Query 046469
Match_columns 521
No_of_seqs 280 out of 2008
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:28:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00145 DNA_methylase: C-5 cy 100.0 3.7E-39 7.9E-44 329.3 7.5 155 205-521 1-155 (335)
2 COG0270 Dcm Site-specific DNA 100.0 1E-37 2.2E-42 323.2 12.2 159 203-521 2-160 (328)
3 TIGR00675 dcm DNA-methyltransf 100.0 3.2E-36 7E-41 310.3 14.3 95 423-521 59-153 (315)
4 cd00315 Cyt_C5_DNA_methylase C 100.0 3.4E-36 7.5E-41 304.6 13.6 95 423-521 62-156 (275)
5 PRK10458 DNA cytosine methylas 100.0 5.4E-35 1.2E-39 313.5 14.7 180 200-521 84-280 (467)
6 cd04708 BAH_plantDCM_II BAH, o 100.0 2.1E-33 4.6E-38 268.0 14.9 171 46-217 1-202 (202)
7 cd04716 BAH_plantDCM_I BAH, or 100.0 2.1E-30 4.6E-35 231.1 13.2 119 50-168 1-122 (122)
8 cd04713 BAH_plant_3 BAH, or Br 99.9 2.6E-26 5.7E-31 211.6 14.9 130 38-168 6-138 (146)
9 cd04717 BAH_polybromo BAH, or 99.9 2.1E-26 4.6E-31 205.8 11.6 117 50-167 1-120 (121)
10 cd04709 BAH_MTA BAH, or Bromo 99.9 1.5E-25 3.3E-30 209.3 12.2 125 50-174 1-147 (164)
11 cd04714 BAH_BAHCC1 BAH, or Bro 99.9 1.6E-25 3.4E-30 200.2 10.0 111 50-161 1-117 (121)
12 cd04710 BAH_fungalPHD BAH, or 99.9 3.6E-25 7.9E-30 201.0 11.6 116 46-164 5-134 (135)
13 PF01426 BAH: BAH domain; Int 99.9 1.2E-24 2.6E-29 192.2 11.2 114 51-167 1-119 (119)
14 smart00439 BAH Bromo adjacent 99.9 2E-24 4.4E-29 190.8 12.2 115 52-167 1-120 (120)
15 cd04370 BAH BAH, or Bromo Adja 99.9 2.7E-24 5.9E-29 190.0 11.8 116 50-166 1-122 (123)
16 cd04715 BAH_Orc1p_like BAH, or 99.9 2.1E-23 4.6E-28 194.2 13.9 129 37-165 14-153 (159)
17 cd04760 BAH_Dnmt1_I BAH, or Br 99.9 4.1E-23 8.9E-28 183.7 10.9 112 50-164 1-124 (124)
18 cd04721 BAH_plant_1 BAH, or Br 99.9 2.7E-22 5.8E-27 181.3 9.9 113 47-159 2-117 (130)
19 cd04712 BAH_DCM_I BAH, or Brom 99.9 2E-21 4.3E-26 175.7 13.5 112 49-167 2-129 (130)
20 cd04711 BAH_Dnmt1_II BAH, or B 99.8 3.5E-21 7.7E-26 172.1 7.7 109 60-168 15-137 (137)
21 KOG0919 C-5 cytosine-specific 99.8 2.1E-21 4.5E-26 187.7 6.3 92 423-521 69-162 (338)
22 cd04718 BAH_plant_2 BAH, or Br 99.8 1.1E-21 2.4E-26 178.3 1.3 97 66-166 51-147 (148)
23 cd04720 BAH_Orc1p_Yeast BAH, o 99.7 1.1E-17 2.4E-22 159.2 11.8 122 45-166 44-177 (179)
24 cd04719 BAH_Orc1p_animal BAH, 99.7 2.5E-17 5.3E-22 148.1 9.5 109 51-159 2-121 (128)
25 KOG1827 Chromatin remodeling c 99.5 6.1E-15 1.3E-19 160.6 6.0 147 22-169 158-309 (629)
26 KOG1886 BAH domain proteins [T 99.5 4.4E-14 9.6E-19 148.9 6.6 129 39-168 36-170 (464)
27 KOG3554 Histone deacetylase co 99.1 6.1E-12 1.3E-16 130.8 -2.3 112 52-163 5-160 (693)
28 PF00385 Chromo: Chromo (CHRro 97.2 0.00028 6.1E-09 53.9 3.2 50 355-410 1-54 (55)
29 cd00024 CHROMO Chromatin organ 97.2 0.00059 1.3E-08 51.7 4.4 53 353-409 1-53 (55)
30 TIGR03704 PrmC_rel_meth putati 97.0 0.0058 1.3E-07 61.4 10.8 44 204-252 87-130 (251)
31 PF13659 Methyltransf_26: Meth 96.9 0.0028 6.1E-08 55.0 7.0 44 205-254 2-45 (117)
32 TIGR00479 rumA 23S rRNA (uraci 96.9 0.0093 2E-07 64.5 12.5 55 205-266 294-353 (431)
33 TIGR02085 meth_trns_rumB 23S r 96.7 0.0083 1.8E-07 63.8 10.3 40 206-252 236-275 (374)
34 COG2263 Predicted RNA methylas 96.7 0.0022 4.7E-08 61.7 4.8 58 203-266 45-106 (198)
35 TIGR00095 RNA methyltransferas 96.6 0.0041 8.9E-08 59.9 5.9 57 204-266 50-112 (189)
36 KOG1911 Heterochromatin-associ 96.6 0.0018 3.9E-08 65.9 3.6 63 344-412 38-100 (270)
37 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.032 7E-07 64.2 11.9 42 205-252 540-581 (702)
38 KOG3420 Predicted RNA methylas 96.1 0.0052 1.1E-07 56.7 3.4 46 201-252 46-91 (185)
39 COG0742 N6-adenine-specific me 96.0 0.012 2.7E-07 56.6 5.7 60 202-267 42-107 (187)
40 PRK10909 rsmD 16S rRNA m(2)G96 95.7 0.021 4.6E-07 55.5 6.3 56 205-266 55-115 (199)
41 PF09445 Methyltransf_15: RNA 95.7 0.011 2.4E-07 55.7 4.2 39 206-251 2-40 (163)
42 TIGR00446 nop2p NOL1/NOP2/sun 95.6 0.063 1.4E-06 54.3 9.6 44 205-252 73-116 (264)
43 smart00298 CHROMO Chromatin or 95.6 0.0099 2.1E-07 44.8 2.7 51 355-410 2-52 (55)
44 PRK05031 tRNA (uracil-5-)-meth 95.6 0.024 5.1E-07 60.1 6.4 55 206-267 209-268 (362)
45 PF03602 Cons_hypoth95: Conser 95.6 0.016 3.5E-07 55.6 4.7 59 202-266 41-105 (183)
46 TIGR00308 TRM1 tRNA(guanine-26 95.5 0.018 3.9E-07 61.3 5.4 70 204-284 45-120 (374)
47 PF02475 Met_10: Met-10+ like- 95.3 0.022 4.9E-07 55.5 4.6 41 206-251 104-144 (200)
48 TIGR00537 hemK_rel_arch HemK-r 95.3 0.21 4.6E-06 47.1 11.2 41 205-252 21-61 (179)
49 PRK14967 putative methyltransf 95.0 0.42 9.1E-06 46.8 12.8 42 205-252 38-79 (223)
50 TIGR02143 trmA_only tRNA (urac 95.0 0.038 8.2E-07 58.4 5.7 54 206-266 200-258 (353)
51 PRK04338 N(2),N(2)-dimethylgua 94.8 0.056 1.2E-06 57.8 6.4 58 204-266 58-120 (382)
52 PRK15128 23S rRNA m(5)C1962 me 94.7 0.053 1.1E-06 58.3 6.1 57 205-267 222-285 (396)
53 PRK03522 rumB 23S rRNA methylu 94.7 0.054 1.2E-06 56.2 5.9 55 205-266 175-234 (315)
54 PHA03411 putative methyltransf 94.6 0.072 1.6E-06 54.4 6.5 57 205-266 66-122 (279)
55 PRK14904 16S rRNA methyltransf 94.3 0.26 5.7E-06 53.6 10.2 44 205-252 252-295 (445)
56 PHA03412 putative methyltransf 94.2 0.061 1.3E-06 53.8 4.8 59 204-264 50-108 (241)
57 COG2520 Predicted methyltransf 94.1 0.057 1.2E-06 56.7 4.4 42 205-252 190-231 (341)
58 PRK10901 16S rRNA methyltransf 93.9 0.32 6.9E-06 52.7 9.8 43 205-252 246-288 (427)
59 COG2265 TrmA SAM-dependent met 93.8 0.076 1.6E-06 57.7 5.0 58 203-267 293-355 (432)
60 PRK14901 16S rRNA methyltransf 93.6 0.29 6.4E-06 53.1 9.0 44 205-252 254-297 (434)
61 PRK14903 16S rRNA methyltransf 93.1 0.25 5.5E-06 53.7 7.6 44 205-252 239-282 (431)
62 PRK14902 16S rRNA methyltransf 92.8 0.16 3.5E-06 55.2 5.6 44 205-252 252-295 (444)
63 PF05958 tRNA_U5-meth_tr: tRNA 92.8 0.13 2.9E-06 54.3 4.8 54 206-266 199-257 (352)
64 PRK00121 trmB tRNA (guanine-N( 92.8 0.93 2E-05 43.9 10.4 55 203-262 40-99 (202)
65 PRK03612 spermidine synthase; 92.5 2.2 4.8E-05 47.5 14.0 43 204-251 298-340 (521)
66 smart00650 rADc Ribosomal RNA 92.2 0.2 4.3E-06 46.9 4.7 54 205-265 15-71 (169)
67 PRK13168 rumA 23S rRNA m(5)U19 92.2 0.23 5.1E-06 54.0 5.8 55 205-266 299-358 (443)
68 PF05175 MTS: Methyltransferas 92.0 0.28 6E-06 46.1 5.4 45 203-252 31-75 (170)
69 PF13649 Methyltransf_25: Meth 91.7 0.37 8.1E-06 40.8 5.5 58 207-266 1-62 (101)
70 PF13847 Methyltransf_31: Meth 91.6 0.34 7.3E-06 44.3 5.3 58 203-264 3-65 (152)
71 PRK07402 precorrin-6B methylas 91.0 0.52 1.1E-05 45.1 6.2 56 205-265 42-102 (196)
72 PF12847 Methyltransf_18: Meth 90.2 0.44 9.6E-06 40.6 4.5 53 205-262 3-61 (112)
73 cd02440 AdoMet_MTases S-adenos 89.5 0.97 2.1E-05 36.3 5.9 55 206-266 1-60 (107)
74 PRK06202 hypothetical protein; 89.4 0.85 1.8E-05 44.8 6.4 61 203-264 60-122 (232)
75 COG2890 HemK Methylase of poly 89.3 0.43 9.4E-06 48.9 4.3 42 206-252 113-154 (280)
76 KOG1227 Putative methyltransfe 89.1 0.24 5.2E-06 51.0 2.2 43 205-252 196-238 (351)
77 PRK00377 cbiT cobalt-precorrin 89.1 0.87 1.9E-05 43.8 6.1 59 204-266 41-105 (198)
78 KOG2078 tRNA modification enzy 89.0 0.33 7.2E-06 52.1 3.3 56 205-267 251-313 (495)
79 PF02005 TRM: N2,N2-dimethylgu 88.3 0.78 1.7E-05 49.1 5.6 61 203-267 49-116 (377)
80 KOG2748 Uncharacterized conser 88.3 0.18 3.8E-06 52.4 0.7 54 352-412 8-61 (369)
81 COG2264 PrmA Ribosomal protein 88.2 0.72 1.6E-05 47.8 5.0 44 203-252 162-205 (300)
82 TIGR03587 Pse_Me-ase pseudamin 88.2 0.95 2.1E-05 44.1 5.7 55 205-264 45-99 (204)
83 PRK11933 yebU rRNA (cytosine-C 87.7 1.5 3.3E-05 48.3 7.5 46 203-252 113-158 (470)
84 PF06325 PrmA: Ribosomal prote 87.6 0.69 1.5E-05 47.8 4.5 41 206-252 164-204 (295)
85 PRK00274 ksgA 16S ribosomal RN 87.0 0.82 1.8E-05 46.5 4.6 54 205-265 44-99 (272)
86 TIGR03533 L3_gln_methyl protei 86.9 1 2.2E-05 46.1 5.3 43 205-252 123-165 (284)
87 TIGR00755 ksgA dimethyladenosi 86.7 0.97 2.1E-05 45.2 4.9 55 204-265 30-87 (253)
88 KOG2904 Predicted methyltransf 86.6 0.85 1.9E-05 46.6 4.4 45 202-251 147-191 (328)
89 TIGR00406 prmA ribosomal prote 86.2 1 2.2E-05 46.1 4.9 42 205-252 161-202 (288)
90 TIGR02021 BchM-ChlM magnesium 86.1 1.3 2.8E-05 43.0 5.4 43 204-253 56-98 (219)
91 TIGR01177 conserved hypothetic 85.9 1.1 2.4E-05 46.7 5.0 54 204-264 183-241 (329)
92 COG1092 Predicted SAM-dependen 85.5 13 0.00029 40.0 13.0 55 206-266 220-281 (393)
93 PRK01683 trans-aconitate 2-met 85.3 2.1 4.5E-05 42.6 6.5 57 204-265 32-88 (258)
94 PF10672 Methyltrans_SAM: S-ad 85.1 1.6 3.5E-05 45.0 5.6 58 205-268 125-189 (286)
95 COG5076 Transcription factor i 85.1 0.098 2.1E-06 55.6 -3.3 96 43-139 267-364 (371)
96 PRK00517 prmA ribosomal protei 85.1 1.3 2.7E-05 44.4 4.8 44 203-252 119-162 (250)
97 TIGR00138 gidB 16S rRNA methyl 84.5 1.9 4E-05 41.2 5.5 57 204-265 43-104 (181)
98 PLN02396 hexaprenyldihydroxybe 84.4 2.3 4.9E-05 44.6 6.5 56 203-265 131-192 (322)
99 PRK10258 biotin biosynthesis p 84.3 1.9 4.1E-05 42.8 5.6 55 204-265 43-97 (251)
100 KOG2730 Methylase [General fun 84.3 1.4 3E-05 43.7 4.5 64 205-278 96-165 (263)
101 PRK00811 spermidine synthase; 84.1 2.8 6E-05 42.9 6.9 59 204-267 77-145 (283)
102 COG2227 UbiG 2-polyprenyl-3-me 83.9 1.8 3.8E-05 43.4 5.1 58 202-266 58-119 (243)
103 PRK08287 cobalt-precorrin-6Y C 83.8 1.8 3.8E-05 41.1 5.0 43 205-252 33-75 (187)
104 COG4123 Predicted O-methyltran 83.6 1.7 3.8E-05 43.8 5.0 60 204-268 45-110 (248)
105 COG3963 Phospholipid N-methylt 83.5 3.4 7.3E-05 39.5 6.5 66 202-271 47-112 (194)
106 TIGR02469 CbiT precorrin-6Y C5 82.9 3.3 7.2E-05 35.5 6.0 54 205-263 21-79 (124)
107 PLN02585 magnesium protoporphy 82.7 1.9 4.1E-05 45.0 5.0 44 203-253 144-187 (315)
108 TIGR00536 hemK_fam HemK family 82.4 1.8 3.9E-05 44.2 4.7 43 205-252 116-158 (284)
109 PRK14896 ksgA 16S ribosomal RN 82.3 1.8 4E-05 43.5 4.7 54 205-265 31-87 (258)
110 PRK11036 putative S-adenosyl-L 82.0 2.9 6.3E-05 41.7 6.0 57 203-266 44-106 (255)
111 PRK11805 N5-glutamine S-adenos 81.9 1.6 3.5E-05 45.2 4.2 43 205-252 135-177 (307)
112 COG2226 UbiE Methylase involve 81.7 2.8 6.1E-05 42.1 5.6 59 203-266 51-114 (238)
113 PLN02781 Probable caffeoyl-CoA 81.4 3.5 7.5E-05 41.0 6.2 59 205-267 70-134 (234)
114 TIGR02752 MenG_heptapren 2-hep 81.2 2.4 5.3E-05 41.3 5.0 56 205-264 47-107 (231)
115 PF01170 UPF0020: Putative RNA 81.0 2.1 4.5E-05 40.8 4.3 46 204-252 29-81 (179)
116 PRK11727 23S rRNA mA1618 methy 80.7 2.5 5.4E-05 44.3 5.1 47 201-252 112-158 (321)
117 TIGR00563 rsmB ribosomal RNA s 80.5 2.3 5E-05 46.0 5.0 43 205-252 240-282 (426)
118 PRK04266 fibrillarin; Provisio 80.5 4 8.7E-05 40.5 6.3 54 205-263 74-130 (226)
119 PF11599 AviRa: RRNA methyltra 80.4 2.8 6.1E-05 41.5 4.9 47 201-252 49-97 (246)
120 PRK01581 speE spermidine synth 80.3 33 0.00072 36.7 13.3 43 203-250 150-192 (374)
121 PRK00050 16S rRNA m(4)C1402 me 80.1 4.5 9.8E-05 41.9 6.7 61 205-269 21-84 (296)
122 TIGR02227 sigpep_I_bact signal 79.9 9.6 0.00021 35.7 8.3 53 25-77 24-78 (163)
123 TIGR00080 pimt protein-L-isoas 79.4 4.5 9.7E-05 39.3 6.2 57 204-264 78-139 (215)
124 PRK09328 N5-glutamine S-adenos 78.9 2.4 5.2E-05 42.4 4.2 45 203-252 108-152 (275)
125 PRK11188 rrmJ 23S rRNA methylt 78.5 2.1 4.6E-05 41.8 3.6 52 205-266 53-104 (209)
126 COG1867 TRM1 N2,N2-dimethylgua 78.2 3 6.5E-05 44.3 4.7 59 204-267 53-116 (380)
127 PRK11088 rrmA 23S rRNA methylt 78.1 4.4 9.5E-05 41.0 5.9 60 203-264 85-144 (272)
128 PRK11207 tellurite resistance 77.9 4.5 9.7E-05 38.9 5.6 41 204-251 31-71 (197)
129 PRK15001 SAM-dependent 23S rib 77.9 3.4 7.3E-05 44.3 5.1 42 206-252 231-272 (378)
130 TIGR00478 tly hemolysin TlyA f 77.0 4.9 0.00011 40.0 5.7 46 203-254 75-120 (228)
131 COG0144 Sun tRNA and rRNA cyto 77.0 12 0.00027 39.6 9.0 47 203-252 156-202 (355)
132 PRK09489 rsmC 16S ribosomal RN 76.4 3.8 8.3E-05 43.2 5.0 42 206-252 199-240 (342)
133 PRK07580 Mg-protoporphyrin IX 75.7 4.2 9E-05 39.4 4.8 44 203-253 63-106 (230)
134 TIGR03840 TMPT_Se_Te thiopurin 75.7 3.8 8.3E-05 40.2 4.5 38 205-249 36-73 (213)
135 TIGR01934 MenG_MenH_UbiE ubiqu 75.6 6.4 0.00014 37.6 6.0 58 203-264 39-99 (223)
136 PF00398 RrnaAD: Ribosomal RNA 74.8 4.3 9.4E-05 40.9 4.7 56 203-265 30-88 (262)
137 TIGR00417 speE spermidine synt 74.7 8.6 0.00019 38.9 6.9 56 206-266 75-139 (270)
138 PRK14968 putative methyltransf 74.5 4.3 9.3E-05 37.8 4.4 41 205-252 25-65 (188)
139 TIGR02072 BioC biotin biosynth 74.3 6.9 0.00015 37.7 5.9 57 203-264 34-91 (240)
140 KOG2187 tRNA uracil-5-methyltr 74.2 2.4 5.2E-05 46.7 2.8 56 205-267 385-445 (534)
141 PF01555 N6_N4_Mtase: DNA meth 73.9 4.1 8.8E-05 38.9 4.1 37 206-249 194-230 (231)
142 PRK04148 hypothetical protein; 73.7 8.5 0.00018 35.3 5.8 51 203-262 16-67 (134)
143 PRK14966 unknown domain/N5-glu 73.3 5.2 0.00011 43.4 5.1 42 206-252 254-295 (423)
144 PF01209 Ubie_methyltran: ubiE 72.8 6 0.00013 39.4 5.1 59 203-265 47-110 (233)
145 PLN02823 spermine synthase 72.7 67 0.0015 33.9 13.1 44 205-253 105-148 (336)
146 PTZ00338 dimethyladenosine tra 72.3 6.2 0.00013 40.8 5.2 54 205-265 38-97 (294)
147 TIGR02987 met_A_Alw26 type II 72.2 5.4 0.00012 44.3 5.2 48 203-251 31-82 (524)
148 TIGR03534 RF_mod_PrmC protein- 72.0 5.3 0.00012 39.1 4.6 44 204-252 88-131 (251)
149 PLN02233 ubiquinone biosynthes 72.0 5.9 0.00013 39.9 5.0 57 204-264 74-138 (261)
150 PRK13944 protein-L-isoaspartat 71.7 6.5 0.00014 38.0 5.0 44 205-252 74-117 (205)
151 PLN02244 tocopherol O-methyltr 71.6 6 0.00013 41.5 5.0 56 203-264 118-179 (340)
152 PRK08317 hypothetical protein; 71.4 8 0.00017 37.1 5.6 56 204-263 20-79 (241)
153 PTZ00146 fibrillarin; Provisio 70.8 8.8 0.00019 39.7 5.9 55 205-263 134-191 (293)
154 PRK01544 bifunctional N5-gluta 70.5 5.1 0.00011 44.5 4.4 44 204-252 139-182 (506)
155 PRK10708 hypothetical protein; 70.5 12 0.00026 29.1 5.0 43 54-96 2-51 (62)
156 TIGR00438 rrmJ cell division p 69.8 4.2 9.1E-05 38.6 3.1 51 204-264 33-83 (188)
157 PRK10742 putative methyltransf 69.2 7.7 0.00017 39.2 4.9 43 203-252 88-130 (250)
158 PRK00216 ubiE ubiquinone/menaq 69.1 8.5 0.00018 37.2 5.2 47 203-253 51-97 (239)
159 PRK13255 thiopurine S-methyltr 68.6 7.1 0.00015 38.5 4.5 38 205-249 39-76 (218)
160 PRK04457 spermidine synthase; 68.3 11 0.00023 38.2 5.8 58 205-267 68-131 (262)
161 PF03291 Pox_MCEL: mRNA cappin 68.1 6.8 0.00015 41.2 4.5 42 203-250 62-103 (331)
162 PF02086 MethyltransfD12: D12 68.0 4.3 9.3E-05 40.2 2.9 40 203-249 20-59 (260)
163 TIGR02081 metW methionine bios 67.1 12 0.00026 35.6 5.7 52 205-264 15-66 (194)
164 PF10781 DSRB: Dextransucrase 66.8 17 0.00038 28.2 5.2 43 54-96 2-51 (62)
165 COG2242 CobL Precorrin-6B meth 66.5 15 0.00032 35.6 6.0 56 206-266 37-97 (187)
166 PRK15451 tRNA cmo(5)U34 methyl 66.1 8 0.00017 38.5 4.4 57 205-264 58-120 (247)
167 PF08241 Methyltransf_11: Meth 65.4 15 0.00032 29.5 5.2 52 208-265 1-54 (95)
168 TIGR00091 tRNA (guanine-N(7)-) 65.0 15 0.00033 35.0 6.0 58 204-266 17-79 (194)
169 PRK05134 bifunctional 3-demeth 64.8 20 0.00042 35.0 6.8 57 203-266 48-108 (233)
170 PF03848 TehB: Tellurite resis 64.6 11 0.00023 36.7 4.8 40 203-249 30-69 (192)
171 TIGR01983 UbiG ubiquinone bios 64.6 15 0.00031 35.5 5.8 56 203-265 45-105 (224)
172 PRK12335 tellurite resistance 62.7 10 0.00023 38.6 4.6 39 206-251 123-161 (287)
173 PLN02476 O-methyltransferase 62.5 19 0.00041 37.1 6.3 60 204-267 119-184 (278)
174 PF02384 N6_Mtase: N-6 DNA Met 61.7 11 0.00024 38.6 4.6 49 203-251 46-96 (311)
175 PRK06922 hypothetical protein; 61.1 15 0.00032 42.3 5.7 57 204-265 419-479 (677)
176 TIGR03438 probable methyltrans 61.0 15 0.00033 37.8 5.4 60 205-268 65-130 (301)
177 PRK13942 protein-L-isoaspartat 60.3 15 0.00032 35.8 5.0 44 205-252 78-121 (212)
178 PRK05785 hypothetical protein; 59.6 17 0.00036 35.9 5.3 51 204-264 52-103 (226)
179 PF13489 Methyltransf_23: Meth 59.0 19 0.00042 32.1 5.3 39 202-247 21-59 (161)
180 TIGR00477 tehB tellurite resis 58.7 19 0.00042 34.4 5.4 41 204-251 31-71 (195)
181 PF05185 PRMT5: PRMT5 arginine 58.5 13 0.00028 40.7 4.7 63 203-266 186-254 (448)
182 PLN02366 spermidine synthase 58.2 28 0.00061 36.2 6.9 59 204-267 92-159 (308)
183 PLN02490 MPBQ/MSBQ methyltrans 58.2 25 0.00054 37.2 6.5 57 203-264 113-171 (340)
184 KOG2133 Transcriptional corepr 57.9 6.2 0.00013 46.3 2.1 119 47-165 140-282 (1229)
185 PF01189 Nol1_Nop2_Fmu: NOL1/N 57.8 20 0.00044 36.7 5.7 43 205-251 87-129 (283)
186 PRK00107 gidB 16S rRNA methylt 57.7 19 0.00041 34.6 5.2 43 204-251 46-88 (187)
187 PTZ00098 phosphoethanolamine N 57.4 23 0.0005 35.7 6.0 46 203-254 52-97 (263)
188 PRK13699 putative methylase; P 57.1 15 0.00032 36.4 4.4 39 206-251 166-204 (227)
189 PRK11524 putative methyltransf 57.0 14 0.00031 37.7 4.4 40 206-252 211-250 (284)
190 PRK15068 tRNA mo(5)U34 methylt 56.8 19 0.00041 37.6 5.3 55 205-265 124-184 (322)
191 PRK14103 trans-aconitate 2-met 56.5 26 0.00055 34.9 6.1 56 203-265 29-84 (255)
192 PLN02672 methionine S-methyltr 55.6 15 0.00032 44.6 4.8 43 205-252 120-162 (1082)
193 cd05834 HDGF_related The PWWP 54.3 18 0.00038 30.3 3.8 42 52-93 2-43 (83)
194 PF09926 DUF2158: Uncharacteri 54.0 21 0.00045 27.5 3.8 40 53-94 1-40 (53)
195 COG3897 Predicted methyltransf 52.6 7.8 0.00017 37.9 1.5 46 201-252 77-122 (218)
196 TIGR00452 methyltransferase, p 51.6 28 0.00061 36.4 5.6 55 205-265 123-183 (314)
197 PRK00312 pcm protein-L-isoaspa 50.6 24 0.00051 34.0 4.6 44 203-253 78-121 (212)
198 KOG4169 15-hydroxyprostaglandi 50.5 27 0.00059 35.1 5.0 75 210-284 10-86 (261)
199 PF01728 FtsJ: FtsJ-like methy 50.3 17 0.00037 34.1 3.5 50 203-262 23-72 (181)
200 PRK11873 arsM arsenite S-adeno 50.0 34 0.00074 34.2 5.8 57 204-264 78-139 (272)
201 TIGR01444 fkbM_fam methyltrans 48.6 32 0.00069 30.5 4.9 42 206-252 1-42 (143)
202 COG0030 KsgA Dimethyladenosine 48.3 29 0.00064 35.3 5.0 55 204-265 31-88 (259)
