BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046469
(521 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 600 bits (1546), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/498 (60%), Positives = 360/498 (72%), Gaps = 45/498 (9%)
Query: 24 HGAYSDDDEDKIVSNVECHYAQARIGECIFDLGDCAYIKGEGTQKHIGKILEFFKTTDGE 83
G S+DDEDKIV+NVECHY+QA++ F LGD AYIKGE + H+G+I+EFFKTTDGE
Sbjct: 551 RGQQSEDDEDKIVANVECHYSQAKVDGHTFSLGDFAYIKGEEEETHVGQIVEFFKTTDGE 610
Query: 84 EYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSN 143
YFRVQWFYRA DT+M+ A HD++RLFYSTVMNDNPVDC+ISKV V Q+ P++GLK N
Sbjct: 611 SYFRVQWFYRATDTIMERQATNHDKRRLFYSTVMNDNPVDCLISKVTVLQVSPRVGLKPN 670
Query: 144 SIPSSDFYFDMEYCVEYSTFRTLLTGKIHDLSLPSCTETVPTTATSTFFENMPNHGPHKA 203
SI SD+YFDMEYCVEYSTF+TL K + L C + VPT +T + + G
Sbjct: 671 SI-KSDYYFDMEYCVEYSTFQTLRNPKTSENKLECCADVVPTESTESILKKKSFSG---- 725
Query: 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAE 263
EL +LDLYSGCGGMSTGL LGAK+S ++VT+WA+D + +AC+SLKLNHP QVRN+AA
Sbjct: 726 ELPVLDLYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNTAACKSLKLNHPNTQVRNDAAG 785
Query: 264 DFLELVKEWQKLCKRFAVNIVERENKQRSMSQRVTRNSVNSPSITRNSVDSPKVTGNSVD 323
DFL+L+KEW KLCKR+ N N QR+ + R
Sbjct: 786 DFLQLLKEWDKLCKRYVFN-----NDQRTDTLR--------------------------- 813
Query: 324 SPRVTRSSVNSPRVTRNSVNSPRDVDIPPGEYEVARIVDICYGDPNESGKRGLNFKVHWK 383
SVNS + T S +S D EYEV ++VDIC+GD +++GK GL FKVHWK
Sbjct: 814 -------SVNSTKETSGSSSSSDDDSDSE-EYEVEKLVDICFGDHDKTGKNGLKFKVHWK 865
Query: 384 GYSTSEDSWEPIEGLRNCPERIKEFVRNGFKSKILPLPGDVDVICGGPPCQGISGYNRFR 443
GY + ED+WE E L NC + I+EFV +GFKSKILPLPG V VICGGPPCQGISGYNR R
Sbjct: 866 GYRSDEDTWELAEELSNCQDAIREFVTSGFKSKILPLPGRVGVICGGPPCQGISGYNRHR 925
Query: 444 NVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSRLVHMKYQA 503
NVDSPL+DERN+QI++FMDIVE+LKP YVLMENVVDIL+ DK SLGRYALSRLV+M+YQA
Sbjct: 926 NVDSPLNDERNQQIIVFMDIVEYLKPSYVLMENVVDILRMDKGSLGRYALSRLVNMRYQA 985
Query: 504 RFGIIAAGCYGLPQFRLR 521
R GI+ AGCYGL QFR R
Sbjct: 986 RLGIMTAGCYGLSQFRSR 1003
>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
Length = 912
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/506 (46%), Positives = 303/506 (59%), Gaps = 69/506 (13%)
Query: 25 GAYSDDDEDKIVSNVECHYAQARIGECIFDLGDCAYIK-GEGTQKHIGKILEFFKTTDGE 83
A D+E+++ CHY A++ ++ LGD Y+K GE +IG+I EFF+ TD
Sbjct: 160 AAKKPDEEEEL--KARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQC 217
Query: 84 EYFRVQWFYRAEDTVMKEAADF------HDRKRLFYSTVMNDNPVDCIISKVIVAQIPPK 137
YF +WF+RAEDTV+ HD +R+F S NDN +DCIISKV + + P
Sbjct: 218 HYFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPN 277
Query: 138 IGLKSNS--IPSSDFYFDMEYCVEYSTFRTLLTGKIHDLSLPSCTETVPTTATSTFFENM 195
+ K+ + I S D Y+DM Y V YSTF I + S ++T ++
Sbjct: 278 MDPKAKAQLIESCDLYYDMSYSVAYSTF-----ANISSENGQSGSDTASGISSDDVDLET 332
Query: 196 PNHGPHKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEA 255
+ P + LLDLYSGCGGMSTGLCLGA LS L TRWA+D + AC+SLK NHP+
Sbjct: 333 SSSMPTRT-ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQT 391
Query: 256 QVRNEAAEDFLELVKEWQKLCKRFAVNIVERENKQRSMSQRVTRNSVNSPSITRNSVDSP 315
+VRNE A++FL L+KEW LCK++ Q V N +S + D
Sbjct: 392 EVRNEKADEFLALLKEWAVLCKKYV--------------QDVDSNLASS----EDQADE- 432
Query: 316 KVTGNSVDSPRVTRSSVNSPRVTRNSVNSPRDVDIPPGEYEVARIVDICYGDPNESGKRG 375
+SP D D E+ V ++V ICYG + + G
Sbjct: 433 ---------------------------DSPLDKD----EFVVEKLVGICYGGSDR--ENG 459
Query: 376 LNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGFKSKILPLPGDVDVICGGPPCQG 435
+ FKV W+GY ED+WEPI+ L +CP++I+EFV+ G K KILPLPGDVDVICGGPPCQG
Sbjct: 460 IYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQEGHKRKILPLPGDVDVICGGPPCQG 519
Query: 436 ISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSR 495
ISG+NR+RN D PL DE+N+Q+V FMDIV +LKPKYVLMENVVDILKF LG+YALS
Sbjct: 520 ISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSC 579
Query: 496 LVHMKYQARFGIIAAGCYGLPQFRLR 521
LV MKYQAR G++ AGCYGLPQFR+R
Sbjct: 580 LVAMKYQARLGMMVAGCYGLPQFRMR 605
>sp|Q8LPU5|CMT3_MAIZE DNA (cytosine-5)-methyltransferase 3 OS=Zea mays GN=DMT105 PE=2
SV=1
Length = 915
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/503 (45%), Positives = 293/503 (58%), Gaps = 73/503 (14%)
Query: 29 DDDEDKIVSNVECHYAQARIGECIFDLGDCAYIK-GEGTQKHIGKILEFFKTTDGEEYFR 87
+DDE K CHY A++ ++ LGD Y+K GE +IG+I EFF+ TD YF
Sbjct: 170 EDDELK----ARCHYRSAKVDNIVYCLGDDVYVKAGENEADYIGRITEFFEGTDRCHYFT 225
Query: 88 VQWFYRAEDTVMKEAADF------HDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLK 141
+WF+RAEDTV+ HD +R+F S NDN +DCIISKV + + P + K
Sbjct: 226 CRWFFRAEDTVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPK 285
Query: 142 SNS--IPSSDFYFDMEYCVEYSTFRTLLTGKIHDLSLPSCTETVPTTATSTFFENMPNHG 199
+ + I D Y+DM Y V YSTF I + S +ET ++ ++
Sbjct: 286 AKAQLIEHCDLYYDMSYSVAYSTF-----ANISSENGQSGSETASGISSDDAGLETSSNM 340
Query: 200 PHKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRN 259
P + LLDLYSGCGGMSTGLCLGA LS L TRWA+D + AC+SLK NHP+ +VRN
Sbjct: 341 PERT-ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHPQTEVRN 399
Query: 260 EAAEDFLELVKEWQKLCKRFAVNIVERENKQRSMSQRVTRNSVNSPSITRNSVDSPKVTG 319
E A++FL L+KEW LC ++ + Q V N S
Sbjct: 400 EKADEFLALLKEWAVLC-------------EKYVHQDVDSNLAGS--------------- 431
Query: 320 NSVDSPRVTRSSVNSPRVTRNSVNSPRDVD-IPPGEYEVARIVDICYGDPNESGKRGLNF 378
D D + E+ V +++ I Y K+G+ F
Sbjct: 432 -----------------------EDQEDADTLDKDEFVVQKLIGIRYDGTGR--KKGVYF 466
Query: 379 KVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGFKSKILPLPGDVDVICGGPPCQGISG 438
KV W+GY ED+WEPI+ L +CP +I+EFV+ G K KILPLPGDVDVICGGPPCQGISG
Sbjct: 467 KVQWEGYGPEEDTWEPIDNLSDCPLKIREFVQEGRKRKILPLPGDVDVICGGPPCQGISG 526
Query: 439 YNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSRLVH 498
