777776643
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.19 E-value=4.9e-11 Score=98.66 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=63.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e 176 (183)
+..+++|++|++++|+ +.+.+|..++.+++|++|++++|++.+.+|..++++++|+.|+|++|++.+.+|.+
T Consensus 225 l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp GGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred hccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 6678888999999988 88888888888999999999999999999988999999999999999988888854
No 15
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=7.8e-11 Score=89.21 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=68.5
Q ss_pred CEEEEEeCccCCCcc-cCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 81 SVIGVSLLWYENDNI-IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l-~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
.++.|++.+..-..+ |.. +..+++|++|++++|+ +++..+..+..+++|++|+|++|++++..|..+.++++|
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGV-----FDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107 (174)
T ss_dssp TCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCcEEEeCCCCccccCHHH-----hcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCC
Confidence 456677764432222 222 7889999999999999 997544557899999999999999996555559999999
Q ss_pred cEEEcccCCcccccC
Q 046467 160 YKIVLMLSAGVCFYN 174 (183)
Q Consensus 160 ~~L~L~~n~~~~~~~ 174 (183)
+.|+|++|++.|.++
T Consensus 108 ~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 108 THIYLYNNPWDCECR 122 (174)
T ss_dssp SEEECCSSCBCTTBG
T ss_pred CEEEeCCCCcccccc
Confidence 999999999997654
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.18 E-value=6.3e-11 Score=92.72 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=61.5
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
+..+++|++|++++|+ +++..|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++.|.++.
T Consensus 101 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 101 FKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp GTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred hcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 6778888999999998 8888888888899999999999999988888888899999999999998887653
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.18 E-value=1.1e-10 Score=91.41 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=58.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|. +++..|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++.+..|
T Consensus 77 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 77 FEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred hCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 6778888888888888 887666778888888888888888888888888888888899988888887655
No 18
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=8.7e-11 Score=97.10 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=70.6
Q ss_pred CccccceeCCC------------CCEEEEEeCc-cCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCC
Q 046467 69 CKWTGISCNSA------------GSVIGVSLLW-YENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTI 135 (183)
Q Consensus 69 C~w~gv~C~~~------------~~v~~L~l~~-l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L 135 (183)
|.|..+.|... ..++.|++.+ .....+++. .|..+++|+.|+|++|+ |+|..|..|.++++|
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRL 82 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSC-CCEECTTGGGSCSCC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCc-cceeCHHHhcCCcCC
Confidence 77777877643 1356666653 322333311 17788889999999998 998888888889999
Q ss_pred CEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 136 RTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 136 ~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
++|+|++|+|++ +|+.+.....|+.|+|.+|++.|-+.
T Consensus 83 ~~L~l~~N~l~~-~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 83 SRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp CEEECCSSCCSC-CCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CEEeCCCCccce-eCHHHcccCCceEEEeeCCCccCCCc
Confidence 999999999985 55444333339999999998887643
No 19
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.15 E-value=1.7e-10 Score=90.25 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=42.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~ 173 (183)
+..+++|++|++++|+ +++..+..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++....
T Consensus 76 ~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp TTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred hhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 5556666666666666 66322233456666666666666666666666666667777777666666543
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.15 E-value=6.9e-11 Score=102.92 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=34.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCccccccccEEEcccCCcccccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
+..+++|++|++++|. +++..|..++++++|++|++++|++++ .+|..++++++|++|++++|+..+.+|.
T Consensus 70 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp TTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred ccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence 3444445555555555 444333334555555555555555544 3444455555555555555544444443
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.11 E-value=1.7e-10 Score=91.56 Aligned_cols=66 Identities=18% Similarity=0.088 Sum_probs=31.3
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
+..+++|++|++++|. +++..|..+..+++|++|++++|++++..|..+..+++|++|+|++|++.
T Consensus 55 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC
Confidence 3444455555555555 55444444444455555555555544333333444444444444444444
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.10 E-value=4.3e-11 Score=98.23 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=64.4
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccc-cccEEEcccCCcccccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYY-IFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~-~L~~L~L~~n~~~~~~~~e 176 (183)
+.++++|++|++++|. ++|.+|..+..+++|++|++++|+++|.+|..+++++ +|+.|+|++|++.+.+|.+
T Consensus 121 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp GGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred HhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 6788899999999999 9999999999999999999999999999999999988 8999999999988776653
No 23
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.10 E-value=1.3e-10 Score=88.94 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=82.0
Q ss_pred CccccceeCCC----------CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEE
Q 046467 69 CKWTGISCNSA----------GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTL 138 (183)
Q Consensus 69 C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L 138 (183)
|.|..+.|... ..++.|++.+.....+++. +. +..+++|++|++++|. +++..|..+..+++|++|
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~--~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD-GL--FGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS-CS--GGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEE
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCc-cc--cccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEE
Confidence 45666666531 2567777765432333321 01 6788999999999999 999989999999999999
Q ss_pred EccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 139 ELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 139 ~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
+|++|++++..|..+.++++|++|+|++|++.+..|.
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence 9999999998888899999999999999999987664
No 24
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.09 E-value=3.5e-10 Score=88.46 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=65.0
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|. +++..|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++.|.++
T Consensus 100 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 6789999999999999 999889999999999999999999998777789999999999999999998654
No 25
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.09 E-value=3.1e-10 Score=85.28 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=78.9
Q ss_pred CccccceeCCC----------CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEE
Q 046467 69 CKWTGISCNSA----------GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTL 138 (183)
Q Consensus 69 C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L 138 (183)
|.|.++.|... ..++.|++.+.....+++.. +..+++|++|++++|+ +++..+..+..+++|++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCc-ceEeChhHccCCCccCEE
Confidence 57888888632 25677887754222333221 6788999999999999 997666668999999999
Q ss_pred EccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 139 ELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 139 ~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
++++|++++..|..+.++++|+.|+|++|++.+..+
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 117 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence 999999997766778999999999999999985433
No 26
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=3.3e-10 Score=87.01 Aligned_cols=88 Identities=16% Similarity=0.051 Sum_probs=74.8
Q ss_pred CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcccccccc
Q 046467 81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFY 160 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~ 160 (183)
.++.|++.+.....+|.. +..+++|++|++++|. +++..|..|..+++|++|+|++|++++..|..+..+++|+
T Consensus 32 ~l~~L~L~~n~i~~ip~~-----~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKE-----LSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp TCCEEECCSSCCCSCCGG-----GGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCEEECCCCcCchhHHH-----hhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence 577888875433445433 7889999999999999 9987778899999999999999999988888899999999
Q ss_pred EEEcccCCcccccC
Q 046467 161 KIVLMLSAGVCFYN 174 (183)
Q Consensus 161 ~L~L~~n~~~~~~~ 174 (183)
.|+|++|++....+
T Consensus 106 ~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 106 LLSLHGNDISVVPE 119 (193)
T ss_dssp EEECCSSCCCBCCT
T ss_pred EEECCCCCCCeeCh
Confidence 99999999985433
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.07 E-value=2.8e-10 Score=96.83 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=36.4
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC--ccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF--TVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~--l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|. +++..|..++++++|++|++++|++++.+|.. +.++++|++|+|++|++.+..|
T Consensus 75 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 146 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146 (455)
T ss_dssp TTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC
T ss_pred ccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc
Confidence 4445555555555555 55555555555555555555555555544333 4555555555555555554444
No 28
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=8.4e-10 Score=83.45 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=67.5
Q ss_pred EEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEE
Q 046467 83 IGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKI 162 (183)
Q Consensus 83 ~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 162 (183)
+.+++.+.+-+.+|.. + .++|++|++++|+ +++..|..+.++++|++|+|++|++++..|..+.++++|+.|
T Consensus 15 ~~l~~~~n~l~~iP~~-----~--~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-----I--PTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSCCSC-----C--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCCccCCC-----c--CCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 3455654433455543 2 3789999999999 999889999999999999999999997444456899999999
Q ss_pred EcccCCcccccC
Q 046467 163 VLMLSAGVCFYN 174 (183)
Q Consensus 163 ~L~~n~~~~~~~ 174 (183)
+|++|++....+
T Consensus 87 ~L~~N~l~~l~~ 98 (174)
T 2r9u_A 87 DLNDNHLKSIPR 98 (174)
T ss_dssp ECCSSCCCCCCT
T ss_pred ECCCCccceeCH
Confidence 999999986544
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.06 E-value=3.7e-10 Score=99.08 Aligned_cols=70 Identities=11% Similarity=0.157 Sum_probs=58.5
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcccc-ccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTY-YIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l-~~L~~L~L~~n~~~~~~~ 174 (183)
|..+++|++|+|++|+ +++..|..+..+++|++|||++|++++..|..+.++ ++|+.|+|++|++.|-|.
T Consensus 514 f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 6778888888888888 888777778888888888888888888888888877 578888888888888654
No 30
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=3.3e-10 Score=103.32 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=41.5
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
+..+++|++|+|++|. |+ .+|..++.+++|++|+|++|+|+ .||..++++++|++|+|++|.+. .+|.
T Consensus 243 ~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~ 310 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNS-LT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW 310 (727)
T ss_dssp GGGCCSCSCCBCTTSC-CS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS
T ss_pred hcCCCCCCEEEeeCCc-Cc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh
Confidence 3355566666666666 66 56666666666666666666666 56666666666666666666554 4444
No 31
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=1.3e-09 Score=81.89 Aligned_cols=84 Identities=12% Similarity=0.001 Sum_probs=68.6
Q ss_pred EEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEE
Q 046467 83 IGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKI 162 (183)
Q Consensus 83 ~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 162 (183)
+.+++.+.+-..+|.. -.++|++|++++|+ +++..|..+.++++|++|+|++|++++..|..+.++++|+.|
T Consensus 12 ~~l~~s~n~l~~ip~~-------~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 12 TTVDCSGKSLASVPTG-------IPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TEEECTTSCCSSCCSC-------CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCccCcc-------CCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 4577765433445533 24789999999999 999889999999999999999999997656667899999999
Q ss_pred EcccCCcccccC
Q 046467 163 VLMLSAGVCFYN 174 (183)
Q Consensus 163 ~L~~n~~~~~~~ 174 (183)
+|++|++.+..+
T Consensus 84 ~L~~N~l~~~~~ 95 (170)
T 3g39_A 84 SLNDNQLKSIPR 95 (170)
T ss_dssp ECCSSCCCCCCT
T ss_pred ECCCCccCEeCH
Confidence 999999986544
No 32
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=1.7e-10 Score=84.26 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=71.7
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCcccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYYI 158 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~ 158 (183)
..++.|++.+..-..+ .. +..+++|++|++++|. +++.+|..+..+++|++|++++|.+++ +.|..+.++++
T Consensus 42 ~~L~~L~l~~n~l~~~-~~-----~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 42 EELEFLSTINVGLTSI-AN-----LPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN 114 (149)
T ss_dssp TTCCEEECTTSCCCCC-TT-----CCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTT
T ss_pred CCCcEEECcCCCCCCc-hh-----hhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCC
Confidence 4677888874321222 12 7889999999999999 998888888889999999999999997 35588999999
Q ss_pred ccEEEcccCCcccccC
Q 046467 159 FYKIVLMLSAGVCFYN 174 (183)
Q Consensus 159 L~~L~L~~n~~~~~~~ 174 (183)
|+.|++++|++.+..+
T Consensus 115 L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 115 LKSLDLFNCEVTNLND 130 (149)
T ss_dssp CCEEECTTCGGGGSTT
T ss_pred CCEEeCcCCcccchHH
Confidence 9999999999887654
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.03 E-value=1.3e-09 Score=83.84 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=71.0
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
..++.|++.+..-..+++.. +..+++|++|++++|+ +++..+..+..+++|++|++++|++++..+..+.++++|
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGV----FDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCcCEEECCCCcCCccCHhH----hcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 35666666643222222211 6789999999999999 997666678999999999999999997666668999999
Q ss_pred cEEEcccCCcccccC
Q 046467 160 YKIVLMLSAGVCFYN 174 (183)
Q Consensus 160 ~~L~L~~n~~~~~~~ 174 (183)
+.|+|++|++.|.+|
T Consensus 151 ~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 151 QYIWLHDNPWDCTCP 165 (208)
T ss_dssp CEEECCSCCBCCCTT
T ss_pred cEEEecCCCeecCCC
Confidence 999999999988766
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.02 E-value=1.1e-09 Score=87.79 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=53.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|+ +++..|..++.+++|++|++++|++++..|..+.++++|+.|+|++|++.|.+|
T Consensus 153 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 4667778888888888 776656667778888888888888887666667788888888888888777665
No 35
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.02 E-value=1e-09 Score=86.22 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=63.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|+ ++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|+|.+|++.|.++
T Consensus 108 ~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNK-LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTCTTCCEEECCSSC-CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred hCcchhhCeEeccCCc-cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 6789999999999999 99 799999999999999999999997666779999999999999999998764
No 36
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=6.8e-10 Score=98.66 Aligned_cols=88 Identities=14% Similarity=0.036 Sum_probs=75.5
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCC-CCCcccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKL-PNFTVTYYI 158 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~i-P~~l~~l~~ 158 (183)
..++.|++.+..-..+|.. ++.+++|+.|++++|. +++ +| .++.+++|++|+|++|++++.+ |..++++++
T Consensus 463 ~~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~Ls~N~-l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 463 LLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNA-LEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp TTCCEEECCSSCCCCCCGG-----GGGCTTCCEEECCSSC-CCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred ccCcEeecCcccccccchh-----hhcCCCCCEEECCCCC-CCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence 4677888875433355544 7888999999999999 997 77 8999999999999999999887 999999999
Q ss_pred ccEEEcccCCcccccCC
Q 046467 159 FYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 159 L~~L~L~~n~~~~~~~~ 175 (183)
|+.|+|++|++.+.+|.