203 PF08940 DUF1918: Domain of un 47.1 27 0.00059 27.4 3.5 37 54-91 4-42 (58)
204 cd06080 MUM1_like Mutated mela 46.5 30 0.00064 28.9 3.9 39 53-94 1-39 (80)
205 PRK13943 protein-L-isoaspartat 45.3 38 0.00082 35.5 5.4 56 204-263 81-141 (322)
206 PTZ00112 origin recognition co 45.1 41 0.00088 40.3 6.0 58 39-96 439-521 (1164)
207 KOG1270 Methyltransferases [Co 45.0 23 0.00051 36.1 3.6 40 205-251 91-130 (282)
208 PLN02336 phosphoethanolamine N 44.9 27 0.00059 38.1 4.5 38 205-249 39-76 (475)
209 PF10383 Clr2: Transcription-s 44.8 88 0.0019 28.7 7.2 52 41-92 1-71 (139)
210 cd05835 Dnmt3b_related The PWW 44.4 26 0.00056 29.4 3.3 40 53-92 1-43 (87)
211 TIGR00740 methyltransferase, p 41.2 55 0.0012 32.1 5.6 60 203-265 53-118 (239)
212 COG1041 Predicted DNA modifica 41.2 19 0.00041 38.2 2.4 40 206-252 200-239 (347)
213 PRK09496 trkA potassium transp 40.4 61 0.0013 34.8 6.3 55 210-267 235-289 (453)
214 PF07021 MetW: Methionine bios 40.3 77 0.0017 30.9 6.3 56 205-268 15-70 (193)
215 PRK14121 tRNA (guanine-N(7)-)- 40.1 51 0.0011 35.6 5.5 59 205-268 124-187 (390)
216 COG4106 Tam Trans-aconitate me 39.5 50 0.0011 33.1 4.8 59 202-265 29-87 (257)
217 COG4076 Predicted RNA methylas 38.0 32 0.00069 33.7 3.2 54 205-265 34-92 (252)
218 PF10777 YlaC: Inner membrane 36.9 53 0.0011 30.7 4.3 46 1-55 62-107 (155)
219 KOG1540 Ubiquinone biosynthesi 36.9 50 0.0011 33.8 4.5 62 205-266 102-172 (296)
220 PLN02336 phosphoethanolamine N 36.1 60 0.0013 35.4 5.5 44 203-252 266-309 (475)
221 PRK11705 cyclopropane fatty ac 35.3 72 0.0016 34.2 5.8 44 205-254 169-212 (383)
222 PF02390 Methyltransf_4: Putat 35.0 85 0.0018 30.3 5.7 59 206-269 20-83 (195)
223 cd05162 PWWP The PWWP domain, 34.9 51 0.0011 27.2 3.7 40 53-92 1-46 (87)
224 PF03807 F420_oxidored: NADP o 34.5 1.4E+02 0.0031 24.4 6.4 43 211-253 4-47 (96)
225 PF02254 TrkA_N: TrkA-N domain 34.4 1.2E+02 0.0027 25.7 6.2 54 210-268 2-55 (116)
226 PF01175 Urocanase: Urocanase; 34.3 1.2E+02 0.0026 33.9 7.1 62 209-274 160-221 (546)
227 PF01408 GFO_IDH_MocA: Oxidore 33.1 1.8E+02 0.0039 24.7 7.1 56 210-267 4-59 (120)
228 smart00828 PKS_MT Methyltransf 32.8 67 0.0014 30.9 4.7 43 206-253 2-44 (224)
229 smart00293 PWWP domain with co 32.7 59 0.0013 25.4 3.5 40 53-92 1-47 (63)
230 TIGR00006 S-adenosyl-methyltra 32.5 1.1E+02 0.0023 32.0 6.3 60 206-270 23-86 (305)
231 PF01564 Spermine_synth: Sperm 32.4 1.2E+02 0.0027 30.3 6.6 60 203-267 76-144 (246)
232 KOG3191 Predicted N6-DNA-methy 32.4 1.2E+02 0.0026 29.6 6.1 58 204-265 44-105 (209)
233 KOG1122 tRNA and rRNA cytosine 32.4 44 0.00095 36.4 3.5 62 201-266 239-305 (460)
234 PRK05414 urocanate hydratase; 31.7 1E+02 0.0023 34.3 6.2 64 208-275 169-232 (556)
235 PTZ00357 methyltransferase; Pr 30.9 1.1E+02 0.0024 35.6 6.3 62 202-265 699-775 (1072)
236 PF00855 PWWP: PWWP domain; I 30.6 53 0.0012 26.7 3.1 40 53-92 1-43 (86)
237 COG1062 AdhC Zn-dependent alco 30.3 1.3E+02 0.0029 31.9 6.5 51 207-261 188-238 (366)
238 TIGR01228 hutU urocanate hydra 30.3 1.3E+02 0.0028 33.5 6.6 66 208-277 160-225 (545)
239 PF01488 Shikimate_DH: Shikima 30.3 1.2E+02 0.0025 27.3 5.5 55 210-266 16-70 (135)
240 PF13679 Methyltransf_32: Meth 30.0 1.2E+02 0.0026 27.4 5.5 51 200-251 22-72 (141)
241 PRK07984 enoyl-(acyl carrier p 29.2 1.4E+02 0.003 29.8 6.3 69 210-281 10-84 (262)
242 COG2230 Cfa Cyclopropane fatty 28.9 81 0.0017 32.6 4.6 58 203-266 72-135 (283)
243 COG4262 Predicted spermidine s 28.2 5.2E+02 0.011 28.1 10.3 35 215-251 298-332 (508)
244 PF11717 Tudor-knot: RNA bindi 28.1 1.9E+02 0.0041 22.0 5.5 36 53-89 1-36 (55)
245 COG2813 RsmC 16S RNA G1207 met 26.0 1.1E+02 0.0024 31.9 5.0 42 206-252 161-202 (300)
246 smart00138 MeTrc Methyltransfe 25.9 1.1E+02 0.0025 30.8 5.1 47 203-252 99-152 (264)
247 cd05840 SPBC215_ISWI_like The 25.9 70 0.0015 27.3 3.0 39 53-91 1-48 (93)
248 TIGR00571 dam DNA adenine meth 24.7 87 0.0019 31.7 4.0 37 206-251 28-64 (266)
249 COG4671 Predicted glycosyl tra 24.6 1.6E+02 0.0036 31.5 6.0 58 423-481 43-119 (400)
250 PF11302 DUF3104: Protein of u 24.4 1.9E+02 0.0041 23.9 5.1 27 53-79 6-39 (75)
251 PF10294 Methyltransf_16: Puta 24.3 1.2E+02 0.0025 28.5 4.6 44 201-251 43-87 (173)
252 PRK11783 rlmL 23S rRNA m(2)G24 23.7 1.1E+02 0.0025 35.4 5.1 18 234-251 258-275 (702)
253 TIGR02228 sigpep_I_arch signal 23.3 5.1E+02 0.011 24.2 8.6 49 28-78 38-87 (158)
254 PRK13562 acetolactate synthase 22.0 1E+02 0.0022 26.1 3.1 28 471-506 6-33 (84)
255 PRK08690 enoyl-(acyl carrier p 20.9 2.2E+02 0.0047 28.0 6.0 69 214-282 17-85 (261)
256 PF00467 KOW: KOW motif; Inte 20.7 1.7E+02 0.0038 19.6 3.6 25 55-79 1-25 (32)
257 PRK06997 enoyl-(acyl carrier p 20.4 2.2E+02 0.0048 28.1 5.9 67 214-282 17-85 (260)
No 1
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=100.00 E-value=3.7e-39 Score=329.35 Aligned_cols=155 Identities=38% Similarity=0.637 Sum_probs=132.5
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHHHHHHHHHHhhhhhhhhh
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELVKEWQKLCKRFAVNIV 284 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (521)
++++||||||||+++||+ +||++ ++||+|+|+.|++||++||| .+.+.|+.++..-
T Consensus 1 ~~~~dlFsG~Gg~~~g~~----~ag~~--~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~---------------- 56 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLE----QAGFE--VVWAVEIDPDACETYKANFP--EVICGDITEIDPS---------------- 56 (335)
T ss_dssp EEEEEET-TTTHHHHHHH----HTTEE--EEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH----------------
T ss_pred CcEEEEccCccHHHHHHH----hcCcE--EEEEeecCHHHHHhhhhccc--ccccccccccccc----------------
Confidence 589999999999999998 89955 99999999999999999999 7778887755410
Q ss_pred hhhhhhhcccccccccCCCCCCccccCCCCCCccCCCCCCCcccccccCCCccccCCCCCCCCCCCCCCcceeeeEeeee
Q 046469 285 ERENKQRSMSQRVTRNSVNSPSITRNSVDSPKVTGNSVDSPRVTRSSVNSPRVTRNSVNSPRDVDIPPGEYEVARIVDIC 364 (521)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 364 (521)
T Consensus 57 -------------------------------------------------------------------------------- 56 (335)
T PF00145_consen 57 -------------------------------------------------------------------------------- 56 (335)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccCCcceeEEEEccCCCCCCCcccccccCCChhhHHHHHhcccccccCCCCCCcceeecCCCCcCccccCCcCC
Q 046469 365 YGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGFKSKILPLPGDVDVICGGPPCQGISGYNRFRN 444 (521)
Q Consensus 365 ~g~~~~~~~~~l~~~v~w~gy~~~~d~~ep~e~~~~~~~~I~~~v~~~~~~~~~~~~~~vDlL~ggpPCQ~fS~an~~~~ 444 (521)
.++ +++|||+||||||+||.||+.
T Consensus 57 ----------------------------------------------------~l~--~~~D~l~ggpPCQ~fS~ag~~-- 80 (335)
T PF00145_consen 57 ----------------------------------------------------DLP--KDVDLLIGGPPCQGFSIAGKR-- 80 (335)
T ss_dssp ----------------------------------------------------HHH--HT-SEEEEE---TTTSTTSTH--
T ss_pred ----------------------------------------------------ccc--ccceEEEeccCCceEeccccc--
Confidence 000 136999999999999999963
Q ss_pred CCCCCcccchhhHHHHHHHHhhcCCcEEEEecccchhccCcchHHHHHHHHHhcCCCeEEEEEEecCCCCCCCCCCC
Q 046469 445 VDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521 (521)
Q Consensus 445 ~~~~~~d~r~~L~~~~lrii~~~rP~~~l~ENV~gl~~~~~~~~~~~il~~l~~lGY~v~~~vlna~~yGvPQ~R~R 521 (521)
++.+|+|+.|+++++++|+.++|++||||||+||++.+++..++.+++.|.++||++.+.+|||++||+||+|+|
T Consensus 81 --~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~R 155 (335)
T PF00145_consen 81 --KGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAADYGVPQNRER 155 (335)
T ss_dssp --HCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-EE
T ss_pred --cccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccceeehhccccHhhCCCCCceee
Confidence 456899999999999999999999999999999999988889999999999999999999999999999999998
No 2
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-37 Score=323.22 Aligned_cols=159 Identities=30% Similarity=0.492 Sum_probs=140.2
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHHHHHHHHHHhhhhhhh
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELVKEWQKLCKRFAVN 282 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (521)
.+++++||||||||+++||+ .||++ +++|+|+|+.|++||++|||...+...|+..+...
T Consensus 2 ~~~~~idLFsG~GG~~lGf~----~agf~--~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~-------------- 61 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFE----EAGFE--IVFANEIDPPAVATYKANFPHGDIILGDIKELDGE-------------- 61 (328)
T ss_pred CCceEEeeccCCchHHHHHH----hcCCe--EEEEEecCHHHHHHHHHhCCCCceeechHhhcChh--------------
Confidence 46899999999999999998 89965 99999999999999999999766666665543200
Q ss_pred hhhhhhhhhcccccccccCCCCCCccccCCCCCCccCCCCCCCcccccccCCCccccCCCCCCCCCCCCCCcceeeeEee
Q 046469 283 IVERENKQRSMSQRVTRNSVNSPSITRNSVDSPKVTGNSVDSPRVTRSSVNSPRVTRNSVNSPRDVDIPPGEYEVARIVD 362 (521)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 362 (521)
T Consensus 62 -------------------------------------------------------------------------------- 61 (328)
T COG0270 62 -------------------------------------------------------------------------------- 61 (328)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCcccCCcceeEEEEccCCCCCCCcccccccCCChhhHHHHHhcccccccCCCCCCcceeecCCCCcCccccCCc
Q 046469 363 ICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGFKSKILPLPGDVDVICGGPPCQGISGYNRF 442 (521)
Q Consensus 363 ~~~g~~~~~~~~~l~~~v~w~gy~~~~d~~ep~e~~~~~~~~I~~~v~~~~~~~~~~~~~~vDlL~ggpPCQ~fS~an~~ 442 (521)
.+... ++|+|+||||||+||.||++
T Consensus 62 -----------------------------------------------------~~~~~--~~DvligGpPCQ~FS~aG~r 86 (328)
T COG0270 62 -----------------------------------------------------ALRKS--DVDVLIGGPPCQDFSIAGKR 86 (328)
T ss_pred -----------------------------------------------------hcccc--CCCEEEeCCCCcchhhcCcc
Confidence 00000 57999999999999999973
Q ss_pred CCCCCCCcccchhhHHHHHHHHhhcCCcEEEEecccchhccCcchHHHHHHHHHhcCCCeEEEEEEecCCCCCCCCCCC
Q 046469 443 RNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSRLVHMKYQARFGIIAAGCYGLPQFRLR 521 (521)
Q Consensus 443 ~~~~~~~~d~r~~L~~~~lrii~~~rP~~~l~ENV~gl~~~~~~~~~~~il~~l~~lGY~v~~~vlna~~yGvPQ~R~R 521 (521)
++.+|+|+.|+++++|+|+.++|++||||||+||++. ++..++.|++.|+++||.+.+.+|||++|||||+|+|
T Consensus 87 ----~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~gl~~~-~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReR 160 (328)
T COG0270 87 ----RGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKGLLSS-KGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRER 160 (328)
T ss_pred ----cCCcCccceeeHHHHHHHHhhCCCEEEEecCchHHhc-CchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccE
Confidence 5689999999999999999999999999999999998 7889999999999999999999999999999999998
No 3
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.2e-36 Score=310.33 Aligned_cols=95 Identities=29% Similarity=0.508 Sum_probs=89.5
Q ss_pred CcceeecCCCCcCccccCCcCCCCCCCcccchhhHHHHHHHHhhcCCcEEEEecccchhccCcchHHHHHHHHHhcCCCe
Q 046469 423 DVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSRLVHMKYQ 502 (521)
Q Consensus 423 ~vDlL~ggpPCQ~fS~an~~~~~~~~~~d~r~~L~~~~lrii~~~rP~~~l~ENV~gl~~~~~~~~~~~il~~l~~lGY~ 502 (521)
++|+|+||||||+||.||+. ++.+|+|+.|+++++++|+.++|++|+||||+||++..++..++.++..|+++||+
T Consensus 59 ~~dvl~gg~PCq~fS~ag~~----~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~ 134 (315)
T TIGR00675 59 DFDILLGGFPCQPFSIAGKR----KGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYK 134 (315)
T ss_pred CcCEEEecCCCcccchhccc----CCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCE
Confidence 46999999999999999964 35678999999999999999999999999999999988888999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCC
Q 046469 503 ARFGIIAAGCYGLPQFRLR 521 (521)
Q Consensus 503 v~~~vlna~~yGvPQ~R~R 521 (521)
+.+.+|||++||+||+|+|
T Consensus 135 v~~~~l~a~dyGvPQ~R~R 153 (315)
T TIGR00675 135 VYYKVLNAKDFGVPQNRER 153 (315)
T ss_pred EEEEEEcHHHCCCCCCccE
Confidence 9999999999999999998
No 4
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=100.00 E-value=3.4e-36 Score=304.61 Aligned_cols=95 Identities=33% Similarity=0.548 Sum_probs=89.7
Q ss_pred CcceeecCCCCcCccccCCcCCCCCCCcccchhhHHHHHHHHhhcCCcEEEEecccchhccCcchHHHHHHHHHhcCCCe
Q 046469 423 DVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSRLVHMKYQ 502 (521)
Q Consensus 423 ~vDlL~ggpPCQ~fS~an~~~~~~~~~~d~r~~L~~~~lrii~~~rP~~~l~ENV~gl~~~~~~~~~~~il~~l~~lGY~ 502 (521)
++|+|+||||||+||.||+. ++.+|+++.|+++++++|+.++|++|+||||+|+++.+++..++.+++.|+++||+
T Consensus 62 ~~D~l~~gpPCq~fS~ag~~----~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 62 DIDLLTGGFPCQPFSIAGKR----KGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred CCCEEEeCCCChhhhHHhhc----CCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcE
Confidence 57999999999999999973 45678999999999999999999999999999999988888999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCC
Q 046469 503 ARFGIIAAGCYGLPQFRLR 521 (521)
Q Consensus 503 v~~~vlna~~yGvPQ~R~R 521 (521)
+.+.+|||++||+||+|+|
T Consensus 138 ~~~~~l~a~~~GvPQ~R~R 156 (275)
T cd00315 138 VYWKLLNASDYGVPQNRER 156 (275)
T ss_pred EEEEEEEHHHcCCCCCCcE
Confidence 9999999999999999998
No 5
>PRK10458 DNA cytosine methylase; Provisional
Probab=100.00 E-value=5.4e-35 Score=313.51 Aligned_cols=180 Identities=24% Similarity=0.313 Sum_probs=142.6
Q ss_pred CCCCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC---CCCceeecchHHHHHHHHHHHHHh
Q 046469 200 PHKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH---PEAQVRNEAAEDFLELVKEWQKLC 276 (521)
Q Consensus 200 ~~~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~---~~~~~~~~~~~~~~~~~~~~~~~~ 276 (521)
....+++++||||||||+++||+ .||++ +++|+|+|+.|++||++|| |++.++++|+.++....
T Consensus 84 ~~~~~~~~iDLFsGiGGl~lGfe----~aG~~--~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~------- 150 (467)
T PRK10458 84 HPHYAFRFIDLFAGIGGIRRGFE----AIGGQ--CVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSH------- 150 (467)
T ss_pred CcCCCceEEEeCcCccHHHHHHH----HcCCE--EEEEEechHHHHHHHHHHcCCCCccceeccChhhCcccc-------
Confidence 34568999999999999999998 89976 8999999999999999998 66777888877543000
Q ss_pred hhhhhhhhhhhhhhhcccccccccCCCCCCccccCCCCCCccCCCCCCCcccccccCCCccccCCCCCCCCCCCCCCcce
Q 046469 277 KRFAVNIVERENKQRSMSQRVTRNSVNSPSITRNSVDSPKVTGNSVDSPRVTRSSVNSPRVTRNSVNSPRDVDIPPGEYE 356 (521)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (521)
.... .
T Consensus 151 -----------------~~~~-----------------------------------------------------~----- 155 (467)
T PRK10458 151 -----------------KEGV-----------------------------------------------------S----- 155 (467)
T ss_pred -----------------cccc-----------------------------------------------------c-----
Confidence 0000 0
Q ss_pred eeeEeeeecCCCCcccCCcceeEEEEccCCCCCCCcccccccCCChhhHHHHHhcccccccCCCCCCcceeecCCCCcCc
Q 046469 357 VARIVDICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNGFKSKILPLPGDVDVICGGPPCQGI 436 (521)
Q Consensus 357 v~~l~~~~~g~~~~~~~~~l~~~v~w~gy~~~~d~~ep~e~~~~~~~~I~~~v~~~~~~~~~~~~~~vDlL~ggpPCQ~f 436 (521)
...+... +....+++|||+||||||+|
T Consensus 156 ---------------------------------------------~~~~~~~--------~~~~~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 156 ---------------------------------------------DEEAAEH--------IRQHIPDHDVLLAGFPCQPF 182 (467)
T ss_pred ---------------------------------------------hhhhhhh--------hhccCCCCCEEEEcCCCCcc
Confidence 0000000 00011367999999999999
Q ss_pred cccCCcCCC----CCCC-cccchhhHHHHHHHHhhcCCcEEEEecccchhccCcchHHHHHHHHHhcCCCeEE-------
Q 046469 437 SGYNRFRNV----DSPL-DDERNRQIVIFMDIVEFLKPKYVLMENVVDILKFDKASLGRYALSRLVHMKYQAR------- 504 (521)
Q Consensus 437 S~an~~~~~----~~~~-~d~r~~L~~~~lrii~~~rP~~~l~ENV~gl~~~~~~~~~~~il~~l~~lGY~v~------- 504 (521)
|.||+.+.. ..+. .++|+.|+++++|+|+.++|++||||||+||++.+++..++.|+..|.++||.+.
T Consensus 183 S~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~ 262 (467)
T PRK10458 183 SLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAIFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGP 262 (467)
T ss_pred chhcccccccccccccccCCccccHHHHHHHHHHHhCCCEEEEeCcHhhhcccccHHHHHHHHHHHHcCCeEEeccccCc
Confidence 999975421 1233 4789999999999999999999999999999999888999999999999999995
Q ss_pred --EEEEecCCCCCCCCCCC
Q 046469 505 --FGIIAAGCYGLPQFRLR 521 (521)
Q Consensus 505 --~~vlna~~yGvPQ~R~R 521 (521)
+.||||.+| +||+|+|
T Consensus 263 ~~~~vlna~~f-VPQ~R~R 280 (467)
T PRK10458 263 DDPKIIDGKHF-LPQHRER 280 (467)
T ss_pred ccceEeehhhC-CCccCcE
Confidence 699999999 9999998
No 6
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=2.1e-33 Score=268.01 Aligned_cols=171 Identities=20% Similarity=0.324 Sum_probs=143.0
Q ss_pred EEECCEEEeCCCEEEEecC-------------------CCccEEEEEeEEeeCCCC------eEEEEEEEEeeccccccc
Q 046469 46 ARIGECIFDLGDCAYIKGE-------------------GTQKHIGKILEFFKTTDG------EEYFRVQWFYRAEDTVMK 100 (521)
Q Consensus 46 ~~vdG~~Y~vGD~VyV~~~-------------------~~p~~IarI~~i~~~~~g------~~~v~v~WFyRpedt~~~ 100 (521)
|.++|++|++||+|||.++ ..|++||||.+|+..+++ ..+|+|+|||||+||..
T Consensus 1 f~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~- 79 (202)
T cd04708 1 FVYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSP- 79 (202)
T ss_pred CcCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCc-
Confidence 4689999999999999984 358999999999986654 68999999999999955
Q ss_pred cccCCCCcceeEEeCCccccccceeeeeeEEEecCCCCCCCCCCCCCCcEEEeeeeecCCcEEEcCCCCCc-ccCCCCCC
Q 046469 101 EAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDFYFDMEYCVEYSTFRTLLTGKI-HDLSLPSC 179 (521)
Q Consensus 101 ~~~~~~~~rELF~S~~~d~~pv~~I~GKC~V~~~~~~~~~~~~~~~~~dFyc~~~Yd~~~~~f~~lp~~~~-~~~S~~~~ 179 (521)
..++.++.+|||+|++.+++|+++|.|||.|++..++.........+++|||+..||+.++.|+.||++.+ ..+|....