+NRFRN D PL DE+N+Q+V FMDIV +LKPKYVLMENVVDILKF LG+YALS LV
Sbjct: 527 FNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVA 586
Query: 499 MKYQARFGIIAAGCYGLPQFRLR 521
MKYQAR G++ AGCYGLPQFR+R
Sbjct: 587 MKYQARLGMMVAGCYGLPQFRMR 609
>sp|O49139|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis
thaliana GN=CMT1 PE=5 SV=2
Length = 791
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/501 (42%), Positives = 308/501 (61%), Gaps = 54/501 (10%)
Query: 25 GAYSDDDEDKIVSNVECHYAQARIGECIFDLGDCAYIKG-EGTQKHIGKILEFFKTTDGE 83
G +D+E I+ +CH+ +A + + +L D Y+ G G K I K++E F+ DG
Sbjct: 55 GGKKEDEE--IIKQAKCHFDKALVDGVLINLNDDVYVTGLPGKLKFIAKVIELFEADDGV 112
Query: 84 EYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIP-PKIG--L 140
Y R +W+YR EDT+++ + KR+F S NDNP+ CI SKV +A++P PKI +
Sbjct: 113 PYCRFRWYYRPEDTLIERFSHLVQPKRVFLSNDENDNPLTCIWSKVNIAKVPLPKITSRI 172
Query: 141 KSNSIPSSDFYFDMEYCVEYSTFRTLLTGKIHDLSLPSCTETVPTTATSTFFENMPNHGP 200
+ IP D+Y+DM+Y V Y F + G + ++ + + FEN+
Sbjct: 173 EQRVIPPCDYYYDMKYEVPYLNFTSADDGSDA-------SSSLSSDSALNCFENL----- 220
Query: 201 HKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNE 260
HK E LLDLYSGCG MSTG C+GA +S L+T+W++D +K AC+SLKLNHPE +VRNE
Sbjct: 221 HKDEKFLLDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPETEVRNE 280
Query: 261 AAEDFLELVKEWQKLCKRFAVNIVERENKQRSMSQRVTRNSVNSPSITRNSVDSPKVTGN 320
AAEDFL L+KEW++LC++F+ +V S+S+ + I S +
Sbjct: 281 AAEDFLALLKEWKRLCEKFS--LVSSTEPVESISELEDEEVEENDDIDEASTGA------ 332
Query: 321 SVDSPRVTRSSVNSPRVTRNSVNSPRDVDIPPGEYEVARIVDICYGDPNESGKRGLNFKV 380
++ PGE+EV + + I +GDP +G++ L V
Sbjct: 333 ----------------------------ELEPGEFEVEKFLGIMFGDPQGTGEKTLQLMV 364
Query: 381 HWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGFKSKILPLPGDVDVICGGPPCQGISGYN 440
WKGY++S D+WEP GL NC E++KE+V +GFKS +LPLPG V +CGGPPCQGISGYN
Sbjct: 365 RWKGYNSSYDTWEPYSGLGNCKEKLKEYVIDGFKSHLLPLPGTVYTVCGGPPCQGISGYN 424
Query: 441 RFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSRLVHMK 500
R+RN ++PL+D++N+Q+++F+DI++FLKP YVLMENVVD+L+F K L R+A++ V M
Sbjct: 425 RYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENVVDLLRFSKGFLARHAVASFVAMN 484
Query: 501 YQARFGIIAAGCYGLPQFRLR 521
YQ R G++AAG YGLPQ R R
Sbjct: 485 YQTRLGMMAAGSYGLPQLRNR 505
>sp|Q9ARI6|CMT2_MAIZE DNA (cytosine-5)-methyltransferase 2 OS=Zea mays GN=ZMET5 PE=2 SV=1
Length = 915
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 230/503 (45%), Positives = 292/503 (58%), Gaps = 73/503 (14%)
Query: 29 DDDEDKIVSNVECHYAQARIGECIFDLGDCAYIK-GEGTQKHIGKILEFFKTTDGEEYFR 87
+DDE K CHY A++ ++ LGD Y+K GE +IG+I EFF+ TD YF
Sbjct: 170 EDDELK----ARCHYRSAKVDNIVYCLGDDVYVKAGENEADYIGRITEFFEGTDRCHYFT 225
Query: 88 VQWFYRAEDTVMKEAADF------HDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLK 141
+WF+RAEDTV+ HD +R+F S NDN +DCIISKV + + P + K
Sbjct: 226 CRWFFRAEDTVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPK 285
Query: 142 SNS--IPSSDFYFDMEYCVEYSTFRTLLTGKIHDLSLPSCTETVPTTATSTFFENMPNHG 199
+ + I D Y+DM Y V YSTF I + S +ET ++ ++
Sbjct: 286 AKAQLIEHCDLYYDMSYSVAYSTF-----ANISSENGQSGSETASGISSDDAGLETSSNM 340
Query: 200 PHKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRN 259
P + LLDLYSGCGGMSTGLCLGA LS L TRWA+D + AC+SLK NHP+ +VRN
Sbjct: 341 PERT-ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHPQTEVRN 399
Query: 260 EAAEDFLELVKEWQKLCKRFAVNIVERENKQRSMSQRVTRNSVNSPSITRNSVDSPKVTG 319
E A++FL L+KEW LC ++ + Q V N S
Sbjct: 400 EKADEFLALLKEWAVLC-------------EKYVHQDVDSNLAGS--------------- 431
Query: 320 NSVDSPRVTRSSVNSPRVTRNSVNSPRDVD-IPPGEYEVARIVDICYGDPNESGKRGLNF 378
D D + E+ V +++ I Y K+G+ F
Sbjct: 432 -----------------------EDQEDADTLDKDEFVVQKLIGIRYDGTGR--KKGVYF 466
Query: 379 KVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGFKSKILPLPGDVDVICGGPPCQGISG 438
KV W+ Y ED+WEPI+ L +CP +I+EFV+ G K KILPLPGDVDVICGGPPCQGISG
Sbjct: 467 KVQWEEYGPEEDTWEPIDNLSDCPLKIREFVQEGRKRKILPLPGDVDVICGGPPCQGISG 526
Query: 439 YNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSRLVH 498
+NRFRN D PL DE+N+Q+V FMDIV +LKPKYVLMENVVDILKF LG+YALS LV
Sbjct: 527 FNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVA 586
Query: 499 MKYQARFGIIAAGCYGLPQFRLR 521
MKYQAR G++ AGCYGLPQFR+R
Sbjct: 587 MKYQARLGMMVAGCYGLPQFRMR 609
>sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana
GN=CMT3 PE=1 SV=2
Length = 839
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/506 (44%), Positives = 302/506 (59%), Gaps = 53/506 (10%)
Query: 28 SDDDEDKIVSNVECHYAQARIGE-CIFDLGDCAYIK-GEGTQKHIGKILEFFKTTDGEEY 85
+ DDE + CHY +A + E I++L D AY++ GEG I KI+E F+ +G+ Y
Sbjct: 84 TKDDEKVEIIRARCHYRRAIVDERQIYELNDDAYVQSGEGKDPFICKIIEMFEGANGKLY 143
Query: 86 FRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSI 145
F +WFYR DTVMKE +KR+F+S + + N + + K+ + IP K +I
Sbjct: 144 FTARWFYRPSDTVMKEFEILIKKKRVFFSEIQDTNELGLLEKKLNILMIPLNENTKE-TI 202
Query: 146 PSS---DFYFDMEYCVEYSTFRTLLTGKIHDLSLPSCTETVP-----TTATSTFFENMPN 197
P++ DF+ DM Y + Y TF + + +S S + A S E
Sbjct: 203 PATENCDFFCDMNYFLPYDTFEAIQQETMMAISESSTISSDTDIREGAAAISEIGECSQE 262
Query: 198 HGPHKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQV 257
HK + LLDLYSGCG MSTGLC+GA+LS NLVT+WA+D + AC+SL+ NHPE V
Sbjct: 263 TEGHK-KATLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPETNV 321
Query: 258 RNEAAEDFLELVKEWQKLCKRFAVNIVERENKQRSMSQRVTRNSVNSPSITRNSVDSPKV 317
RN AEDFL L+KEW+KLC F++ NSP NS + +
Sbjct: 322 RNMTAEDFLFLLKEWEKLCIHFSLR--------------------NSP----NSEEYANL 357
Query: 318 TG--NSVDSPRVTRSSVNSPRVTRNSVNSPRDVDIPPGEYEVARIVDICYGDPNESGKRG 375
G N D+ V+ S N D ++ + V +IV I +G P + KRG
Sbjct: 358 HGLNNVEDNEDVSEESENE-----------DDGEV----FTVDKIVGISFGVPKKLLKRG 402
Query: 376 LNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGFKSKILPLPGDVDVICGGPPCQG 435