T Consensus 535 L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCEEECTTSGGGGSSSC
T ss_pred CCEEEecCCcCCCCccH
Confidence 99999999999988764
No 37
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.99 E-value=1.7e-09 Score=85.73 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=53.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
+..+++|++|++++|+ +++..|..+..+++|++|+|++|++++..|..+.++++|+.|+|++|++.|.
T Consensus 127 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5667788888888888 8765555677888888888888888876666777888888888888888775
No 38
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=6.5e-10 Score=91.79 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=63.1
Q ss_pred CCCCCCCcEEeccC-CCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467 104 FSCFPNLRSFKIRS-NYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 104 ~~~l~~L~~L~ls~-N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~ 173 (183)
++.+++|+.|+|++ |. +++..|..|+.+++|++|+|++|+|+|..|..++++++|+.|+|++|++.+..
T Consensus 27 l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 56778999999996 99 99877788999999999999999999988889999999999999999998643
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.99 E-value=8.4e-10 Score=91.44 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=43.8
Q ss_pred CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC-ccccccc
Q 046467 81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF-TVTYYIF 159 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L 159 (183)
.++.|++.+.+-..++.. .+.++++|++|++++|. +++..|..+.++++|++|++++|++++ +|.. +.++++|
T Consensus 53 ~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 126 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSL 126 (353)
T ss_dssp TCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTC
T ss_pred cCcEEECCCCcCcccCHH----HhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccC
Confidence 456666654322222221 04455556666666665 555555555555566666666665553 3332 5555555
Q ss_pred cEEEcccCCcc
Q 046467 160 YKIVLMLSAGV 170 (183)
Q Consensus 160 ~~L~L~~n~~~ 170 (183)
++|+|++|++.
T Consensus 127 ~~L~L~~n~l~ 137 (353)
T 2z80_A 127 TFLNLLGNPYK 137 (353)
T ss_dssp SEEECTTCCCS
T ss_pred CEEECCCCCCc
Confidence 55555555554
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.98 E-value=1.8e-09 Score=99.58 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=54.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC--ccccccccEEEcccCCcccccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF--TVTYYIFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~--l~~l~~L~~L~L~~n~~~~~~~~e 176 (183)
+.++++|++|++++|. +++..|..++++++|++|+|++|.+++.+|.. ++++++|+.|+|++|++.+..+.+
T Consensus 69 f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 142 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142 (844)
T ss_dssp TSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG
T ss_pred hcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch
Confidence 6777788888888888 87777777888888888888888887777665 777788888888887777665543
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.97 E-value=2.5e-10 Score=102.27 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=59.0
Q ss_pred CCCCCCCcEEeccCCCCcccc-----------------CCcccc--CCCCCCEEEccCCccccCCCCCccccccccEEEc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGS-----------------IPSEIT--VLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVL 164 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~-----------------iP~~~~--~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L 164 (183)
++++++|++|++++|. ++|. +|+.++ ++++|++|++++|++.|.+|..++++++|++|+|
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 6778888888888888 8886 888888 8888888888888888888888888888888888
Q ss_pred ccCC-ccc-ccCC
Q 046467 165 MLSA-GVC-FYNA 175 (183)
Q Consensus 165 ~~n~-~~~-~~~~ 175 (183)
++|+ ++| .+|.
T Consensus 281 s~n~~l~~~~lp~ 293 (636)
T 4eco_A 281 ACNRGISGEQLKD 293 (636)
T ss_dssp TTCTTSCHHHHHH
T ss_pred cCCCCCccccchH
Confidence 8887 777 5554
No 42
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.96 E-value=7.3e-10 Score=82.46 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=69.9
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccC-CCCCcccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGK-LPNFTVTYYI 158 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~ 158 (183)
..++.|++.+..-..+ .. +..+++|++|++++|. +++.+|..+..+++|++|++++|++++. .+..+..+++
T Consensus 49 ~~L~~L~l~~n~l~~~-~~-----~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 49 VNLEFLSLINVGLISV-SN-----LPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121 (168)
T ss_dssp GGCCEEEEESSCCCCC-SS-----CCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred CCCCEEeCcCCCCCCh-hh-----hccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence 3567777764321112 12 7889999999999999 9988888888899999999999999863 2378999999
Q ss_pred ccEEEcccCCcccccC
Q 046467 159 FYKIVLMLSAGVCFYN 174 (183)
Q Consensus 159 L~~L~L~~n~~~~~~~ 174 (183)
|+.|++++|++.+..+
T Consensus 122 L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 122 LKSLDLFNCEVTNLND 137 (168)
T ss_dssp CCEEECCSSGGGTSTT
T ss_pred CCEEEeeCCcCcchHH
Confidence 9999999999886654
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.95 E-value=1.9e-09 Score=91.65 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=59.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|+ +++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|++.|.+|
T Consensus 343 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 343 FENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6778888888888888 888888888888899999999998886555556888899999999999988887
No 44
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.95 E-value=3.1e-10 Score=103.46 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=64.9
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
++++++|++|+|++|. |+ .||..++.+++|++|+|++|.|+ .||.+++++++|+.|+|++|++.+.+|.
T Consensus 266 ~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNR-LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp GGGGTTCCEEECTTSC-CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred hhCCCCCCEEeCcCCc-CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 7788999999999999 99 89999999999999999999997 8999999999999999999999987664
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.94 E-value=2.1e-09 Score=94.24 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e 176 (183)
+..+++|++|++++|+ +++..|..|.++++|++|+|++|++++..|..+.++++|++|+|++|++.+..|.+
T Consensus 490 ~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 490 FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred hhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 7889999999999999 99999999999999999999999999988888999999999999999999887653
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.93 E-value=4.7e-09 Score=84.13 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=47.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|+ +++..|..+..+++|++|++++|++++..|..++.+++|+.|+|++|++.+..|
T Consensus 129 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 4566677777777777 775555556677777777777777776555556777777777777777776544
No 47
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.92 E-value=1.3e-09 Score=83.37 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=38.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
+..+++|++|++++|. +++..|..++.+++|++|++++|++.+.+| .+.++++|+.|++++|++...
T Consensus 108 l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred hcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence 4455556666666665 555555555556666666666665333444 455566666666666655543
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.91 E-value=2.9e-09 Score=92.78 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=63.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
+..+++|++|++++|. +++..|..+.++++|++|++++|++++..|..+.++++|+.|++++|++.|.+|.
T Consensus 466 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 6778899999999999 9988888899999999999999999988777888999999999999999988775
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.90 E-value=5.3e-09 Score=92.12 Aligned_cols=66 Identities=11% Similarity=0.075 Sum_probs=34.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
|.++++|++|++++|. +++..|..++++++|++|++++|.+++..|..++++++|++|+|++|.+.
T Consensus 76 ~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp TTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred hhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccc
Confidence 4444555555555555 55444555555555555555555555444444555555555555555554
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.90 E-value=1.9e-09 Score=86.57 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
+..+++|++|++++|. +++..|..+.++++|++|++++|++++..|..+..+++|+.|+|++|++.|.++.
T Consensus 173 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred hcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 5567777777777777 7777777777777888888888888765445577778888888888887776553
No 51
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.90 E-value=2.8e-09 Score=81.56 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=70.4
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
..++.|++.+. ....++. +..+++|++|++++|. +++..|..++.+++|++|++++|.+++..|..++++++|
T Consensus 66 ~~L~~L~l~~n-~~~~~~~-----l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 66 HNIKDLTINNI-HATNYNP-----ISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp TTCSEEEEESC-CCSCCGG-----GTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred CCCCEEEccCC-CCCcchh-----hhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 36677777644 2111112 7788999999999999 999889999999999999999999999889999999999
Q ss_pred cEEEcccCCcccc
Q 046467 160 YKIVLMLSAGVCF 172 (183)
Q Consensus 160 ~~L~L~~n~~~~~ 172 (183)
+.|+|++|+....
T Consensus 139 ~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 139 NSIDLSYNGAITD 151 (197)
T ss_dssp CEEECCSCTBCCC
T ss_pred CEEEccCCCCccc
Confidence 9999999983333
No 52
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=2.5e-09 Score=79.50 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=51.0
Q ss_pred CCCCCCCcEEeccCCCCcccc-CCccccCCCCCCEEEccCCccccCCC---CCccccccccEEEcccCCcccccCCc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGS-IPSEITVLSTIRTLELTSNNLTGKLP---NFTVTYYIFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~-iP~~~~~l~~L~~L~Ls~N~l~G~iP---~~l~~l~~L~~L~L~~n~~~~~~~~e 176 (183)
+..+++|++|++++|. +++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++.|...-....|
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 4457788888888888 7753 22677788888888888888875443 36777888888888887765544443
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.88 E-value=2.2e-09 Score=95.30 Aligned_cols=70 Identities=10% Similarity=0.036 Sum_probs=48.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|. +++..|..++.+++|++|+|++|.+++..|..++++++|++|+|++|++.+..|
T Consensus 95 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred hcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 5667777777777777 777666667777777777777777774333335777777777777777766544
No 54
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.88 E-value=2.1e-09 Score=90.03 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=48.7
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC-ccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF-TVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|. +++..|..++++++|++|++++|.++ .+|.. +.++++|++|+|++|++.+..|
T Consensus 89 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred ccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 5667777777777777 77666666777777777777777777 45554 4677777777777777765443
No 55
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.87 E-value=6.4e-09 Score=86.80 Aligned_cols=67 Identities=22% Similarity=0.115 Sum_probs=50.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|++|++++|+ +++..+..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++..
T Consensus 84 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred ccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 5667777777777777 776555667777777888888887777667777777888888888777765
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.87 E-value=5.9e-09 Score=84.46 Aligned_cols=70 Identities=11% Similarity=0.151 Sum_probs=51.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccc-cccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYY-IFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~-~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|+.|++++|. +++..+..+..+++|++|++++|++++.+|..+..++ +|+.|+|++|++.|.++
T Consensus 195 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred hcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 5566777777777777 7765555677777777777777777777777777774 77777777777776544
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.86 E-value=1.1e-08 Score=81.72 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=54.7
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|+.|++++|. +++..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|++.|.++
T Consensus 153 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 5677888888888888 886555567888888888888888886545557788888888888888887654
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.86 E-value=1.3e-09 Score=89.20 Aligned_cols=87 Identities=10% Similarity=0.023 Sum_probs=52.8
Q ss_pred CEEEEEeCccC-CCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCC-----CCCCEEEccCCccccCCCCCcc
Q 046467 81 SVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVL-----STIRTLELTSNNLTGKLPNFTV 154 (183)
Q Consensus 81 ~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l-----~~L~~L~Ls~N~l~G~iP~~l~ 154 (183)
.++.|++.+.. .+.+|..+. +..+++|++|++++|+ +++. |..++.+ ++|++|++++|++++..|..++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLL---EATGPDLNILNLRNVS-WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSS---SCCSCCCSEEEEESCB-CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CccEEEccCCcccchhHHHHH---HhcCCCccEEEccCCC-Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 45566665332 233443310 1566677777777777 7665 6655555 6677777777777666666677
Q ss_pred ccccccEEEcccCCcccc
Q 046467 155 TYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 155 ~l~~L~~L~L~~n~~~~~ 172 (183)
++++|+.|+|++|++.+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCSSCCEEECCSCTTCHH
T ss_pred cCCCCCEEECCCCCcCcc
Confidence 777777777777765543
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.85 E-value=1.5e-08 Score=82.29 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=32.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
+..+++|++|++++|+ +++..|..+..+++|++|++++|++++..|..+..+++|+.|+|++|++.