T Consensus 80 ~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~~~~~~~~Ffc~~~Yd~~tg~f~~lP~~~~~~~~~~~~~ 159 (202)
T cd04708 80 EKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDAPVIFEHVFFCELLYDPAKGSLKQLPPNIKEEAYSTGAS 159 (202)
T ss_pred ccceecCceeEEEeccceeechhHcceEEEEEecCcchhhhccccCCCceEEEEEEcCCCCccCCCCchhcccccccccc
Confidence 35677799999999999999999999999999999988775555669999999999999999999999987 66677776
Q ss_pred CCCCCCCCCCcc--c---cCCCCCCCCCCcccEEeeeccCChh
Q 046469 180 TETVPTTATSTF--F---ENMPNHGPHKAELALLDLYSGCGGM 217 (521)
Q Consensus 180 ~~~~~~~k~k~~--~---~~~~~~~~~~~~l~vldLFsG~GG~ 217 (521)
+.+.+++|+|+. . .......++.++|..||+||||||+
T Consensus 160 ~~~~~k~kgkgk~~~~~~~~~~~~~~~~~~LaTLDIFAGCGGL 202 (202)
T cd04708 160 DSALRKRKGKGKGDSESDSEAPVKAPKENRLATLDIFAGCGGL 202 (202)
T ss_pred ccccccCCCCCcCccccccccccccccccccceeeeecccCCC
Confidence 666655555553 1 1123345678999999999999996
No 7
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.97 E-value=2.1e-30 Score=231.13 Aligned_cols=119 Identities=55% Similarity=1.037 Sum_probs=111.1
Q ss_pred CEEEeCCCEEEEec-CCCccEEEEEeEEeeCCCCeEEEEEEEEeeccccccccccCCCCcceeEEeCCccccccceeeee
Q 046469 50 ECIFDLGDCAYIKG-EGTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISK 128 (521)
Q Consensus 50 G~~Y~vGD~VyV~~-~~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~~d~~pv~~I~GK 128 (521)
|+.|++||+|||.+ +++|+|||||++||++.+|..+|+|+|||||+||++++..+.++++|||+|+++|++|+++|+||
T Consensus 1 g~~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I~~K 80 (122)
T cd04716 1 GITYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLISK 80 (122)
T ss_pred CcEEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhheeee
Confidence 68899999999999 66899999999999999999999999999999998876578899999999999999999999999
Q ss_pred eEEEecCCCCCC--CCCCCCCCcEEEeeeeecCCcEEEcCCC
Q 046469 129 VIVAQIPPKIGL--KSNSIPSSDFYFDMEYCVEYSTFRTLLT 168 (521)
Q Consensus 129 C~V~~~~~~~~~--~~~~~~~~dFyc~~~Yd~~~~~f~~lp~ 168 (521)
|.|++++++... +....+++||||++.|+..+++|++||+
T Consensus 81 c~V~~~~~~~~~~~~~~~~~~~df~c~~~Y~~~~~tF~~~~~ 122 (122)
T cd04716 81 VKILQVPPNVGTKRKKPNSEKCDYYYDMEYCVPYSTFQTLRN 122 (122)
T ss_pred eEEEEeCCCCCcccccccCCCceEEEeeEeccchhheEeCCC
Confidence 999999998877 5677789999999999999999999984
No 8
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.94 E-value=2.6e-26 Score=211.56 Aligned_cols=130 Identities=23% Similarity=0.407 Sum_probs=112.8
Q ss_pred CcceeEEEEEECCEEEeCCCEEEEec-CCCccEEEEEeEEeeCCCCeEEEEEEEEeecccccccccc--CCCCcceeEEe
Q 046469 38 NVECHYAQARIGECIFDLGDCAYIKG-EGTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKEAA--DFHDRKRLFYS 114 (521)
Q Consensus 38 ~~r~~Y~~~~vdG~~Y~vGD~VyV~~-~~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~~~--~~~~~rELF~S 114 (521)
+++++|+++.++|++|++||+|||.+ ++.++|||+|.+||+..++.++++|+|||||+||...... ..+++||||+|
T Consensus 6 ~~~~~y~s~~~dg~~y~vgD~Vlv~~~~~~~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~S 85 (146)
T cd04713 6 KKKCHYTSFEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFYS 85 (146)
T ss_pred cceeeeeeEEECCEEEECCCEEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEEe
Confidence 46899999999999999999999998 5688999999999999889999999999999999653222 23478999999
Q ss_pred CCccccccceeeeeeEEEecCCCCCCCCCCCCCCcEEEeeeeecCCcEEEcCCC
Q 046469 115 TVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDFYFDMEYCVEYSTFRTLLT 168 (521)
Q Consensus 115 ~~~d~~pv~~I~GKC~V~~~~~~~~~~~~~~~~~dFyc~~~Yd~~~~~f~~lp~ 168 (521)
.+.|++|+++|.|||.|++.+++..... ....+.|||++.||...++|.+|-.
T Consensus 86 ~~~d~~~~~~I~gkc~V~~~~~~~~~~~-~~~~~~F~cr~~yD~~~~~~~~~~~ 138 (146)
T cd04713 86 FHRDEVPAESVLHPCKVAFVPKGKQIPL-RKGHSGFIVRRVYDNVNKKLWKLTD 138 (146)
T ss_pred CCCCcCCHHHCcceeEEEECCccccCCc-cCCCCeEEEEEEEcCCCCcEeeccc
Confidence 9999999999999999999988775432 2256789999999999999998763
No 9
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.94 E-value=2.1e-26 Score=205.75 Aligned_cols=117 Identities=26% Similarity=0.499 Sum_probs=106.7
Q ss_pred CEEEeCCCEEEEec-C-CCccEEEEEeEEeeCCCCeEEEEEEEEeeccccccccccCCCCcceeEEeCCccccccceeee
Q 046469 50 ECIFDLGDCAYIKG-E-GTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIIS 127 (521)
Q Consensus 50 G~~Y~vGD~VyV~~-~-~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~~d~~pv~~I~G 127 (521)
|..|++||+|||.+ + +.++|||||.+||++.+|..+|+|+|||||+||.+. +.+.+.++|||+|++.|++|+++|.|
T Consensus 1 g~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~~-~~~~~~~~Evfls~~~d~~~~~~I~~ 79 (121)
T cd04717 1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETFHE-PTRKFYKNEVFKSPLYETVPVEEIVG 79 (121)
T ss_pred CCEEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHccCC-CccccccCceEEcCccccccHHHhcC
Confidence 67899999999998 3 378999999999999999999999999999999776 57789999999999999999999999
Q ss_pred eeEEEecCCCCCCCCCCCCCCc-EEEeeeeecCCcEEEcCC
Q 046469 128 KVIVAQIPPKIGLKSNSIPSSD-FYFDMEYCVEYSTFRTLL 167 (521)
Q Consensus 128 KC~V~~~~~~~~~~~~~~~~~d-Fyc~~~Yd~~~~~f~~lp 167 (521)
||.|+..++|.+.++....+++ |+|++.||+..+.|+++.
T Consensus 80 kc~Vl~~~~y~~~~p~~~~~~dvy~ce~~y~~~~~~~~~~k 120 (121)
T cd04717 80 KCAVMDVKDYIKGRPTEISEEDVYVCESRYNESAKSFKKIK 120 (121)
T ss_pred eeEEEehHHHhcCCCCCCCCCCEEEEeEEECcccccEeccc
Confidence 9999999999988877777677 459999999999999874
No 10
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=1.5e-25 Score=209.28 Aligned_cols=125 Identities=20% Similarity=0.236 Sum_probs=110.6
Q ss_pred CEEEeCCCEEEEec-CCCccEEEEEeEEeeCCCCeEEEEEEEEeecccccccc---------------------ccCCCC
Q 046469 50 ECIFDLGDCAYIKG-EGTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKE---------------------AADFHD 107 (521)
Q Consensus 50 G~~Y~vGD~VyV~~-~~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~---------------------~~~~~~ 107 (521)
+.+|++||+|||.+ ++.||+||||++||++.+|.+.++|+|||||+|+.... ..+.++
T Consensus 1 ~~~yrvGD~Vy~~~~~~~Py~I~rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd04709 1 ANMYRVGDYVYFESSPNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLR 80 (164)
T ss_pred CcEEecCCEEEEECCCCCCCEEEEEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccC
Confidence 36899999999998 77799999999999999999999999999999984310 134568
Q ss_pred cceeEEeCCccccccceeeeeeEEEecCCCCCCCCCCCCCCcEEEeeeeecCCcEEEcCCCCCcccC
Q 046469 108 RKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDFYFDMEYCVEYSTFRTLLTGKIHDL 174 (521)
Q Consensus 108 ~rELF~S~~~d~~pv~~I~GKC~V~~~~~~~~~~~~~~~~~dFyc~~~Yd~~~~~f~~lp~~~~~~~ 174 (521)
.||||+|++.|++|+++|+|||.|++++++.....+...++.|||+..||+.+++|..-..+++.+.
T Consensus 81 ~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~~~~~~d~Ff~~~~YDP~~k~l~~~~geirvg~ 147 (164)
T cd04709 81 HRELFLSRQVETLPATHIRGKCSVTLLNDTESARSYLAREDTFFYSLVYDPEQKTLLADQGEIRVGP 147 (164)
T ss_pred cceeEEecccccccHHHeeeeEEEEEehhhhhhhhccCCCCEEEEEEEECCCCCeecccceeEEecC
Confidence 9999999999999999999999999999999886666778999999999999999998887777655
No 11
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.92 E-value=1.6e-25 Score=200.20 Aligned_cols=111 Identities=24% Similarity=0.381 Sum_probs=96.9
Q ss_pred CEEEeCCCEEEEec-C-CCccEEEEEeEEeeCCCCeEEEEEEEEeeccccccccccCCCCcceeEEeCCccccccceeee
Q 046469 50 ECIFDLGDCAYIKG-E-GTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIIS 127 (521)
Q Consensus 50 G~~Y~vGD~VyV~~-~-~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~~d~~pv~~I~G 127 (521)
|++|++||+|||++ + +.++|||||.+||++.+|+++|+|+|||||+||.++ ..+.++++|||+|++.|++|+++|.|
T Consensus 1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~-~~~~~~~~EvF~S~~~d~~~~~~I~g 79 (121)
T cd04714 1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGG-RKPNHGEKELFASDHQDENSVQTIEH 79 (121)
T ss_pred CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCc-ccccCCCCceEecCCcccccHHHhCc
Confidence 57899999999998 3 378999999999999899999999999999999776 56679999999999999999999999
Q ss_pred eeEEEecCCCCCCCCCC---C-CCCcEEEeeeeecCCc
Q 046469 128 KVIVAQIPPKIGLKSNS---I-PSSDFYFDMEYCVEYS 161 (521)
Q Consensus 128 KC~V~~~~~~~~~~~~~---~-~~~dFyc~~~Yd~~~~ 161 (521)
||.|+++++|.+..... . .++.|+|++.||+...
T Consensus 80 kc~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~yn~~~~ 117 (121)
T cd04714 80 KCYVLTFAEYERLARVKKKPQDGVDFYYCAGTYNPDTG 117 (121)
T ss_pred ccEEEehhHheecccccCCCCcCCCEEEEeccCCCCcC
Confidence 99999999998764332 3 3445669999999654
No 12
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.92 E-value=3.6e-25 Score=200.97 Aligned_cols=116 Identities=21% Similarity=0.347 Sum_probs=101.6
Q ss_pred EEECCEEEeCCCEEEEec--CCCccEEEEEeEEeeCCC------------CeEEEEEEEEeeccccccccccCCCCccee
Q 046469 46 ARIGECIFDLGDCAYIKG--EGTQKHIGKILEFFKTTD------------GEEYFRVQWFYRAEDTVMKEAADFHDRKRL 111 (521)
Q Consensus 46 ~~vdG~~Y~vGD~VyV~~--~~~p~~IarI~~i~~~~~------------g~~~v~v~WFyRpedt~~~~~~~~~~~rEL 111 (521)
+..+|..|++||+|||.+ .++|+|||||++|+..++ +..+|+|+|||||+||... ..+++|||
T Consensus 5 ~~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~---~~~d~rel 81 (135)
T cd04710 5 VLKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRR---VVADSRLL 81 (135)
T ss_pred EccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCc---ccCCceEE
Confidence 345899999999999998 679999999999998642 3368999999999998332 26899999
Q ss_pred EEeCCccccccceeeeeeEEEecCCCCCCCCCCCCCCcEEEeeeeecCCcEEE
Q 046469 112 FYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDFYFDMEYCVEYSTFR 164 (521)
Q Consensus 112 F~S~~~d~~pv~~I~GKC~V~~~~~~~~~~~~~~~~~dFyc~~~Yd~~~~~f~ 164 (521)
|+|+|.|++|+++|+|||.|++.+++.....+...++.|||+..||+..++|.
T Consensus 82 f~S~h~d~~p~~si~gKC~V~~~~di~~l~~~~~~~~~Fyf~~lyD~~~~r~~ 134 (135)
T cd04710 82 YASMHSDICPIGSVRGKCTVRHRDQIPDLEEYKKRPNHFYFDQLFDRYILRYY 134 (135)
T ss_pred EEEeeEeeechHHEEeEEEEEEecccchhhhhccCCCEEEEEeeeCcchhhcc
Confidence 99999999999999999999999998877677777999999999999888774
No 13
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.91 E-value=1.2e-24 Score=192.16 Aligned_cols=114 Identities=25% Similarity=0.477 Sum_probs=100.2
Q ss_pred EEEeCCCEEEEecC--CCccEEEEEeEEeeCCCCe--EEEEEEEEeeccccccccccCCCCcceeEEeCCccccccceee
Q 046469 51 CIFDLGDCAYIKGE--GTQKHIGKILEFFKTTDGE--EYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCII 126 (521)
Q Consensus 51 ~~Y~vGD~VyV~~~--~~p~~IarI~~i~~~~~g~--~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~~d~~pv~~I~ 126 (521)
++|++||+|||.++ +.+++||+|++||++.+++ ++++|+|||||+|| . ..+...+||||+|++++++|+++|+
T Consensus 1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~-~--~~~~~~~~Elf~s~~~~~~~~~~I~ 77 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDT-S--LGKTFSPRELFLSDHCDDIPVESIR 77 (119)
T ss_dssp EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGS-T--TGGHSCTTEEEEEEEEEEEEGGGEE
T ss_pred CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECcccc-c--ccccCCCCEEEEECcEeEEehhhEE
Confidence 58999999999993 5899999999999998887 99999999999999 2 2445667999999999999999999
Q ss_pred eeeEEEecCCCCCCCCCCC-CCCcEEEeeeeecCCcEEEcCC
Q 046469 127 SKVIVAQIPPKIGLKSNSI-PSSDFYFDMEYCVEYSTFRTLL 167 (521)
Q Consensus 127 GKC~V~~~~~~~~~~~~~~-~~~dFyc~~~Yd~~~~~f~~lp 167 (521)
|||.|++.+++.+...... .++.|||++.||+..++|.++|
T Consensus 78 gkc~V~~~~~~~~~~~~~~~~~~~F~cr~~yd~~~~~f~~~~ 119 (119)
T PF01426_consen 78 GKCNVLHLEDYEQARPYGKEEPDTFFCRYAYDPQKKRFKKLP 119 (119)
T ss_dssp EEEEEEEHHHHTTGCCHCHHTTTEEEEEEEEETTTTEEEE-S
T ss_pred eeeEEEECCccccccccccCCCCEEEEEEEEeCCcCEEeCCC
Confidence 9999999998886644432 7889999999999999999886
No 14
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.91 E-value=2e-24 Score=190.81 Aligned_cols=115 Identities=29% Similarity=0.506 Sum_probs=102.5
Q ss_pred EEeCCCEEEEec-C-CCccEEEEEeEEeeCCCCe-EEEEEEEEeeccccccccccCCCCcceeEEeCCccccccceeeee
Q 046469 52 IFDLGDCAYIKG-E-GTQKHIGKILEFFKTTDGE-EYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISK 128 (521)
Q Consensus 52 ~Y~vGD~VyV~~-~-~~p~~IarI~~i~~~~~g~-~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~~d~~pv~~I~GK 128 (521)
+|++||+|||.+ + .++++||+|.+||++.++. ++++|+|||||+||.++ ..+.+++||||+|++++++|+++|.||
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~-~~~~~~~~Elf~s~~~~~i~~~~I~~k 79 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYRPEETVLE-KAALFDKNEVFLSDEYDTVPLSDIIGK 79 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEChhhcccc-ccccCCCcceEEEccCccCChHHeeeE
Confidence 489999999999 3 5799999999999999888 89999999999999776 456789999999999999999999999
Q ss_pred eEEEecCCCCCCCCCCC--CCCcEEEeeeeecCCcEEEcCC
Q 046469 129 VIVAQIPPKIGLKSNSI--PSSDFYFDMEYCVEYSTFRTLL 167 (521)
Q Consensus 129 C~V~~~~~~~~~~~~~~--~~~dFyc~~~Yd~~~~~f~~lp 167 (521)
|.|++.+++....+... .++.|||++.||...+.|.++|
T Consensus 80 c~V~~~~~~~~~~~~~~~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 80 CNVLSKSDYPGLRPEGKIGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred EEEEEcchhcccccccCCCCCCeEEEEEEEccccCcccCCC
Confidence 99999999887644333 5788999999999999998875
No 15
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.91 E-value=2.7e-24 Score=190.00 Aligned_cols=116 Identities=31% Similarity=0.596 Sum_probs=104.0
Q ss_pred CEEEeCCCEEEEec-C---CCccEEEEEeEEeeCCCCeEEEEEEEEeeccccccccccCCCCcceeEEeCCcccccccee
Q 046469 50 ECIFDLGDCAYIKG-E---GTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCI 125 (521)
Q Consensus 50 G~~Y~vGD~VyV~~-~---~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~~d~~pv~~I 125 (521)
|.+|++||+|||.+ + ++++|||+|.+||++.++.++++|+|||||+||.+. ....+.+||||+|++++++|+++|
T Consensus 1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~-~~~~~~~~Elf~s~~~~~i~v~~I 79 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKG-LSPFALRRELFLSDHLDEIPVESI 79 (123)
T ss_pred CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEchhHhccc-cccccccceeEEecCccccCHHHh
Confidence 67999999999999 3 378999999999999999999999999999999765 455789999999999999999999
Q ss_pred eeeeEEEecCCCCCCC--CCCCCCCcEEEeeeeecCCcEEEcC
Q 046469 126 ISKVIVAQIPPKIGLK--SNSIPSSDFYFDMEYCVEYSTFRTL 166 (521)
Q Consensus 126 ~GKC~V~~~~~~~~~~--~~~~~~~dFyc~~~Yd~~~~~f~~l 166 (521)
.|||.|++.+++.... .....++.|||++.||..+.+|+.+
T Consensus 80 ~gkc~V~~~~~~~~~~~~~~~~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 80 IGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred ccccEEEechHhhccccccccCCCCeEEEEEEECcCcceEEeC
Confidence 9999999999888653 4455678899999999999999875
No 16
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.90 E-value=2.1e-23 Score=194.17 Aligned_cols=129 Identities=22% Similarity=0.328 Sum_probs=107.3
Q ss_pred cCcceeEEEEEECCEEEeCCCEEEEecCCCccEEEEEeEEeeCCC--CeEEEEEEEEeecccccccccc-CCCCcceeEE
Q 046469 37 SNVECHYAQARIGECIFDLGDCAYIKGEGTQKHIGKILEFFKTTD--GEEYFRVQWFYRAEDTVMKEAA-DFHDRKRLFY 113 (521)
Q Consensus 37 ~~~r~~Y~~~~vdG~~Y~vGD~VyV~~~~~p~~IarI~~i~~~~~--g~~~v~v~WFyRpedt~~~~~~-~~~~~rELF~ 113 (521)
.++++||+++.++|+.|++||||||++++.++|||+|.+||++.+ |.++++|+|||||+||...... ..+.+||||+
T Consensus 14 ~~~~~~Y~s~~~~g~~y~lGD~Vlv~s~~~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~~~~~~~~nEvFl 93 (159)
T cd04715 14 KKDGQFYRSFTYDGVEYRLYDDVYVHNGDSEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGEPKRHINEVFL 93 (159)
T ss_pred cCCceEEEEEEECCEEEeCCCEEEEeCCCCCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccccCcccCCCcEEE
Confidence 367789999999999999999999999668999999999999876 8999999999999999653222 3578999999
Q ss_pred eCCc-----cccccceeeeeeEEEecCCCCCC-CC--CCCCCCcEEEeeeeecCCcEEEc
Q 046469 114 STVM-----NDNPVDCIISKVIVAQIPPKIGL-KS--NSIPSSDFYFDMEYCVEYSTFRT 165 (521)
Q Consensus 114 S~~~-----d~~pv~~I~GKC~V~~~~~~~~~-~~--~~~~~~dFyc~~~Yd~~~~~f~~ 165 (521)
|.+. +++|+++|.|||.|+++++|... .+ ......+|.|...|++..+.-.+
T Consensus 94 S~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~~~~~~s~~~~~~~~~~f~~~f~~~~~~~~~ 153 (159)
T cd04715 94 ACGRGEGLANINLLESIIGKCNVVCISEDFRNPQPSDGIPTSADFLFPCNFDVGRCVIVD 153 (159)
T ss_pred ecCcCccccccCcHHHccceeEEEEehHhhhCCCCcCCccccCcceeeeEEEecCceecc
Confidence 9875 67999999999999999998865 33 34456677777888886554443
No 17
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.89 E-value=4.1e-23 Score=183.66 Aligned_cols=112 Identities=25% Similarity=0.378 Sum_probs=98.7
Q ss_pred CEEEeCCCEEEEec--CCCccEEEEEeEEeeCCCCeEEEEEEEEeeccccccccccCCCCcceeEEeCCccccccceeee
Q 046469 50 ECIFDLGDCAYIKG--EGTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIIS 127 (521)
Q Consensus 50 G~~Y~vGD~VyV~~--~~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~~d~~pv~~I~G 127 (521)
|..|.+||||+|++ +++|+|||||+.||++.+|.+|||++|||||+||++++ .++++|||+|++|+++++++|.+
T Consensus 1 g~~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~~g~k~~h~rWf~Rg~dTVlG~---~~~~kEvFlsd~c~d~~l~~I~~ 77 (124)
T cd04760 1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDSIGGKMFHAHWFCRGSDTVLGE---TSDPLELFLVDECEDMALSSIHG 77 (124)
T ss_pred CCEEecCCEEEEecCCCCCCcEEEEEhhheecCCCCcEEEEEEEEECCcccccc---cCCCcEEEeecccCCcchHHhee
Confidence 57899999999998 67899999999999999999999999999999998874 48899999999999999999999
Q ss_pred eeEEEecCCCCC--------C--CCCCCCCCcEEEeeeeecCCcEEE
Q 046469 128 KVIVAQIPPKIG--------L--KSNSIPSSDFYFDMEYCVEYSTFR 164 (521)
Q Consensus 128 KC~V~~~~~~~~--------~--~~~~~~~~dFyc~~~Yd~~~~~f~ 164 (521)
||.|....+..+ . .......++|||++.||+...+|+
T Consensus 78 Kv~V~~~~p~~~w~~~~g~~~~~~~~~ddg~tffyq~~yd~~~arf~ 124 (124)
T cd04760 78 KVNVIYKAPSENWSMEGGMDEEDEIFEDDGKTFFYQKWYDPECARFE 124 (124)
T ss_pred eeEEEEeCCCcchhhhcCCCCccccccCCCCeEEEEEeeChhhhccC
Confidence 999999987622 1 344456778999999999887774
No 18
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=2.7e-22 Score=181.35 Aligned_cols=113 Identities=13% Similarity=0.253 Sum_probs=98.8
Q ss_pred EECCEEEeCCCEEEEecCCCccEEEEEeEEeeCCCCeEEEEEEEEeeccccccccccCCCCcceeEEeCCccccccceee
Q 046469 47 RIGECIFDLGDCAYIKGEGTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCII 126 (521)
Q Consensus 47 ~vdG~~Y~vGD~VyV~~~~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~~d~~pv~~I~ 126 (521)
..||.++++||||||+++++++|||+|++||++.+|.++++|+||+||+||.++.+++.+.+||||+|++.+++|+++|.
T Consensus 2 ~r~~~~i~vGD~V~v~~~~~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~I~ 81 (130)
T cd04721 2 CRNGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECID 81 (130)
T ss_pred ccCCEEEECCCEEEEeCCCCCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHHee
Confidence 56899999999999999667789999999999999999999999999999977533344899999999999999999999
Q ss_pred eeeEEEecCCCCCCC--CCC-CCCCcEEEeeeeecC
Q 046469 127 SKVIVAQIPPKIGLK--SNS-IPSSDFYFDMEYCVE 159 (521)
Q Consensus 127 GKC~V~~~~~~~~~~--~~~-~~~~dFyc~~~Yd~~ 159 (521)
|||+|+..++|.+.. +.. ...++|+|+..||..