L KV W Y S D+WEPIEGL NC +I+EFV+ G+KS ILPLPG VDV+CGGPPCQG
Sbjct: 403 LYLKVRWLNYDDSHDTWEPIEGLSNCRGKIEEFVKLGYKSGILPLPGGVDVVCGGPPCQG 462
Query: 436 ISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSR 495
ISG+NRFRN+ PL+D++N+Q++++M+IVE+LKPK+VLMENVVD+LK K L R+A+ R
Sbjct: 463 ISGHNRFRNLLDPLEDQKNKQLLVYMNIVEYLKPKFVLMENVVDMLKMAKGYLARFAVGR 522
Query: 496 LVHMKYQARFGIIAAGCYGLPQFRLR 521
L+ M YQ R G++AAG YGL QFRLR
Sbjct: 523 LLQMNYQVRNGMMAAGAYGLAQFRLR 548
>sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica
GN=MET1A PE=2 SV=1
Length = 1527
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 414 KSKILPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVL 473
K K LP+PG+V+ I GGPPCQG SG NRF SP + I+ F+ E+ +P++ L
Sbjct: 1178 KIKNLPVPGEVEFINGGPPCQGFSGMNRFNQ--SPWSKVQCEMILAFLSFAEYFRPRFFL 1235
Query: 474 MENVVDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ENV + + F+K R L+ L+ M YQ RFGI+ AG YG+ Q R R
Sbjct: 1236 LENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVAQSRKR 1283
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 27/184 (14%)
Query: 87 RVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIP 146
+V+ FYR +D + A D + ++YS D I V++ + ++ LK + +P
Sbjct: 970 KVRRFYRPDD-ISSTKAYSSDIREVYYSE-------DIISVPVVMIEGKCEVRLKDD-LP 1020
Query: 147 SSDFYFDME--YCVEY--STFRTLLTGKIHDLSLPSCTETVPTTATSTFFE--------- 193
+SD +E +C EY L ++ L + T VP + + +
Sbjct: 1021 NSDLPAVVEHVFCCEYLYDPANGALKQLPPNVRLVTLTRKVPASKKNKGKQICDIELGGS 1080
Query: 194 NMPNHGPHKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP 253
+ P G + LA LD+++GCGG+S GL LS +T+WA++ ++ A ++ NHP
Sbjct: 1081 DKPKDGQSENCLATLDIFAGCGGLSEGLQRSG-LS----LTKWAIEYEEPAGDAFGENHP 1135
Query: 254 EAQV 257
EA V
Sbjct: 1136 EAAV 1139
>sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica
GN=MET1B PE=2 SV=1
Length = 1529
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 418 LPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENV 477
LP+PG+V+ I GGPPCQG SG NRF SP + I+ F+ E+ +P++ L+ENV
Sbjct: 1183 LPVPGEVEFINGGPPCQGFSGMNRFNQ--SPWSKVQCEMILAFLSFAEYFRPRFFLLENV 1240
Query: 478 VDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ + F+K R ++ L+ M YQ RFGI+ AG +G+ Q R R
Sbjct: 1241 RNFVSFNKGQTFRLTVASLLEMGYQVRFGILEAGTFGVAQSRKR 1284
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 28/184 (15%)
Query: 88 VQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPS 147
V+ FYR +D + A D + ++YS + PVD I K ++ KI + ++ +P
Sbjct: 971 VRRFYRPDD-ISSAKAYVSDIREVYYSENIVKVPVDMIEGK---CEVKKKIDISNSDVP- 1025
Query: 148 SDFYFDMEYCVEYSTFRTLLTGKIHDLSLPSCTETVPTTATSTFFENMPNH--------- 198
+ E+ E+ F TG + L +V AT +N
Sbjct: 1026 --VMVEHEFFCEH--FYDPATGALKQLPPNVKLMSVQQKATGALKKNKGKQICESDQVDS 1081
Query: 199 -----GPHKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP 253
+ LA LD+++GCGG+S GL A +S T+WA++ ++ A E+ NHP
Sbjct: 1082 DKCTKVSKENRLATLDIFAGCGGLSEGL-QQAGVS----FTKWAIEYEEPAGEAFTKNHP 1136
Query: 254 EAQV 257
EA V
Sbjct: 1137 EAAV 1140
>sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1
PE=1 SV=1
Length = 1534
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 418 LPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENV 477
LPLPG VD I GGPPCQG SG NRF S + I+ F+ ++ +P+Y L+ENV
Sbjct: 1183 LPLPGQVDFINGGPPCQGFSGMNRFNQ--SSWSKVQCEMILAFLSFADYFRPRYFLLENV 1240
Query: 478 VDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ F+K + L+ L+ M YQ RFGI+ AG YG+ Q R R
Sbjct: 1241 RTFVSFNKGQTFQLTLASLLEMGYQVRFGILEAGAYGVSQSRKR 1284
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 12/177 (6%)
Query: 87 RVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIP 146
+V+ FYR ED V E A D + L++S P + K V + + I
Sbjct: 970 KVRRFYRPED-VSAEKAYASDIQELYFSQDTVVLPPGALEGKCEVRKKSDMPLSREYPIS 1028
Query: 147 SSDFYFDMEYCVEYSTFRTL---LTGKIHDLSLPSCTETVPTTATSTFFEN---MPNHGP 200
F+ D+ + + + L + K + + + E+ P P
Sbjct: 1029 DHIFFCDLFFDTSKGSLKQLPANMKPKFSTIKDDTLLRKKKGKGVESEIESEIVKPVEPP 1088
Query: 201 HKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQV 257
+ LA LD+++GCGG+S GL K ++ +WA++ ++ A ++ K NHPE+ V
Sbjct: 1089 KEIRLATLDIFAGCGGLSHGL---KKAGVSD--AKWAIEYEEPAGQAFKQNHPESTV 1140
>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
GN=DNMT PE=2 SV=1
Length = 1612
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 418 LPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENV 477
LP GDV+++CGGPPCQG SG NRF + + +N I ++ ++ +P++ L+ENV
Sbjct: 1203 LPQKGDVELLCGGPPCQGFSGMNRFNSRE--YSKFKNSLISSYLSYCDYYRPRFFLLENV 1260
Query: 478 VDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ + + K + + AL L+ M YQ FGI+ AG YG+PQ R R
Sbjct: 1261 RNFVSYKKNMVLKLALRCLIRMGYQCTFGILQAGQYGVPQTRRR 1304
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 25/234 (10%)
Query: 60 YIKGEGTQK----HIGKILEFFKT-TDGEEYFRVQWFYRAEDTVMKEAADFH-DRKRLFY 113
Y+KG + IGKI+ + T ++ RV YR EDT A + D L++
Sbjct: 974 YVKGSNLECPEPFRIGKIISIYTTKSNSTVRLRVNKMYRPEDTHKGRTAAYQADLNVLYW 1033
Query: 114 STVMNDNPVDCIISK--VIVAQIPPKIGLKSNSIPSS---DFYFDMEY-----CVEYSTF 163
S ++ + K V+ A+ + + ++ + FYF Y C E
Sbjct: 1034 SEEEAVTELEVVQGKCSVVCAE---DLNVSTDEYSAGGPHKFYFREAYDSERKCFEDPPS 1090
Query: 164 RTLLTGKIHDLSLPSCTETVPTTATSTFFENMPNHGPHKAELALLDLYSGCGGMSTGLCL 223
++ T + A E P +L LD+++GCGG+S G
Sbjct: 1091 KSRSTRMKGKGKGKGKGKAKGKIAVEKEEEKESTETPFN-KLKCLDVFAGCGGLSEGFHQ 1149
Query: 224 GAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELVKEWQKLCK 277
+ WA++ ++ A ++ +LN+P + V ++ + L LV + +K +
Sbjct: 1150 AGICESS-----WAIEKEEPAAQAYRLNNPGSTVFSDDCNELLRLVMQGEKTSR 1198
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 31 DEDKIVSNVECHYAQARIGECIFDLGDCAYIKGEGTQK--HIGKILEFFKTTDGEEYFRV 88
DE V+ +Y A + + ++GDC I + K + +++ ++ + GE F