T Consensus 96 ~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred hccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 3344455555555555 55433344555555555555555555433333444555555555555444
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.85 E-value=1.6e-08 Score=81.22 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=41.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|++|++++|..++...|..+..+++|++|++++|.+++..|..+.++++|++|+|++|++..
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence 55566666666666641333335556666666666666666666556666666666666666666654
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.84 E-value=1e-08 Score=81.95 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=50.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|++|++++|. +++..|..+.++++|++|++++|++++..+..++++++|++|++++|++..
T Consensus 72 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 72 YQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred ccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 5667777777777777 777666777777778888888877776666567777888888888777765
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.83 E-value=1.2e-08 Score=87.40 Aligned_cols=85 Identities=16% Similarity=0.063 Sum_probs=56.9
Q ss_pred CEEEEEeCccCCCcc-cCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 81 SVIGVSLLWYENDNI-IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l-~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
.++.|++.+.+-..+ +.. +.++++|++|++++|. +++..|..+.++++|++|+|++|++++..+..+..+++|
T Consensus 76 ~l~~L~L~~n~i~~~~~~~-----~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADT-----FRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TCSEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CccEEECcCCcCceECHHH-----cCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 567777764422222 222 6677777777777777 777666777777777777777777775555557777777
Q ss_pred cEEEcccCCccc
Q 046467 160 YKIVLMLSAGVC 171 (183)
Q Consensus 160 ~~L~L~~n~~~~ 171 (183)
+.|+|++|++..
T Consensus 150 ~~L~L~~N~l~~ 161 (452)
T 3zyi_A 150 RELWLRNNPIES 161 (452)
T ss_dssp CEEECCSCCCCE
T ss_pred CEEECCCCCcce
Confidence 777777777663
No 63
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.83 E-value=5.2e-09 Score=92.96 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=71.3
Q ss_pred CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcccccccc
Q 046467 81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFY 160 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~ 160 (183)
.++.|++.+..-..+| . ++.+++|+.|++++|. ++ .+|..++++++|++|+|++|++++ +| .++++++|+
T Consensus 442 ~L~~L~Ls~n~l~~lp-~-----~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-H-----LEQLLLVTHLDLSHNR-LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSSCC-C-----GGGGTTCCEEECCSSC-CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred CceEEEecCCCCCCCc-C-----ccccccCcEeecCccc-cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence 3556777644222233 1 6778899999999999 99 899999999999999999999997 88 899999999
Q ss_pred EEEcccCCccccc-CC
Q 046467 161 KIVLMLSAGVCFY-NA 175 (183)
Q Consensus 161 ~L~L~~n~~~~~~-~~ 175 (183)
.|+|++|++.+.. |.
T Consensus 512 ~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp EEECCSSCCCSSSTTG
T ss_pred EEECCCCCCCCCCCcH
Confidence 9999999999876 54
No 64
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.83 E-value=8.7e-09 Score=90.76 Aligned_cols=85 Identities=14% Similarity=0.019 Sum_probs=49.2
Q ss_pred CEEEEEeCccCCCcc-cCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 81 SVIGVSLLWYENDNI-IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l-~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
.++.|++.+..-..+ |.. +.++++|++|++++|. +++..|..|+++++|++|++++|++++..|..++++++|
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~-----~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTT-----FSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TCCEEECTTCCCSEECTTT-----STTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred cCcEEEccCCccCcCChhH-----hccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 456666664322222 222 5556666666666666 666556666666666666666666666556666666666
Q ss_pred cEEEcccCCccc
Q 046467 160 YKIVLMLSAGVC 171 (183)
Q Consensus 160 ~~L~L~~n~~~~ 171 (183)
++|+|++|.+.+
T Consensus 108 ~~L~L~~n~i~~ 119 (606)
T 3t6q_A 108 KHLFFIQTGISS 119 (606)
T ss_dssp CEEECTTSCCSC
T ss_pred cEeeccccCccc
Confidence 666666665554
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.82 E-value=1.1e-08 Score=82.87 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=57.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
+..+++|++|++++|. +++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|++.+..|.
T Consensus 171 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred HhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 6677888888888888 8887788888888888888888888876666778888888888888888876554
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=9.6e-09 Score=95.61 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=70.6
Q ss_pred CEEEEEeCccCCCcccCCcCCccCC--CCCCCcEEeccCCCCccccCCccccCCCCCCEEEccC------CccccCCCCC
Q 046467 81 SVIGVSLLWYENDNIIGELGRFKFS--CFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTS------NNLTGKLPNF 152 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l~~~~g~l~~~--~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~------N~l~G~iP~~ 152 (183)
.++.|++.+..-..+|.. +. .+++|+.|++++|+ +++ +|..++.+++|+.|+|++ |++.+.+|..
T Consensus 729 ~L~~L~Ls~N~L~~lp~~-----l~~~~l~~L~~L~Ls~N~-L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDD-----FRATTLPYLSNMDVSYNC-FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp GCCEEECCSSCCCCCCGG-----GSTTTCTTCCEEECCSSC-CSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred CccEEECCCCCCccchHH-----hhhccCCCcCEEEeCCCC-CCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 455666653322233333 44 78899999999999 997 898899999999999976 8889999999
Q ss_pred ccccccccEEEcccCCcccccCCccc
Q 046467 153 TVTYYIFYKIVLMLSAGVCFYNAEEV 178 (183)
Q Consensus 153 l~~l~~L~~L~L~~n~~~~~~~~e~~ 178 (183)
+.++++|+.|+|++|++ +.+|.+..
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred HhcCCCCCEEECCCCCC-CccCHhhc
Confidence 99999999999999999 78887643
No 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.82 E-value=1e-08 Score=85.52 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=40.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCc----cccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFT----VTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l----~~l~~L~~L~L~~n~~~ 170 (183)
+..+++|++|+|++|+ +++..|..+..+++|++|+|++|++++ +|..+ .++++|+.|+|++|++.
T Consensus 108 ~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 108 FSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred hCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 4556666666666666 666556666666666666666666663 45443 45666666666666665
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.81 E-value=1.9e-08 Score=82.52 Aligned_cols=93 Identities=13% Similarity=0.192 Sum_probs=61.3
Q ss_pred CccccceeCCC----------CCEEEEEeCccCCCcccC-CcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCE
Q 046467 69 CKWTGISCNSA----------GSVIGVSLLWYENDNIIG-ELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRT 137 (183)
Q Consensus 69 C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~-~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~ 137 (183)
|.|..+.|... ..++.|++.+..-..+++ . +.++++|++|++++|. +++..|..++++++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDD-----FKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCE
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhH-----hhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCE
Confidence 57887777532 256777776442222221 2 6777888888888888 88777777888888888
Q ss_pred EEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 138 LELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 138 L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
|++++|+++ .+|..+. ++|++|++++|++.
T Consensus 107 L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 107 LYISKNHLV-EIPPNLP--SSLVELRIHDNRIR 136 (332)
T ss_dssp EECCSSCCC-SCCSSCC--TTCCEEECCSSCCC
T ss_pred EECCCCcCC-ccCcccc--ccCCEEECCCCccC
Confidence 888888776 5665544 45555555555554
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.80 E-value=1.3e-08 Score=86.89 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=50.7
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~ 173 (183)
+..+++|+.|++++|+ +++..|..+.++++|++|+|++|++++..+..+..+++|+.|+|++|++.|.+
T Consensus 227 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred hccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 5666777777777777 77666667777777778888888777655556677788888888888877654
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.80 E-value=1.2e-08 Score=87.36 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=47.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|+.|++++|+ +++..|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++.|.+.
T Consensus 238 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp GTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 5566666666666666 666666666677777777777777775555556667777777777777766543
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.79 E-value=2.3e-08 Score=85.75 Aligned_cols=66 Identities=26% Similarity=0.294 Sum_probs=32.3
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
|.++++|++|++++|. +++..|..+.++++|++|+|++|++++..+..+.++++|+.|+|++|++.
T Consensus 52 ~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 52 FASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred ccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence 4445555555555555 55444555555555555555555554322233444555555555554444
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.79 E-value=9.4e-09 Score=89.02 Aligned_cols=89 Identities=9% Similarity=0.075 Sum_probs=51.4
Q ss_pred CCEEEEEeCccC-CCcccCCcCCccCCCCCCCcEEeccCCCCccc--cCCccccCCCCCCEEEccCCccccCCCCC-ccc
Q 046467 80 GSVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSG--SIPSEITVLSTIRTLELTSNNLTGKLPNF-TVT 155 (183)
Q Consensus 80 ~~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G--~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~ 155 (183)
..++.|++.+.. .+.+|.. +..+++|++|++++|+ +++ .+|..++.+++|++|++++|++++.+|.. +..
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFEN-----CGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTT-----CCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred CcccEEEeECCccChhhhhh-----hccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 345566665332 2223333 5556666666666666 665 45556666666666666666666656653 555
Q ss_pred cccccEEEcccCCcccccC
Q 046467 156 YYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 156 l~~L~~L~L~~n~~~~~~~ 174 (183)
+++|+.|+|++|++.+..|
T Consensus 398 l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp CTTCCEEECCSSCCCGGGG
T ss_pred CccCCEEECcCCCCCcchh
Confidence 6666666666666654443
No 73
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.78 E-value=2e-08 Score=88.39 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=70.8
Q ss_pred CCEEEEEeCccC-CCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCccccc
Q 046467 80 GSVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYY 157 (183)
Q Consensus 80 ~~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~ 157 (183)
..++.|++.+.. .+..|.. ++++++|++|++++|. +++..|..++++++|++|++++|.+++ .+|..+++++
T Consensus 80 ~~L~~L~Ls~n~l~~~~p~~-----~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 153 (606)
T 3vq2_A 80 HHLSNLILTGNPIQSFSPGS-----FSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153 (606)
T ss_dssp TTCCEEECTTCCCCCCCTTS-----STTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred hhcCEeECCCCcccccChhh-----cCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence 355666665432 1222323 7888999999999999 987777889999999999999999986 7899999999
Q ss_pred cccEEEcccCCcccccCC
Q 046467 158 IFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 158 ~L~~L~L~~n~~~~~~~~ 175 (183)
+|+.|+|++|++.+..|.
T Consensus 154 ~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 154 NLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp TCCEEECCSSCCCEECTT
T ss_pred CCCEEEccCCcceecChh
Confidence 999999999998876543
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.77 E-value=2.9e-08 Score=80.61 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=48.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~ 173 (183)
+..+++|+.|++++|+ +++..+..+..+++|++|+|++|+++ .+|..+..+++|+.++|++|++.|.+
T Consensus 144 ~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 4566777777777777 77433334566777777777777777 67777777777788888888877654
No 75
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.76 E-value=7e-09 Score=75.55 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=71.5
Q ss_pred CCEEEEEeCccC-C-CcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccc
Q 046467 80 GSVIGVSLLWYE-N-DNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYY 157 (183)
Q Consensus 80 ~~v~~L~l~~l~-~-g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~ 157 (183)
..++.|++.+.. . +.+|.. +..+++|++|++++|. +++. ..++.+++|++|++++|.+++.+|..+.+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-----TDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-----CTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHH-----HhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 456777777543 2 355544 6788999999999999 9976 7789999999999999999998998888899
Q ss_pred cccEEEcccCCcccc
Q 046467 158 IFYKIVLMLSAGVCF 172 (183)
Q Consensus 158 ~L~~L~L~~n~~~~~ 172 (183)
+|+.|++++|++.+.
T Consensus 89 ~L~~L~ls~N~i~~~ 103 (149)
T 2je0_A 89 NLTHLNLSGNKIKDL 103 (149)
T ss_dssp TCCEEECTTSCCCSH
T ss_pred CCCEEECCCCcCCCh
Confidence 999999999998763
No 76
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.75 E-value=1.3e-08 Score=76.40 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=62.7
Q ss_pred CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCcc-ccCCCCCCEEEccCCccccCCCC--Cccccc
Q 046467 81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSE-ITVLSTIRTLELTSNNLTGKLPN--FTVTYY 157 (183)
Q Consensus 81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~-~~~l~~L~~L~Ls~N~l~G~iP~--~l~~l~ 157 (183)
.++.|++.+..-..+ .. +..+++|++|++++|. +++ +|+. +..+++|++|++++|+++ .+|. .+..++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~-----l~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~ 113 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DG-----FPLLRRLKTLLVNNNR-ICR-IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLK 113 (176)
T ss_dssp CCSEEECCSSCCCEE-CC-----CCCCSSCCEEECCSSC-CCE-ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCT
T ss_pred CCCEEECCCCCCCcc-cc-----cccCCCCCEEECCCCc-ccc-cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCC
Confidence 567777764322222 12 7788899999999999 886 4544 488999999999999995 6776 788899
Q ss_pred cccEEEcccCCcccc
Q 046467 158 IFYKIVLMLSAGVCF 172 (183)
Q Consensus 158 ~L~~L~L~~n~~~~~ 172 (183)
+|+.|++++|++...