T Consensus 82 gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~~~~d~~ 117 (130)
T cd04721 82 GLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNN 117 (130)
T ss_pred eeeEECCHHHHhhhhccccCccccccEEEEEEecCC
Confidence 999999999998763 222 335689999999885
No 19
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.86 E-value=2e-21 Score=175.69 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=96.4
Q ss_pred CCEEEeCCCEEEEec-CC-----------CccEEEEEeEEeeCCCCeEEEEEEEEeeccccccccccCCCCcceeEEeCC
Q 046469 49 GECIFDLGDCAYIKG-EG-----------TQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTV 116 (521)
Q Consensus 49 dG~~Y~vGD~VyV~~-~~-----------~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~ 116 (521)
.|..|++||+|+|.+ ++ .++||++|+.||+..+|.++|+++|||||+||+++. .+++||||+|++
T Consensus 2 ~~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~---~~~~~ElFLSd~ 78 (130)
T cd04712 2 HGLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGN---YANERELFLTNE 78 (130)
T ss_pred CCCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecCCCceEEEEEEEEcchhccccc---cCCCceEEEecc
Confidence 578899999999999 32 389999999999999999999999999999998874 789999999999
Q ss_pred ccccccc----eeeeeeEEEecCCCCCCCCCCCCCCcEEEeeeeecCCcEEEcCC
Q 046469 117 MNDNPVD----CIISKVIVAQIPPKIGLKSNSIPSSDFYFDMEYCVEYSTFRTLL 167 (521)
Q Consensus 117 ~d~~pv~----~I~GKC~V~~~~~~~~~~~~~~~~~dFyc~~~Yd~~~~~f~~lp 167 (521)
|+++|++ .|.+||.|........ ...++.|||...|++..+.|.+||
T Consensus 79 c~~~~~~~~~~~I~~k~~V~~~~~~~~----~~~~~~F~r~syy~~e~~~F~~l~ 129 (130)
T cd04712 79 CTCLELDLLSTEIKGVHKVDWSGTPWG----KGLPEFFVRQSYYWPERGAFTSLK 129 (130)
T ss_pred ccccccccccceeEEEEEEEEecCcCC----cCCCCEEEEEEEECccCCceEcCC
Confidence 9999999 9999999998875442 223444556677777999999987
No 20
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.84 E-value=3.5e-21 Score=172.11 Aligned_cols=109 Identities=23% Similarity=0.285 Sum_probs=91.5
Q ss_pred EEec----CCCccEEEEEeEEeeCCCC-------eEEEEEEEEeeccccccccc-cCCCCcceeEEeCCccccccceeee
Q 046469 60 YIKG----EGTQKHIGKILEFFKTTDG-------EEYFRVQWFYRAEDTVMKEA-ADFHDRKRLFYSTVMNDNPVDCIIS 127 (521)
Q Consensus 60 yV~~----~~~p~~IarI~~i~~~~~g-------~~~v~v~WFyRpedt~~~~~-~~~~~~rELF~S~~~d~~pv~~I~G 127 (521)
||++ .++||+||||++|...+++ .++++|+|||||+||+.+.. +.+.+-||||+|+|.+++|+++|+|
T Consensus 15 ~~~~~~~d~~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~G 94 (137)
T cd04711 15 YIKGSNLDAPEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQG 94 (137)
T ss_pred ccccccCCCCCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccc
Confidence 5555 6899999999999876532 57899999999999965422 3567789999999999999999999
Q ss_pred eeEEEecCCCCC-CCCCC-CCCCcEEEeeeeecCCcEEEcCCC
Q 046469 128 KVIVAQIPPKIG-LKSNS-IPSSDFYFDMEYCVEYSTFRTLLT 168 (521)
Q Consensus 128 KC~V~~~~~~~~-~~~~~-~~~~dFyc~~~Yd~~~~~f~~lp~ 168 (521)
||+|++..+... .+.+. ..+++|||+..|+..++.|+++|+
T Consensus 95 KC~V~~~~di~~s~~~y~~~gpd~Fyf~~~Y~a~t~~F~d~p~ 137 (137)
T cd04711 95 RCTVEYGEDLPESVQEYSGGGPDRFYFLEAYNAKTKSFEDPPN 137 (137)
T ss_pred eEEEEeccccchhHHHHhcCCCcceEEhhhhccccCcccCCCC
Confidence 999998887664 34554 678999999999999999999984
No 21
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=99.84 E-value=2.1e-21 Score=187.66 Aligned_cols=92 Identities=21% Similarity=0.369 Sum_probs=83.3
Q ss_pred CcceeecCCCCcCccccCCcCCCCCCCcccchhhHHHHHHHHhhcC--CcEEEEecccchhccCcchHHHHHHHHHhcCC
Q 046469 423 DVDVICGGPPCQGISGYNRFRNVDSPLDDERNRQIVIFMDIVEFLK--PKYVLMENVVDILKFDKASLGRYALSRLVHMK 500 (521)
Q Consensus 423 ~vDlL~ggpPCQ~fS~an~~~~~~~~~~d~r~~L~~~~lrii~~~r--P~~~l~ENV~gl~~~~~~~~~~~il~~l~~lG 500 (521)
+.|++..|||||+|...|++ +...|+|...|.+++.++-.++ |+|++||||+|+-++. ....+++.|+..|
T Consensus 69 ~~~m~lMSPpCQPfTRiG~q----~D~~D~Rs~aflhil~~lP~~q~LPeYIL~ENVkGFE~S~---ar~~~i~~lencG 141 (338)
T KOG0919|consen 69 QANMLLMSPPCQPFTRIGLQ----RDTEDKRSDAFLHILGLLPECQELPEYILMENVKGFESSQ---ARNQFIESLENCG 141 (338)
T ss_pred ccceEeeCCCCCchhhhccc----ccccCchhHHHHHHHhhhhhhhhhhHHHHHhhcccchhhh---HHHHHHHHHHhcC
Confidence 45899999999999999974 5578999999999999999986 9999999999998754 4677899999999
Q ss_pred CeEEEEEEecCCCCCCCCCCC
Q 046469 501 YQARFGIIAAGCYGLPQFRLR 521 (521)
Q Consensus 501 Y~v~~~vlna~~yGvPQ~R~R 521 (521)
|+.+.++|....||+|.+|-|
T Consensus 142 f~~~EfiLsPtqfniPNsR~R 162 (338)
T KOG0919|consen 142 FHWREFILSPTQFNIPNSRYR 162 (338)
T ss_pred chhhheeccccccCCCCcchh
Confidence 999999999999999999987
No 22
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.82 E-value=1.1e-21 Score=178.34 Aligned_cols=97 Identities=19% Similarity=0.386 Sum_probs=88.0
Q ss_pred CccEEEEEeEEeeCCCCeEEEEEEEEeeccccccccccCCCCcceeEEeCCccccccceeeeeeEEEecCCCCCCCCCCC
Q 046469 66 TQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSI 145 (521)
Q Consensus 66 ~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~~d~~pv~~I~GKC~V~~~~~~~~~~~~~~ 145 (521)
..+|||||++||++. |+.+|+|+|||||+||.++ +++.+..+|||+|+++|++|+++|.|||.|+.+++|.+. ...
T Consensus 51 ~~~~vArIekiW~~~-G~~~~~grWy~rPEET~~g-r~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~--e~~ 126 (148)
T cd04718 51 GDLWLARIEKLWEEN-GTYWYAARWYTLPEETHMG-RQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDA--SND 126 (148)
T ss_pred CchHHHHHHHHHhcc-CceEEEEEEEeCchhccCc-cccccccceeeeccccccccHHHHhcccEEcCHHHcccc--cCC
Confidence 468999999999986 9999999999999999777 688899999999999999999999999999999999853 344
Q ss_pred CCCcEEEeeeeecCCcEEEcC
Q 046469 146 PSSDFYFDMEYCVEYSTFRTL 166 (521)
Q Consensus 146 ~~~dFyc~~~Yd~~~~~f~~l 166 (521)
.+|+|||++.||..+++|+++
T Consensus 127 g~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 127 GDDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred CCceEEEEEEEhhhcCceeec
Confidence 677788999999999999986
No 23
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.74 E-value=1.1e-17 Score=159.19 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=100.8
Q ss_pred EEEE-CCEEEeCCCEEEEec-CCCccEEEEEeEEeeCCC-CeEEEEEEEEeeccccccccccCCCC--------cceeEE
Q 046469 45 QARI-GECIFDLGDCAYIKG-EGTQKHIGKILEFFKTTD-GEEYFRVQWFYRAEDTVMKEAADFHD--------RKRLFY 113 (521)
Q Consensus 45 ~~~v-dG~~Y~vGD~VyV~~-~~~p~~IarI~~i~~~~~-g~~~v~v~WFyRpedt~~~~~~~~~~--------~rELF~ 113 (521)
-... +|..|++||+|+|++ ...++|||.|.+|+.... +.+.+.|+|||||.|+......+.++ ++|||+
T Consensus 44 l~R~~d~~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElfl 123 (179)
T cd04720 44 LARDSDGLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYL 123 (179)
T ss_pred EEEccCCeEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEE
Confidence 3444 899999999999998 568899999999998765 56799999999999994432222344 699999
Q ss_pred eCCccccccceeeeeeEEEecCCCCCCCCC-CCCCCcEEEeeeeecCCcEEEcC
Q 046469 114 STVMNDNPVDCIISKVIVAQIPPKIGLKSN-SIPSSDFYFDMEYCVEYSTFRTL 166 (521)
Q Consensus 114 S~~~d~~pv~~I~GKC~V~~~~~~~~~~~~-~~~~~dFyc~~~Yd~~~~~f~~l 166 (521)
|.+.+.+++.+|.|||+|+...+|...... .....+|||++.||+....|..+
T Consensus 124 T~~~d~i~l~~Ii~k~~Vls~~ef~~~~~~~~~~~~~F~cR~~~d~~~~~F~~~ 177 (179)
T cd04720 124 TAELSEIKLKDIIDKANVLSESEFNDLSTDDKNGERTFFCRYACEPDGEEFVWI 177 (179)
T ss_pred ecccceEEhhheeeeEEEecHHHhhhhcccccCCCceEEEEEEEeCCCCeEccc
Confidence 999999999999999999999988865333 33578999999999998888743
No 24
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.71 E-value=2.5e-17 Score=148.11 Aligned_cols=109 Identities=20% Similarity=0.390 Sum_probs=89.9
Q ss_pred EEEeCCCEEEEec-CCCccEEEEEeEEeeCCCC---eEEEEEEEEeecccccccc---ccCCCCcceeEEeCCc---ccc
Q 046469 51 CIFDLGDCAYIKG-EGTQKHIGKILEFFKTTDG---EEYFRVQWFYRAEDTVMKE---AADFHDRKRLFYSTVM---NDN 120 (521)
Q Consensus 51 ~~Y~vGD~VyV~~-~~~p~~IarI~~i~~~~~g---~~~v~v~WFyRpedt~~~~---~~~~~~~rELF~S~~~---d~~ 120 (521)
.++++||||+|.+ +.+++|||||++|++..++ ...++|||||||+|+.... .++..+++|||++++. +++
T Consensus 2 ~~i~vGd~VlI~~~d~~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i 81 (128)
T cd04719 2 LTIEVGDFVLIEGEDADGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDI 81 (128)
T ss_pred eEEecCCEEEEECCCCCCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcE
Confidence 5899999999999 4488899999999998765 5689999999999984321 2356789999999987 499
Q ss_pred ccceeeeeeEEEecCCCCCCCCC-CCCCCcEEEeeeeecC
Q 046469 121 PVDCIISKVIVAQIPPKIGLKSN-SIPSSDFYFDMEYCVE 159 (521)
Q Consensus 121 pv~~I~GKC~V~~~~~~~~~~~~-~~~~~dFyc~~~Yd~~ 159 (521)
++++|.|||.|+..++|.+.... ......||.+..|+..
T Consensus 82 ~~etI~gkc~V~~~~~y~~l~~~~~~~~~~~F~r~~~~~k 121 (128)
T cd04719 82 DAETIIGKVRVEPVEPKTDLPETKKKTGGPLFVKRYWDTK 121 (128)
T ss_pred eHHHcccEEEEEEcCCccchhhhccccCceEEEEEEeccc
Confidence 99999999999999999877432 2346778888888874
No 25
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.53 E-value=6.1e-15 Score=160.65 Aligned_cols=147 Identities=18% Similarity=0.340 Sum_probs=123.6
Q ss_pred hhcCCCCCCcccccccCcc-eeEEE-EEECCEEEeCCCEEEEec--CCCccEEEEEeEEeeCCCCeEEEEEEEEeecccc
Q 046469 22 FLHGAYSDDDEDKIVSNVE-CHYAQ-ARIGECIFDLGDCAYIKG--EGTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDT 97 (521)
Q Consensus 22 ~~~~~~~~~~~~~i~~~~r-~~Y~~-~~vdG~~Y~vGD~VyV~~--~~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt 97 (521)
.+.+..+..+...+-.+.- .++.. +.+||..|.+||+||+.+ +..++.|++|.++|++.+|+.+..++|||||++|
T Consensus 158 ~~d~e~s~~~~~~l~~~~l~~~~~~~~~i~~~~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T 237 (629)
T KOG1827|consen 158 KKDGELSMESNEELKAGGLHYHELGPVEIDGTKYIVGDYVLVQNPADNLKPIVAQIERLWKLPDGEKWPQGCWIYRPEET 237 (629)
T ss_pred ccchhhccccccccccCCCCcccCCCccccCcccccCceeeecCcccccCCceeeecccccCcccccccceeEeeCCccC
Confidence 3344555555554432222 22444 789999999999999999 4488999999999999999999999999999999
Q ss_pred ccccccCCCCcceeEEeCCccccccceeeeeeEEEecCCCCCCCCCCCCCCcEE-EeeeeecCCcEEEcCCCC
Q 046469 98 VMKEAADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDFY-FDMEYCVEYSTFRTLLTG 169 (521)
Q Consensus 98 ~~~~~~~~~~~rELF~S~~~d~~pv~~I~GKC~V~~~~~~~~~~~~~~~~~dFy-c~~~Yd~~~~~f~~lp~~ 169 (521)
+|- ..+.|..+|+|.|..+.+++++.|+|+|+|+++..|....+....+.+.| |+++|+...+.|.++-.=
T Consensus 238 ~H~-a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~dv~lcesRyn~~~K~f~kirsw 309 (629)
T KOG1827|consen 238 VHR-ADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEEDVFLCESRYNEQLKKFNKIRSW 309 (629)
T ss_pred ccc-cccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccceeeEEeeeccchhhhccccCc
Confidence 886 68899999999999999999999999999999999999888877777766 999999999998887643
No 26
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=99.47 E-value=4.4e-14 Score=148.91 Aligned_cols=129 Identities=20% Similarity=0.296 Sum_probs=107.9
Q ss_pred cceeEEEEEECCEEEeC-CCEEEEec--CCCccEEEEEeEEeeCCC-CeEEEEEEEEeecccccccccc--CCCCcceeE
Q 046469 39 VECHYAQARIGECIFDL-GDCAYIKG--EGTQKHIGKILEFFKTTD-GEEYFRVQWFYRAEDTVMKEAA--DFHDRKRLF 112 (521)
Q Consensus 39 ~r~~Y~~~~vdG~~Y~v-GD~VyV~~--~~~p~~IarI~~i~~~~~-g~~~v~v~WFyRpedt~~~~~~--~~~~~rELF 112 (521)
.++||.++.+.|..|.. +|.|.+.+ .+.|+|||+|..||.+.. ++++++|+|||||+++...... ...++||||
T Consensus 36 k~~h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF 115 (464)
T KOG1886|consen 36 KSLHFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIYAQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRELF 115 (464)
T ss_pred ccccccceeeccCcccccCcceeecCCCCCCCCeeEEEeeeeccccCCCcceecccccCCCccCCCCCCCcccCCCcccc
Confidence 46889999999988888 99999998 578999999999998876 6999999999999999654322 224678999
Q ss_pred EeCCccccccceeeeeeEEEecCCCCCCCCCCCCCCcEEEeeeeecCCcEEEcCCC
Q 046469 113 YSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDFYFDMEYCVEYSTFRTLLT 168 (521)
Q Consensus 113 ~S~~~d~~pv~~I~GKC~V~~~~~~~~~~~~~~~~~dFyc~~~Yd~~~~~f~~lp~ 168 (521)
+|.|+|++++++|.++|.|.+++.+.+. +....-.+|+|+..||..+..|..+-.
T Consensus 116 ~SfH~De~~A~ti~~rC~V~fvp~~kql-p~~~~~~~f~~r~vYd~~~~~~~~~~~ 170 (464)
T KOG1886|consen 116 LSFHEDEAFAETILHRCKVHFVPAYKQL-PNRVGHESFICRRVYDAVTSKLRKLRD 170 (464)
T ss_pred ccccccchhhhhhcccceeeeccccccc-cccCCCCCcccccccccccccccCccc
Confidence 9999999999999999999999988753 333456789999999998887776553
No 27
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=99.10 E-value=6.1e-12 Score=130.75 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=96.8
Q ss_pred EEeCCCEEEEec-CCCccEEEEEeEEeeCCCCeEEEEEEEEeecccccccc-----------------------------
Q 046469 52 IFDLGDCAYIKG-EGTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKE----------------------------- 101 (521)
Q Consensus 52 ~Y~vGD~VyV~~-~~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~----------------------------- 101 (521)
+|++||+||+.. ..+||.|-||+++.++.+|++..+|..|||..|+...-
T Consensus 5 ~y~vgd~vYf~~sss~PYliRrIEELnKTa~GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e~e~E 84 (693)
T KOG3554|consen 5 MYRVGDYVYFENSSSNPYLIRRIEELNKTANGNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATEAEIE 84 (693)
T ss_pred cceecceEEEecCCCChHHHHHHHHHhccccCCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccchhhhh
Confidence 899999999999 77799999999999999999999999999998863200
Q ss_pred --------------ccCCCCcceeEEeCCccccccceeeeeeEEEecCCCCCCCCCCCCCCcEEEeeeeecCCcEE
Q 046469 102 --------------AADFHDRKRLFYSTVMNDNPVDCIISKVIVAQIPPKIGLKSNSIPSSDFYFDMEYCVEYSTF 163 (521)
Q Consensus 102 --------------~~~~~~~rELF~S~~~d~~pv~~I~GKC~V~~~~~~~~~~~~~~~~~dFyc~~~Yd~~~~~f 163 (521)
..+....+|||+|.+.+..|...|+|||.|..+.+......+...++.||+...||+..+++
T Consensus 85 Ee~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~~YL~~eDtFfySLVyDP~~kTL 160 (693)
T KOG3554|consen 85 EESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESLQSYLEKEDTFFYSLVYDPNQKTL 160 (693)
T ss_pred hhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHHHhhccccceeEEEeeeccchhhh
Confidence 12445789999999999999999999999999988776666777889999999999966544
No 28
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.22 E-value=0.00028 Score=53.93 Aligned_cols=50 Identities=52% Similarity=0.947 Sum_probs=40.9
Q ss_pred ceeeeEeeeecCCCCcccCC---cceeEEEEccCCCCCCCcccccccCCC-hhhHHHHHh
Q 046469 355 YEVARIVDICYGDPNESGKR---GLNFKVHWKGYSTSEDSWEPIEGLRNC-PERIKEFVR 410 (521)
Q Consensus 355 ~~v~~l~~~~~g~~~~~~~~---~l~~~v~w~gy~~~~d~~ep~e~~~~~-~~~I~~~v~ 410 (521)
|+|++|++.+ ...+ ...|.|+|+||+.++++|+|.+.+.++ +..|.+|..
T Consensus 1 ~~Ve~Il~~r------~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 1 YEVERILDHR------VVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEE------EETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred CEEEEEEEEE------EeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 5789999884 2233 359999999999999999999999887 777888764
No 29
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.16 E-value=0.00059 Score=51.74 Aligned_cols=53 Identities=47% Similarity=0.824 Sum_probs=43.1
Q ss_pred CcceeeeEeeeecCCCCcccCCcceeEEEEccCCCCCCCcccccccCCChhhHHHHH
Q 046469 353 GEYEVARIVDICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFV 409 (521)
Q Consensus 353 ~~~~v~~l~~~~~g~~~~~~~~~l~~~v~w~gy~~~~d~~ep~e~~~~~~~~I~~~v 409 (521)
++|.|++|++.+.... .+.+.|.|+|+||...+++|+|.+.+.+++..|.+|.
T Consensus 1 ~e~~ve~Il~~r~~~~----~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~ 53 (55)
T cd00024 1 EEYEVEKILDHRKKKD----GGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFK 53 (55)
T ss_pred CCceEeeeeeeeecCC----CCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHH
Confidence 4688999998854331 3679999999999999999999999888767677664
No 30
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.96 E-value=0.0058 Score=61.44 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=34.5
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
..++||||||.|.+++.+.. ...|. .++++|+++.|++..+.|.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~--~~~~~---~v~~vDis~~al~~A~~N~ 130 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA--ALDGI---ELHAADIDPAAVRCARRNL 130 (251)
T ss_pred CCEEEEecCchHHHHHHHHH--hCCCC---EEEEEECCHHHHHHHHHHH
Confidence 35899999999999988741 11233 4689999999999999885
No 31
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.91 E-value=0.0028 Score=54.96 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=37.1
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPE 254 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~ 254 (521)
.+|||+|||.|-+.+.+. +.| ...+.++|+|+.+++..+.|++.
T Consensus 2 ~~vlD~~~G~G~~~~~~~----~~~--~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAAL----RRG--AARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEEETSTTCHHHHHHH----HHC--TCEEEEEESSHHHHHHHHHHCHH
T ss_pred CEEEEcCcchHHHHHHHH----HHC--CCeEEEEEECHHHHHHHHHHHHH
Confidence 479999999999988775 556 23688999999999999998764
No 32
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.91 E-value=0.0093 Score=64.46 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=40.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAEDFL 266 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~~~ 266 (521)
-++||||||.|.+++-|. ..+ . .+.|+|+++.|++..+.|. .+..+++.|+++++
T Consensus 294 ~~vLDl~cG~G~~sl~la----~~~-~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLA----KQA-K--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred CEEEEcCCCcCHHHHHHH----HhC-C--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 379999999999999874 222 2 5799999999999888874 23455566665443
No 33
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.74 E-value=0.0083 Score=63.85 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=33.5
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
++||||||.|.+++.+- ..| . .+.++|+++.|++..+.|.
T Consensus 236 ~vLDL~cG~G~~~l~la----~~~-~--~v~~vE~~~~av~~a~~N~ 275 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCA----GPD-T--QLTGIEIESEAIACAQQSA 275 (374)
T ss_pred EEEEccCCccHHHHHHh----hcC-C--eEEEEECCHHHHHHHHHHH
Confidence 79999999999988764 334 2 6789999999999988874
No 34
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0022 Score=61.66 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=50.2
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC----CCceeecchHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP----EAQVRNEAAEDFL 266 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~----~~~~~~~~~~~~~ 266 (521)
+--+|+||-||+|.+++|.- ..|-. .+.|+|+|+.|+++.+.|-. +..+++.|+.+|-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~----~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~ 106 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAA----LLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR 106 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHH----hcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC
Confidence 34479999999999999875 78855 89999999999999999988 6778888888875
No 35
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.56 E-value=0.0041 Score=59.92 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=44.0
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC------CCceeecchHHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP------EAQVRNEAAEDFL 266 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~------~~~~~~~~~~~~~ 266 (521)
.-++||||||.|.+++.+- +.|.. .+.++|+++.|++..+.|.- ...+++.|+.+++
T Consensus 50 g~~vLDLfaGsG~lglea~----srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l 112 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEAL----SRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL 112 (189)
T ss_pred CCEEEEecCCCcHHHHHHH----hCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence 3479999999998877553 56654 68999999999998887742 3467888887665
No 36
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=96.55 E-value=0.0018 Score=65.85 Aligned_cols=63 Identities=30% Similarity=0.636 Sum_probs=53.2
Q ss_pred CCCCCCCCCCcceeeeEeeeecCCCCcccCCcceeEEEEccCCCCCCCcccccccCCChhhHHHHHhcc
Q 046469 344 SPRDVDIPPGEYEVARIVDICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNG 412 (521)
Q Consensus 344 ~~~~~~~~~~~~~v~~l~~~~~g~~~~~~~~~l~~~v~w~gy~~~~d~~ep~e~~~~~~~~I~~~v~~~ 412 (521)
....++...++|.|+++++. +...+...|.|.|+||+...++|||.+.+.+|+..|.+|....
T Consensus 38 ~~~~~~~~~~~~vvEki~~~------r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~ 100 (270)
T KOG1911|consen 38 VEASEEEEEEEYVVEKILKR------RKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQ 100 (270)
T ss_pred cccccccccchhhhhhhhhc------cccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHh
Confidence 33445556789999999988 5556668899999999999999999999999999999998853
No 37
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.27 E-value=0.032 Score=64.20 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=35.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-+|||||||.|++++-+- .+|.. .+.++|+++.|++.-+.|.
T Consensus 540 ~rVLDlf~gtG~~sl~aa----~~Ga~--~V~~vD~s~~al~~a~~N~ 581 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAA----LGGAK--STTTVDMSNTYLEWAERNF 581 (702)
T ss_pred CeEEEcCCCCCHHHHHHH----HCCCC--EEEEEeCCHHHHHHHHHHH
Confidence 389999999999998764 45654 6889999999999999886
No 38
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.0052 Score=56.71 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=39.0
Q ss_pred CCCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 201 HKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 201 ~~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
..+..+++||.||||.++.|+. ..+ .+.+.++|||+.|++++..|-
T Consensus 46 diEgkkl~DLgcgcGmLs~a~s----m~~--~e~vlGfDIdpeALEIf~rNa 91 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFS----MPK--NESVLGFDIDPEALEIFTRNA 91 (185)
T ss_pred cccCcchhhhcCchhhhHHHhh----cCC--CceEEeeecCHHHHHHHhhch
Confidence 3556689999999999998875 444 558999999999999999995
No 39
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.012 Score=56.57 Aligned_cols=60 Identities=28% Similarity=0.299 Sum_probs=47.3
Q ss_pred CCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC------CCCceeecchHHHHH
Q 046469 202 KAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH------PEAQVRNEAAEDFLE 267 (521)
Q Consensus 202 ~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~------~~~~~~~~~~~~~~~ 267 (521)
..--++||||||.|++. || |.+-|.. -+..+|.|..|+.+.+.|- ....++..|+..+|.
T Consensus 42 i~g~~~LDlFAGSGaLG--lE--AlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~ 107 (187)
T COG0742 42 IEGARVLDLFAGSGALG--LE--ALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK 107 (187)
T ss_pred cCCCEEEEecCCccHhH--HH--HHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH
Confidence 55669999999999864 44 3456654 7789999999999999883 567788888887763
No 40
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.73 E-value=0.021 Score=55.54 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=41.4
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAEDFL 266 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~~~ 266 (521)
-++||||||.|.+++.+- ..|. ..+.++|+++.|++..+.|. .+..+++.|+.+++
T Consensus 55 ~~vLDl~~GsG~l~l~~l----sr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 55 ARCLDCFAGSGALGLEAL----SRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred CEEEEcCCCccHHHHHHH----HcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 489999999999887431 2333 26789999999999888773 23567778876654
No 41
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.73 E-value=0.011 Score=55.74 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=31.6
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
+++|+|||+||-+..|. +. ++ .+.|+|+|+.-++..+.|
T Consensus 2 ~vlD~fcG~GGNtIqFA----~~-~~--~Viaidid~~~~~~a~hN 40 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFA----RT-FD--RVIAIDIDPERLECAKHN 40 (163)
T ss_dssp EEEETT-TTSHHHHHHH----HT-T---EEEEEES-HHHHHHHHHH
T ss_pred EEEEeccCcCHHHHHHH----Hh-CC--eEEEEECCHHHHHHHHHH
Confidence 58999999999999985 34 33 789999999999999988
No 42
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.65 E-value=0.063 Score=54.33 Aligned_cols=44 Identities=25% Similarity=0.140 Sum_probs=34.2
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-+|||+|||.||.++-+.+-+...| .++|+|+++..++..+.|.
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g----~v~a~D~~~~~l~~~~~n~ 116 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEG----AIVANEFSKSRTKVLIANI 116 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCC----EEEEEcCCHHHHHHHHHHH
Confidence 4799999999999987742222223 5789999999998888774
No 43
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=95.61 E-value=0.0099 Score=44.79 Aligned_cols=51 Identities=45% Similarity=0.931 Sum_probs=40.0
Q ss_pred ceeeeEeeeecCCCCcccCCcceeEEEEccCCCCCCCcccccccCCChhhHHHHHh
Q 046469 355 YEVARIVDICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVR 410 (521)
Q Consensus 355 ~~v~~l~~~~~g~~~~~~~~~l~~~v~w~gy~~~~d~~ep~e~~~~~~~~I~~~v~ 410 (521)
+.+++|++.+. ...+.+.|.|+|.|++..+++|+|.+.+..++..|.+|..
T Consensus 2 ~~v~~Il~~r~-----~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 2 YEVEKILDHRW-----KKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred cchheeeeeee-----cCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 45788888742 2346689999999999999999999888767777766654
No 44
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.57 E-value=0.024 Score=60.14 Aligned_cols=55 Identities=25% Similarity=0.386 Sum_probs=44.4
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHHHHH
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAEDFLE 267 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~~~~ 267 (521)
++||||||.|.+++.+. .+.. .+.++|+++.|++..+.|. .+..+++.|+.+++.