Sbjct: 723 DEPTEVTEERAYYKAAMLDDEKIEIGDCVLIHPDDPTKPLFMARVIYMWQESQGEMMFHA 782
Query: 89 QWFYRAEDTVMKEAAD 104
QWF +TV+ E +D
Sbjct: 783 QWFVYGSETVLGETSD 798
>sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1
Length = 1611
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 414 KSKILPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVL 473
+ + LP GDV+++CGGPPCQG SG NRF + +N +V F+ ++ +P+Y L
Sbjct: 1204 RGQKLPQKGDVEMLCGGPPCQGFSGMNRFNS--RTYSKFKNSLVVSFLSYCDYYRPRYFL 1261
Query: 474 MENVVDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ENV + + F ++ + + L LV M YQ FG++ AG YG+ Q R R
Sbjct: 1262 LENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRR 1309
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 89/233 (38%), Gaps = 36/233 (15%)
Query: 60 YIKGEGTQK----HIGKILEFF--KTTDGEE-----YFRVQWFYRAEDTVMKEAADFHDR 108
YIKG IG+I E F K ++G RV FYR E+T A +H
Sbjct: 976 YIKGSNLDAPEPYRIGRIKEIFCSKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHAD 1035
Query: 109 KRLFY----STVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDFYFDMEYCVEYSTFR 164
L Y V++ V + +P + S P FYF Y + +F
Sbjct: 1036 INLLYWSDEEAVVDFKAVQGRCTVEYGEDLPQCLQDFSAGGPDR-FYFLEAYNAKSKSFE 1094
Query: 165 -----TLLTGKIHDLSLPSCTETVPTTATSTFFEN---MPNHGPHKAELALLDLYSGCGG 216
TG T T + E +P +L LD++SGCGG
Sbjct: 1095 DPPNHARSTGNKGKGKGKGKNRTKSQTCEPSELETEIKLP-------KLRTLDVFSGCGG 1147
Query: 217 MSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELV 269
+S G A +S T WA++ A ++ +LN+P + V E L+LV
Sbjct: 1148 LSEGF-HQAGIS----ETLWAIEMWDPAAQAFRLNNPGSTVFTEDCNVLLKLV 1195
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 42 HYAQARIGECIFDLGDCAYIKGEGTQK--HIGKILEFFKTTDGEEYFRVQWFYRAEDTVM 99
+Y + I ++GDC + + + K ++ ++ ++ + + F WF DTV+
Sbjct: 743 YYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVL 802
Query: 100 KEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPP------KIGLKSNSIPSSD---- 149
+D + LF D + I SKV V P + G+ ++ S D
Sbjct: 803 GATSDPLE---LFLVDECEDMQLSYIHSKVQVIYKAPSENWAMEGGVDPEALMSEDDGKT 859
Query: 150 FYFDMEYCVEYSTFRT 165
+++ + Y +Y+ F +
Sbjct: 860 YFYQLWYDQDYARFES 875
>sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1
SV=1
Length = 1537
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 418 LPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENV 477
LP GDV+++CGGPPCQG SG NRF + +N +V F+ ++ +P++ L+ENV
Sbjct: 1126 LPQKGDVEMLCGGPPCQGFSGMNRFNS--RTYSKFKNSLVVSFLSYCDYYRPRFFLLENV 1183
Query: 478 VDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ + F ++ + + L LV M YQ FG++ AG YG+ Q R R
Sbjct: 1184 RNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRR 1227
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 81/234 (34%), Gaps = 24/234 (10%)
Query: 60 YIKGEGTQK----HIGKILEFF-------KTTDGEEYFRVQWFYRAEDTVMKEAADFHDR 108
YIKG +G+I E F K + + R+ FYR E+T A +H
Sbjct: 890 YIKGSNLDAPDPYRVGRIKEIFCHIRTNGKPNEADIKLRIWKFYRPENTHKSMKATYHAD 949
Query: 109 KRLFYSTVMNDNPVDCIISK--VIVAQIPPKIGLKSNSIPSSD-FYFDMEYCVEYSTFRT 165
L Y + C + +V ++ S D FYF Y + +F
Sbjct: 950 INLLYWSDEETTVDFCAVQGRCTVVYGEDLTESIQDYSAGGLDRFYFLEAYNAKTKSFED 1009
Query: 166 LLTGKIHDLSLPSCTETVPTTATSTFFENMPNHGPHKAELAL-----LDLYSGCGGMSTG 220
+ P EL L LD++SGCGG+S G
Sbjct: 1010 PPNHARSSGNKGKGKGKGKGKGKGKSSTTCEQSEPEPTELKLPKLRTLDVFSGCGGLSEG 1069
Query: 221 LCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELVKEWQK 274
T WA++ + A ++ +LN+P V E L+LV +K
Sbjct: 1070 FHQAGVSE-----TLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLLKLVMSGEK 1118
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 43 YAQARIGECIFDLGDCAYIKGEGTQK--HIGKILEFFKTTDGEEYFRVQWFYRAEDTVMK 100
Y + I ++GDC + + K ++ ++ ++ + G+ F WF DTV+
Sbjct: 659 YQRVCIDSETLEVGDCVSVSPDDPTKPLYLARVTAMWEDSSGQ-MFHAHWFCPGSDTVLG 717
Query: 101 EAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPK----------IGLKSNSIPSSDF 150
+D + LF D + I KV V PP + +K +
Sbjct: 718 ATSDPLE---LFLVDECEDMQLSYIHGKVNVIYKPPSENWAMEGGLDMEIKMVEDDGRTY 774
Query: 151 YFDMEYCVEYSTFRT 165
++ M Y EY+ F T
Sbjct: 775 FYQMWYDQEYARFET 789
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1
SV=2
Length = 1616
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 414 KSKILPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVL 473
+ + LP GDV+++CGGPPCQG SG NRF + +N +V F+ ++ +P++ L
Sbjct: 1207 RGQRLPQKGDVEMLCGGPPCQGFSGMNRFNS--RTYSKFKNSLVVSFLSYCDYYRPRFFL 1264
Query: 474 MENVVDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ENV + + F ++ + + L LV M YQ FG++ AG YG+ Q R R
Sbjct: 1265 LENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRR 1312
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 88/226 (38%), Gaps = 22/226 (9%)
Query: 60 YIKGEGTQK----HIGKILEFF--KTTDGEE-----YFRVQWFYRAEDTVMKEAADFHDR 108
YIKG IG+I E F K ++G RV FYR E+T A +H
Sbjct: 979 YIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHAD 1038
Query: 109 KRLFY----STVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDFYFDMEYCVEYSTFR 164
L Y V++ V + +P + + S P+ FYF Y + +F
Sbjct: 1039 INLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNR-FYFLEAYNAKSKSFE 1097
Query: 165 TLLTGKIHDLSLPSCTETVPTTATSTFFE-NMPNHGPHKAELALLDLYSGCGGMSTGLCL 223
+ S E + P +L LD++SGCGG+S G
Sbjct: 1098 DPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPKLRTLDVFSGCGGLSEGF-H 1156
Query: 224 GAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELV 269
A +S T WA++ A ++ +LN+P + V E L+LV
Sbjct: 1157 QAGIS----DTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLV 1198
Score = 32.3 bits (72), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 42 HYAQARIGECIFDLGDCAYIKGEGTQK--HIGKILEFFKTTDGEEYFRVQWFYRAEDTVM 99
+Y + I ++GDC + + + K ++ ++ ++ + + F WF DTV+
Sbjct: 746 YYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVL 805