T Consensus 114 ~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 114 SLTYLCILRNPVTNK 128 (176)
T ss_dssp TCCEEECCSSGGGGS
T ss_pred CCCEEEecCCCCCCc
Confidence 999999999988643
No 77
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.75 E-value=8.3e-09 Score=90.86 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=52.1
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|+.|++++|+ +++..|..+.+++.| +|++++|++++.+|..+..+++|+.|++++|++.|.++
T Consensus 496 ~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 5667777777777777 777777777777777 77777777777666667777788888888888877655
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.75 E-value=4.1e-08 Score=80.36 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=58.9
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|++|++++|. +++..+..+..+++|++|++++|+++ .+|..+..+++|+.|+|++|++.+
T Consensus 212 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp GTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred hcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 7788899999999999 99877778889999999999999998 889889999999999999998874
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.75 E-value=1.6e-08 Score=87.96 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=61.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|+ ++ .||. ...+++|++|++++|++++.+|..+.++++|+.|+|++|++.|.+|
T Consensus 447 ~~~l~~L~~L~Ls~N~-l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 447 SLFLPRLQELYISRNK-LK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCCTTCCEEECCSSC-CS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cccCChhcEEECCCCc-cC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 3478899999999999 98 7887 5779999999999999999888889999999999999999999876
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.75 E-value=2e-08 Score=88.13 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=73.7
Q ss_pred ccceeCCCCCEEEEEeCccCCCccc-CCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC
Q 046467 72 TGISCNSAGSVIGVSLLWYENDNII-GELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150 (183)
Q Consensus 72 ~gv~C~~~~~v~~L~l~~l~~g~l~-~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP 150 (183)
.++..+-...++.|++.+..-..++ .. +.++++|++|++++|+ +++..|..+.++++|++|++++|+++ .+|
T Consensus 44 ~~ip~~~~~~L~~L~Ls~N~i~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 116 (562)
T 3a79_B 44 THVPKDLPPRTKALSLSQNSISELRMPD-----ISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS 116 (562)
T ss_dssp CSCCTTSCTTCCEEECCSSCCCCCCGGG-----TTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred ccCCCCCCCCcCEEECCCCCccccChhh-----hccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence 3343333367888888754322222 22 7889999999999999 99988999999999999999999999 789
Q ss_pred CCccccccccEEEcccCCcccc
Q 046467 151 NFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
.. .+++|++|+|++|++...
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l 136 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVL 136 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBC
T ss_pred cc--ccccCCEEECCCCCcccc
Confidence 87 899999999999998863
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.75 E-value=1.6e-08 Score=88.00 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=35.5
Q ss_pred CCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 106 CFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
.+++|+.|++++|. +++. | .+..+++|++|+|++|.+++ +|+.+..+++|+.|+|++|++.+
T Consensus 167 ~l~~L~~L~Ls~N~-l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 167 SSDTLEHLNLQYNF-IYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp GTTTCCEEECTTSC-CCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred hCCcccEEecCCCc-cccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc
Confidence 34444555555554 4443 1 12235666666666666665 44446677777777777777665
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.74 E-value=3.7e-08 Score=86.42 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=68.9
Q ss_pred CCEEEEEeCccCCCcc-cCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCccccc
Q 046467 80 GSVIGVSLLWYENDNI-IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYY 157 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l-~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~ 157 (183)
..++.|++.+..-..+ |.. +..+++|++|++++|+ ++ .+|.. .+++|++|++++|++++ ++|..+++++
T Consensus 76 ~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~-l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLDFHV-----FLFNQDLEYLDVSHNR-LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp TTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECTTSC-CC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred CCccEEECCCCCCCcCCHHH-----hCCCCCCCEEECCCCc-CC-ccCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence 4678888875432222 222 7889999999999999 99 68887 89999999999999997 6788999999
Q ss_pred cccEEEcccCCccc
Q 046467 158 IFYKIVLMLSAGVC 171 (183)
Q Consensus 158 ~L~~L~L~~n~~~~ 171 (183)
+|++|+|++|++..
T Consensus 147 ~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 147 KLTFLGLSAAKFRQ 160 (562)
T ss_dssp TCCEEEEECSBCCT
T ss_pred cccEEecCCCcccc
Confidence 99999999999874
No 83
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.74 E-value=2e-08 Score=86.09 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=57.7
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|+.|++++|+ +++..|..+..+++|++|+|++|++++..+..+.++++|+.|+|++|++.|.++
T Consensus 268 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred ccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 6677888888888888 888888888888889999999988887555567888889999999998887543
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.74 E-value=8.5e-09 Score=89.30 Aligned_cols=86 Identities=14% Similarity=0.049 Sum_probs=71.4
Q ss_pred CCEEEEEeCccCCCccc-CCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcccccc
Q 046467 80 GSVIGVSLLWYENDNII-GELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYI 158 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~-~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~ 158 (183)
..++.|++.+..-..++ .. +..+++|++|++++|+ +++..|..++++++|++|++++|+++ .+|.. .+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~-----~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD-----ILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVN 91 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH-----HTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCC
T ss_pred ccccEEECCCCcccccChhh-----ccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCC
Confidence 57888888754222222 22 7889999999999999 99988999999999999999999999 68887 8999
Q ss_pred ccEEEcccCCccc-ccC
Q 046467 159 FYKIVLMLSAGVC-FYN 174 (183)
Q Consensus 159 L~~L~L~~n~~~~-~~~ 174 (183)
|++|+|++|++.+ .+|
T Consensus 92 L~~L~L~~N~l~~~~~p 108 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPIC 108 (520)
T ss_dssp CSEEECCSSCCSSCCCC
T ss_pred ccEEeccCCccccccch
Confidence 9999999999987 344
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.74 E-value=1.7e-08 Score=87.95 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=56.3
Q ss_pred CCCCCCCcEEeccCCCCcc-ccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLS-GSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~-G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|. ++ +.+|..+..+++|++|++++|++++..|..+.++++|+.|+|++|++.+..|
T Consensus 441 ~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 5667788888888888 76 6788888888888888888888888778888888888888888888876644
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.74 E-value=1.2e-08 Score=90.84 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=54.1
Q ss_pred CCCCCC-----ccccc-eeCCCCCEEEEEeCccCCCcccCCc--------------CCccCCCCCCCcEEeccCCCCccc
Q 046467 64 YTSDHC-----KWTGI-SCNSAGSVIGVSLLWYENDNIIGEL--------------GRFKFSCFPNLRSFKIRSNYLLSG 123 (183)
Q Consensus 64 ~~~~~C-----~w~gv-~C~~~~~v~~L~l~~l~~g~l~~~~--------------g~l~~~~l~~L~~L~ls~N~~l~G 123 (183)
...++| .|.++ .|.. .+++.|++.+.+-..+|..+ ..+| ..+++|++|++++|+ +++
T Consensus 38 ~~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~-l~~ 114 (571)
T 3cvr_A 38 KQALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNR-LST 114 (571)
T ss_dssp TTCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSC-CSC
T ss_pred ccCCccccccchhhhcccccc-CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCC-CCC
Confidence 345677 68888 6753 57888888754333355432 1122 234555555555555 554
Q ss_pred cCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 124 SIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 124 ~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+|. +.+ +|++|++++|++++ ||. .+++|+.|+|++|++.+
T Consensus 115 -ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 115 -LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp -CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred -cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence 555 433 55556666555554 554 45556666666665554
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.73 E-value=3e-08 Score=77.71 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=31.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccC-CccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTS-NNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|++|++++|+.+++..+..+.++++|++|++++ |++++..|..+.++++|+.|++++|++.+
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence 444455555555555203322222444555555555554 55553333444455555555555554444
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.72 E-value=5e-08 Score=79.87 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=70.6
Q ss_pred CCccccceeCCC----------CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCE
Q 046467 68 HCKWTGISCNSA----------GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRT 137 (183)
Q Consensus 68 ~C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~ 137 (183)
.|.|..+.|... ..++.|++.+..-..+++. .+.++++|++|++++|. +++..|..++++++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNK-ISKISPGAFAPLVKLER 104 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCE
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCE
Confidence 457777777531 2456677664322222211 16788889999999998 88877888889999999
Q ss_pred EEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 138 LELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 138 L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
|++++|+++ .+|..+. ++|+.|++++|++.+.
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~ 136 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKV 136 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBB
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCccccc
Confidence 999999888 6887665 7899999988887754
No 89
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.70 E-value=4.7e-08 Score=86.69 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=34.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
++.+++|++|++++|. +++..+..++++++|++|+|++|.+++..|..++++++|+.|+|++|++.+
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 3455555555555555 553222223555555555555555555555555555555555555555543
No 90
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.70 E-value=5.3e-08 Score=83.00 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=60.0
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
+..+++|+.|++++|. +++..|..+.++++|++|++++|++++..|..+.++++|+.|+|++|++...
T Consensus 203 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred cCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 5677888899999998 9988888899999999999999999988888899999999999999988854
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.70 E-value=3.7e-08 Score=87.94 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=42.5
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
+.++++|++|++++|. +++..|..++++++|++|++++|.+++..|..++++++|+.|+++.|++.+.
T Consensus 93 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp TTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred hccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 4556666666666666 6654445566666666666666666666666666666666666666665544
No 92
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.70 E-value=3.9e-08 Score=73.77 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=64.9
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCC-CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCc-cccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCF-PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFT-VTYY 157 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l-~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l-~~l~ 157 (183)
..++.|++.+..-..++ . +..+ ++|++|++++|. +++. +.+..+++|++|++++|.+++ +|+.+ ..++
T Consensus 19 ~~L~~L~l~~n~l~~i~-~-----~~~~~~~L~~L~Ls~N~-l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 88 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIE-N-----LGATLDQFDAIDFSDNE-IRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALP 88 (176)
T ss_dssp TSCEEEECTTSCCCSCC-C-----GGGGTTCCSEEECCSSC-CCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCT
T ss_pred CCceEEEeeCCCCchhH-H-----hhhcCCCCCEEECCCCC-CCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCC
Confidence 46778888754222332 2 3344 499999999999 9975 678999999999999999996 56555 8999
Q ss_pred cccEEEcccCCcccc
Q 046467 158 IFYKIVLMLSAGVCF 172 (183)
Q Consensus 158 ~L~~L~L~~n~~~~~ 172 (183)
+|+.|+|++|++...
T Consensus 89 ~L~~L~L~~N~i~~~ 103 (176)
T 1a9n_A 89 DLTELILTNNSLVEL 103 (176)
T ss_dssp TCCEEECCSCCCCCG
T ss_pred CCCEEECCCCcCCcc
Confidence 999999999998543
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.70 E-value=5.4e-08 Score=77.71 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=59.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCccccccccEEEcccCCccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~L~~n~~~~~~ 173 (183)
+..+++|++|++++|+ +++..+..++.+++|++|++++|++++ .+|..++++++|+.|+|++|++.+..
T Consensus 96 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 6788899999999999 887666678899999999999999987 57888999999999999999887643
No 94
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.68 E-value=7.8e-08 Score=80.46 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=41.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCcc-ccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSE-ITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~-~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|++|++++|. ++ .+|.. +.++++|++|++++|++++..|..+.++++|+.|++++|++..
T Consensus 113 ~~~l~~L~~L~L~~n~-l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 113 FQNVPLLTVLVLERND-LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred hcCCCCCCEEECCCCc-cC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 4556666666666666 66 34443 4666666666666666666555566666666666666666654
No 95
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.65 E-value=7.1e-08 Score=86.12 Aligned_cols=70 Identities=19% Similarity=0.104 Sum_probs=38.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcc--ccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTV--TYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~--~l~~L~~L~L~~n~~~~~~~ 174 (183)
++++++|++|++++|. +++..|..++++++|++|++++|++++..|..+. .+++|+.|+++.|++.+..|
T Consensus 117 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred ccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 4455556666666665 5555555555566666666666665554444332 33556666666555554433
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.65 E-value=1.7e-08 Score=87.73 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=44.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCcccc-CCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEIT-VLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~ 173 (183)
++.+++|++|++++|. +++.+|..+. .+++|++|+|++|.+++. |. +..+++|+.|+|++|++.+..