T Consensus 209 ~vLDl~~G~G~~sl~la-----~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 209 DLLELYCGNGNFTLALA-----RNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred eEEEEeccccHHHHHHH-----hhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 59999999999999774 3333 6799999999999888773 145688999988874
No 45
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.56 E-value=0.016 Score=55.63 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=39.8
Q ss_pred CCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC------CCceeecchHHHH
Q 046469 202 KAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP------EAQVRNEAAEDFL 266 (521)
Q Consensus 202 ~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~------~~~~~~~~~~~~~ 266 (521)
....++||||||.|.+.+ | |.+-|.. -+.+||.++.|+.+.+.|.- ...+++.|+..++
T Consensus 41 ~~g~~vLDLFaGSGalGl--E--ALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGL--E--ALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL 105 (183)
T ss_dssp HTT-EEEETT-TTSHHHH--H--HHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred cCCCeEEEcCCccCccHH--H--HHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence 456799999999998765 3 3467765 78999999999999999842 1334555554444
No 46
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.54 E-value=0.018 Score=61.34 Aligned_cols=70 Identities=26% Similarity=0.242 Sum_probs=52.0
Q ss_pred cccEEeeeccCChhhHHHHHhhhhc-CCcceEEEEEcCCHHHHHHHHHcCC-----CCceeecchHHHHHHHHHHHHHhh
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLS-CTNLVTRWALDSDKSACESLKLNHP-----EAQVRNEAAEDFLELVKEWQKLCK 277 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~a-G~~~~~~~avd~d~~a~~t~~~N~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 277 (521)
++++||+|||.|..++=+ +.++ |.+ .++++|+++.|++..+.|-- +..+++.|+..++... .+
T Consensus 45 ~~~vLD~faGsG~rgir~---a~e~~ga~--~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~------~~ 113 (374)
T TIGR00308 45 YINIADALSASGIRAIRY---AHEIEGVR--EVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR------NR 113 (374)
T ss_pred CCEEEECCCchhHHHHHH---HhhCCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh------CC
Confidence 589999999999987744 3343 654 78999999999999987742 3578899999887421 24
Q ss_pred hhhhhhh
Q 046469 278 RFAVNIV 284 (521)
Q Consensus 278 ~~~~~~~ 284 (521)
+|.+|+.
T Consensus 114 ~fDvIdl 120 (374)
T TIGR00308 114 KFHVIDI 120 (374)
T ss_pred CCCEEEe
Confidence 5666654
No 47
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.26 E-value=0.022 Score=55.49 Aligned_cols=41 Identities=32% Similarity=0.470 Sum_probs=31.3
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
+|+|+|||+|.+++-+- +.+..+ .++|+|++|.|.+..+.|
T Consensus 104 ~VlD~faGIG~f~l~~a---k~~~~~--~V~A~d~Np~a~~~L~~N 144 (200)
T PF02475_consen 104 VVLDMFAGIGPFSLPIA---KHGKAK--RVYAVDLNPDAVEYLKEN 144 (200)
T ss_dssp EEEETT-TTTTTHHHHH---HHT-SS--EEEEEES-HHHHHHHHHH
T ss_pred EEEEccCCccHHHHHHh---hhcCcc--EEEEecCCHHHHHHHHHH
Confidence 89999999999999653 223433 789999999999988876
No 48
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.25 E-value=0.21 Score=47.06 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=34.2
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-++|||.||.|.++..+. ..|. .+.++|+++.+++..+.|.
T Consensus 21 ~~vLdlG~G~G~~~~~l~----~~~~---~v~~vD~s~~~~~~a~~~~ 61 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLK----GKGK---CILTTDINPFAVKELRENA 61 (179)
T ss_pred CeEEEeCCChhHHHHHHH----hcCC---EEEEEECCHHHHHHHHHHH
Confidence 369999999999988775 4553 5789999999999888874
No 49
>PRK14967 putative methyltransferase; Provisional
Probab=94.99 E-value=0.42 Score=46.85 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=33.3
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-++||++||.|.++.-+. ..|.. .+.++|+++.+++.-+.|.
T Consensus 38 ~~vLDlGcG~G~~~~~la----~~~~~--~v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAA----AAGAG--SVTAVDISRRAVRSARLNA 79 (223)
T ss_pred CeEEEecCCHHHHHHHHH----HcCCC--eEEEEECCHHHHHHHHHHH
Confidence 489999999999887654 44543 5789999999998777764
No 50
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.99 E-value=0.038 Score=58.43 Aligned_cols=54 Identities=28% Similarity=0.396 Sum_probs=43.8
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC-----CCceeecchHHHH
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP-----EAQVRNEAAEDFL 266 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~-----~~~~~~~~~~~~~ 266 (521)
++||||||.|.+++.|. .+.. .+.|+|+++.|++..+.|.- +..+++.|+++++
T Consensus 200 ~vlDl~~G~G~~sl~la-----~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 200 DLLELYCGNGNFSLALA-----QNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred cEEEEeccccHHHHHHH-----HhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH
Confidence 59999999999999774 3333 68999999999999988742 3567888998876
No 51
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=94.79 E-value=0.056 Score=57.81 Aligned_cols=58 Identities=22% Similarity=0.141 Sum_probs=45.5
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAEDFL 266 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~~~ 266 (521)
..++||+|||+|.+++-+. ..+|. ..++++|+++.|++..+.|- .+..+++.|+++++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a---~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRYA---LETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL 120 (382)
T ss_pred CCEEEECCCcccHHHHHHH---HHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence 3579999999999988663 34564 36899999999999998773 23458889998776
No 52
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=94.74 E-value=0.053 Score=58.26 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=42.6
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC-------CCceeecchHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP-------EAQVRNEAAEDFLE 267 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~-------~~~~~~~~~~~~~~ 267 (521)
-+|||||||.|++++..- ..|.. .+.++|+++.|++..+.|.- ...+++.|+.+++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa----~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~ 285 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSAL----MGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR 285 (396)
T ss_pred CeEEEeccCCCHHHHHHH----hCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHH
Confidence 479999999999876432 34533 67899999999988877642 24577888887763
No 53
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=94.69 E-value=0.054 Score=56.20 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=43.7
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAEDFL 266 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~~~ 266 (521)
-++||||||.|.+++-+. ..|. .+.|+|+++.|++..+.|. ++..+++.|+++++
T Consensus 175 ~~VLDl~cG~G~~sl~la----~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCA----TPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA 234 (315)
T ss_pred CEEEEccCCCCHHHHHHH----hcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence 479999999999988774 4442 5789999999999887763 34668888888765
No 54
>PHA03411 putative methyltransferase; Provisional
Probab=94.65 E-value=0.072 Score=54.41 Aligned_cols=57 Identities=19% Similarity=0.133 Sum_probs=45.7
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFL 266 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~ 266 (521)
-+|||++||+|.++..+. ...+.. .+.++|+++.+++..+.|+|+..+++.|+.++.
T Consensus 66 grVLDLGcGsGilsl~la---~r~~~~--~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~ 122 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCML---HRCKPE--KIVCVELNPEFARIGKRLLPEAEWITSDVFEFE 122 (279)
T ss_pred CeEEEcCCCCCHHHHHHH---HhCCCC--EEEEEECCHHHHHHHHHhCcCCEEEECchhhhc
Confidence 379999999999887663 122222 578999999999999999999889999887653
No 55
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=94.25 E-value=0.26 Score=53.61 Aligned_cols=44 Identities=23% Similarity=0.147 Sum_probs=33.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-+|||+|||.||.++-+...+...| .++|+|+++..++..+.|.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~----~V~avD~s~~~l~~~~~~~ 295 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG----QITAVDRYPQKLEKIRSHA 295 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc----EEEEEECCHHHHHHHHHHH
Confidence 4799999999999886642222122 6789999999999888875
No 56
>PHA03412 putative methyltransferase; Provisional
Probab=94.25 E-value=0.061 Score=53.80 Aligned_cols=59 Identities=20% Similarity=0.141 Sum_probs=45.9
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAED 264 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~ 264 (521)
..+|||+.||.|.+++.+-.-+.... . ..+.|+|+|+.|++.-+.|.+...+++.|+.+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~-~-~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~ 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAK-P-REIVCVELNHTYYKLGKRIVPEATWINADALT 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCC-C-cEEEEEECCHHHHHHHHhhccCCEEEEcchhc
Confidence 45999999999999987642111112 1 25789999999999999999998898888764
No 57
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.05 E-value=0.057 Score=56.71 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=35.6
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
=+|+|+|||+|-+++-+- ..|-. .++|+|+||.|++-++.|-
T Consensus 190 E~V~DmFAGVGpfsi~~A----k~g~~--~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 190 ETVLDMFAGVGPFSIPIA----KKGRP--KVYAIDINPDAVEYLKENI 231 (341)
T ss_pred CEEEEccCCcccchhhhh----hcCCc--eEEEEecCHHHHHHHHHHH
Confidence 389999999999999764 56653 3899999999999999884
No 58
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=93.85 E-value=0.32 Score=52.73 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=34.2
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-+|||++||.|+.++-+. ..+-. ..+.|+|+++.+++..+.|.
T Consensus 246 ~~VLDlgaG~G~~t~~la----~~~~~-~~v~a~D~s~~~l~~~~~n~ 288 (427)
T PRK10901 246 ERVLDACAAPGGKTAHIL----ELAPQ-AQVVALDIDAQRLERVRENL 288 (427)
T ss_pred CEEEEeCCCCChHHHHHH----HHcCC-CEEEEEeCCHHHHHHHHHHH
Confidence 479999999999998765 22211 26789999999999998885
No 59
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.84 E-value=0.076 Score=57.68 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=45.2
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC---C--CCceeecchHHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH---P--EAQVRNEAAEDFLE 267 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~---~--~~~~~~~~~~~~~~ 267 (521)
..-+++|||||.|.+++.|- -. +.-+.++|+.+.|++.-+.|- . +..+...++++|..
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA-----~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLA-----KR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred CCCEEEEeccCCChhhhhhc-----cc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 44589999999999999873 23 447889999999998887662 1 35677899998874
No 60
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=93.59 E-value=0.29 Score=53.09 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=33.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-+|||++||.||.++-+.. ..+-+ -.+.|+|+++..++..+.|.
T Consensus 254 ~~VLDl~ag~G~kt~~la~---~~~~~-g~v~a~D~~~~rl~~~~~n~ 297 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAE---LMGDQ-GEIWAVDRSASRLKKLQENA 297 (434)
T ss_pred CEEEEeCCCCchhHHHHHH---HhCCC-ceEEEEcCCHHHHHHHHHHH
Confidence 4799999999999987752 22211 15789999999998888774
No 61
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=93.13 E-value=0.25 Score=53.66 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=33.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-+|||+|||.||.++-+.. ..+-. -.+.|+|+++..++..+.|.
T Consensus 239 ~~VLD~cagpGgkt~~la~---~~~~~-g~V~a~Dis~~rl~~~~~n~ 282 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAE---LMKDQ-GKILAVDISREKIQLVEKHA 282 (431)
T ss_pred CEEEEeCCCccHHHHHHHH---HcCCC-CEEEEEECCHHHHHHHHHHH
Confidence 4799999999999987642 22111 15789999999999988874
No 62
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=92.85 E-value=0.16 Score=55.24 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=33.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-++||++||.||.++-+.. ..+-. -.+.|+|+++.+++..+.|.
T Consensus 252 ~~VLDlgaG~G~~t~~la~---~~~~~-~~v~avDi~~~~l~~~~~n~ 295 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAE---LLKNT-GKVVALDIHEHKLKLIEENA 295 (444)
T ss_pred CEEEEeCCCCCHHHHHHHH---HhCCC-CEEEEEeCCHHHHHHHHHHH
Confidence 3799999999999987752 22111 16789999999998888774
No 63
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.83 E-value=0.13 Score=54.29 Aligned_cols=54 Identities=28% Similarity=0.372 Sum_probs=35.6
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC-----CCceeecchHHHH
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP-----EAQVRNEAAEDFL 266 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~-----~~~~~~~~~~~~~ 266 (521)
++||||||+|.+++-|. ..++ -+.|+|+++.|++.-+.|-- +..+++.+++++.
T Consensus 199 ~vlDlycG~G~fsl~la-----~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~ 257 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLA-----KKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFA 257 (352)
T ss_dssp EEEEES-TTTCCHHHHH-----CCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCC
T ss_pred cEEEEeecCCHHHHHHH-----hhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchh
Confidence 69999999999999873 3433 78999999998877766531 2344455555543
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=92.82 E-value=0.93 Score=43.87 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=38.3
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecch
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAA 262 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~ 262 (521)
..-++||+.||.|.++..+. +.... ..+.++|+++.+++..+.|. ++..+++.|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la---~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~ 99 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMA---KANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDA 99 (202)
T ss_pred CCCeEEEEccCCCHHHHHHH---HHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCH
Confidence 34589999999999999874 12221 25789999999988777653 3334455555
No 65
>PRK03612 spermidine synthase; Provisional
Probab=92.47 E-value=2.2 Score=47.52 Aligned_cols=43 Identities=16% Similarity=-0.004 Sum_probs=33.8
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
+-+||++-+|.|++...+. +.+- +..+.++|+|+..++..+.|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll----~~~~-v~~v~~VEid~~vi~~ar~~ 340 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVL----KYPD-VEQVTLVDLDPAMTELARTS 340 (521)
T ss_pred CCeEEEEcCCccHHHHHHH----hCCC-cCeEEEEECCHHHHHHHHhC
Confidence 3479999999999887664 2321 24788999999999999885
No 66
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=92.24 E-value=0.2 Score=46.94 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=43.4
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC---CCceeecchHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP---EAQVRNEAAEDF 265 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~---~~~~~~~~~~~~ 265 (521)
-++||++||.|.++.-+. +.+. .+.|+|+++.+++..+.|+. +..+++.|+.++
T Consensus 15 ~~vLEiG~G~G~lt~~l~----~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~ 71 (169)
T smart00650 15 DTVLEIGPGKGALTEELL----ERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF 71 (169)
T ss_pred CEEEEECCCccHHHHHHH----hcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC
Confidence 379999999999999775 3442 57899999999999999865 456778887755
No 67
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=92.19 E-value=0.23 Score=53.99 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=43.2
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAEDFL 266 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~~~ 266 (521)
-++||||||.|.+++.|- ..+ ..+.|+|+++.|++..+.|. .+..+++.|+.+++
T Consensus 299 ~~VLDlgcGtG~~sl~la----~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLA----RQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred CEEEEEeccCCHHHHHHH----HhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence 489999999999998774 333 26789999999999888763 34667888887654
No 68
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=91.99 E-value=0.28 Score=46.13 Aligned_cols=45 Identities=29% Similarity=0.214 Sum_probs=36.7
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
..-++|||.||+|.+++.+. +.+-+. .+.++|+++.|++..+.|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la----~~~~~~-~v~~vDi~~~a~~~a~~n~ 75 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALA----KRGPDA-KVTAVDINPDALELAKRNA 75 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHH----HTSTCE-EEEEEESBHHHHHHHHHHH
T ss_pred cCCeEEEecCChHHHHHHHH----HhCCCC-EEEEEcCCHHHHHHHHHHH
Confidence 44579999999999999775 444433 4899999999999999985
No 69
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=91.75 E-value=0.37 Score=40.79 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=42.0
Q ss_pred EEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC----CCCceeecchHHHH
Q 046469 207 LLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH----PEAQVRNEAAEDFL 266 (521)
Q Consensus 207 vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~----~~~~~~~~~~~~~~ 266 (521)
||||-||.|-....|...+ .+|.+ ..++++|+++.+++..+.++ +....++.|+.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~ 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPS-SRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH
T ss_pred CEEeecCCcHHHHHHHHHh-hhccc-ceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc
Confidence 6899999999999887433 34532 36889999999999888888 68888999998753
No 70
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=91.57 E-value=0.34 Score=44.29 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=43.9
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc-----CCCCceeecchHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN-----HPEAQVRNEAAED 264 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N-----~~~~~~~~~~~~~ 264 (521)
...+||||.||.|-+...|.. ..+... .+.++|+++.+++..+.+ +++..++++|+.+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~---~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~ 65 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK---ELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED 65 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH---HSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC
T ss_pred CCCEEEEecCcCcHHHHHHHH---hcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEeehhc
Confidence 567999999999999998851 222222 488999999999888873 5567788888887
No 71
>PRK07402 precorrin-6B methylase; Provisional
Probab=90.96 E-value=0.52 Score=45.14 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=40.6
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAEDF 265 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~~ 265 (521)
-++||++||.|.++..+. +...-. .+.++|+++.+++..+.|. .+..+++.|+.+.
T Consensus 42 ~~VLDiG~G~G~~~~~la---~~~~~~--~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAG---LLCPKG--RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred CEEEEeCCCCCHHHHHHH---HHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence 479999999999988763 122111 5789999999999888763 3456677777653
No 72
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.19 E-value=0.44 Score=40.59 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=41.9
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC------CCCceeecch
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH------PEAQVRNEAA 262 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~------~~~~~~~~~~ 262 (521)
-+||||=||.|.++.-+.. ...|.+ +.|+|+++.+++..+.|. +...+++.|+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~--~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALAR--LFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHH--HHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHh--cCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 4799999999999998751 125653 679999999999999887 4556777777
No 73
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=89.52 E-value=0.97 Score=36.25 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=39.0
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHH-----cCCCCceeecchHHHH
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKL-----NHPEAQVRNEAAEDFL 266 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~-----N~~~~~~~~~~~~~~~ 266 (521)
+++|+.||.|+.+..+. ..+. ..+.++|+++.+.+..+. ..+...++..|+.++.
T Consensus 1 ~ildig~G~G~~~~~~~----~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (107)
T cd02440 1 RVLDLGCGTGALALALA----SGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60 (107)
T ss_pred CeEEEcCCccHHHHHHh----cCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc
Confidence 58999999999988775 3333 378999999999887761 1233456666666554
No 74
>PRK06202 hypothetical protein; Provisional
Probab=89.42 E-value=0.85 Score=44.82 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=43.2
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC--CCceeecchHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP--EAQVRNEAAED 264 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~--~~~~~~~~~~~ 264 (521)
...++|||-||.|.++..|..-+...|.+. .+.++|+++.+++..+.+.. +..+.+.++++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 122 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRL-EVTAIDPDPRAVAFARANPRRPGVTFRQAVSDE 122 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCc-EEEEEcCCHHHHHHHHhccccCCCeEEEEeccc
Confidence 456999999999999887753333456543 47899999999998887753 33444444443
No 75
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=89.31 E-value=0.43 Score=48.87 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=35.7
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
+++||++|.|-+++++- ..+-+ -.+.|+|+++.|+++-+.|-
T Consensus 113 ~ilDlGTGSG~iai~la----~~~~~-~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 113 RILDLGTGSGAIAIALA----KEGPD-AEVIAVDISPDALALARENA 154 (280)
T ss_pred cEEEecCChHHHHHHHH----hhCcC-CeEEEEECCHHHHHHHHHHH
Confidence 89999999999999885 44432 36899999999999999984
No 76
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=89.11 E-value=0.24 Score=50.95 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=36.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
=.++|||||+|=+++-|- -.||-+ +++|+|++|.+++.++.|-
T Consensus 196 eviVDLYAGIGYFTlpfl---V~agAk--~V~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFL---VTAGAK--TVFACEWNPWSVEALRRNA 238 (351)
T ss_pred chhhhhhcccceEEeehh---hccCcc--EEEEEecCHHHHHHHHHHH
Confidence 478999999999998442 378966 8999999999999999884
No 77
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=89.10 E-value=0.87 Score=43.76 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=40.7
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc---C---CCCceeecchHHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN---H---PEAQVRNEAAEDFL 266 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N---~---~~~~~~~~~~~~~~ 266 (521)
.-+++|+.||.|.++..+. +.+|-. ..+.++|+++.+++..+.| + .+..+++.|+.+++
T Consensus 41 ~~~vlDlG~GtG~~s~~~a---~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEAS---LLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred cCEEEEeCCcCCHHHHHHH---HHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence 3489999999999988653 223321 2578999999998876655 2 23456667776654
No 78
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.02 E-value=0.33 Score=52.08 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=45.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCC-------CceeecchHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPE-------AQVRNEAAEDFLE 267 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~-------~~~~~~~~~~~~~ 267 (521)
=.+.|+|||+|-+++-.. .-| -.++|+|.++.+.+-+++|-+- ..+++.||.+|+.
T Consensus 251 evv~D~FaGvGPfa~Pa~----kK~---crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 251 EVVCDVFAGVGPFALPAA----KKG---CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred chhhhhhcCcCccccchh----hcC---cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 368999999999987432 333 3789999999999999999872 4688999999993
No 79
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=88.32 E-value=0.78 Score=49.06 Aligned_cols=61 Identities=23% Similarity=0.198 Sum_probs=41.8
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC------C-CCceeecchHHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH------P-EAQVRNEAAEDFLE 267 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~------~-~~~~~~~~~~~~~~ 267 (521)
+++++||.+||+|.-++=+. ..-+|.. .+|++|+++.|++..+.|. . ...+.+.||+.++.
T Consensus 49 ~~~~~lDalaasGvR~iRy~--~E~~~~~--~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~ 116 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYA--KELAGVD--KVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY 116 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHH--HH-SSEC--EEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC
T ss_pred CCceEEeccccccHHHHHHH--HHcCCCC--EEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh
Confidence 56999999999997654332 1136754 8999999999999999982 1 13566889998873
No 80
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=88.29 E-value=0.18 Score=52.41 Aligned_cols=54 Identities=26% Similarity=0.522 Sum_probs=43.7
Q ss_pred CCcceeeeEeeeecCCCCcccCCcceeEEEEccCCCCCCCcccccccCCChhhHHHHHhcc
Q 046469 352 PGEYEVARIVDICYGDPNESGKRGLNFKVHWKGYSTSEDSWEPIEGLRNCPERIKEFVRNG 412 (521)
Q Consensus 352 ~~~~~v~~l~~~~~g~~~~~~~~~l~~~v~w~gy~~~~d~~ep~e~~~~~~~~I~~~v~~~ 412 (521)
..+|.+|.|+.. ++..|.+.|.|+|+||+.-+++|||.+|. ..+.+|.-|-.+.
T Consensus 8 e~VfAaEsIlkk------RirKGrvEYlVKWkGWs~kyNTWEPEENI-LDpRLi~AFe~rE 61 (369)
T KOG2748|consen 8 ERVFAAESILKK------RIRKGRVEYLVKWKGWSQKYNTWEPEENI-LDPRLIAAFEQRE 61 (369)
T ss_pred hhHHHHHHHHHH------HhhccceEEEEEecccccccCccCccccc-cCHHHHHHHHhhh
Confidence 467888888876 77889999999999999999999999874 4566676666543
No 81
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=88.24 E-value=0.72 Score=47.76 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=39.1
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
...++||+=||.|-++.+.. ..|-. .+.|+|+||.|.++-+.|.
T Consensus 162 ~g~~vlDvGcGSGILaIAa~----kLGA~--~v~g~DiDp~AV~aa~eNa 205 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA----KLGAK--KVVGVDIDPQAVEAARENA 205 (300)
T ss_pred CCCEEEEecCChhHHHHHHH----HcCCc--eEEEecCCHHHHHHHHHHH
Confidence 56699999999999999765 78866 7899999999999999985
No 82
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=88.19 E-value=0.95 Score=44.06 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=43.9
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAED 264 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~ 264 (521)
-+|||+=||.|-....|.. ..+.. .+.|+|+++.+++..+.++|+..+.+.|+.+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~---~~~~~--~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~ 99 (204)
T TIGR03587 45 ASILELGANIGMNLAALKR---LLPFK--HIYGVEINEYAVEKAKAYLPNINIIQGSLFD 99 (204)
T ss_pred CcEEEEecCCCHHHHHHHH---hCCCC--eEEEEECCHHHHHHHHhhCCCCcEEEeeccC
Confidence 4799999999999988851 22322 5789999999999999999887777766654
No 83
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=87.74 E-value=1.5 Score=48.27 Aligned_cols=46 Identities=20% Similarity=0.101 Sum_probs=35.0
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
..-+|||+|||.||-++-+-+-+...| .++|+|+++.-++..+.|-
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g----~lvA~D~~~~R~~~L~~nl 158 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQG----AIVANEYSASRVKVLHANI 158 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCC----EEEEEeCCHHHHHHHHHHH
Confidence 335899999999999997742222223 6789999999998888773
No 84
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=87.64 E-value=0.69 Score=47.82 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=35.7
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
+|||+=||.|-++.+.. ..|-+ .+.|+|+|+.|+++-+.|.
T Consensus 164 ~vLDvG~GSGILaiaA~----klGA~--~v~a~DiDp~Av~~a~~N~ 204 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAA----KLGAK--KVVAIDIDPLAVEAARENA 204 (295)
T ss_dssp EEEEES-TTSHHHHHHH----HTTBS--EEEEEESSCHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHH----HcCCC--eEEEecCCHHHHHHHHHHH
Confidence 99999999999999754 78866 7899999999999999884
No 85
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=86.98 E-value=0.82 Score=46.45 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC--CCCceeecchHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH--PEAQVRNEAAEDF 265 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~--~~~~~~~~~~~~~ 265 (521)
-+|||+-||.|.++..+. ..+. .+.|+|+|+.+++..+.|+ ++..+++.|+.++
T Consensus 44 ~~VLEiG~G~G~lt~~L~----~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~ 99 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLL----ERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV 99 (272)
T ss_pred CeEEEeCCCccHHHHHHH----HhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence 489999999999998875 4443 4679999999999999887 5667888888764
No 86
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=86.88 E-value=1 Score=46.14 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=34.1
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
.++||++||.|.++..+. ...-+. .+.|+|+++.|++..+.|.
T Consensus 123 ~~vLDlG~GsG~i~~~la----~~~~~~-~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACA----YAFPEA-EVDAVDISPDALAVAEINI 165 (284)
T ss_pred CEEEEEeCchhHHHHHHH----HHCCCC-EEEEEECCHHHHHHHHHHH
Confidence 489999999999998875 222112 4679999999999999884
No 87
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=86.72 E-value=0.97 Score=45.24 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=43.8
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC---CCCceeecchHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH---PEAQVRNEAAEDF 265 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~---~~~~~~~~~~~~~ 265 (521)
.-+|||+.||.|.++..+. ..+- .+.++|+|+.+++..+.++ ++..+++.|+.++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~----~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLL----KRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV 87 (253)
T ss_pred cCEEEEeCCCCCHHHHHHH----HhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC
Confidence 3589999999999999886 4543 4789999999999998886 4556777777653
No 88
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=86.63 E-value=0.85 Score=46.56 Aligned_cols=45 Identities=33% Similarity=0.327 Sum_probs=36.0
Q ss_pred CCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 202 KAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 202 ~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
..+..++|++||.|.+|+++-.++ + =-++-|+|..+.|+..-..|
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L---~--~~~v~AiD~S~~Ai~La~eN 191 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGL---P--QCTVTAIDVSKAAIKLAKEN 191 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcC---C--CceEEEEeccHHHHHHHHHH
Confidence 344489999999999999995332 2 23778999999999988887
No 89
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=86.16 E-value=1 Score=46.11 Aligned_cols=42 Identities=24% Similarity=0.194 Sum_probs=35.2
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-+|||+.||.|.++..+. ..|.. .+.|+|+++.|++.-+.|.