Query: 100 KEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPP------KIGLKSNSIPSSD---- 149
+D + LF D + I SKV V P + G+ S+ D
Sbjct: 806 GATSDPLE---LFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKT 862
Query: 150 FYFDMEYCVEYSTFRT 165
+++ + Y +Y+ F +
Sbjct: 863 YFYQLWYDQDYARFES 878
>sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1
PE=1 SV=2
Length = 1622
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 418 LPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENV 477
LP GDV+++CGGPPCQG SG NRF + +N +V F+ ++ +P++ L+ENV
Sbjct: 1216 LPQKGDVEMLCGGPPCQGFSGMNRFNS--RTYSKFKNSLVVSFLSYCDYYRPRFFLLENV 1273
Query: 478 VDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ + F ++ + + L LV M YQ FG++ AG YG+ Q R R
Sbjct: 1274 RNFVSFRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRR 1317
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAE 263
+L LD++SGCGG++ G A +S T WA++ + A ++ +LN+P V E
Sbjct: 1143 KLRTLDVFSGCGGLTEGF-HQAGIS----ETLWAIEMWEPAAQAFRLNNPGTTVFTEDCN 1197
Query: 264 DFLELV 269
L+LV
Sbjct: 1198 VLLKLV 1203
>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1
SV=5
Length = 1620
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 418 LPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENV 477
LP GDV+++CGGPPCQG SG NRF + +N +V F+ ++ +P++ L+ENV
Sbjct: 1214 LPQKGDVEMLCGGPPCQGFSGMNRFNS--RTYSKFKNSLVVSFLSYCDYYRPRFFLLENV 1271
Query: 478 VDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ + + ++ + + L LV M YQ FG++ AG YG+ Q R R
Sbjct: 1272 RNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRR 1315
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAE 263
+L LD++SGCGG+S G A +S T WA++ A ++ +LN+P V E
Sbjct: 1141 KLRTLDVFSGCGGLSEGF-HQAGIS----ETLWAIEMWDPAAQAFRLNNPGTTVFTEDCN 1195
Query: 264 DFLELV 269
L+LV
Sbjct: 1196 VLLKLV 1201
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 42 HYAQARIGECIFDLGDCAYIKGEGTQK--HIGKILEFFKTTDGEEYFRVQWFYRAEDTVM 99
+Y + I E + ++GDC + + + K ++ ++ ++ +G+ F WF DTV+
Sbjct: 749 YYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVL 808
Query: 100 KEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLK-------SNSIPSSD--- 149
+D + LF + + I SKV V P ++P ++
Sbjct: 809 GATSDPLE---LFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGK 865
Query: 150 -FYFDMEYCVEYSTFRT 165
++F + Y EY+ F +
Sbjct: 866 TYFFQLWYNQEYARFES 882
>sp|P94147|MTA1_RUEGE Modification methylase AgeI OS=Ruegeria gelatinovora GN=ageIM PE=3
SV=1
Length = 429
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 421 PGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDI 480
PG VDV+ GGPPCQG S Y + R+ DD RN+ V + VE +PK L+ENVV +
Sbjct: 68 PGQVDVVMGGPPCQGFSTYGQRRD-----DDARNQLYVPYFGFVEEFRPKAFLIENVVGL 122
Query: 481 LKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
L ++ ++R + Y A + A YG+PQ R R
Sbjct: 123 LSMSGGAVLADMVARAEALGYAADVVTLDACEYGVPQHRRR 163
>sp|P25282|MTG1_HAEGA Modification methylase HgaIA OS=Haemophilus gallinarum GN=hgaIAM
PE=3 SV=2
Length = 357
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 418 LPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENV 477
+ L VD + PPCQG+S + R+V + +D RN I+ + +++ LKP Y+L+ENV
Sbjct: 68 IALTNQVDFLIASPPCQGMSVAGKNRDVSNMANDNRNYLIMYVIAMIKKLKPAYILIENV 127
Query: 478 VDILKFD-----KASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+LK + K + + L +Y F I+ A YG PQ R R
Sbjct: 128 PFLLKLELYIDNKLTPIKNILEDEFGSEYHIHFDILDAADYGTPQRRKR 176
>sp|P50192|MTHA_HAEPH Modification methylase HphIA OS=Haemophilus parahaemolyticus
GN=hphIAM PE=3 SV=1
Length = 372
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 424 VDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKF 483
VDV+ GGPPCQG S + + DD RN F+ +V+ +PK+ +MENV +
Sbjct: 113 VDVVIGGPPCQGFSMAGKIGRTFA--DDPRNHLFKEFVRVVKLTQPKFFVMENVARLFTH 170
Query: 484 DKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ + + Y+ + ++ A +G+PQ R R
Sbjct: 171 NSGKTRAEITEQFERLGYKVKCKVLNAADFGVPQLRSR 208
>sp|O52702|MTA1_ACEPA Modification methylase ApaLI OS=Acetobacter pasteurianus GN=apaLIM
PE=3 SV=1
Length = 429
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 426 VICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDK 485
V+ GGPPCQG S RN D RN I +++IVE L P++++ ENV +L
Sbjct: 74 VVIGGPPCQGFSTAGP-RN----FADPRNLLIFNYLNIVERLSPRWLIFENVEGLL---- 124
Query: 486 ASLGRYALSRLVH----MKYQARFGIIAAGCYGLPQFRLR 521
S G L+RLV M Y R + YG+PQ R R
Sbjct: 125 TSGGGRDLARLVREFVDMGYSVRLQKVNLAAYGVPQTRKR 164
>sp|P05302|MTD1_DESNO Modification methylase DdeI OS=Desulfomicrobium norvegicum (strain
DSM 1741 / NCIMB 8310) GN=ddeIM PE=3 SV=1
Length = 415
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 423 DVDVICGGPPCQGIS-GYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDIL 481
DVD I GGPPCQG S NR + D RN V F+ V+F PK+ +MENV+ IL
Sbjct: 66 DVDGIIGGPPCQGFSLSGNRDQK------DPRNSLFVDFVRFVKFFSPKFFVMENVLGIL 119
Query: 482 KFDKAS---LGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
S + ++ Y+ I+ A YG+PQ R R
Sbjct: 120 SMKTKSRQYVKDIIAEEFSNVGYKVCVIILNACDYGVPQSRQR 162
>sp|P16668|MTS3_STAAU Modification methylase Sau3AI OS=Staphylococcus aureus GN=sau3AIM
PE=3 SV=1
Length = 412
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 370 ESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGFKS-KILPLPGD----- 423
E+ K G+ F + W + WEP +++ + + +NG S K + D
Sbjct: 21 ENTKNGI-FDITWA------NQWEPSRKIQHAFDCYSKRFKNGIHSNKDIAQVSDEEMAN 73
Query: 424 --VDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLK---PKYVLMENVV 478
D+I GG PCQ Y+ R+++ L + ++ V+F I+ +++ PKY+L+ENV
Sbjct: 74 TEADMIVGGFPCQD---YSVARSLNGELGIQ-GKKGVLFWQIIRYIQNTFPKYLLLENVD 129
Query: 479 DILKFDKASLGR---YALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+LK + GR LS L + Y + +I A YG Q R R