T Consensus 140 ~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp GGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC
T ss_pred hcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCC
Confidence 5556677777777777 7776666664 567777777777777654 22 335777777777777776543
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.64 E-value=3.8e-08 Score=80.14 Aligned_cols=83 Identities=8% Similarity=0.009 Sum_probs=46.6
Q ss_pred EEEEEeCccC-CCcccCCcCCccC--CCCCCCcEEeccCCCCccccCC----ccccCCCCCCEEEccCCccccCCCCCcc
Q 046467 82 VIGVSLLWYE-NDNIIGELGRFKF--SCFPNLRSFKIRSNYLLSGSIP----SEITVLSTIRTLELTSNNLTGKLPNFTV 154 (183)
Q Consensus 82 v~~L~l~~l~-~g~l~~~~g~l~~--~~l~~L~~L~ls~N~~l~G~iP----~~~~~l~~L~~L~Ls~N~l~G~iP~~l~ 154 (183)
++.|++.+.+ .+..|.. + ..+++|++|++++|. +++.+| ..+..+++|++|++++|.+++..|..++
T Consensus 93 L~~L~l~~n~l~~~~~~~-----~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPL-----PLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCEEEEESCCCBSCCCCC-----SSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred eeEEEeeCCEeccchhhh-----hhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 5666665432 2333322 2 555666666666666 665444 2234566666666666666655555666
Q ss_pred ccccccEEEcccCCcc
Q 046467 155 TYYIFYKIVLMLSAGV 170 (183)
Q Consensus 155 ~l~~L~~L~L~~n~~~ 170 (183)
++++|++|+|++|++.
T Consensus 167 ~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 167 AFPALTSLDLSDNPGL 182 (310)
T ss_dssp CCTTCCEEECCSCTTC
T ss_pred cCCCCCEEECCCCCCc
Confidence 6666666666666654
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.63 E-value=6.8e-08 Score=89.00 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=83.8
Q ss_pred CccccceeCCCCCEEEEEeCccCCCc-ccCCcCCccCCCCCCCcEEeccCCCCccccC-CccccCCCCCCEEEccCCccc
Q 046467 69 CKWTGISCNSAGSVIGVSLLWYENDN-IIGELGRFKFSCFPNLRSFKIRSNYLLSGSI-PSEITVLSTIRTLELTSNNLT 146 (183)
Q Consensus 69 C~w~gv~C~~~~~v~~L~l~~l~~g~-l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~i-P~~~~~l~~L~~L~Ls~N~l~ 146 (183)
|.|..|.+ -...++.|++++..-.. .+.. +.++++|++|++++|. +.+.+ |..+.++++|++|+|++|+++
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~-----~~~l~~L~~LdLs~n~-~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASS-----FPFLEQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSS-----CSSCCSCSEEEECTTC-CCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhH-----CcccccCeEEeCCCCC-CccccCHHHhcCCCCCCEEECCCCcCc
Confidence 45677776 55788999998542222 2223 8899999999999998 88888 678999999999999999999
Q ss_pred cCCCCCccccccccEEEcccCCcccccCCc
Q 046467 147 GKLPNFTVTYYIFYKIVLMLSAGVCFYNAE 176 (183)
Q Consensus 147 G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e 176 (183)
+..|..++++++|++|+|++|++.+.+|.+
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccC
Confidence 999999999999999999999999876654
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.60 E-value=4.2e-08 Score=79.93 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=40.4
Q ss_pred CCCCCcEEeccCCCCccccCCccccCC---CCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 106 CFPNLRSFKIRSNYLLSGSIPSEITVL---STIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~iP~~~~~l---~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
.+++|++|++++|+ +++.+|+.+..+ ++|++|++++|+++ .+|..+. ++|+.|+|++|++.+.
T Consensus 222 ~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 222 AGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp HTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred cCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence 44666666666666 666666666555 46666666666666 5666554 5666677766666653
No 100
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.60 E-value=1.5e-07 Score=77.22 Aligned_cols=87 Identities=13% Similarity=0.022 Sum_probs=70.6
Q ss_pred EEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccE
Q 046467 82 VIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYK 161 (183)
Q Consensus 82 v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 161 (183)
++.+++.+.+-..+|.. -.++|++|++++|. +++..|..+.++++|++|++++|++++..|..++++++|++
T Consensus 35 l~~l~~~~~~l~~ip~~-------~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKE-------ISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp TTEEECCSSCCSSCCSC-------CCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred CCEEECCCCCccccCCC-------CCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 34566654423345533 23689999999999 99877889999999999999999999988999999999999
Q ss_pred EEcccCCcccccCCcc
Q 046467 162 IVLMLSAGVCFYNAEE 177 (183)
Q Consensus 162 L~L~~n~~~~~~~~e~ 177 (183)
|+|++|++. .+|.+.
T Consensus 107 L~L~~n~l~-~l~~~~ 121 (332)
T 2ft3_A 107 LYISKNHLV-EIPPNL 121 (332)
T ss_dssp EECCSSCCC-SCCSSC
T ss_pred EECCCCcCC-ccCccc
Confidence 999999987 555543
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.59 E-value=5.5e-08 Score=79.85 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=59.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCccccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVR 182 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~~~~~~ 182 (183)
+..+++|++|++++|. +++. +.+..+++|++|++++|.+++..|..+.++++|+.|+|++|++.+..|.+....++
T Consensus 261 ~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQ-ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCS
T ss_pred HhcCCCcCEEEccCCc-cCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccc
Confidence 5677788888888888 7763 45778888888888888888888888888888888888888888877755555544
No 102
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.58 E-value=3.3e-08 Score=80.71 Aligned_cols=68 Identities=9% Similarity=0.169 Sum_probs=61.9
Q ss_pred CCCCCcEEeccCCCCccccCCccc--cCCCCCCEEEccCCccccCCCCCcccc-----ccccEEEcccCCcccccCC
Q 046467 106 CFPNLRSFKIRSNYLLSGSIPSEI--TVLSTIRTLELTSNNLTGKLPNFTVTY-----YIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~iP~~~--~~l~~L~~L~Ls~N~l~G~iP~~l~~l-----~~L~~L~L~~n~~~~~~~~ 175 (183)
++++|++|++++|+ ++|.+|..+ ..+++|++|++++|++++. |..++.+ ++|++|+|++|++.+..|.
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 68999999999999 999999987 8999999999999999987 8888887 9999999999999876543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.55 E-value=2.1e-07 Score=75.41 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=27.7
Q ss_pred CCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 106 CFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
.+++|+.|++++|. +++. +.+..+++|++|++++|++++..| +..+++|+.|+|++|++..
T Consensus 132 ~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 132 HLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp GCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 33444444444444 4432 334444444555555554443222 4445555555555554443
No 104
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.54 E-value=1.4e-07 Score=77.92 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=48.1
Q ss_pred CCEEEEEeCccCCCccc-CCcCCccCCCCCCCcEEeccCCCCccccCCcc-ccCCCCCCEEEccCCccccCCCC--Cccc
Q 046467 80 GSVIGVSLLWYENDNII-GELGRFKFSCFPNLRSFKIRSNYLLSGSIPSE-ITVLSTIRTLELTSNNLTGKLPN--FTVT 155 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~-~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~-~~~l~~L~~L~Ls~N~l~G~iP~--~l~~ 155 (183)
..++.|++.+..-..++ .. +.++++|++|++++|. +++ +|.. ++++++|++|++++|+++ .+|. .+.+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~ 147 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDS-----FSSLGSLEHLDLSYNY-LSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSH 147 (353)
T ss_dssp TTCCEEECTTSCCCEECTTT-----TTTCTTCCEEECCSSC-CSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTT
T ss_pred CCCCEEECCCCccCccCHhh-----cCCCCCCCEEECCCCc-CCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhcc
Confidence 35666666533211221 12 5566666666666666 664 3333 666666666666666666 3444 5566
Q ss_pred cccccEEEcccCCccccc
Q 046467 156 YYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 156 l~~L~~L~L~~n~~~~~~ 173 (183)
+++|+.|++++|+....+
T Consensus 148 l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp CTTCCEEEEEESSSCCEE
T ss_pred CCCCcEEECCCCcccccc
Confidence 666666666666533333
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.54 E-value=9.7e-08 Score=74.73 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=34.4
Q ss_pred CCCCCCCcEEeccC-CCCccccCCccccCCCCCCEEEccCCccccCCCCCcccccccc---EEEcccC
Q 046467 104 FSCFPNLRSFKIRS-NYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFY---KIVLMLS 167 (183)
Q Consensus 104 ~~~l~~L~~L~ls~-N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~---~L~L~~n 167 (183)
+..+++|++|++++ |. +++..+..+..+++|++|++++|.+++ +|. +.++++|+ .|++++|
T Consensus 76 f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred cCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCC
Confidence 44556666666665 66 664444455566666666666666554 554 44444444 5555555
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.54 E-value=1.4e-07 Score=78.16 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=75.7
Q ss_pred CccccceeCCC----------CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCc-cccCCCCCCE
Q 046467 69 CKWTGISCNSA----------GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPS-EITVLSTIRT 137 (183)
Q Consensus 69 C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~-~~~~l~~L~~ 137 (183)
|.+..|.|... ..++.|++.+.+-..+|+. .|.++++|++|+|++|+ +.+.+|. .|.++++|++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCC-CCCccChhHhhcchhhhh
Confidence 56777888531 2467777775422334322 17889999999999999 9888876 4688888775
Q ss_pred -EEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 138 -LELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 138 -L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
++++.|++++..|..+..+++|++|++++|++....+
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCc
Confidence 5667799997777888999999999999999876544
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.52 E-value=1.3e-07 Score=77.22 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=53.5
Q ss_pred CCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 105 SCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 105 ~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
..+++|++|++++|. +++ +|+.+..+++|++|++++|+++ .+|..+..+++|+.|+|++|++.|.
T Consensus 188 ~~l~~L~~L~Ls~N~-l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 188 VVFAKLKTLDLSSNK-LAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp CCCTTCCEEECCSSC-CCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred cccccCCEEECCCCc-CCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 347888888888888 885 5666888888999999999888 5788888888999999999888854
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.52 E-value=4.5e-07 Score=78.17 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=29.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
++++++|++|++++|+ +++ +| ++.+++|++|++++|++++ +| ++++++|+.|++++|+..+.
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITK 163 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCC
T ss_pred cCCCCcCCEEECCCCc-CCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccc
Confidence 4444555555555555 544 33 4455555555555555554 22 44444444444444433333
No 109
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.52 E-value=8e-08 Score=77.94 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=58.8
Q ss_pred CCCCCCcEEeccCCCCccc--cCCccccCCCCCCEEEccCCccccCCCCCccccc--cccEEEcccCCcccccCC
Q 046467 105 SCFPNLRSFKIRSNYLLSG--SIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYY--IFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 105 ~~l~~L~~L~ls~N~~l~G--~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~--~L~~L~L~~n~~~~~~~~ 175 (183)
.++++|+.|+|++|+ +++ .+|..+..+++|+.|+|++|++++. .++..+. +|+.|+|++|++++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 357899999999999 998 6778888999999999999999975 4566666 999999999999987763
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.50 E-value=4.1e-07 Score=78.47 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=24.9
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP 150 (183)
++.+++|++|++++|+ +++ +| ++.+++|++|++++|+++|..+
T Consensus 208 l~~l~~L~~L~Ls~N~-l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNK-LTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CTTCTTCSEEECCSSC-CSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred cccCCCCCEEECcCCc-ccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 4555566666666666 655 44 5556666666666666665433
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.48 E-value=2.6e-07 Score=74.92 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=39.0
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
+..+++|++|++++|+ +++. +.+..+++|++|++++|++++. +.+..+++|+.|+|++|++.+..|
T Consensus 108 l~~l~~L~~L~L~~n~-i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp GTTCTTCCEEECTTSC-CCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred hccCCCCCEEECCCCc-CCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 4555666666666666 6542 3455666666666666666643 445666666666666666655443
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.48 E-value=3.5e-07 Score=74.65 Aligned_cols=40 Identities=8% Similarity=0.050 Sum_probs=16.5
Q ss_pred ccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 129 ITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 129 ~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
+..+++|++|++++|.+++ +|. +..+++|+.|+|++|++.