T Consensus 161 ~~VLDvGcGsG~lai~aa----~~g~~--~V~avDid~~al~~a~~n~ 202 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAAL----KLGAA--KVVGIDIDPLAVESARKNA 202 (288)
T ss_pred CEEEEeCCChhHHHHHHH----HcCCC--eEEEEECCHHHHHHHHHHH
Confidence 589999999999887664 56654 7899999999999888874
No 90
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=86.13 E-value=1.3 Score=43.05 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=34.7
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP 253 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~ 253 (521)
..++||+.||.|.++.-+. ..+. .+.++|+++.+++..+.+.+
T Consensus 56 ~~~vLDiGcG~G~~~~~la----~~~~---~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELA----KRGA---IVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCEEEEEeCCCCHHHHHHH----HCCC---EEEEEECCHHHHHHHHHHHH
Confidence 4589999999999988764 3443 56899999999988887654
No 91
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=85.89 E-value=1.1 Score=46.70 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=37.6
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAED 264 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~ 264 (521)
.-++||.|||.|++..-.. ..|. .+.++|+++.++..-+.|. ++..+++.|+.+
T Consensus 183 g~~vLDp~cGtG~~lieaa----~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~ 241 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAG----LMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK 241 (329)
T ss_pred cCEEEECCCCCCHHHHHHH----HhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc
Confidence 3479999999999865332 3454 4689999999888777664 233455666654
No 92
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=85.52 E-value=13 Score=40.00 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=41.6
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC-------CCceeecchHHHH
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP-------EAQVRNEAAEDFL 266 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~-------~~~~~~~~~~~~~ 266 (521)
+||+|||=.||+|+-. +.+|-. -+..||++..|++.-+.|+- ....+++|+-+++
T Consensus 220 rvLNlFsYTGgfSv~A----a~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l 281 (393)
T COG1092 220 RVLNLFSYTGGFSVHA----ALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWL 281 (393)
T ss_pred eEEEecccCcHHHHHH----HhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHH
Confidence 6999999999999854 367764 67899999999999998853 1235555555555
No 93
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=85.30 E-value=2.1 Score=42.63 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=45.1
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDF 265 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~ 265 (521)
.-++||+-||.|.++.-+. ...+. ..+.++|+++.+++..+.++++..++..|++++
T Consensus 32 ~~~vLDiGcG~G~~~~~la---~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~ 88 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLV---ERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASW 88 (258)
T ss_pred CCEEEEEcccCCHHHHHHH---HHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhcc
Confidence 4589999999999987664 12222 257899999999999999998888888888754
No 94
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=85.12 E-value=1.6 Score=44.98 Aligned_cols=58 Identities=26% Similarity=0.260 Sum_probs=40.5
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC-------CCceeecchHHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP-------EAQVRNEAAEDFLEL 268 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~-------~~~~~~~~~~~~~~~ 268 (521)
-+||||||=.||+|+..- .+|-. .+..||.+..|++..+.|+- ....+++|+-++++.
T Consensus 125 krvLnlFsYTGgfsv~Aa----~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~ 189 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAA----AGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR 189 (286)
T ss_dssp CEEEEET-TTTHHHHHHH----HTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH
T ss_pred CceEEecCCCCHHHHHHH----HCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH
Confidence 399999999999999542 57744 67899999998887776632 234567787776643
No 95
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=85.12 E-value=0.098 Score=55.63 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=82.9
Q ss_pred EEEEEECCEEEeCCCEEEEec--CCCccEEEEEeEEeeCCCCeEEEEEEEEeeccccccccccCCCCcceeEEeCCcccc
Q 046469 43 YAQARIGECIFDLGDCAYIKG--EGTQKHIGKILEFFKTTDGEEYFRVQWFYRAEDTVMKEAADFHDRKRLFYSTVMNDN 120 (521)
Q Consensus 43 Y~~~~vdG~~Y~vGD~VyV~~--~~~p~~IarI~~i~~~~~g~~~v~v~WFyRpedt~~~~~~~~~~~rELF~S~~~d~~ 120 (521)
-..+.+.+..+.+|+.+.+.+ +...+.++.+...|.+.+...+.-+.|||||+.+.+. ..+.+..+++......+.+
T Consensus 267 ~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 345 (371)
T COG5076 267 RESVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVR-DAKLFFDNCVMYNGEVTDY 345 (371)
T ss_pred chhhcccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCcccccc-ccchhhhcccccchhhhhh
Confidence 446677888999999999998 5667899999999999888888899999999977655 5778889999999999999
Q ss_pred ccceeeeeeEEEecCCCCC
Q 046469 121 PVDCIISKVIVAQIPPKIG 139 (521)
Q Consensus 121 pv~~I~GKC~V~~~~~~~~ 139 (521)
+++...+.|.|.+...+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~ 364 (371)
T COG5076 346 YKNANVLEDFVIKKTRLIR 364 (371)
T ss_pred hhhccchhhhHhhhhhhhh
Confidence 9999999999988765553
No 96
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=85.09 E-value=1.3 Score=44.38 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=35.6
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
..-++||+-||.|.++..+. ..|.. .+.|+|+++.+++.-+.|.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~----~~g~~--~v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAA----KLGAK--KVLAVDIDPQAVEAARENA 162 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHH----HcCCC--eEEEEECCHHHHHHHHHHH
Confidence 34589999999998887654 56754 5899999999999888774
No 97
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=84.53 E-value=1.9 Score=41.20 Aligned_cols=57 Identities=25% Similarity=0.277 Sum_probs=39.4
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc-----CCCCceeecchHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN-----HPEAQVRNEAAEDF 265 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N-----~~~~~~~~~~~~~~ 265 (521)
..++||+-||.|.++.-+. ..+-+. .+.|+|.++.+++..+.| .++..+++.|++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la----~~~~~~-~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~ 104 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA----IARPEL-KLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF 104 (181)
T ss_pred CCeEEEecCCCCccHHHHH----HHCCCC-eEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc
Confidence 4589999999998887663 222212 478999999876655433 33566778888764
No 98
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=84.42 E-value=2.3 Score=44.60 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=42.0
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC---C---CCceeecchHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH---P---EAQVRNEAAEDF 265 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~---~---~~~~~~~~~~~~ 265 (521)
...++||+-||.|.++.-|. +.|. .++++|.++.+++..+.+. + ...+++.+++++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La----~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l 192 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLA----RMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHH----HcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence 44689999999999988664 5565 4689999999998887653 1 344667777765
No 99
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=84.29 E-value=1.9 Score=42.81 Aligned_cols=55 Identities=18% Similarity=0.039 Sum_probs=43.7
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDF 265 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~ 265 (521)
.-+|||+=||.|.++.-|. ..|. .+.++|+++.+++..+.+.+...+++.|++++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~----~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~ 97 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWR----ERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESL 97 (251)
T ss_pred CCeEEEeeCCCCHHHHHHH----HcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccC
Confidence 3479999999999877664 4553 57899999999999999887666777777653
No 100
>KOG2730 consensus Methylase [General function prediction only]
Probab=84.28 E-value=1.4 Score=43.69 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=44.4
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CC-CceeecchHHHHHHHHHHHHHhhh
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PE-AQVRNEAAEDFLELVKEWQKLCKR 278 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~ 278 (521)
-.++|-|||+||...-|- .-|- .+.++|+||.-+..-+.|- |+ ..++|. |||.+.+.||--.++
T Consensus 96 ~~iidaf~g~gGntiqfa----~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G---D~ld~~~~lq~~K~~ 165 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFA----LQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICG---DFLDLASKLKADKIK 165 (263)
T ss_pred chhhhhhhcCCchHHHHH----HhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEec---hHHHHHHHHhhhhhe
Confidence 478999999999998764 2333 6789999999888888873 22 234555 455666666554443
No 101
>PRK00811 spermidine synthase; Provisional
Probab=84.11 E-value=2.8 Score=42.94 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=45.4
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC----------CCceeecchHHHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP----------EAQVRNEAAEDFLE 267 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~----------~~~~~~~~~~~~~~ 267 (521)
+-+||+|-+|.|++..-+. +..+.. .+.++|+|+..++..+.++| ...++.+|+..+++
T Consensus 77 p~~VL~iG~G~G~~~~~~l---~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~ 145 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVL---KHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA 145 (283)
T ss_pred CCEEEEEecCchHHHHHHH---cCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh
Confidence 4489999999999987653 233543 78899999999988887664 45678899988773
No 102
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=83.95 E-value=1.8 Score=43.44 Aligned_cols=58 Identities=28% Similarity=0.303 Sum_probs=45.1
Q ss_pred CCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCce----eecchHHHH
Q 046469 202 KAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQV----RNEAAEDFL 266 (521)
Q Consensus 202 ~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~----~~~~~~~~~ 266 (521)
...++|||+=||.|-+|.-+. +.|.+ +.|+|+.+.++++-+.+-+..-+ .+..++|++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mA----r~Ga~---VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~ 119 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLA----RLGAS---VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA 119 (243)
T ss_pred CCCCeEEEecCCccHhhHHHH----HCCCe---eEEecCChHHHHHHHHhhhhccccccchhhhHHHHH
Confidence 678999999999998888765 89964 57999999999999976664433 345556655
No 103
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=83.79 E-value=1.8 Score=41.10 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=33.5
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-++||+.||.|.++..+. +.+-+ ..+.++|+++.+++..+.|.
T Consensus 33 ~~vLDiG~G~G~~~~~la----~~~~~-~~v~~vD~s~~~~~~a~~n~ 75 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAA----LQFPS-LQVTAIERNPDALRLIKENR 75 (187)
T ss_pred CEEEEECCcCCHHHHHHH----HHCCC-CEEEEEECCHHHHHHHHHHH
Confidence 489999999999998774 33222 14789999999998888764
No 104
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=83.59 E-value=1.7 Score=43.78 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=43.6
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC------CCceeecchHHHHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP------EAQVRNEAAEDFLEL 268 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~------~~~~~~~~~~~~~~~ 268 (521)
.-++|||.||+|.+++-+. .+-. -..+.+||+++.+.+--+.|-- ...+++.|+.+|...
T Consensus 45 ~~~IlDlGaG~G~l~L~la---~r~~--~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 45 KGRILDLGAGNGALGLLLA---QRTE--KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred CCeEEEecCCcCHHHHHHh---ccCC--CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 6699999999999999763 2211 1256799999997776665522 356888888888754
No 105
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=83.49 E-value=3.4 Score=39.48 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHHHHHH
Q 046469 202 KAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELVKE 271 (521)
Q Consensus 202 ~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~~~~~ 271 (521)
..-+-||+|=.|.|.++..+- +-|+.=+...++|++++-...+...+|+..+++.|+.++-..++|
T Consensus 47 esglpVlElGPGTGV~TkaIL----~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAIL----SRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHH----hcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence 345789999999999999885 789888899999999999999999999999999999998866654
No 106
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=82.89 E-value=3.3 Score=35.50 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=37.2
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc-----CCCCceeecchH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN-----HPEAQVRNEAAE 263 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N-----~~~~~~~~~~~~ 263 (521)
.+++|+.||.|.++.-+. ...+- ..+.++|+++.+++.-+.| .++..+++.|+.
T Consensus 21 ~~vldlG~G~G~~~~~l~---~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 79 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAA---RLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAP 79 (124)
T ss_pred CEEEEeCCCCCHHHHHHH---HHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 389999999999988664 22221 2578999999988876654 334455555554
No 107
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=82.74 E-value=1.9 Score=45.04 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=36.3
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP 253 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~ 253 (521)
...+|||+.||.|.++.-|. +.|. .+.++|+++.+++.-+.|.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la----~~g~---~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLA----LEGA---IVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCCEEEEecCCCCHHHHHHH----HCCC---EEEEEECCHHHHHHHHHHHH
Confidence 34699999999999998775 5565 46799999999988888764
No 108
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=82.36 E-value=1.8 Score=44.20 Aligned_cols=43 Identities=28% Similarity=0.316 Sum_probs=33.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
.+++|++||.|.+++.+. ...-+. .+.|+|+++.|++..+.|.
T Consensus 116 ~~vLDlG~GsG~i~l~la----~~~~~~-~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 116 LHILDLGTGSGCIALALA----YEFPNA-EVIAVDISPDALAVAEENA 158 (284)
T ss_pred CEEEEEeccHhHHHHHHH----HHCCCC-EEEEEECCHHHHHHHHHHH
Confidence 589999999999988775 222111 4689999999999999873
No 109
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=82.28 E-value=1.8 Score=43.52 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=42.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC---CCceeecchHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP---EAQVRNEAAEDF 265 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~---~~~~~~~~~~~~ 265 (521)
-++||+-||.|.++..+. +.+. .+.++|+|+.+++..+.++. +..+++.|+.++
T Consensus 31 ~~VLEIG~G~G~lt~~L~----~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~ 87 (258)
T PRK14896 31 DPVLEIGPGKGALTDELA----KRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV 87 (258)
T ss_pred CeEEEEeCccCHHHHHHH----HhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC
Confidence 479999999999999886 3443 47899999999999888753 456778887653
No 110
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=82.05 E-value=2.9 Score=41.72 Aligned_cols=57 Identities=21% Similarity=0.106 Sum_probs=44.0
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC------CCCceeecchHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH------PEAQVRNEAAEDFL 266 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~------~~~~~~~~~~~~~~ 266 (521)
.+.+|||+-||.|.++..|. ..|. .+.++|+++.+++..+.+. +...+++.|+.++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la----~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLA----ELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred CCCEEEEeCCCchHHHHHHH----HcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 45699999999999988775 5665 4579999999998887764 23456777887764
No 111
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=81.91 E-value=1.6 Score=45.23 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=34.1
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
.++||++||.|.++..+. ...- -..+.|+|+++.|++.-+.|.
T Consensus 135 ~~VLDlG~GsG~iai~la----~~~p-~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 135 TRILDLCTGSGCIAIACA----YAFP-DAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred CEEEEEechhhHHHHHHH----HHCC-CCEEEEEeCCHHHHHHHHHHH
Confidence 479999999999998875 2211 125789999999999999884
No 112
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=81.74 E-value=2.8 Score=42.07 Aligned_cols=59 Identities=22% Similarity=0.150 Sum_probs=47.3
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCC-----CceeecchHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPE-----AQVRNEAAEDFL 266 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~-----~~~~~~~~~~~~ 266 (521)
...++||+.||.|=+++.+. +.+| +. -+.++|+++..++.-+....+ ...+..||+.+-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~---k~~g-~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLA---KSVG-TG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP 114 (238)
T ss_pred CCCEEEEecCCccHHHHHHH---HhcC-Cc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence 56899999999999999886 4555 32 578999999999999988776 446788888553
No 113
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=81.36 E-value=3.5 Score=41.00 Aligned_cols=59 Identities=19% Similarity=-0.038 Sum_probs=43.7
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC------CCceeecchHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP------EAQVRNEAAEDFLE 267 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~------~~~~~~~~~~~~~~ 267 (521)
-++|++.+|+|..++.+..++..+| .+.++|+++.+.+.-+.|+- ...++..|+.+.+.
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g----~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDG----RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD 134 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCC----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence 3899999999998887753333333 57899999999988887753 24567788877764
No 114
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=81.24 E-value=2.4 Score=41.27 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=38.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAED 264 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~ 264 (521)
-+|||+.||.|.++.-+.+ ..|-. ..+.++|+++.+++..+.|. ++..+++.|+++
T Consensus 47 ~~vLDiGcG~G~~~~~la~---~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAE---AVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME 107 (231)
T ss_pred CEEEEeCCCcCHHHHHHHH---HhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhc
Confidence 4899999999998876642 22211 14689999999887776654 344566666654
No 115
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=80.97 E-value=2.1 Score=40.78 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=30.2
Q ss_pred cccEEeeeccCChhhHHHHHhhh-hcCCc------ceEEEEEcCCHHHHHHHHHcC
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAK-LSCTN------LVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~-~aG~~------~~~~~avd~d~~a~~t~~~N~ 252 (521)
.-.++|-|||.|.+-+ +++. .+.+- -...+++|+++.+++.-+.|.
T Consensus 29 ~~~vlDP~CGsGtili---Eaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~ 81 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILI---EAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL 81 (179)
T ss_dssp TS-EEETT-TTSHHHH---HHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH
T ss_pred CCEEeecCCCCCHHHH---HHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH
Confidence 3489999999999865 2222 22221 012789999999999988884
No 116
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=80.66 E-value=2.5 Score=44.29 Aligned_cols=47 Identities=19% Similarity=0.079 Sum_probs=35.5
Q ss_pred CCCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 201 HKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 201 ~~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
...+.++||+-||+|++..-+ +.+..|. .+.|+|+|+.|++.-+.|.
T Consensus 112 ~~~~~~vLDIGtGag~I~~lL--a~~~~~~---~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLI--GVHEYGW---RFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCCCceEEEecCCccHHHHHH--HhhCCCC---EEEEEeCCHHHHHHHHHHH
Confidence 345689999999999887655 3333454 3679999999999888773
No 117
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=80.49 E-value=2.3 Score=46.01 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=34.5
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-+|||++||.||.++-+.. ..+ . -.++|+|+++..++..+.|.
T Consensus 240 ~~VLDlcag~G~kt~~la~---~~~-~-~~v~a~D~~~~~l~~~~~n~ 282 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILE---LAP-Q-AQVVALDIHEHRLKRVYENL 282 (426)
T ss_pred CeEEEeCCCccHHHHHHHH---HcC-C-CeEEEEeCCHHHHHHHHHHH
Confidence 4899999999999987642 233 1 15789999999999998885
No 118
>PRK04266 fibrillarin; Provisional
Probab=80.48 E-value=4 Score=40.47 Aligned_cols=54 Identities=11% Similarity=-0.022 Sum_probs=37.5
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc---CCCCceeecchH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN---HPEAQVRNEAAE 263 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N---~~~~~~~~~~~~ 263 (521)
-+|||+.||.|+++..+.. ..+ . -.++|+|+++.+++....+ .++...+.+|+.
T Consensus 74 ~~VlD~G~G~G~~~~~la~---~v~-~-g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~ 130 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSD---IVE-E-GVVYAVEFAPRPMRELLEVAEERKNIIPILADAR 130 (226)
T ss_pred CEEEEEccCCCHHHHHHHH---hcC-C-CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCC
Confidence 4899999999999988752 222 1 2689999999877655433 345555566654
No 119
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=80.42 E-value=2.8 Score=41.50 Aligned_cols=47 Identities=30% Similarity=0.301 Sum_probs=36.0
Q ss_pred CCCcccEEeeeccCChh--hHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 201 HKAELALLDLYSGCGGM--STGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 201 ~~~~l~vldLFsG~GG~--s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
.+.++++-|=|||.|.+ .+||. -+-++.-++|.|||+.|++.-++|-
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLL-----h~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLL-----HRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHH-----TGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHh-----hhHHHHhHhcccCCHHHHHHHHHhh
Confidence 46899999999999998 66764 3334668999999999999999995
No 120
>PRK01581 speE spermidine synthase; Validated
Probab=80.27 E-value=33 Score=36.72 Aligned_cols=43 Identities=19% Similarity=0.045 Sum_probs=30.4
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKL 250 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~ 250 (521)
.+-+||++=+|.|+....+ ++..+ +..+.+||+|+..++.-+.
T Consensus 150 ~PkrVLIIGgGdG~tlrel---Lk~~~--v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 150 DPKRVLILGGGDGLALREV---LKYET--VLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCEEEEECCCHHHHHHHH---HhcCC--CCeEEEEeCCHHHHHHHHh
Confidence 3448999988877754433 23333 3478899999998888775
No 121
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=80.12 E-value=4.5 Score=41.89 Aligned_cols=61 Identities=18% Similarity=0.082 Sum_probs=45.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC---CCceeecchHHHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP---EAQVRNEAAEDFLELV 269 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~---~~~~~~~~~~~~~~~~ 269 (521)
-.++|.-||.||-+..+-. ..+-+ -.+.|+|.|+.|++..+.+.- ...+++.+..++..++
T Consensus 21 ~~vlD~TlG~GGhS~~il~---~~~~~-g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILE---RLGPK-GRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred CEEEEeCcCChHHHHHHHH---hCCCC-CEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 4899999999999998852 22211 157899999999999886642 4567888888887554
No 122
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=79.89 E-value=9.6 Score=35.68 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=36.5
Q ss_pred CCCCCCcccccccCcceeEEEEEECCEEEeCCCEEEEec--CCCccEEEEEeEEe
Q 046469 25 GAYSDDDEDKIVSNVECHYAQARIGECIFDLGDCAYIKG--EGTQKHIGKILEFF 77 (521)
Q Consensus 25 ~~~~~~~~~~i~~~~r~~Y~~~~vdG~~Y~vGD~VyV~~--~~~p~~IarI~~i~ 77 (521)
...+++-++.|.........+..+....++.||.|.+.. +....+|-||..+-
T Consensus 24 ~v~g~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~iKRVig~p 78 (163)
T TIGR02227 24 KIPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYVKRVIGLP 78 (163)
T ss_pred EECCcccccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeEEEEEecC
Confidence 455556666665555555666666567789999988886 34567899998864
No 123
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=79.38 E-value=4.5 Score=39.34 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=39.5
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAED 264 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~ 264 (521)
.-++||+.||.|.++.-|.. ..+-+ -.++++|+++.+++..+.|. .+..+++.|+.+
T Consensus 78 ~~~VLDiG~GsG~~a~~la~---~~~~~-g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAE---IVGRD-GLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred cCEEEEECCCccHHHHHHHH---HhCCC-CEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 34899999999999986642 22221 13789999999888776663 245566666654
No 124
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=78.90 E-value=2.4 Score=42.40 Aligned_cols=45 Identities=24% Similarity=0.238 Sum_probs=34.7
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
...++||+.||.|.++..+. ...- -..+.++|+++.+++..+.|.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la----~~~~-~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALA----KERP-DAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHH----HHCC-CCEEEEEECCHHHHHHHHHHH
Confidence 34589999999999888775 2221 125789999999999988874
No 125
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=78.54 E-value=2.1 Score=41.77 Aligned_cols=52 Identities=17% Similarity=-0.034 Sum_probs=38.4
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFL 266 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~ 266 (521)
-+||||-||.|+++.-+. +..|- .-.+.|+|+++ ..+.|+..+++.|+.+..
T Consensus 53 ~~VLDlG~GtG~~t~~l~---~~~~~-~~~V~aVDi~~------~~~~~~v~~i~~D~~~~~ 104 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAV---TQIGD-KGRVIACDILP------MDPIVGVDFLQGDFRDEL 104 (209)
T ss_pred CEEEEEcccCCHHHHHHH---HHcCC-CceEEEEeccc------ccCCCCcEEEecCCCChH
Confidence 379999999999988664 23332 12678999998 235678888999988753
No 126
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=78.24 E-value=3 Score=44.28 Aligned_cols=59 Identities=25% Similarity=0.150 Sum_probs=44.6
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC----C-CCceeecchHHHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH----P-EAQVRNEAAEDFLE 267 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~----~-~~~~~~~~~~~~~~ 267 (521)
..+++|-|||.|--..=+ +.++|.. .++++|++|.|+++.+.|. + +..++++||+.++.
T Consensus 53 ~~~v~DalsatGiRgIRy---a~E~~~~--~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~ 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRY---AVETGVV--KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH 116 (380)
T ss_pred CeEEeecccccchhHhhh---hhhcCcc--EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH
Confidence 789999999988532222 2357753 7899999999999998773 2 45678889998874
No 127
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=78.14 E-value=4.4 Score=40.95 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=44.9
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAED 264 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~ 264 (521)
...++||+=||.|.++..|..-+...+. ..+.++|+++.+++.-+.++|+..+...|+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~--~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~ 144 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITT--MQLFGLDISKVAIKYAAKRYPQVTFCVASSHR 144 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccC--CeEEEECCCHHHHHHHHHhCCCCeEEEeeccc
Confidence 3357999999999998887522222221 14689999999999999999988777777664
No 128
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=77.92 E-value=4.5 Score=38.91 Aligned_cols=41 Identities=24% Similarity=0.080 Sum_probs=33.2
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
..++||+-||.|..+.-|. +.|. .+.|+|+++.+++..+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~La----~~g~---~V~gvD~S~~~i~~a~~~ 71 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLA----ANGF---DVTAWDKNPMSIANLERI 71 (197)
T ss_pred CCcEEEECCCCCHHHHHHH----HCCC---EEEEEeCCHHHHHHHHHH
Confidence 4589999999999988775 5675 467999999988876654
No 129
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=77.86 E-value=3.4 Score=44.29 Aligned_cols=42 Identities=24% Similarity=0.191 Sum_probs=33.3
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
++|||.||.|.++..+. +.+-.. .+.++|+++.|++.-+.|.
T Consensus 231 ~VLDLGCGtGvi~i~la----~~~P~~-~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 231 EIVDLGCGNGVIGLTLL----DKNPQA-KVVFVDESPMAVASSRLNV 272 (378)
T ss_pred eEEEEeccccHHHHHHH----HhCCCC-EEEEEECCHHHHHHHHHHH
Confidence 89999999999988764 332112 5789999999999988874
No 130
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=76.98 E-value=4.9 Score=40.02 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=35.3
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPE 254 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~ 254 (521)
...++||+-||.|+++.-+. +.|.. .++|+|+.+..+..-..++|.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~----~~ga~--~v~avD~~~~~l~~~l~~~~~ 120 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCAL----QKGAK--EVYGVDVGYNQLAEKLRQDER 120 (228)
T ss_pred CCCEEEEcccCCCHHHHHHH----HcCCC--EEEEEeCCHHHHHHHHhcCCC
Confidence 44589999999999999775 56754 789999999766654444554
No 131
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=76.97 E-value=12 Score=39.61 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=35.3
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
..-+|||+||+.||=++=+-+-+..-| .+++|+|+++.-+...+.|-
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~---~iV~A~D~~~~Rl~~l~~nl 202 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEG---AIVVAVDVSPKRLKRLRENL 202 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCC---ceEEEEcCCHHHHHHHHHHH
Confidence 336999999999999987642222112 25699999999999988883
No 132
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=76.37 E-value=3.8 Score=43.21 Aligned_cols=42 Identities=24% Similarity=0.216 Sum_probs=32.5
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
++|||.||.|.++..+. +.+-.. .+.++|+++.|++.-+.|.