Sbjct: 130 RLLKSPSSQRGRDFAVMLSTLNELGYNVEWRVINAADYGNAQRRRR 175
>sp|P34882|MTAA_SYNP2 Modification methylase AquI subunit alpha OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=aquIMA PE=3
SV=1
Length = 248
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 371 SGKRGLNFKVHWKGYSTS---EDSWEPIEGLR-NCPER--IKEFVRNGFKSKILPL---- 420
SG G++ H G+ST+ E LR N P+ I+ + + IL
Sbjct: 10 SGAGGMDIGFHAAGFSTAVAVEQDPSCCNTLRLNMPDTPVIEGDITSITTQVILEAAKVN 69
Query: 421 PGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDI 480
P ++D++ GGPPCQ S + +DD R ++ F+ +V PK +MENV +
Sbjct: 70 PLEIDLVIGGPPCQSFSLAGKRMG----MDDPRGMLVLEFLRVVREALPKCFVMENVKGM 125
Query: 481 LKFDKASLGRYALSRLVH--------MKYQARFGIIAAGCYGLPQFRLR 521
+ + K ++ KY + ++ A +G+PQFR R
Sbjct: 126 INWSKGKALEAIMTEASQPIKYAGKEYKYAVSYHVLNAADFGVPQFRER 174
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQV 257
E L+ L+SG GGM G T A++ D S C +L+LN P+ V
Sbjct: 2 EKKLISLFSGAGGMDIGF------HAAGFSTAVAVEQDPSCCNTLRLNMPDTPV 49
>sp|P52311|MTX2_XANOR Modification methylase XorII OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=xorIIM PE=3 SV=2
Length = 424
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 423 DVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILK 482
D+D++ GG PCQG S + LDD RN+ + ++ +V LKPKY + ENV +
Sbjct: 73 DIDIVIGGAPCQGFSLIGK-----RALDDSRNQLVHHYVRVVMELKPKYFVFENVKGLTV 127
Query: 483 FDKASLGRYALSRLVHMKYQ--ARFGIIAAGCYGLPQFRLR 521
+ + + Y + ++ A YG+PQ R R
Sbjct: 128 GKHRQFLKEVIEAFQNGGYDVVTDYRVLNAADYGVPQDRRR 168
>sp|P34877|MTSA_LACLC Modification methylase ScrFIA OS=Lactococcus lactis subsp. cremoris
GN=scrFIAM PE=3 SV=1
Length = 389
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 423 DVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILK 482
D D++ GG PCQ S + DD R I++ +PK L+ENV ++
Sbjct: 139 DHDILVGGFPCQAFSQAGK----KLGFDDTRGTLFFEIARIIKEKRPKAFLLENVKNLKT 194
Query: 483 FDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
DK + L+ L + Y+ + A +GLPQ R R
Sbjct: 195 HDKGRTFKTILNTLEELDYEVHTALFKARDFGLPQNRER 233
>sp|P09795|MTS1_SALIN Modification methylase SinI OS=Salmonella infantis GN=sinIM PE=3
SV=1
Length = 461
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 371 SGKRGLNFKVHWKGYST---SE-DSWEPIEGLRNCPER-IKEFVRNGFKSKILPLPG--- 422
SG GL+ + G+ T SE D L N P + +R+ IL L G
Sbjct: 82 SGAMGLDLGIEQAGFETLLASEIDKAARDTILSNRPNMALIGDIRDYTTEDILKLAGVSS 141
Query: 423 --DVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDI 480
++D+I GGPPCQ S + L+DER + ++D+ ++PKY+++ENV +
Sbjct: 142 GNEIDLIMGGPPCQAFSTAGKRLG----LEDERGNVFIKYLDVALDIRPKYIVIENVRGL 197
Query: 481 -------------------LKFDKASLG--RYALSRLVHMKYQARFGIIAAGCYGLPQFR 519
LK ++ G Y + + Y F + + +G+PQ R
Sbjct: 198 LSAPMKHRPHNERGEGLPPLKSEEQPGGVLHYIIRIIKSAGYSVSFNLYNSANFGVPQIR 257
Query: 520 LR 521
R
Sbjct: 258 ER 259
>sp|Q58600|MT52_METJA Probable modification methylase MJ1200 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1200 PE=3 SV=1
Length = 366
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 424 VDVICGGPPCQGISGYNRFRN---VDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDI 480
VDVI GGPPC+G +G N R D DE R ++ ++ IV L+PK +MENV I
Sbjct: 124 VDVIIGGPPCEGYTGANPKREKNPYDRLYKDETGRLVLEYIRIVGDLQPKIFVMENVPGI 183
Query: 481 LKFDKASLGRYALSRLVHMKYQ-ARFGIIAAGCYGLPQFRLR 521
+ A + + + Y+ F + A YG P R R
Sbjct: 184 KEVRGAIIKEFR-----EIGYEDVYFNTLRAEDYGNPSVRRR 220
>sp|G3V8T1|MPP8_RAT M-phase phosphoprotein 8 OS=Rattus norvegicus GN=Mphosph8 PE=2 SV=1
Length = 851
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 355 YEVARIVDI-CYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGF 413
+EV RI+D+ C G N +KV WKGY++ +D+WEP L +C E + EF +
Sbjct: 59 FEVERILDMKCEGGKN-------LYKVRWKGYTSDDDTWEPEVHLEDCKEVLLEFRKKVA 111
Query: 414 KSKILPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDE 452
++K + D+ Q +S N DS +D +
Sbjct: 112 ENKAKAVRKDI---------QKLSLNNDIFEADSDIDQQ 141
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 41 CHY-AQARIGECIFDLGDCAYIKGEG-TQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTV 98
CHY Q R + +GDC +IK G + +G+I + + DG YF F E+T
Sbjct: 1145 CHYFEQLRYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVW-VRDGAAYFYGPIFIHPEETE 1203
Query: 99 MKEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDF 150
+ F+ +K +F S + P+ CI+ K V + + IP +D
Sbjct: 1204 HEPTKMFY-KKEVFLSNLEETCPMSCILGKCAVLSFKDFLSCRPTEIPENDI 1254
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 20 LNFLHGAYSDDDEDKIVSNVECHYAQARIGECIFDLGDCAYIK--GEGTQKHIGKILEFF 77
L+ LH YS D C + + ++ +GD Y++ Q HI I +
Sbjct: 940 LSGLHRTYSQD----------CSFKNS-----MYHVGDYVYVEPAEANLQPHIVCIERLW 984
Query: 78 KTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISKVIV 131
+ + GE++ WFYR +T F + K +F S N PV I+ K +V
Sbjct: 985 EDSAGEKWLYGCWFYRPNETFHLATRKFLE-KEVFKSDYYNKVPVSKILGKCVV 1037
>sp|Q3TYA6|MPP8_MOUSE M-phase phosphoprotein 8 OS=Mus musculus GN=Mphosph8 PE=1 SV=1
Length = 858
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 355 YEVARIVDI-CYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGF 413
+EV RI+D+ C G N +KV WKGY++ +D+WEP L +C E + EF +
Sbjct: 59 FEVERILDMKCEGGKN-------LYKVRWKGYTSEDDTWEPEVHLEDCKEVLLEFRKKLA 111
Query: 414 KSKILPLPGDV 424
++K + D+
Sbjct: 112 ENKAKAVRKDI 122
>sp|P17044|MTBF_BACIU Modification methylase BsuFI OS=Bacillus subtilis GN=hsdFM PE=3
SV=1
Length = 409
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 423 DVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLK---PKYVLMENVVD 479
D DV+ G PCQ F N+ R+ +IF D++ LK PK L+ENV
Sbjct: 160 DQDVLLAGFPCQP------FSNIGKREGFAHERRNIIF-DVLRILKKKQPKMFLLENVKG 212
Query: 480 ILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+L D + R L L + Y + ++ A +GLPQ R R