T Consensus 147 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 3334444444444444442 222 444444444444444443
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.48 E-value=2.9e-07 Score=82.34 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|+.|+|++|. +++. +.+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++.+
T Consensus 127 l~~l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GGGCTTCSEEECCSSC-CCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ccCCCccCEEECCCCc-cCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 3344455555555555 4432 344455555555555555554333 4555555555555555544
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.47 E-value=3.5e-07 Score=73.18 Aligned_cols=90 Identities=9% Similarity=0.052 Sum_probs=64.7
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
..++.|++.+..-..++ . +..+++|++|++++|+ +++ +|.... ++|++|++++|++++ +| .+.++++|
T Consensus 63 ~~L~~L~L~~N~i~~~~----~--l~~l~~L~~L~L~~N~-l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L 130 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLS----P--LKDLTKLEELSVNRNR-LKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNL 130 (263)
T ss_dssp TTCCEEECCSSCCCCCG----G--GTTCSSCCEEECCSSC-CSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTC
T ss_pred CCCCEEECCCCccCCCh----h--hccCCCCCEEECCCCc-cCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccc
Confidence 46777777643212222 1 6788899999999999 886 554333 889999999999986 44 58899999
Q ss_pred cEEEcccCCcccccCCcccccc
Q 046467 160 YKIVLMLSAGVCFYNAEEVCAV 181 (183)
Q Consensus 160 ~~L~L~~n~~~~~~~~e~~~~~ 181 (183)
+.|+|++|++.+..+.+.+..+
T Consensus 131 ~~L~Ls~N~i~~~~~l~~l~~L 152 (263)
T 1xeu_A 131 EILSIRNNKLKSIVMLGFLSKL 152 (263)
T ss_dssp CEEECTTSCCCBCGGGGGCTTC
T ss_pred cEEECCCCcCCCChHHccCCCC
Confidence 9999999999876433333333
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.47 E-value=6.1e-07 Score=79.84 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=50.7
Q ss_pred CCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 109 NLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 109 ~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
+|++|++++|+ +++ +|. .+++|++|++++|++++ +|. .+++|+.|+|++|++.+ +|.
T Consensus 121 ~L~~L~Ls~N~-l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 121 SLKHLDVDNNQ-LTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp TCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred CCCEEECCCCc-CCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence 89999999999 998 887 68999999999999997 887 57899999999999887 544
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.46 E-value=3.3e-09 Score=81.17 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=56.0
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
..++.|++.+..-..+| . +..+++|++|++++|. ++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 48 ~~L~~L~ls~n~l~~l~-~-----~~~l~~L~~L~l~~n~-l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 48 KACKHLALSTNNIEKIS-S-----LSGMENLRILSLGRNL-IK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp TTCSEEECSEEEESCCC-C-----HHHHTTCCEEEEEEEE-EC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred CCCCEEECCCCCCcccc-c-----cccCCCCCEEECCCCC-cc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 35666666633212233 2 5566778888888887 77 577767667778888888888875 55 57777888
Q ss_pred cEEEcccCCccc
Q 046467 160 YKIVLMLSAGVC 171 (183)
Q Consensus 160 ~~L~L~~n~~~~ 171 (183)
+.|+|++|++..
T Consensus 118 ~~L~l~~N~i~~ 129 (198)
T 1ds9_A 118 RVLYMSNNKITN 129 (198)
T ss_dssp SEEEESEEECCC
T ss_pred CEEECCCCcCCc
Confidence 888888877764
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.46 E-value=3.9e-07 Score=81.53 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=55.8
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCcccccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAV 181 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~~~~~ 181 (183)
+..+++|+.|+|++|. +++ + +.+..+++|+.|+|++|.+++. +.+..+++|+.|+|++|++.+..|...+..+
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L 177 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 177 (605)
T ss_dssp STTCTTCCEEECTTSC-CCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred hccCCCCCEEEecCCC-CCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCC
Confidence 6677888888888888 875 3 4577888888888888888864 5688888888888888888877664444443
No 118
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.45 E-value=3.9e-07 Score=74.35 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=69.5
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
..++.|++.+..-..++ . +..+++|++|++++|. +++ + +.+..+++|++|++++|++++ +|. +..+++|
T Consensus 63 ~~L~~L~L~~n~i~~~~----~--~~~l~~L~~L~L~~n~-l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L 131 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLA----P--LKNLTKITELELSGNP-LKN-V-SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNL 131 (308)
T ss_dssp TTCCEEECCSSCCCCCG----G--GTTCCSCCEEECCSCC-CSC-C-GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTC
T ss_pred CCCCEEEccCCcCCCCh----h--HccCCCCCEEEccCCc-CCC-c-hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCC
Confidence 46778888744222222 1 6788999999999999 986 3 468899999999999999986 554 8999999
Q ss_pred cEEEcccCCcccccCCcccccc
Q 046467 160 YKIVLMLSAGVCFYNAEEVCAV 181 (183)
Q Consensus 160 ~~L~L~~n~~~~~~~~e~~~~~ 181 (183)
+.|++++|++.+..+...+..+
T Consensus 132 ~~L~l~~n~l~~~~~l~~l~~L 153 (308)
T 1h6u_A 132 QVLYLDLNQITNISPLAGLTNL 153 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTC
T ss_pred CEEECCCCccCcCccccCCCCc
Confidence 9999999999876554444333
No 119
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.44 E-value=1.4e-07 Score=77.11 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=37.9
Q ss_pred CCCCCCCcEEeccCCCCccccCCccc-cCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEI-TVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~-~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|++|++++|. +++..|..+ ..+++|++|++++|.+++. |. ...+++|+.|+|++|++.+
T Consensus 140 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp TGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred hhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence 4455666666666666 665555544 2556666666666666543 32 2346666666666666654
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.42 E-value=3.7e-07 Score=78.30 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=35.3
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA 175 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~ 175 (183)
+..+++|+.|++++|+ +++..| +..+++|++|++++|.+++. +.+.++++|+.|++++|++.+..|.
T Consensus 305 ~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~ 371 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 371 (466)
T ss_dssp GGGCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGG
T ss_pred hcCCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchh
Confidence 3445555555555555 555433 44555555555555555543 2455555555555555555555443
No 121
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.41 E-value=2.1e-07 Score=76.31 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=57.4
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
+..+++|+.|++++|. +++..|..++.+++|++|++++|++++..| +..+++|+.|++++|++.
T Consensus 283 ~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 6788999999999999 999999999999999999999999998666 899999999999999874
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.38 E-value=5.7e-07 Score=77.13 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=59.9
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF 159 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L 159 (183)
..++.|++.+.....++ ++.++++|++|++++|. +++..| ++++++|++|++++|.+++. |+ +.++++|
T Consensus 68 ~~L~~L~Ls~n~l~~~~------~~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 136 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNL 136 (466)
T ss_dssp TTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred cCCCEEECCCCccCCch------hhhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCC
Confidence 45677777643211221 16778888888888888 886544 88888888888888888864 43 8888888
Q ss_pred cEEEcccCCccccc
Q 046467 160 YKIVLMLSAGVCFY 173 (183)
Q Consensus 160 ~~L~L~~n~~~~~~ 173 (183)
+.|++++|++....
T Consensus 137 ~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 137 NRLELSSNTISDIS 150 (466)
T ss_dssp SEEEEEEEEECCCG
T ss_pred CEEECCCCccCCCh
Confidence 88888888877543
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.37 E-value=1.4e-06 Score=69.57 Aligned_cols=63 Identities=24% Similarity=0.191 Sum_probs=32.6
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|+.|++++|+ +++. | .+..+++|++|++++|++++. ..+..+++|+.|++++|++.+
T Consensus 124 l~~l~~L~~L~Ls~N~-i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNK-LKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GTTCTTCCEEECTTSC-CCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred hcCcccccEEECCCCc-CCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 4445555555555555 5542 2 345555555555555555543 345555555555555555543
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.33 E-value=8.3e-07 Score=79.69 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=53.2
Q ss_pred CCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467 105 SCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN 174 (183)
Q Consensus 105 ~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~ 174 (183)
..+++|+.|++++|+ ++ .+|. .+++|++|+|++|+++ .||..+.++++|+.|+|++|++++..|
T Consensus 238 ~~l~~L~~L~Ls~N~-L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 238 VLPSELKELMVSGNR-LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CCCTTCCEEECCSSC-CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCCcCcEEECCCCC-CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 345678888888888 87 4666 5788999999999999 889999999999999999999886543
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.32 E-value=8.4e-07 Score=76.44 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=37.8
Q ss_pred CCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc--CCCCCcccc-------------ccccEEEcccCCccc
Q 046467 107 FPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG--KLPNFTVTY-------------YIFYKIVLMLSAGVC 171 (183)
Q Consensus 107 l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G--~iP~~l~~l-------------~~L~~L~L~~n~~~~ 171 (183)
+++|++|++++|. ++ .+|. .+++|++|++++|+++| .+|.+++++ ++|+.|++++|++.+
T Consensus 336 ~~~L~~L~L~~N~-l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 336 PPRLERLIASFNH-LA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CTTCCEEECCSSC-CS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCcCCEEECCCCc-cc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 4678888888888 88 4776 47889999999999999 899888888 889999999999987
Q ss_pred --ccCC
Q 046467 172 --FYNA 175 (183)
Q Consensus 172 --~~~~ 175 (183)
.+|.
T Consensus 411 ~~~iP~ 416 (454)
T 1jl5_A 411 FPDIPE 416 (454)
T ss_dssp ------
T ss_pred cccchh
Confidence 6664
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.32 E-value=1.2e-07 Score=77.30 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=35.7
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCC-ccccC-CCCCccccccccEEEcccC-Ccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSN-NLTGK-LPNFTVTYYIFYKIVLMLS-AGV 170 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N-~l~G~-iP~~l~~l~~L~~L~L~~n-~~~ 170 (183)
+..+++|++|++++|. +++.+|..++++++|++|++++| .+++. +|..+.++++|+.|+|++| ++.
T Consensus 114 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 3445555555555555 55555555555555555555555 45442 4444555555555555555 443
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.26 E-value=2.7e-06 Score=73.22 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=39.4
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
++++++|++|++++|+ +++ +|..+ .+|++|++++|++++ +| +++++++|+.|++++|++.+
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred cCCCCCCCEEECCCCc-Ccc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 5566666666666666 664 55432 366666666666665 55 46777777777777777665
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.21 E-value=7.8e-07 Score=79.89 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=43.1
Q ss_pred CCC-CCCCCCcccccee------CC-CCCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCC
Q 046467 61 TGN-YTSDHCKWTGISC------NS-AGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVL 132 (183)
Q Consensus 61 ~~W-~~~~~C~w~gv~C------~~-~~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l 132 (183)
..| ...++|.|.|..| .. ...++.|++.+.+-..+|..+ . ++|++|++++|+ ++ .+|. .+
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l-----~--~~L~~L~L~~N~-l~-~lp~---~l 80 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCL-----P--AHITTLVIPDNN-LT-SLPA---LP 80 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCSCC-----C--TTCSEEEECSCC-CS-CCCC---CC
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcCccChhh-----C--CCCcEEEecCCC-CC-CCCC---cC
Confidence 456 3567788866421 11 124667777644333444331 1 345555555554 44 2443 23
Q ss_pred CCCCEEEccCCccccCCCCCccccccccEEEcccCCc
Q 046467 133 STIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAG 169 (183)
Q Consensus 133 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~ 169 (183)
++|++|+|++|+++ .+|. .+++|++|+|++|++
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCC
T ss_pred CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcC
Confidence 44444444444444 2443 333444444444433
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.17 E-value=2.2e-07 Score=77.66 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=47.7
Q ss_pred CCCCCCCcEEeccCCCCcccc----CCccc--cCCCCCCEEEccCCcccc----CCCCCc-cccccccEEEcccCCcccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGS----IPSEI--TVLSTIRTLELTSNNLTG----KLPNFT-VTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~----iP~~~--~~l~~L~~L~Ls~N~l~G----~iP~~l-~~l~~L~~L~L~~n~~~~~ 172 (183)
+..+++|++|++++|. +++. +|..+ +.+++|++|+|++|.+++ .+|..+ .++++|+.|+|++|++.+.