T Consensus 199 ~VLDlGCG~G~ls~~la----~~~p~~-~v~~vDis~~Al~~A~~nl 240 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLA----RHSPKI-RLTLSDVSAAALESSRATL 240 (342)
T ss_pred eEEEeccCcCHHHHHHH----HhCCCC-EEEEEECCHHHHHHHHHHH
Confidence 79999999999988764 222112 4789999999998887764
No 133
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=75.73 E-value=4.2 Score=39.41 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=35.6
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP 253 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~ 253 (521)
...+|||+.||.|.++..|. +.|. .+.++|+++.+++..+.+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~----~~~~---~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA----RRGA---KVVASDISPQMVEEARERAP 106 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH----HcCC---EEEEEECCHHHHHHHHHHHH
Confidence 34689999999999988774 5664 37899999999988887754
No 134
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=75.70 E-value=3.8 Score=40.21 Aligned_cols=38 Identities=11% Similarity=-0.058 Sum_probs=32.2
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLK 249 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~ 249 (521)
-++||+.||.|--+.-|- +.|++ +.|+|+++.|++...
T Consensus 36 ~rvLd~GCG~G~da~~LA----~~G~~---V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLA----EQGHR---VLGVELSEIAVEQFF 73 (213)
T ss_pred CeEEEeCCCchhHHHHHH----hCCCe---EEEEeCCHHHHHHHH
Confidence 499999999998888774 78985 569999999999753
No 135
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=75.65 E-value=6.4 Score=37.57 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=41.7
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC---CCceeecchHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP---EAQVRNEAAED 264 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~---~~~~~~~~~~~ 264 (521)
...++||+.||.|..+.-+. ..+.....+.++|+++.+++..+.+.+ ...+++.|+.+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~----~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELA----KSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA 99 (223)
T ss_pred CCCeEEEeCCCCChhHHHHH----HhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc
Confidence 45699999999999988775 343321257899999999998888764 33455555543
No 136
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=74.80 E-value=4.3 Score=40.90 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=46.0
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC---CCCceeecchHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH---PEAQVRNEAAEDF 265 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~---~~~~~~~~~~~~~ 265 (521)
....|+|+..|.|.++.-|. ..| + -+.++|+|+..++.++..+ ++..++++|+.++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~----~~~-~--~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELL----KRG-K--RVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHH----HHS-S--EEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTS
T ss_pred CCCEEEEeCCCCccchhhHh----ccc-C--cceeecCcHhHHHHHHHHhhhcccceeeecchhcc
Confidence 56789999999999999986 565 3 6789999999999999965 5677888888754
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=74.67 E-value=8.6 Score=38.94 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=41.1
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC---------CCceeecchHHHH
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP---------EAQVRNEAAEDFL 266 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~---------~~~~~~~~~~~~~ 266 (521)
+||++.+|.|++..-+. ..+ .+..+.++|+|+..++..+.++| ...++.+|+..++
T Consensus 75 ~VL~iG~G~G~~~~~ll----~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l 139 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVL----KHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL 139 (270)
T ss_pred EEEEEcCCchHHHHHHH----hCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH
Confidence 99999999999876553 232 13367899999999888887764 3456667777666
No 138
>PRK14968 putative methyltransferase; Provisional
Probab=74.51 E-value=4.3 Score=37.79 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=33.3
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-++||+.||.|.++..+. ..|. .+.++|+++.+.+..+.|.
T Consensus 25 ~~vLd~G~G~G~~~~~l~----~~~~---~v~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAA----KNGK---KVVGVDINPYAVECAKCNA 65 (188)
T ss_pred CEEEEEccccCHHHHHHH----hhcc---eEEEEECCHHHHHHHHHHH
Confidence 379999999999988775 3353 4679999999998887774
No 139
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=74.31 E-value=6.9 Score=37.66 Aligned_cols=57 Identities=23% Similarity=0.181 Sum_probs=41.3
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCC-CceeecchHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPE-AQVRNEAAED 264 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~-~~~~~~~~~~ 264 (521)
.+.+|||+-||.|.++.-+. ..+.+. .+.++|+++.+++..+.+.+. ..++..|+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~----~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALL----KRFPQA-EFIALDISAGMLAQAKTKLSENVQFICGDAEK 91 (240)
T ss_pred CCCeEEEECCCccHHHHHHH----HhCCCC-cEEEEeChHHHHHHHHHhcCCCCeEEecchhh
Confidence 34689999999999988775 445432 478999999998877776653 3455566554
No 140
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=74.19 E-value=2.4 Score=46.69 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=44.2
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC-----CCceeecchHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP-----EAQVRNEAAEDFLE 267 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~-----~~~~~~~~~~~~~~ 267 (521)
-.++|+|||.|-+++.+. .|+. .+.++|+++.|+.--+.|-- ++..++.-+|+.+.
T Consensus 385 k~llDv~CGTG~iglala-----~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALA-----RGVK--RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP 445 (534)
T ss_pred cEEEEEeecCCceehhhh-----cccc--ceeeeecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence 479999999999999884 6755 78999999998887776632 45677777887663
No 141
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=73.89 E-value=4.1 Score=38.89 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=28.6
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHH
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLK 249 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~ 249 (521)
.|||.|+|.|-..++-. +.|-+ ..++|+++.+++..+
T Consensus 194 iVlDpF~GSGTT~~aa~----~l~R~---~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 194 IVLDPFAGSGTTAVAAE----ELGRR---YIGIEIDEEYCEIAK 230 (231)
T ss_dssp EEEETT-TTTHHHHHHH----HTT-E---EEEEESSHHHHHHHH
T ss_pred eeehhhhccChHHHHHH----HcCCe---EEEEeCCHHHHHHhc
Confidence 69999999988777654 78865 569999999988754
No 142
>PRK04148 hypothetical protein; Provisional
Probab=73.70 E-value=8.5 Score=35.28 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=37.9
Q ss_pred CcccEEeeeccCCh-hhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecch
Q 046469 203 AELALLDLYSGCGG-MSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAA 262 (521)
Q Consensus 203 ~~l~vldLFsG~GG-~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~ 262 (521)
+..+++++=+|.|. ++.-|. +.|++ +.|+|+++.|++..+.+. ..++..|+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~----~~G~~---ViaIDi~~~aV~~a~~~~--~~~v~dDl 67 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK----ESGFD---VIVIDINEKAVEKAKKLG--LNAFVDDL 67 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH----HCCCE---EEEEECCHHHHHHHHHhC--CeEEECcC
Confidence 34689999999775 666554 78874 569999999999888774 44555554
No 143
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=73.30 E-value=5.2 Score=43.42 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=33.0
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
++||++||.|.++..+.. ...+. .+.|+|+++.|++.-+.|.
T Consensus 254 rVLDLGcGSG~IaiaLA~--~~p~a---~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVAL--ERPDA---FVRASDISPPALETARKNA 295 (423)
T ss_pred EEEEEeChhhHHHHHHHH--hCCCC---EEEEEECCHHHHHHHHHHH
Confidence 899999999999887641 11222 4689999999999998884
No 144
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=72.75 E-value=6 Score=39.38 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=38.0
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAEDF 265 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~~ 265 (521)
...+|||+.||.|-++.-+. +..|-+. .+.++|+++..++.-+... .+...++.|++++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~---~~~~~~~-~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l 110 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELA---RRVGPNG-KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL 110 (233)
T ss_dssp S--EEEEET-TTSHHHHHHG---GGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-
T ss_pred CCCEEEEeCCChHHHHHHHH---HHCCCcc-EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh
Confidence 34599999999999988774 2444322 5789999999888877553 3556778888865
No 145
>PLN02823 spermine synthase
Probab=72.66 E-value=67 Score=33.91 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=29.0
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP 253 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~ 253 (521)
-+||-|=.|.|++..-+ ++..+. ..+.++|+|+...+..+.++|
T Consensus 105 k~VLiiGgG~G~~~re~---l~~~~~--~~v~~VEiD~~vv~lar~~~~ 148 (336)
T PLN02823 105 KTVFIMGGGEGSTAREV---LRHKTV--EKVVMCDIDQEVVDFCRKHLT 148 (336)
T ss_pred CEEEEECCCchHHHHHH---HhCCCC--CeEEEEECCHHHHHHHHHhcc
Confidence 36766555555544422 223343 368899999999999998875
No 146
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=72.27 E-value=6.2 Score=40.79 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=41.9
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC------CCCceeecchHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH------PEAQVRNEAAEDF 265 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~------~~~~~~~~~~~~~ 265 (521)
-+|||+-||.|.++.-+. ..+. .+.|+|+|+.+++..+.++ +...+++.|+.++
T Consensus 38 ~~VLEIG~G~G~LT~~Ll----~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLL----QLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CEEEEecCchHHHHHHHH----HhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 479999999999988764 3443 4689999999999887654 3567888888653
No 147
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=72.20 E-value=5.4 Score=44.32 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=36.4
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhc----CCcceEEEEEcCCHHHHHHHHHc
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLS----CTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~a----G~~~~~~~avd~d~~a~~t~~~N 251 (521)
...+++|.+||+|++-.++-.-+... ++. ..++++|+|+.|+...+.|
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHH
Confidence 56799999999999988775433221 121 3578999999999988877
No 148
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=72.02 E-value=5.3 Score=39.14 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=33.4
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
..++||+.||.|.+..-+.. ...- ..+.++|+++.+++..+.|.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~---~~~~--~~v~~iD~~~~~~~~a~~~~ 131 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAK---ERPD--ARVTAVDISPEALAVARKNA 131 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHH---HCCC--CEEEEEECCHHHHHHHHHHH
Confidence 35899999999999887751 1111 25789999999998887763
No 149
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=72.00 E-value=5.9 Score=39.92 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=39.1
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC--------CCCceeecchHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH--------PEAQVRNEAAED 264 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~--------~~~~~~~~~~~~ 264 (521)
.-++||+.||.|.++.-+. ...|-+ ..+.|+|+++..++..+.+. ++..+.+.|+++
T Consensus 74 ~~~VLDlGcGtG~~~~~la---~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLS---EKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred CCEEEEECCcCCHHHHHHH---HHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 4589999999999877553 223322 15789999999998876543 234556666654
No 150
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=71.71 E-value=6.5 Score=38.03 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=32.1
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-++||+.||.|..+.-+...+...| .+.++|+++.+++.-+.|.
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g----~V~~iD~~~~~~~~a~~~l 117 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRG----KVYTVEIVKELAIYAAQNI 117 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCC----EEEEEeCCHHHHHHHHHHH
Confidence 4799999999999876642111122 5789999999887766664
No 151
>PLN02244 tocopherol O-methyltransferase
Probab=71.65 E-value=6 Score=41.54 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=38.1
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC------CCCceeecchHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH------PEAQVRNEAAED 264 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~------~~~~~~~~~~~~ 264 (521)
..-+|||+-||.|+++.-|. +..|. .+.++|+++.+++..+.+. +...+++.|+.+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La---~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLA---RKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred CCCeEEEecCCCCHHHHHHH---HhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 44589999999999988775 12354 4579999999877655432 234455666553
No 152
>PRK08317 hypothetical protein; Provisional
Probab=71.42 E-value=8 Score=37.11 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=37.8
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc----CCCCceeecchH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN----HPEAQVRNEAAE 263 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N----~~~~~~~~~~~~ 263 (521)
..+|||+.||.|.++..+.. ..|-. ..+.++|+++..++.-+.+ .+...+.+.|++
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~---~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELAR---RVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD 79 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHH---hcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc
Confidence 45899999999998887641 22211 2578999999988777665 334445555554
No 153
>PTZ00146 fibrillarin; Provisional
Probab=70.84 E-value=8.8 Score=39.73 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=36.6
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHH---HcCCCCceeecchH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLK---LNHPEAQVRNEAAE 263 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~---~N~~~~~~~~~~~~ 263 (521)
.+||||.||.|..+.-+.. ..|-. -.++|+|+++.+.+-+. ...++...+.+|+.
T Consensus 134 ~~VLDLGaG~G~~t~~lAd---iVG~~-G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~ 191 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSD---LVGPE-GVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR 191 (293)
T ss_pred CEEEEeCCcCCHHHHHHHH---HhCCC-CEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 5899999999999887752 32211 26899999986442221 12356667777775
No 154
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=70.48 E-value=5.1 Score=44.54 Aligned_cols=44 Identities=30% Similarity=0.284 Sum_probs=34.1
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
..+|||++||.|.++..+.. ...+. .+.|+|+++.|++.-+.|.
T Consensus 139 ~~~VLDlG~GsG~iai~la~--~~p~~---~v~avDis~~al~~A~~N~ 182 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC--ELPNA---NVIATDISLDAIEVAKSNA 182 (506)
T ss_pred CCEEEEccCchhHHHHHHHH--HCCCC---eEEEEECCHHHHHHHHHHH
Confidence 35899999999999987741 11232 4689999999999998873
No 155
>PRK10708 hypothetical protein; Provisional
Probab=70.48 E-value=12 Score=29.11 Aligned_cols=43 Identities=21% Similarity=0.484 Sum_probs=34.4
Q ss_pred eCCCEEEEecCCCccEEEEEeEEeeCCCCeEEE-------EEEEEeeccc
Q 046469 54 DLGDCAYIKGEGTQKHIGKILEFFKTTDGEEYF-------RVQWFYRAED 96 (521)
Q Consensus 54 ~vGD~VyV~~~~~p~~IarI~~i~~~~~g~~~v-------~v~WFyRped 96 (521)
+++|.|.|+.++.|-..|.|..+-.-..|.+++ .+-||+--.+
T Consensus 2 kvnD~VtVKTDG~~rR~G~iLavE~F~EG~MyLvaL~dYP~GiWFFNE~~ 51 (62)
T PRK10708 2 KVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAG 51 (62)
T ss_pred ccccEEEEecCCCccccceEEEEeeccCcEEEEEEcCcCCCceEEEeccC
Confidence 688999999999999999999988776776654 4678875444
No 156
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=69.76 E-value=4.2 Score=38.55 Aligned_cols=51 Identities=18% Similarity=0.000 Sum_probs=35.5
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAED 264 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~ 264 (521)
.-+|||+-||.|+++.-+.. ..+- ...++++|+++.. ..++..+++.|+.+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~---~~~~-~~~v~~vDis~~~------~~~~i~~~~~d~~~ 83 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVE---QVGG-KGRVIAVDLQPMK------PIENVDFIRGDFTD 83 (188)
T ss_pred CCEEEEecCCCCHHHHHHHH---HhCC-CceEEEEeccccc------cCCCceEEEeeCCC
Confidence 34899999999999887641 2211 1257899999854 45667777777754
No 157
>PRK10742 putative methyltransferase; Provisional
Probab=69.20 E-value=7.7 Score=39.24 Aligned_cols=43 Identities=14% Similarity=0.014 Sum_probs=34.6
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
...+|||+|+|-|..+.=+- ..|.+ +.++|-++.+....+.|.
T Consensus 88 ~~p~VLD~TAGlG~Da~~la----s~G~~---V~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 88 YLPDVVDATAGLGRDAFVLA----SVGCR---VRMLERNPVVAALLDDGL 130 (250)
T ss_pred CCCEEEECCCCccHHHHHHH----HcCCE---EEEEECCHHHHHHHHHHH
Confidence 44699999999998877443 67865 679999999999888774
No 158
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=69.08 E-value=8.5 Score=37.15 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=35.7
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP 253 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~ 253 (521)
...++||+.||.|.++.-+. ..+-....+.++|+++.+++..+.+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~----~~~~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALA----KAVGKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHH----HHcCCCCeEEEEeCCHHHHHHHHHhhc
Confidence 34799999999999988765 333212368899999999888888753
No 159
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=68.64 E-value=7.1 Score=38.47 Aligned_cols=38 Identities=13% Similarity=-0.056 Sum_probs=31.9
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLK 249 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~ 249 (521)
-+||++.||.|--++-|- +.|++ +.|+|+++.|++...
T Consensus 39 ~rvL~~gCG~G~da~~LA----~~G~~---V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLA----EQGHE---VLGVELSELAVEQFF 76 (218)
T ss_pred CeEEEeCCCChHhHHHHH----hCCCe---EEEEccCHHHHHHHH
Confidence 499999999998877664 67875 569999999999753
No 160
>PRK04457 spermidine synthase; Provisional
Probab=68.26 E-value=11 Score=38.23 Aligned_cols=58 Identities=9% Similarity=0.109 Sum_probs=43.0
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC------CCceeecchHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP------EAQVRNEAAEDFLE 267 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~------~~~~~~~~~~~~~~ 267 (521)
-++|+|=+|.|.++.-+.. ... -..+.++|+|+..++..+.+|. ...+++.|+.++++
T Consensus 68 ~~vL~IG~G~G~l~~~l~~---~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~ 131 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYT---YLP--DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA 131 (262)
T ss_pred CEEEEECCCHhHHHHHHHH---hCC--CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH
Confidence 4799999998888876641 222 1246899999999999888753 34678899988874
No 161
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=68.10 E-value=6.8 Score=41.21 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=29.3
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKL 250 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~ 250 (521)
...+||||+||=||=-.=+. .+++. -++++|++..+++--+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~----~~~i~--~~vg~Dis~~si~ea~~ 103 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQ----KAKIK--HYVGIDISEESIEEARE 103 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHH----HTT-S--EEEEEES-HHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHH----hcCCC--EEEEEeCCHHHHHHHHH
Confidence 77899999999888555454 67766 88999999887765443
No 162
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=68.04 E-value=4.3 Score=40.16 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=28.3
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLK 249 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~ 249 (521)
..-+++|+|||+|.+++.+. .. ...++++|+++.....++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~----~~---~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLK----QP---GKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----------SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhc----cc---ccceeeeechHHHHHHHH
Confidence 45689999999999888663 22 336789999999888777
No 163
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=67.09 E-value=12 Score=35.60 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=36.9
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAED 264 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~ 264 (521)
-++||+-||.|.+..-+. ...+. .++++|+++.+++..+.+ +..+++.|+++
T Consensus 15 ~~iLDiGcG~G~~~~~l~---~~~~~---~~~giD~s~~~i~~a~~~--~~~~~~~d~~~ 66 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLR---DEKQV---RGYGIEIDQDGVLACVAR--GVNVIQGDLDE 66 (194)
T ss_pred CEEEEeCCCCCHHHHHHH---hccCC---cEEEEeCCHHHHHHHHHc--CCeEEEEEhhh
Confidence 379999999999887663 12233 347999999988777654 34566667654
No 164
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=66.80 E-value=17 Score=28.21 Aligned_cols=43 Identities=26% Similarity=0.526 Sum_probs=34.3
Q ss_pred eCCCEEEEecCCCccEEEEEeEEeeCCCCeEEE-------EEEEEeeccc
Q 046469 54 DLGDCAYIKGEGTQKHIGKILEFFKTTDGEEYF-------RVQWFYRAED 96 (521)
Q Consensus 54 ~vGD~VyV~~~~~p~~IarI~~i~~~~~g~~~v-------~v~WFyRped 96 (521)
+++|.|.|+.++.|-.-|.|..+-+-..|.+++ .+-||+--.+
T Consensus 2 kvnD~VtVKTDG~~rR~G~ilavE~F~EG~MYLvaL~dYP~GiWFFNE~~ 51 (62)
T PF10781_consen 2 KVNDRVTVKTDGGPRREGVILAVEPFNEGTMYLVALEDYPAGIWFFNEKD 51 (62)
T ss_pred ccccEEEEecCCcccccceEEEEeeccCcEEEEEEcCcCCcceEEEecCC
Confidence 688999999999999999999987776776654 4678876544
No 165
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=66.52 E-value=15 Score=35.60 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=44.0
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc-----CCCCceeecchHHHH
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN-----HPEAQVRNEAAEDFL 266 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N-----~~~~~~~~~~~~~~~ 266 (521)
.++|+=||+|.++.-+- .+|-+ -.++|+|-++.|+++.+.| .++..++..+|.+.|
T Consensus 37 ~l~DIGaGtGsi~iE~a----~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 37 RLWDIGAGTGSITIEWA----LAGPS-GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred EEEEeCCCccHHHHHHH----HhCCC-ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 79999888887776442 44543 3589999999999999988 456778889998887
No 166
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=66.08 E-value=8 Score=38.50 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=39.5
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC------CCceeecchHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP------EAQVRNEAAED 264 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~------~~~~~~~~~~~ 264 (521)
-+|||+=||.|..+..+...+...+. .+.++|+++.+++.-+.+.. ...+++.|+.+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~---~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~ 120 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 120 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh
Confidence 47999999999988766421112333 47799999999988877653 24456666654
No 167
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=65.39 E-value=15 Score=29.51 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=37.4
Q ss_pred EeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCc--eeecchHHH
Q 046469 208 LDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQ--VRNEAAEDF 265 (521)
Q Consensus 208 ldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~--~~~~~~~~~ 265 (521)
||+=||.|-.+..|. +.+.. .++++|+++.+++..+.+..... +.+.|++++
T Consensus 1 LdiG~G~G~~~~~l~----~~~~~--~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALA----KRGGA--SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL 54 (95)
T ss_dssp EEET-TTSHHHHHHH----HTTTC--EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS
T ss_pred CEecCcCCHHHHHHH----hccCC--EEEEEeCCHHHHHHHHhcccccCchheeehHHhC
Confidence 678889888888775 44332 68899999999999999887554 666666654
No 168
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=65.04 E-value=15 Score=35.04 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=41.3
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc-----CCCCceeecchHHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN-----HPEAQVRNEAAEDFL 266 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N-----~~~~~~~~~~~~~~~ 266 (521)
+.++||+-||.|.++..+.. +..+. .+.++|+++.+++.-+.+ .++..+++.|+.+++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~--~~p~~---~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~ 79 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAK--QNPDK---NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL 79 (194)
T ss_pred CceEEEeCCCccHHHHHHHH--hCCCC---CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH
Confidence 34899999999999887741 11222 468999999876655433 345677888888765
No 169
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=64.82 E-value=20 Score=34.96 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=39.3
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC----CCceeecchHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP----EAQVRNEAAEDFL 266 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~----~~~~~~~~~~~~~ 266 (521)
...++||+.||.|.++.-+. +.|. .+.++|+++.+++..+.|.. ...+...++.++.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~----~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 108 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMA----RLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA 108 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHH----HcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh
Confidence 45689999999999877664 4554 36899999999887776543 2234455555443
No 170
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=64.63 E-value=11 Score=36.69 Aligned_cols=40 Identities=28% Similarity=0.135 Sum_probs=31.1
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLK 249 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~ 249 (521)
.+-++|||=||-|--++=|- +.|+. +.|+|+++.|++..+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA----~~G~~---VtAvD~s~~al~~l~ 69 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLA----SQGFD---VTAVDISPVALEKLQ 69 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHH----HTT-E---EEEEESSHHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHH----HCCCe---EEEEECCHHHHHHHH
Confidence 45699999999999999775 88986 469999999987654
No 171
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=64.57 E-value=15 Score=35.48 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=39.1
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC-----CCceeecchHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP-----EAQVRNEAAEDF 265 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~-----~~~~~~~~~~~~ 265 (521)
...++||+.||.|.+..-+. +.|.+ +.++|.++.+++..+.+.. ...+.+.++.++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~----~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 105 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLA----RLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL 105 (224)
T ss_pred CCCeEEEECCCCCHHHHHHH----hcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence 46799999999999887664 45543 6799999988877766532 233445555544
No 172
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=62.65 E-value=10 Score=38.60 Aligned_cols=39 Identities=31% Similarity=0.221 Sum_probs=32.2
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
++||+-||.|..+.-|- ..|.+ +.|+|+++.|++..+.+
T Consensus 123 ~vLDlGcG~G~~~~~la----~~g~~---V~avD~s~~ai~~~~~~ 161 (287)
T PRK12335 123 KALDLGCGQGRNSLYLA----LLGFD---VTAVDINQQSLENLQEI 161 (287)
T ss_pred CEEEeCCCCCHHHHHHH----HCCCE---EEEEECCHHHHHHHHHH
Confidence 89999999999988764 56754 67999999998877655
No 173
>PLN02476 O-methyltransferase
Probab=62.50 E-value=19 Score=37.06 Aligned_cols=60 Identities=18% Similarity=0.061 Sum_probs=45.4
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC------CCceeecchHHHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP------EAQVRNEAAEDFLE 267 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~------~~~~~~~~~~~~~~ 267 (521)
.-++|++.+|+|..++-+-.++...| .+.++|.++.+.+.-+.|+- ...++..|+.+.|.
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G----~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~ 184 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESG----CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLK 184 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCC----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 34899999999999998764443333 36899999999888887763 34566788887774
No 174
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=61.75 E-value=11 Score=38.61 Aligned_cols=49 Identities=22% Similarity=0.214 Sum_probs=31.6
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhc--CCcceEEEEEcCCHHHHHHHHHc
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLS--CTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~a--G~~~~~~~avd~d~~a~~t~~~N 251 (521)
..-+|+|.+||.|++-..+..-+... -..-..++++|+++.++..-+.|
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHH
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhh
Confidence 44579999999999977654211100 01123688999999999887766
No 175
>PRK06922 hypothetical protein; Provisional
Probab=61.06 E-value=15 Score=42.26 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=40.0
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC----CCceeecchHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP----EAQVRNEAAEDF 265 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~----~~~~~~~~~~~~ 265 (521)
..++||+.||.|.++..+.. ...+. .+.|+|+++.+++..+.+.+ +..+++.|+.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~--~~P~~---kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL 479 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEE--ETEDK---RIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL 479 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHH--hCCCC---EEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC
Confidence 45899999999998876641 11233 56899999999888876532 334566776653
No 176
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=60.99 E-value=15 Score=37.81 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=42.0
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHH----cCCCCce--eecchHHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKL----NHPEAQV--RNEAAEDFLEL 268 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~----N~~~~~~--~~~~~~~~~~~ 268 (521)
.++|||=||.|-.+.-|...+.. |. .+.++|+++.+++..+. .+|+..+ ++.|..+.+.+
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~-~~---~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ-PA---RYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL 130 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc-CC---eEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh
Confidence 47999999999999888622111 33 57899999987655544 4676543 67888766544
No 177
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=60.26 E-value=15 Score=35.79 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=32.8
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
-++||+.||.|.++.-+.. ..|- -..+.++|+++..++..+.|.