Sbjct: 213 LLTNDNGNTFRVILDNLKSLGYSVFYEVMDAQNFGLPQRRER 254
>sp|Q8N8U2|CDYL2_HUMAN Chromodomain Y-like protein 2 OS=Homo sapiens GN=CDYL2 PE=1 SV=2
Length = 506
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 355 YEVARIVDICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGF 413
YEV RIVD N+ GK + + WKGY ++ED+WEP L +C E I EF NG
Sbjct: 7 YEVERIVD---KRKNKKGK--WEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEF--NGL 58
>sp|P11408|MTM1_MORSP Modification methylase MspI OS=Moraxella sp. GN=mspIM PE=3 SV=1
Length = 418
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 425 DVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFD 484
D++C G PCQ S + + P +IV I+E K + +ENV ++ D
Sbjct: 166 DILCAGFPCQPFSHIGKREGFEHPTQGTMFHEIV---RIIETKKTPVLFLENVPGLINHD 222
Query: 485 KASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ + + L M Y+ ++ A +G+PQ R R
Sbjct: 223 DGNTLKVIIETLEDMGYKVHHTVLDASHFGIPQKRKR 259
>sp|P08455|MTP2_NEIGO Modification methylase NgoPII OS=Neisseria gonorrhoeae GN=ngoPIIM
PE=3 SV=2
Length = 330
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 420 LPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVD 479
P ++D I GGPPCQ S R + DD R + ++ I++ +PK+ L ENV
Sbjct: 60 FPEEIDGIIGGPPCQSWSEAGALRGI----DDARGQLFFDYIRILKSKQPKFFLAENVSG 115
Query: 480 ILKFDKASLGRYALSRLVHM----KYQARFGIIAAGCYGLPQFRLR 521
+L A+ A+ L+ M Y + A YG+ Q R R
Sbjct: 116 ML----ANRHNGAVQNLLKMFDGCGYDVTLTMANAKDYGVAQERKR 157
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 205 LALLDLYSGCGGMSTGL-CLGAKLSCTNLVTRWALDSDKSACESLKLNHP-----EAQVR 258
+ ++ L+SGCGG+ G G ++ N + DK+ + K NHP E +R
Sbjct: 1 MKIISLFSGCGGLDLGFEKAGFEIPAAN-------EYDKTIWATFKANHPKTHLIEGDIR 53
Query: 259 NEAAEDFLELV 269
EDF E +
Sbjct: 54 KIKEEDFPEEI 64
>sp|Q9Y232|CDYL1_HUMAN Chromodomain Y-like protein OS=Homo sapiens GN=CDYL PE=1 SV=2
Length = 598
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 341 SVNSPRDVDIPPGEYEVARIVDICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRN 400
SV+S + P +V RIVD N+ GK + V WKGY + +D+WEP + L N
Sbjct: 47 SVSSEQSGAQQPPALQVERIVD---KRKNKKGK--TEYLVRWKGYDSEDDTWEPEQHLVN 101
Query: 401 CPERIKEFVR 410
C E I +F R
Sbjct: 102 CEEYIHDFNR 111
>sp|O34680|YDIP_BACSU Probable BsuMI modification methylase subunit YdiP OS=Bacillus
subtilis (strain 168) GN=ydiP PE=2 SV=1
Length = 389
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 425 DVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVE----FLKPKYVLMENVVDI 480
D++ G PCQ +S +D R+ + +++E +P ++L+ENV +
Sbjct: 61 DLVAAGFPCQDLSQAGGKEGIDG----SRSGLVKKLFELIEKKEHANRPPWILIENVPYM 116
Query: 481 LKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
L+ ++ Y S L + Y + + A C+GLPQ R R
Sbjct: 117 LRLNRGKAMSYLTSVLSELGYTWAYRTVDARCFGLPQRRHR 157
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 41 CHY-AQARIGECIFDLGDCAYIKGEG-TQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTV 98
CHY Q + +GDC +IK G + +G+I + + DG YF F E+T
Sbjct: 1145 CHYFEQLHYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVW-VRDGAAYFYGPIFIHPEETE 1203
Query: 99 MKEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDF 150
+ F+ +K +F S + P+ CI+ K V + + IP +D
Sbjct: 1204 HEPTKMFY-KKEVFLSNLEETCPMTCILGKCAVLSFKDFLSCRPTEIPENDI 1254
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 20 LNFLHGAYSDDDEDKIVSNVECHYAQARIGECIFDLGDCAYIK--GEGTQKHIGKILEFF 77
L+ LH YS D C + + ++ +GD Y++ Q HI I +
Sbjct: 940 LSGLHRTYSQD----------CSFKNS-----MYHVGDYVYVEPAEANLQPHIVCIERLW 984
Query: 78 KTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISKVIV 131
+ + GE++ WFYR +T F + K +F S N PV I+ K +V
Sbjct: 985 EDSAGEKWLYGCWFYRPNETFHLATRKFLE-KEVFKSDYYNKVPVSKILGKCVV 1037
>sp|P29567|MTHT_METTF Modification methylase MthTI OS=Methanobacterium thermoformicicum
GN=mthTIM PE=3 SV=1
Length = 330
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 423 DVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILK 482
DV GGPPCQ S D P R + ++D+V+ P + L ENV I+
Sbjct: 63 DVVGFIGGPPCQSWSLAGSMCGADDP----RGKTFYAYVDLVKEKDPLFFLAENVPGIVS 118
Query: 483 FDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ ++ + + Y + ++ A YG+PQ R R
Sbjct: 119 RTHLPEFKRLVNSFIDIGYNVEYKVLNAKDYGVPQDRKR 157
>sp|Q99549|MPP8_HUMAN M-phase phosphoprotein 8 OS=Homo sapiens GN=MPHOSPH8 PE=1 SV=2
Length = 860
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 355 YEVARIVDICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGFK 414
+EV +I+D+ E GK + +KV WKGY++ +D+WEP L +C E + EF + +
Sbjct: 59 FEVEKILDM----KTEGGK--VLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAE 112
Query: 415 SKILPLPGDV 424
+K + D+
Sbjct: 113 NKAKAVRKDI 122
>sp|Q8EL95|MT36_OCEIH Putative modification methylase OB3336 OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=OB3336 PE=3 SV=1
Length = 460
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 426 VICGGPPCQGIS--GYNRFRNVDSPL---DDERNRQIVIFMDIVEFLKPKYVLMENVVDI 480
++ GGPPCQ S G + +++ +D R + F+D + ++MENV +
Sbjct: 90 IVIGGPPCQAYSKIGRAKLKSLGEERRQENDARGKLYENFLDYALHVDANVIVMENVPEA 149
Query: 481 LKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ + ++ L++ Y A + ++ A +G+PQ R+R
Sbjct: 150 VNYGGVNIPDTVCDILINKGYDAIWTVLNAADFGVPQTRVR 190
>sp|Q5XGC9|SRFB1_XENTR Serum response factor-binding protein 1 OS=Xenopus tropicalis
GN=srfbp1 PE=2 SV=1
Length = 535
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 287 ENKQRSMSQRVTRNSVNSPSITRNSVDSPKVTGNSVDSPRVTRSSVNSPRVTRNSVNSP 345
ENK++ +Q V R +V P++ R +V+ P V +V+ P V R +V P V R +V P
Sbjct: 206 ENKEQPKAQDVERPAVERPAVERPAVERPAVERPAVERPAVERPAVERPAVERPAVERP 264
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 284 VERENKQRSMSQR--VTRNSVNSPSITRNSVDSPKVTGNSVDSPRVTRSSVNSPRVTRNS 341
VER +R +R V R +V P++ R +V+ P V +V+ P V R V SP V R