T Consensus 240 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 5566677777777777 7665 55555 337777777777777776 477666 5577777777777777654
Q ss_pred c
Q 046467 173 Y 173 (183)
Q Consensus 173 ~ 173 (183)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.15 E-value=2e-07 Score=76.07 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=34.5
Q ss_pred CCCCCCcEEeccCCCCcccc-CCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccC
Q 046467 105 SCFPNLRSFKIRSNYLLSGS-IPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLS 167 (183)
Q Consensus 105 ~~l~~L~~L~ls~N~~l~G~-iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n 167 (183)
..+++|++|++++|. +++. +|..+..+++|++|++++|.+++.+|..++++++|+.|+|++|
T Consensus 90 ~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 90 FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 344555555555555 5544 5555555555555555555555555555555555555555555
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.08 E-value=1.2e-06 Score=73.20 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=43.4
Q ss_pred CCCCCCCcEEeccCCCCccc----cCCccccCCCCCCEEEccCCccccCCCCCccc----c---------ccccEEEccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSG----SIPSEITVLSTIRTLELTSNNLTGKLPNFTVT----Y---------YIFYKIVLML 166 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G----~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~----l---------~~L~~L~L~~ 166 (183)
+..+++|++|++++|. +++ .+|..+..+++|++|+|++|.+++..+..+.. + ++|+.|+|++
T Consensus 90 l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 3566777777777777 766 46666677777777777777776444433333 2 6777777777
Q ss_pred CCcc
Q 046467 167 SAGV 170 (183)
Q Consensus 167 n~~~ 170 (183)
|++.
T Consensus 169 n~l~ 172 (386)
T 2ca6_A 169 NRLE 172 (386)
T ss_dssp SCCT
T ss_pred CCCC
Confidence 7765
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.07 E-value=3.6e-07 Score=69.66 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=59.5
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
+..+++|++|++++|. +++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|+|++|++.+
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred HhcCCCCCEEECCCCC-Ccc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence 7788999999999999 997 78 8999999999999999999 799988889999999999999876
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.00 E-value=1.2e-06 Score=72.81 Aligned_cols=63 Identities=21% Similarity=0.151 Sum_probs=43.6
Q ss_pred CCCcEEeccCCCCccccCCccccC----C-CCCCEEEccCCccccCCCCCccc-----cccccEEEcccCCccc
Q 046467 108 PNLRSFKIRSNYLLSGSIPSEITV----L-STIRTLELTSNNLTGKLPNFTVT-----YYIFYKIVLMLSAGVC 171 (183)
Q Consensus 108 ~~L~~L~ls~N~~l~G~iP~~~~~----l-~~L~~L~Ls~N~l~G~iP~~l~~-----l~~L~~L~L~~n~~~~ 171 (183)
++|++|++++|. +++..+..++. + ++|++|++++|.+++..+..+.. .++|+.|+|++|++..
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 678888888888 77666654433 3 77888888888887665554443 2578888888877763
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.95 E-value=1.8e-06 Score=71.72 Aligned_cols=92 Identities=20% Similarity=0.164 Sum_probs=67.9
Q ss_pred CCEEEEEeCccCCCcccC-CcCCccCCCCC-CCcEEeccCCCCccccCCccccCC-----CCCCEEEccCCccccCCCCC
Q 046467 80 GSVIGVSLLWYENDNIIG-ELGRFKFSCFP-NLRSFKIRSNYLLSGSIPSEITVL-----STIRTLELTSNNLTGKLPNF 152 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~-~~g~l~~~~l~-~L~~L~ls~N~~l~G~iP~~~~~l-----~~L~~L~Ls~N~l~G~iP~~ 152 (183)
..++.|++.+..-+..+. .+.. .+..++ +|++|++++|. +++..+..+..+ ++|++|++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 358888887542122111 0000 055677 89999999999 998878777775 99999999999999888876
Q ss_pred cccc-----ccccEEEcccCCccccc
Q 046467 153 TVTY-----YIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 153 l~~l-----~~L~~L~L~~n~~~~~~ 173 (183)
++.. ++|+.|+|++|++....
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHH
Confidence 6654 89999999999987543
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=6.9e-06 Score=66.46 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=57.8
Q ss_pred CCEEEEEeCccCCCcccCCcCCcc--CCCCCCCcEEeccCCCCccccCCccccCCC--CCCEEEccCCccccCCCC----
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFK--FSCFPNLRSFKIRSNYLLSGSIPSEITVLS--TIRTLELTSNNLTGKLPN---- 151 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~--~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~--~L~~L~Ls~N~l~G~iP~---- 151 (183)
..+..|++++..-..++ .++ +..+++|+.|+|++|+ +++. .++..++ +|++|+|++|.+++.+|.
T Consensus 170 ~~L~~L~Ls~N~l~~l~----~l~~~~~~l~~L~~L~Ls~N~-i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLD----DMSSIVQKAPNLKILNLSGNE-LKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp TTCCEEECTTSCCCCCG----GGTTHHHHSTTCCEEECTTSC-CCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred CCCCEEECCCCCCCCCc----cchhHHhhCCCCCEEECCCCc-cCCc--hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 47888998854211111 111 4578999999999999 9975 4455555 999999999999999984
Q ss_pred ---CccccccccEEE
Q 046467 152 ---FTVTYYIFYKIV 163 (183)
Q Consensus 152 ---~l~~l~~L~~L~ 163 (183)
-+..+|+|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 267899999987
No 136
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.71 E-value=9.6e-05 Score=53.15 Aligned_cols=59 Identities=22% Similarity=0.169 Sum_probs=35.5
Q ss_pred EEeccCCCCcc-ccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467 112 SFKIRSNYLLS-GSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY 173 (183)
Q Consensus 112 ~L~ls~N~~l~-G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~ 173 (183)
.++.+++. ++ ..+|..+ ..+|++|+|++|+|+.--+..+..+++|+.|+|.+|++.|-+
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCC-CccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 45555555 54 3455443 235677777777777422334566777777777777777643
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.67 E-value=7.8e-05 Score=61.49 Aligned_cols=64 Identities=8% Similarity=0.063 Sum_probs=52.6
Q ss_pred CCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCCC-CccccccccE-EEcccCCccccc
Q 046467 108 PNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLPN-FTVTYYIFYK-IVLMLSAGVCFY 173 (183)
Q Consensus 108 ~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~-L~L~~n~~~~~~ 173 (183)
+++++|++++|+ ++. || ..|.++++|++|+|++|++.+.+|. .+.++++++. +.+..|++....
T Consensus 30 ~~l~~L~Ls~N~-i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TTCSEEEEESCC-CSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCEEEccCCc-CCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 689999999999 995 65 4689999999999999999988886 4678988876 555667776543
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.64 E-value=3.2e-06 Score=71.62 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=49.9
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccC-----CCCCCEEEccCCcccc----CCCCCccccccccEEEcccCCcccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITV-----LSTIRTLELTSNNLTG----KLPNFTVTYYIFYKIVLMLSAGVCF 172 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~-----l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~L~~n~~~~~ 172 (183)
+..+++|++|++++|. +++..+..+.. .++|++|++++|.+++ .+|..+.++++|+.|+|++|++...
T Consensus 337 l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 337 LAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 3345777888888887 77655544432 5678888888888876 7787788888888888888887643
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.42 E-value=2e-05 Score=66.62 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=45.5
Q ss_pred CCcEEeccCCCCccc----cCCccccCCCCCCEEEccCCccccCCCCCccc-----cccccEEEcccCCccc
Q 046467 109 NLRSFKIRSNYLLSG----SIPSEITVLSTIRTLELTSNNLTGKLPNFTVT-----YYIFYKIVLMLSAGVC 171 (183)
Q Consensus 109 ~L~~L~ls~N~~l~G----~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~-----l~~L~~L~L~~n~~~~ 171 (183)
+|++|++++|. ++. .+|..+..+++|++|++++|.+++..+..+.. .++|+.|+|++|++..
T Consensus 86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred ceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 68888888888 773 56777888888888888888877655544332 4568888888887664
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.41 E-value=2.7e-05 Score=68.00 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=52.5
Q ss_pred CCCCCcEEeccCCCCccc-cCCccccCCCCCCEEEccCCccccC-CCCCccccccccEEEcccCCccc
Q 046467 106 CFPNLRSFKIRSNYLLSG-SIPSEITVLSTIRTLELTSNNLTGK-LPNFTVTYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G-~iP~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~L~~n~~~~ 171 (183)
.+++|++|++++|. +++ .++..+..+++|++|++++|.+++. ++..+..+++|+.|+|++|++..
T Consensus 461 ~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp SCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred hCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 37789999999999 887 4556667889999999999998766 34445678999999999999763
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.24 E-value=4.5e-05 Score=64.08 Aligned_cols=65 Identities=8% Similarity=0.055 Sum_probs=34.9
Q ss_pred CCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccccC----CCCCccccccccEEEcccCCcc
Q 046467 105 SCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLTGK----LPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 105 ~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
...++|++|+|++|. ++.. ++..+...+.|++|+|++|.++.. ++..+...++|++|+|+.|++.
T Consensus 180 ~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 344556666666666 5431 233444555666666666666532 2233334566666666666654
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.06 E-value=0.00013 Score=61.17 Aligned_cols=64 Identities=9% Similarity=0.095 Sum_probs=46.7
Q ss_pred CCCCCcEEeccCCCCccc----cCCccccCCCCCCEEEccCCccccC----CCCCccccccccEEEcccCCcc
Q 046467 106 CFPNLRSFKIRSNYLLSG----SIPSEITVLSTIRTLELTSNNLTGK----LPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G----~iP~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
..++|+.|++++|. ++. .++..+..+++|++|+|++|.++.. ++..+...++|+.|+|++|++.
T Consensus 153 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 153 DQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 45678888888888 764 2445556778888888888888652 2445666778888888888775
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.94 E-value=0.00014 Score=61.07 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=43.5
Q ss_pred CCCCCcEEeccCCCCccccCCcccc---CCCCCCEEEccCCccccC----CCCCccccccccEEEcccCCcc
Q 046467 106 CFPNLRSFKIRSNYLLSGSIPSEIT---VLSTIRTLELTSNNLTGK----LPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~iP~~~~---~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
.+++|++|++.+|. +.+..+..+. .+++|++|+|+.|.+++. ++..+.++++|+.|+|++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 46778888887777 6654433332 466788888888887763 4555567788888888777544
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.93 E-value=0.00012 Score=63.79 Aligned_cols=64 Identities=5% Similarity=0.044 Sum_probs=36.7
Q ss_pred CCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccc----cCCCCCccccccccEEEcccCCcc
Q 046467 106 CFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLT----GKLPNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~----G~iP~~l~~l~~L~~L~L~~n~~~ 170 (183)
.+++|++|++++|. +++. ++.....+++|++|++++|.++ +.++..+.++++|+.|+|++|.+.
T Consensus 162 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 162 HCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred hCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 45667777777766 6554 3334445666666666666665 233333445666666666665543
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.79 E-value=0.00032 Score=52.95 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=43.4
Q ss_pred CCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEc--cCCccccCC----CCCccccccccEEEcccCCcc
Q 046467 105 SCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLEL--TSNNLTGKL----PNFTVTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 105 ~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~L--s~N~l~G~i----P~~l~~l~~L~~L~L~~n~~~ 170 (183)
...+.|++|+|++|. ++.. +...+...+.|++|+| ++|.++..- -..+...++|+.|+|+.|.+.
T Consensus 90 ~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344678888888888 7653 4455666777888888 777776542 223444577888888777654
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.77 E-value=0.00021 Score=62.27 Aligned_cols=62 Identities=8% Similarity=-0.038 Sum_probs=40.5
Q ss_pred CCCCcEEeccCCCCccccCCccc-cCCCCCCEEEccCCccccCCCC-CccccccccEEEcccCCc
Q 046467 107 FPNLRSFKIRSNYLLSGSIPSEI-TVLSTIRTLELTSNNLTGKLPN-FTVTYYIFYKIVLMLSAG 169 (183)
Q Consensus 107 l~~L~~L~ls~N~~l~G~iP~~~-~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~L~~n~~ 169 (183)
+++|+.|++++|. +++..+..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5667777777777 665544444 5577777777777777554443 234577777777777766
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.41 E-value=0.00068 Score=51.10 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=61.1
Q ss_pred CCEEEEEeCccCCCcccCC-cCCcc--CCCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccccC----
Q 046467 80 GSVIGVSLLWYENDNIIGE-LGRFK--FSCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLTGK---- 148 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~-~g~l~--~~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~G~---- 148 (183)
..++.|++.+. ..+... +..+. +...++|++|+|++|. +... +...+...+.|++|+|++|.++..