Sbjct: 276 VERPAVERPAVERPAVERPAVERPAVERPAVERPAVERPAVERPAVERPVVESPAVERPP 335
Query: 342 VNSP 345
V SP
Sbjct: 336 VESP 339
>sp|P05102|MTH1_HAEPH Modification methylase HhaI OS=Haemophilus parahaemolyticus
GN=hhaIM PE=1 SV=1
Length = 327
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 423 DVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILK 482
D D++C G PCQ S +D R IV KPK V MENV +
Sbjct: 71 DHDILCAGFPCQAFS----ISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFAS 126
Query: 483 FDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
D + + + + Y ++ A YG+PQ R R
Sbjct: 127 HDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRER 165
>sp|Q6AYK9|CDYL_RAT Chromodomain Y-like protein OS=Rattus norvegicus GN=Cdyl PE=2 SV=1
Length = 589
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 341 SVNSPRDVD--IPPGEYEVARIVDICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGL 398
+V+ P V + E +V IVD N+ GK + V WKGY + +D+WEP + L
Sbjct: 39 TVSDPDQVSPAVQDAETQVESIVD---KRKNKKGK--TEYLVRWKGYDSEDDTWEPEQHL 93
Query: 399 RNCPERIKEFVR 410
NC E I +F R
Sbjct: 94 VNCEEYIHDFNR 105
>sp|Q9WTK2|CDYL_MOUSE Chromodomain Y-like protein OS=Mus musculus GN=Cdyl PE=1 SV=1
Length = 593
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 350 IPPGEYEVARIVDICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFV 409
I E +V IVD N+ GK + V WKGY + +D+WEP + L NC E I +F
Sbjct: 51 IQDAETQVESIVD---KRKNKKGK--TEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFN 105
Query: 410 R 410
R
Sbjct: 106 R 106
>sp|P34879|MTS2_SHISO Modification methylase SsoII OS=Shigella sonnei GN=ssoIIM PE=3 SV=1
Length = 379
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 423 DVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLK---PKYVLMENVVD 479
D +++ GG PC S + +D R +F DI +K P L+ENV +
Sbjct: 132 DHEILVGGFPCVAFSQ----AGLKKGFNDTRG---TLFFDIARIIKEKKPHAFLLENVKN 184
Query: 480 ILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+L DK + L + Y + I AA +G+PQ R R
Sbjct: 185 LLGHDKGRTFSIIKNTLEELNYTVYYNIFAAKDFGVPQNRER 226
>sp|P10283|MTB1_BREEP Modification methylase BepI OS=Brevibacterium epidermidis GN=bepIM
PE=3 SV=1
Length = 403
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 400 NCPERIKEF-----VRNGFKSKILPLPGDVDVICGGPPCQGISGYNRFRNVDS------- 447
N PE I V N ++K P D+DV+ GG PCQ S + + DS
Sbjct: 77 NQPENIFHLESIVDVVNNIENKQFSFPNDIDVVTGGFPCQDFSFAGKRKGFDSHKDHNGI 136
Query: 448 ----PLDDERNRQIVIFMDIVEFLKPKYVLMENV 477
P + R + + +VE KPK + ENV
Sbjct: 137 IYNEPTEATRGQLYLWLKKVVEITKPKVFIAENV 170
>sp|Q59603|MTB1_NEIGO Modification methylase NgoBI OS=Neisseria gonorrhoeae GN=ngoBIM
PE=3 SV=2
Length = 317
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 411 NGFKSKILPLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLK-- 468
NG +P D D++ G PCQ S + +D R +F +I E LK
Sbjct: 52 NGIDPSDIP---DHDILLAGFPCQPFSIAGKGLG----FEDTRG---TLFFNIAEILKTK 101
Query: 469 -PKYVLMENVVDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
PK L+ENV + D R L L + Y F ++ +GLPQ R R
Sbjct: 102 QPKAFLLENVKRLTTHDSGRTFRIVLETLKQLGYTVYFKVLNTLDFGLPQKRER 155
>sp|O34939|YDIO_BACSU Probable BsuMI modification methylase subunit YdiO OS=Bacillus
subtilis (strain 168) GN=ydiO PE=2 SV=1
Length = 427
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 424 VDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKF 483
+D I GPPCQG S N P RN ++ ++E +P VL+ENV I+
Sbjct: 167 IDFILAGPPCQGHSDLNNHTRRKDP----RNALLMRVSRVIELFQPSSVLVENVPGIIHD 222
Query: 484 DKASLGRYALSRLVHMKYQARFG---IIAAGCYGLPQFRLR 521
S + H+K Q + ++ A G+ Q R R
Sbjct: 223 KSGSFKEFK----NHLKTQGYYFDEIVLNAEKLGVSQARRR 259
>sp|Q59606|MTF7_NEIGO Modification methylase NgoFVII OS=Neisseria gonorrhoeae GN=ngoFVIIM
PE=3 SV=1
Length = 374
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 419 PLPGDVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVV 478
P D D+I GG PCQ S + L+ ER F+ V KPK + ENV
Sbjct: 74 PTIPDCDIILGGFPCQDFSMIWK----QPGLEGERGNLYKSFLRFVNAKKPKVFVAENVK 129
Query: 479 DILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+L +K + ++ + Y + + +G+PQFR R
Sbjct: 130 GLLTANKKKAIQQIITDFENCGYYVQANVYNFAEFGVPQFRER 172
>sp|P34906|MTF1_FUSNU Modification methylase FnuDI OS=Fusobacterium nucleatum GN=fnuDIM
PE=3 SV=1
Length = 344
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 425 DVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFD 484
D I GGPPCQ S R ++ P R + ++ I++ ++PK+ L ENV +L
Sbjct: 63 DGIIGGPPCQSWSEAGSLRGINDP----RGKLFYEYIRILKDIQPKFFLAENVKGMLSKR 118
Query: 485 KASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
+ + Y ++ A YG+ Q R R
Sbjct: 119 NTEAVKDIIKEFEEAGYNVFIKLLNAFDYGVAQDRER 155
>sp|P50185|MTD5_DACSA Modification methylase DsaV OS=Dactylococcopsis salina GN=dsaVM
PE=3 SV=1
Length = 351
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 425 DVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFD 484
D++ G PCQ S R DER + I+ +P+ +L+ENV + D
Sbjct: 67 DLLLAGFPCQAFSQGGR----KQGFQDERGQLFFQVAKILNDHRPQAILLENVKGLRGHD 122
Query: 485 KASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521
K + L L + Y + II+A + LPQ R R
Sbjct: 123 KGRTLQMILYVLEKLNYVVSWKIISATDFNLPQKRER 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 204,029,688
Number of Sequences: 539616
Number of extensions: 8979283
Number of successful extensions: 21034
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 20791
Number of HSP's gapped (non-prelim): 252
length of query: 521
length of database: 191,569,459
effective HSP length: 122
effective length of query: 399
effective length of database: 125,736,307
effective search space: 50168786493
effective search space used: 50168786493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)