T Consensus 36 ~~L~~L~L~~n--~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 36 PDLEEVNLNNI--MNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCCEEECTTC--TTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCEEEecCC--CCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 46778888643 022111 00010 5567899999999999 8642 344566678899999999999864
Q ss_pred CCCCccccccccEEEc--ccCCcc
Q 046467 149 LPNFTVTYYIFYKIVL--MLSAGV 170 (183)
Q Consensus 149 iP~~l~~l~~L~~L~L--~~n~~~ 170 (183)
+...+...+.|+.|+| +.|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCceEEEecCCCCCCC
Confidence 4556777889999999 778765
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.38 E-value=0.00042 Score=60.29 Aligned_cols=63 Identities=10% Similarity=0.000 Sum_probs=45.0
Q ss_pred CCCCCcEEeccCCCCccccCCccccC-CCCCCEEEccCCccccCCCCCc-cccccccEEEcccCCcc
Q 046467 106 CFPNLRSFKIRSNYLLSGSIPSEITV-LSTIRTLELTSNNLTGKLPNFT-VTYYIFYKIVLMLSAGV 170 (183)
Q Consensus 106 ~l~~L~~L~ls~N~~l~G~iP~~~~~-l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~L~~n~~~ 170 (183)
.+++|+.|++++ + +++..+..++. +++|++|++++|.+++..+..+ ..+++|+.|+|++|++.
T Consensus 430 ~~~~L~~L~L~~-~-l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 430 HCKDLRRLSLSG-L-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HCTTCCEEECCS-S-CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred hCCCccEEeecC-c-ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 455677777755 5 56555555555 7888888888888876655555 56888999999888874
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.26 E-value=0.012 Score=47.75 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=54.6
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCC-EEEccCCccccCCCCCcccccc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIR-TLELTSNNLTGKLPNFTVTYYI 158 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~-~L~Ls~N~l~G~iP~~l~~l~~ 158 (183)
..++.+++.+.+-..++. -.|..+++|+.+++++| ++..-+..|.++++|+ .+++.+ +++---+..+.++++
T Consensus 226 ~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp TTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred CCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 356666665321122221 12777888888888776 4533334578888888 888887 565333466778888
Q ss_pred ccEEEcccCCcc
Q 046467 159 FYKIVLMLSAGV 170 (183)
Q Consensus 159 L~~L~L~~n~~~ 170 (183)
|+.+++..|++.
T Consensus 299 L~~l~l~~n~i~ 310 (329)
T 3sb4_A 299 LRYVLATGDKIT 310 (329)
T ss_dssp EEEEEECSSCCC
T ss_pred CCEEEeCCCccC
Confidence 888888777765
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.92 E-value=0.013 Score=47.55 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=47.7
Q ss_pred CCCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCC-CCcccccccc-EEEccc
Q 046467 107 FPNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFY-KIVLML 166 (183)
Q Consensus 107 l~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~-~L~L~~ 166 (183)
+++|+.+++++|+ ++ .|| ..|.++++|+++++.+| ++ .|+ ..+.++++|+ .+++..
T Consensus 225 ~~~L~~l~L~~n~-i~-~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTN-AT-TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBC-CC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCC-cc-eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc
Confidence 7899999999999 88 455 46899999999999998 66 455 4688999999 999876
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.46 E-value=0.024 Score=40.35 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=31.8
Q ss_pred CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccc
Q 046467 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLT 146 (183)
Q Consensus 108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~ 146 (183)
++|+.|+|++|+ |+..-+..|..+++|++|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 479999999999 99543455788999999999999764
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.85 E-value=0.0071 Score=45.75 Aligned_cols=85 Identities=9% Similarity=0.018 Sum_probs=57.8
Q ss_pred CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCC----CCCCEEEccCCc-cccCCCCCcc
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVL----STIRTLELTSNN-LTGKLPNFTV 154 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l----~~L~~L~Ls~N~-l~G~iP~~l~ 154 (183)
..++.|++++.. +... |--.+..+++|+.|+|+++..++..-=..++.+ ++|++|+|+++. +|..==..+.
T Consensus 61 ~~L~~LDLs~~~---Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSC---IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCC---CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCC---ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 478999998541 2211 111167899999999999853554333345554 379999999974 6543334577
Q ss_pred ccccccEEEcccCC
Q 046467 155 TYYIFYKIVLMLSA 168 (183)
Q Consensus 155 ~l~~L~~L~L~~n~ 168 (183)
++++|+.|+|+.-.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 89999999998654
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.59 E-value=0.14 Score=43.07 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=38.7
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLS 167 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n 167 (183)
|..+++|+.++++.|+ ++ .||.....+++|+.+.+.+| ++ .|+ ..+.++++|+.++|..|
T Consensus 176 F~~c~~L~~l~l~~n~-l~-~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTK-IT-KLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp TTTCTTCCEEECTTSC-CS-EECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT
T ss_pred hhCcccCCeeecCCCc-ce-EechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC
Confidence 6677778888887777 76 45554444677777777644 44 333 34666777777777543
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.56 E-value=0.21 Score=41.91 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=8.9
Q ss_pred CCCCCCCcEEeccCCC
Q 046467 104 FSCFPNLRSFKIRSNY 119 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~ 119 (183)
|..+++|+.+++.+|.
T Consensus 267 F~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 267 FYYCPELAEVTTYGST 282 (401)
T ss_dssp TTTCTTCCEEEEESSC
T ss_pred hhCCCCCCEEEeCCcc
Confidence 5555556666555544
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=92.27 E-value=0.036 Score=41.78 Aligned_cols=60 Identities=3% Similarity=0.030 Sum_probs=44.6
Q ss_pred CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCc-cccCCCCCcccc----ccccEEEcccCC
Q 046467 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNN-LTGKLPNFTVTY----YIFYKIVLMLSA 168 (183)
Q Consensus 108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~-l~G~iP~~l~~l----~~L~~L~L~~n~ 168 (183)
-+|+.||++++. ++..=-..+..+++|++|+|+++. ++..-=..++.+ ++|+.|+|+...
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 369999999998 875444557889999999999985 654322335553 479999998754
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=92.10 E-value=0.055 Score=45.11 Aligned_cols=65 Identities=6% Similarity=0.013 Sum_probs=40.9
Q ss_pred CCCCCcEEeccC--CCCcccc-----CCccc--cCCCCCCEEEccCCccccCCCCCcc---ccccccEEEcccCCccc
Q 046467 106 CFPNLRSFKIRS--NYLLSGS-----IPSEI--TVLSTIRTLELTSNNLTGKLPNFTV---TYYIFYKIVLMLSAGVC 171 (183)
Q Consensus 106 ~l~~L~~L~ls~--N~~l~G~-----iP~~~--~~l~~L~~L~Ls~N~l~G~iP~~l~---~l~~L~~L~L~~n~~~~ 171 (183)
.+++|++|+|+. |. ..|. +-..+ ..+++|++|+|.+|.+++..+..+. .+++|++|+|+.|.+..
T Consensus 217 ~lp~L~~L~L~~~~~~-~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVED-YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp BCTTCCEEEEECBCGG-GTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred cCCCCcEEEEeccccc-cccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 577888887753 22 1111 11112 2467888888888888765544343 47888999998887764
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.00 E-value=0.69 Score=37.71 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=38.9
Q ss_pred CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCC-CccccccccEEEccc
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPN-FTVTYYIFYKIVLML 166 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~L~~ 166 (183)
|..+++|+.+.+.++. ++-.=...|.++.+|+.++|.++ ++ .|+. .+.++++|+.+.+..
T Consensus 282 F~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 5667777777777776 66322345777788888887654 43 3443 466777777777643
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.71 E-value=0.22 Score=38.13 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=51.8
Q ss_pred CCEEEEEeCccCCCcccCCcC--Ccc--CCCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccccCCCC
Q 046467 80 GSVIGVSLLWYENDNIIGELG--RFK--FSCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLTGKLPN 151 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g--~l~--~~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~G~iP~ 151 (183)
..++.|++.+. ..+... | .+- +..-+.|+.|+|++|. +... |-+.+..-+.|++|+|++|.++..=-.
T Consensus 41 ~~L~~L~L~~n--n~igd~-ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 41 TDLKEVNINNM--KRVSKE-RIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp SSCCEEECTTC--CSSCHH-HHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred CCccEEECCCC--CCCCHH-HHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 46788888642 122111 1 000 4556789999999999 7632 222344568899999999998743211
Q ss_pred ----CccccccccEEEcccC
Q 046467 152 ----FTVTYYIFYKIVLMLS 167 (183)
Q Consensus 152 ----~l~~l~~L~~L~L~~n 167 (183)
.+..-+.|+.|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 2333456999999754
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=86.77 E-value=1.1 Score=36.88 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=37.1
Q ss_pred CCCCCCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLS 167 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n 167 (183)
|..+.+|+.+++..+ ++ .|+ ..|.++++|+.+++..| ++ .|+ ..+.++++|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~--v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL--VE-EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT--CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCCc--cc-EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 566667777777533 44 343 45667777888777665 44 344 35667778888777544
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.22 E-value=1.7 Score=35.69 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=36.9
Q ss_pred CCCCCCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCCC-CccccccccEEEcccCC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLPN-FTVTYYIFYKIVLMLSA 168 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~L~~n~ 168 (183)
|..+.+|+.+++..+ ++ .|. ..|.+|++|+.+.+..+ ++ .|+. .+.++++|+.+++..+.
T Consensus 307 F~~c~~L~~i~lp~~--v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG--IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEECCTT--CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred ecCCCCcCEEEeCCc--cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 555666777666543 33 233 34667777777777654 43 3543 46677888888776654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.12 E-value=0.39 Score=36.72 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCEEEEEeCccCCCcccCCcCCcc----CCCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCc---cccC
Q 046467 80 GSVIGVSLLWYENDNIIGELGRFK----FSCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNN---LTGK 148 (183)
Q Consensus 80 ~~v~~L~l~~l~~g~l~~~~g~l~----~~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~---l~G~ 148 (183)
..++.|++.+.+ +... |... +..-+.|+.|+|++|. ++.. |-+.+..-+.|++|+|++|. +...
T Consensus 70 ~~L~~L~L~~n~---igd~-ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 70 KHIEKFSLANTA---ISDS-EARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp SCCCEEECTTSC---CBHH-HHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred CCcCEEEccCCC---CChH-HHHHHHHHHhcCCccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 467888887432 2111 1111 3345679999999999 7643 22345556779999998652 2221
Q ss_pred ----CCCCccccccccEEEcccCC
Q 046467 149 ----LPNFTVTYYIFYKIVLMLSA 168 (183)
Q Consensus 149 ----iP~~l~~l~~L~~L~L~~n~ 168 (183)
|-..+..-+.|+.|+++.|.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCcCeEeccCCC
Confidence 11223344788899987654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.13 E-value=4.3 Score=32.88 Aligned_cols=60 Identities=8% Similarity=0.185 Sum_probs=41.9
Q ss_pred CCCCCCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLS 167 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n 167 (183)
+.....|+.+.+..+ +. .++ ..+..+++|+.+.+.++.++ .|+ ..+.++++|+.+.|..+
T Consensus 259 F~~~~~l~~i~l~~~--i~-~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 259 LQNCTALKTLNFYAK--VK-TVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTCTTCCEEEECCC--CS-EECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT
T ss_pred cceeehhcccccccc--ce-eccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc
Confidence 555666777766543 33 233 35778899999999888777 454 46778999999988644
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=71.56 E-value=9.1 Score=31.22 Aligned_cols=59 Identities=15% Similarity=0.300 Sum_probs=35.2
Q ss_pred CCCCCCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLS 167 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n 167 (183)
+.+.+.|+.+.+.. . ++ .|+ ..|.++.+|+.++|..+ ++ .|+ ..+.++++|+.+.|..+
T Consensus 284 F~~c~~L~~i~l~~-~-i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-R-IT-ELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp TTTCTTCCEEECCT-T-CC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT
T ss_pred cccccccccccCCC-c-cc-ccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc
Confidence 44555566665542 2 33 344 34667788888887654 43 343 34667788888877543
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=67.44 E-value=9.9 Score=31.02 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=41.4
Q ss_pred CCCCCCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcccC
Q 046467 104 FSCFPNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLS 167 (183)
Q Consensus 104 ~~~l~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n 167 (183)
+....+|+.+.+..+ ++ .|+ ..|.++++|+.++|.++ ++ .|+ ..+.++++|+.+.+..|
T Consensus 293 F~~~~~L~~i~l~~~--i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VK-FIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECTT--CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccc--cc-eechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence 556677777777554 44 344 45778999999999754 54 454 45778899999988655
Done!