T Consensus 78 ~~VLdIG~GsG~~t~~la~---~~~~-~~~V~~vE~~~~~~~~a~~~l 121 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAE---IVGK-SGKVVTIERIPELAEKAKKTL 121 (212)
T ss_pred CEEEEECCcccHHHHHHHH---hcCC-CCEEEEEeCCHHHHHHHHHHH
Confidence 4899999999999876542 2232 125789999999888777764
No 178
>PRK05785 hypothetical protein; Provisional
Probab=59.60 E-value=17 Score=35.87 Aligned_cols=51 Identities=18% Similarity=0.042 Sum_probs=36.9
Q ss_pred cccEEeeeccCChhhHHHHHhhhhc-CCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLS-CTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAED 264 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~a-G~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~ 264 (521)
.-+|||+-||.|-++..+. .. |. .+.++|+++.+++.-+... ..++.|+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~----~~~~~---~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~ 103 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFK----KVFKY---YVVALDYAENMLKMNLVAD---DKVVGSFEA 103 (226)
T ss_pred CCeEEEEcCCCCHHHHHHH----HhcCC---EEEEECCCHHHHHHHHhcc---ceEEechhh
Confidence 3489999999998887764 33 33 5789999999998876642 234555553
No 179
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=58.97 E-value=19 Score=32.12 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=33.3
Q ss_pred CCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHH
Q 046469 202 KAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACES 247 (521)
Q Consensus 202 ~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t 247 (521)
....+|||+=||.|.+...|. ..|. .+.++|+++.+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~----~~~~---~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA----KRGF---EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH----HTTS---EEEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHH----HhCC---EEEEEECCHHHHhh
Confidence 355699999999999988886 7787 46799999999988
No 180
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=58.73 E-value=19 Score=34.43 Aligned_cols=41 Identities=27% Similarity=0.131 Sum_probs=33.2
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
+.++||+=||.|-.+.-+. +.|. .+.|+|+++.+++..+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~la----~~g~---~V~~iD~s~~~l~~a~~~ 71 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLS----LAGY---DVRAWDHNPASIASVLDM 71 (195)
T ss_pred CCcEEEeCCCCCHHHHHHH----HCCC---eEEEEECCHHHHHHHHHH
Confidence 4589999999999988764 5675 468999999999877654
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=58.47 E-value=13 Score=40.74 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=42.6
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHH----HcC--CCCceeecchHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLK----LNH--PEAQVRNEAAEDFL 266 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~----~N~--~~~~~~~~~~~~~~ 266 (521)
+...|+|+=||-|.++.-.-.+++.+|. ...++|||.++.|..+.+ .|. ....+++.|++++-
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~-a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~ 254 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGG-AVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE 254 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCC-ESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCC-CeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC
Confidence 4678999999999997643323334443 347899999999998873 332 24578889988764
No 182
>PLN02366 spermidine synthase
Probab=58.20 E-value=28 Score=36.24 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=44.4
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC---------CCceeecchHHHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP---------EAQVRNEAAEDFLE 267 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~---------~~~~~~~~~~~~~~ 267 (521)
+-+||++=+|.|++..-+. +..+ +.-+..+|+|+..++..+.++| ...++++|+..+++
T Consensus 92 pkrVLiIGgG~G~~~rell---k~~~--v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIA---RHSS--VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCeEEEEcCCccHHHHHHH---hCCC--CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh
Confidence 4589999999999877653 2333 3467899999998888887764 46678888888773
No 183
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=58.15 E-value=25 Score=37.20 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=40.4
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC--CCceeecchHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP--EAQVRNEAAED 264 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~--~~~~~~~~~~~ 264 (521)
...+|||+-||.|.++..+.. ..+-. .+.++|.++.+++.-+.+.+ +..++..|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~---~~~~~--~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~ 171 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVK---HVDAK--NVTILDQSPHQLAKAKQKEPLKECKIIEGDAED 171 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHH---HCCCC--EEEEEECCHHHHHHHHHhhhccCCeEEeccHHh
Confidence 456899999999998887641 22222 57799999998888777653 34556666654
No 184
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=57.90 E-value=6.2 Score=46.27 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=84.9
Q ss_pred EECCEEEeCCCEEEEec-CCCccEEEEEeEEeeCCC-CeEEEEEEEEeecccccccc-----------------ccCCCC
Q 046469 47 RIGECIFDLGDCAYIKG-EGTQKHIGKILEFFKTTD-GEEYFRVQWFYRAEDTVMKE-----------------AADFHD 107 (521)
Q Consensus 47 ~vdG~~Y~vGD~VyV~~-~~~p~~IarI~~i~~~~~-g~~~v~v~WFyRpedt~~~~-----------------~~~~~~ 107 (521)
..++..|.++|.+++.. ..+|+.|+.|-.+-..+. .+++++.-.+.|++|+.... ......
T Consensus 140 s~~e~~y~~~~~l~~~v~~~~p~lia~~~~~~~~Kr~~~~~~k~s~~~r~~d~Pet~y~~~m~pe~Ar~e~~P~~~pq~~ 219 (1229)
T KOG2133|consen 140 SHDETLYDLRDSLFVEVSQPEPYLIAAICGFKYTKRDDRQVVKLSFYFRADDIPETGYLNLMKPERARLEINPHLCPQPL 219 (1229)
T ss_pred cccchhhhhhhhhhhhhccCCccccccccCccccccccccccccccccccccCcccccccccCchhhhhccCCccCCCcc
Confidence 45778999999999888 678899999877765553 57788888999999875111 012346
Q ss_pred cceeEEeCCc-cccccceeeeeeEEEecCCCCCC----CCCCCCCCcEEEeeeeecCCcEEEc
Q 046469 108 RKRLFYSTVM-NDNPVDCIISKVIVAQIPPKIGL----KSNSIPSSDFYFDMEYCVEYSTFRT 165 (521)
Q Consensus 108 ~rELF~S~~~-d~~pv~~I~GKC~V~~~~~~~~~----~~~~~~~~dFyc~~~Yd~~~~~f~~ 165 (521)
.++||.+... -+-|..|..|||.+....+.... .+...+-+.||....|.+.......
T Consensus 220 sq~l~~s~l~~i~qppscp~gk~~~~~skd~~h~~~~n~p~~ld~~i~fk~agglpps~k~a~ 282 (1229)
T KOG2133|consen 220 SQELFNSELQGITQPPSCPRGKGIAEYSKDVRHGGNTNAPFSLDNDIFFKCAGGLPPSTKPAS 282 (1229)
T ss_pred hhhhhcccccCCCCCCcCCCCCceEEeecccccCCccCCCCcccceeeeecccCCCCCCCCCC
Confidence 7889998877 58899999999999955443322 3344455567777888886655544
No 185
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=57.81 E-value=20 Score=36.66 Aligned_cols=43 Identities=26% Similarity=0.135 Sum_probs=33.7
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
-+|||+|||.||-++-+-+-+...| .+.|+|+++..+...+.|
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g----~i~A~D~~~~Rl~~l~~~ 129 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKG----EIVANDISPKRLKRLKEN 129 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTS----EEEEEESSHHHHHHHHHH
T ss_pred ccccccccCCCCceeeeeecccchh----HHHHhccCHHHHHHHHHH
Confidence 3599999999999987753332223 678999999999888776
No 186
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=57.71 E-value=19 Score=34.62 Aligned_cols=43 Identities=21% Similarity=0.048 Sum_probs=32.5
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
..++||+-||.|.++..+.. +..+. .+.++|.++.+++..+.|
T Consensus 46 g~~VLDiGcGtG~~al~la~--~~~~~---~V~giD~s~~~l~~A~~~ 88 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAI--ARPEL---KVTLVDSLGKKIAFLREV 88 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHH--HCCCC---eEEEEeCcHHHHHHHHHH
Confidence 46899999999998887641 12232 578999999988777765
No 187
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=57.39 E-value=23 Score=35.68 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=35.0
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPE 254 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~ 254 (521)
...+|||+-||.|+.+.-+. ...|. .+.++|+++.+++..+.+.+.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la---~~~~~---~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN---EKYGA---HVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH---hhcCC---EEEEEECCHHHHHHHHHHcCc
Confidence 34589999999999887663 12343 468999999999888887653
No 188
>PRK13699 putative methylase; Provisional
Probab=57.15 E-value=15 Score=36.45 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=30.5
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
.|||-|+|.|-...+-. +.|.+ ..++|+++..+++....
T Consensus 166 ~vlDpf~Gsgtt~~aa~----~~~r~---~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 166 IVLDPFAGSGSTCVAAL----QSGRR---YIGIELLEQYHRAGQQR 204 (227)
T ss_pred EEEeCCCCCCHHHHHHH----HcCCC---EEEEecCHHHHHHHHHH
Confidence 69999999988766544 78876 45999999887765544
No 189
>PRK11524 putative methyltransferase; Provisional
Probab=57.03 E-value=14 Score=37.65 Aligned_cols=40 Identities=10% Similarity=-0.042 Sum_probs=32.7
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
.|||-|+|.|-..++-+ +.|-+ ..++|+++.+++.-+...
T Consensus 211 ~VLDPF~GSGTT~~AA~----~lgR~---~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 211 IVLDPFAGSFTTGAVAK----ASGRK---FIGIEINSEYIKMGLRRL 250 (284)
T ss_pred EEEECCCCCcHHHHHHH----HcCCC---EEEEeCCHHHHHHHHHHH
Confidence 59999999987766544 78876 459999999999888775
No 190
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=56.78 E-value=19 Score=37.63 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=37.7
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHH------cCCCCceeecchHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKL------NHPEAQVRNEAAEDF 265 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~------N~~~~~~~~~~~~~~ 265 (521)
-+|||+=||.|..+..+. .+|.. .+.++|.++..+.-.++ +.+...+...+++++
T Consensus 124 ~~VLDIGCG~G~~~~~la----~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l 184 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRML----GAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL 184 (322)
T ss_pred CEEEEeccCCcHHHHHHH----HcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC
Confidence 489999999999988774 56755 57899999876543221 123455566666544
No 191
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=56.54 E-value=26 Score=34.89 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=40.7
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDF 265 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~ 265 (521)
..-+|||+=||.|.++.-+.. ...+. .+.++|+++.+++..+.+ +..+++.|++++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~--~~p~~---~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~ 84 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLAR--RWPGA---VIEALDSSPEMVAAARER--GVDARTGDVRDW 84 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHH--HCCCC---EEEEEECCHHHHHHHHhc--CCcEEEcChhhC
Confidence 335899999999999887641 11133 468999999999887765 456777777654
No 192
>PLN02672 methionine S-methyltransferase
Probab=55.62 E-value=15 Score=44.63 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=34.1
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
.+|+||.||.|.+++.+. ..+-+ ..+.|+|+++.|++..+.|-
T Consensus 120 ~~VLDlG~GSG~Iai~La----~~~~~-~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIA----EKWLP-SKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CEEEEEecchHHHHHHHH----HHCCC-CEEEEEECCHHHHHHHHHHH
Confidence 479999999999999875 22211 25789999999999998774
No 193
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=54.32 E-value=18 Score=30.27 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=34.0
Q ss_pred EEeCCCEEEEecCCCccEEEEEeEEeeCCCCeEEEEEEEEee
Q 046469 52 IFDLGDCAYIKGEGTQKHIGKILEFFKTTDGEEYFRVQWFYR 93 (521)
Q Consensus 52 ~Y~vGD~VyV~~~~~p~~IarI~~i~~~~~g~~~v~v~WFyR 93 (521)
.|++||.|+-+-.+-|+|=|+|...-........+.|+||--
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt 43 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGT 43 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCC
Confidence 478999999999999999999998765433456788888873
No 194
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=54.04 E-value=21 Score=27.48 Aligned_cols=40 Identities=20% Similarity=0.437 Sum_probs=26.9
Q ss_pred EeCCCEEEEecCCCccEEEEEeEEeeCCCCeEEEEEEEEeec
Q 046469 53 FDLGDCAYIKGEGTQKHIGKILEFFKTTDGEEYFRVQWFYRA 94 (521)
Q Consensus 53 Y~vGD~VyV~~~~~p~~IarI~~i~~~~~g~~~v~v~WFyRp 94 (521)
|++||.|.+++-+-+.-|..|..- .....-++.++||---
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~~~--~~~~~~~v~C~WFd~~ 40 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVGPN--AGASGGWVECQWFDGH 40 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEcccc--ccCCCCeEEEEeCCCC
Confidence 579999999975555555555432 1234568999999743
No 195
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=52.60 E-value=7.8 Score=37.93 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=38.0
Q ss_pred CCCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 201 HKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 201 ~~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
.-+..+|||+.+|+|-.+..-- .+|-. -+++.|+++.+.+..+.|-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa----~aGA~--~v~a~d~~P~~~~ai~lNa 122 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAA----RAGAA--EVVAADIDPWLEQAIRLNA 122 (218)
T ss_pred ccccceeeecccccChHHHHHH----HhhhH--HHHhcCCChHHHHHhhcch
Confidence 3455699999999999988643 78865 6799999999999998884
No 196
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=51.57 E-value=28 Score=36.36 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=37.3
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHH------HcCCCCceeecchHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLK------LNHPEAQVRNEAAEDF 265 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~------~N~~~~~~~~~~~~~~ 265 (521)
-+|||+=||.|.+...+. ..|.. .+.++|.++..+..++ .+.+...+...+++++
T Consensus 123 ~~VLDvGCG~G~~~~~~~----~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l 183 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRML----GHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL 183 (314)
T ss_pred CEEEEeccCCcHHHHHHH----HcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC
Confidence 489999999999888764 56754 6789999997654332 2333444555555543
No 197
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=50.60 E-value=24 Score=34.03 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=33.3
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP 253 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~ 253 (521)
...++||+.||.|..+.-+. ..+. .+.++|+++.+++..+.|+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la----~~~~---~v~~vd~~~~~~~~a~~~~~ 121 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLA----HLVR---RVFSVERIKTLQWEAKRRLK 121 (212)
T ss_pred CCCEEEEECCCccHHHHHHH----HHhC---EEEEEeCCHHHHHHHHHHHH
Confidence 44689999999999887553 3322 47899999998887777653
No 198
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=50.47 E-value=27 Score=35.08 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=55.0
Q ss_pred eeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCC--ceeecchHHHHHHHHHHHHHhhhhhhhhh
Q 046469 210 LYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEA--QVRNEAAEDFLELVKEWQKLCKRFAVNIV 284 (521)
Q Consensus 210 LFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (521)
.-.|+||..+.+.+.|...|+++-.+.-..=++.|..-+++-||.. .++.-|+.+--++.+-.+|....|+-+++
T Consensus 10 vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~iDI 86 (261)
T KOG4169|consen 10 VTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGTIDI 86 (261)
T ss_pred EecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCceEE
Confidence 3468999999999899999987443322333477888888888864 45567776666777778889999987765
No 199
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=50.33 E-value=17 Score=34.08 Aligned_cols=50 Identities=18% Similarity=0.032 Sum_probs=34.4
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecch
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAA 262 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~ 262 (521)
...++|||.|+.||++.-+. ..+.....++|+|+.+. ...+....++.|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~----~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~ 72 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLL----QRGGPAGRVVAVDLGPM------DPLQNVSFIQGDI 72 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHH----TSTTTEEEEEEEESSST------GS-TTEEBTTGGG
T ss_pred cccEEEEcCCcccceeeeee----ecccccceEEEEecccc------ccccceeeeeccc
Confidence 56899999999999988765 45522347899999987 2335555555554
No 200
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=49.96 E-value=34 Score=34.24 Aligned_cols=57 Identities=19% Similarity=0.061 Sum_probs=36.8
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC-----CCCceeecchHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH-----PEAQVRNEAAED 264 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~-----~~~~~~~~~~~~ 264 (521)
.-+|||+-||.|....-+ ++..|.+. .+.++|+++..++..+.|. +...++..|+++
T Consensus 78 g~~VLDiG~G~G~~~~~~---a~~~g~~~-~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~ 139 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLA---ARRVGPTG-KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA 139 (272)
T ss_pred CCEEEEeCCCCCHHHHHH---HHHhCCCC-EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhh
Confidence 349999999987665533 22334322 4789999999888877652 344455555543
No 201
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=48.60 E-value=32 Score=30.51 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=33.9
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
+++|+-||.|-.+..+. ..+-+ ..++++|.++.+.+.++.|.
T Consensus 1 ~vlDiGa~~G~~~~~~~----~~~~~-~~v~~~E~~~~~~~~l~~~~ 42 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA----RKGAE-GRVIAFEPLPDAYEILEENV 42 (143)
T ss_pred CEEEccCCccHHHHHHH----HhCCC-CEEEEEecCHHHHHHHHHHH
Confidence 58999999999988775 44433 26899999999999888874
No 202
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=48.34 E-value=29 Score=35.30 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=44.7
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC---CCCceeecchHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH---PEAQVRNEAAEDF 265 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~---~~~~~~~~~~~~~ 265 (521)
.=+||++=.|.|.++.-|- +.+- .+.|+|+|+.-+..++..+ ++..++++|+-.+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll----~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~ 88 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLL----ERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKF 88 (259)
T ss_pred CCeEEEECCCCCHHHHHHH----hhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcC
Confidence 4589999999999999885 4544 4679999999999999885 4567888888644
No 203
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=47.14 E-value=27 Score=27.38 Aligned_cols=37 Identities=30% Similarity=0.553 Sum_probs=25.5
Q ss_pred eCCCEEEEec--CCCccEEEEEeEEeeCCCCeEEEEEEEE
Q 046469 54 DLGDCAYIKG--EGTQKHIGKILEFFKTTDGEEYFRVQWF 91 (521)
Q Consensus 54 ~vGD~VyV~~--~~~p~~IarI~~i~~~~~g~~~v~v~WF 91 (521)
++||.+.+.. -+.+...|.|.++-. .+|..=+.|+|-
T Consensus 4 ~vGD~lvv~g~~vg~~~r~GeIveV~g-~dG~PPY~VRw~ 42 (58)
T PF08940_consen 4 SVGDRLVVHGRTVGQPDRHGEIVEVRG-PDGSPPYLVRWD 42 (58)
T ss_dssp -TTEEEEES-TTTS--EEEEEEEE-S--SSS-S-EEEEET
T ss_pred CCCCEEEEcCCcCCCCCcEeEEEEEEC-CCCCCCEEEEec
Confidence 6899999998 688999999999876 588888889984
No 204
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=46.47 E-value=30 Score=28.92 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=32.1
Q ss_pred EeCCCEEEEecCCCccEEEEEeEEeeCCCCeEEEEEEEEeec
Q 046469 53 FDLGDCAYIKGEGTQKHIGKILEFFKTTDGEEYFRVQWFYRA 94 (521)
Q Consensus 53 Y~vGD~VyV~~~~~p~~IarI~~i~~~~~g~~~v~v~WFyRp 94 (521)
|.+||.|.-+-.+-|+|-|+|..+-. +...++|.||-=.
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~---~~~k~~V~FfG~~ 39 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISR---KKQKARVNFIGDN 39 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecC---CCCEEEEEEeCCC
Confidence 57899999998999999999998854 3667888888654
No 205
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=45.25 E-value=38 Score=35.52 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=36.2
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc-----CCCCceeecchH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN-----HPEAQVRNEAAE 263 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N-----~~~~~~~~~~~~ 263 (521)
.-+|||+.||.|.++.-+. +..|-+ -.+.++|+++..++..+.| ..+..+++.|+.
T Consensus 81 g~~VLDIG~GtG~~a~~LA---~~~~~~-g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~ 141 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMS---RVVGEK-GLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY 141 (322)
T ss_pred CCEEEEEeCCccHHHHHHH---HhcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence 3589999999999988664 223321 1367999999876655543 223445566654
No 206
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=45.08 E-value=41 Score=40.29 Aligned_cols=58 Identities=29% Similarity=0.430 Sum_probs=44.8
Q ss_pred cceeEEEEEECCEEEeCCCEEEEec--CC--------C--------------ccEEEEEeEEeeCC-CCeEEEEEEEEee
Q 046469 39 VECHYAQARIGECIFDLGDCAYIKG--EG--------T--------------QKHIGKILEFFKTT-DGEEYFRVQWFYR 93 (521)
Q Consensus 39 ~r~~Y~~~~vdG~~Y~vGD~VyV~~--~~--------~--------------p~~IarI~~i~~~~-~g~~~v~v~WFyR 93 (521)
....|+++.++++.|..||.|+|.- ++ . ...=|+|..|++.. +..+.+.++-||-
T Consensus 439 ~g~iye~~~in~~~ys~g~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~kg~is~fy~~~~~~~~~~e~c~y~d 518 (1164)
T PTZ00112 439 DGVIYESIQINDVEYSIGDDVLIFCTGNGNTYNGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYD 518 (1164)
T ss_pred CceEEEEEEEcceeeccCCcEEEEEcCCCCccccccCccccccccchhhhhheecccccchhhhcCCCceeeEEEEEEEc
Confidence 3456999999999999999999886 11 0 23468999999765 4568899999997
Q ss_pred ccc
Q 046469 94 AED 96 (521)
Q Consensus 94 ped 96 (521)
-.|
T Consensus 519 ~~d 521 (1164)
T PTZ00112 519 QHD 521 (1164)
T ss_pred ccc
Confidence 665
No 207
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=44.99 E-value=23 Score=36.15 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=34.4
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
+++||.=||.|-+|.=|- +.|. .+.|+|..+.++++++.+
T Consensus 91 ~~ilDvGCGgGLLSepLA----rlga---~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLA----RLGA---QVTGIDASDDMVEVANEH 130 (282)
T ss_pred ceEEEeccCccccchhhH----hhCC---eeEeecccHHHHHHHHHh
Confidence 569999999999998764 8886 456999999999999986
No 208
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=44.93 E-value=27 Score=38.10 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=30.3
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLK 249 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~ 249 (521)
-++||+.||.|.++..|. ..+. .+.++|+++.+++.-+
T Consensus 39 ~~vLDlGcG~G~~~~~la----~~~~---~v~giD~s~~~l~~a~ 76 (475)
T PLN02336 39 KSVLELGAGIGRFTGELA----KKAG---QVIALDFIESVIKKNE 76 (475)
T ss_pred CEEEEeCCCcCHHHHHHH----hhCC---EEEEEeCCHHHHHHHH
Confidence 389999999999999875 3332 5689999999887544
No 209
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=44.85 E-value=88 Score=28.68 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=39.5
Q ss_pred eeEEEEEECCEEEeCCCEEEEec------------CCCccEEEEEeEEeeCCCC-------eEEEEEEEEe
Q 046469 41 CHYAQARIGECIFDLGDCAYIKG------------EGTQKHIGKILEFFKTTDG-------EEYFRVQWFY 92 (521)
Q Consensus 41 ~~Y~~~~vdG~~Y~vGD~VyV~~------------~~~p~~IarI~~i~~~~~g-------~~~v~v~WFy 92 (521)
.||..+-++.+.+.+||.|-|++ .++-.-|..|.+|...... .++|++.=|-
T Consensus 1 i~y~GiflGAE~I~vGD~VRl~~~~~~~~~~~~~~~~~~tdvMvI~~I~~~~~~~~~~~~~~v~~~G~lY~ 71 (139)
T PF10383_consen 1 IYYRGIFLGAEMIWVGDAVRLKPLNASPSPNQSDGNPDVTDVMVIDEIQLRLINCDPDSPSTVRFRGDLYT 71 (139)
T ss_pred CeECeEEEeeEEEEeCCEEEECccCCCcccccccCCCCceeEEEEeEEEEecccCCCCCCceEEEEeEece
Confidence 38999999999999999999965 1234578888888765433 5778777654
No 210
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=44.36 E-value=26 Score=29.44 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=31.8
Q ss_pred EeCCCEEEEecCCCccEEEEEeEEeeCC---CCeEEEEEEEEe
Q 046469 53 FDLGDCAYIKGEGTQKHIGKILEFFKTT---DGEEYFRVQWFY 92 (521)
Q Consensus 53 Y~vGD~VyV~~~~~p~~IarI~~i~~~~---~g~~~v~v~WFy 92 (521)
|.+||-|..+-.+-|.|=|+|....... ....++.|+||-
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFG 43 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFG 43 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccccCCCCeEEEEEeC
Confidence 5789999999999999999999976542 123568888886
No 211
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=41.24 E-value=55 Score=32.12 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=39.5
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC------CCceeecchHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP------EAQVRNEAAEDF 265 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~------~~~~~~~~~~~~ 265 (521)
...++||+=||.|..+..+-.-+...+. .+.++|+++.+++.-+.+.. ...+++.|+.++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~---~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV 118 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC
Confidence 3458999999999988766411111233 46799999999888776532 234566666643
No 212
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=41.20 E-value=19 Score=38.16 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=32.1
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
.++|=|||.||+-.-.. .-|.+ +.++|+|...++=-+.|.
T Consensus 200 ~vlDPFcGTGgiLiEag----l~G~~---viG~Did~~mv~gak~Nl 239 (347)
T COG1041 200 LVLDPFCGTGGILIEAG----LMGAR---VIGSDIDERMVRGAKINL 239 (347)
T ss_pred EeecCcCCccHHHHhhh----hcCce---EeecchHHHHHhhhhhhh
Confidence 89999999999865322 45664 467899999999988886
No 213
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=40.44 E-value=61 Score=34.85 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=45.1
Q ss_pred eeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHH
Q 046469 210 LYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLE 267 (521)
Q Consensus 210 LFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~ 267 (521)
+.+|+|-+...+-..+...|.+ +..+|.++..++.++..+++..++..|+.+...
T Consensus 235 iIiG~G~~g~~l~~~L~~~~~~---v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~ 289 (453)
T PRK09496 235 MIVGGGNIGYYLAKLLEKEGYS---VKLIERDPERAEELAEELPNTLVLHGDGTDQEL 289 (453)
T ss_pred EEECCCHHHHHHHHHHHhCCCe---EEEEECCHHHHHHHHHHCCCCeEEECCCCCHHH
Confidence 6789999988887777777875 478999999999999888888888888865543
No 214
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=40.34 E-value=77 Score=30.88 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=42.5
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLEL 268 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~~ 268 (521)
-+||||=||-|-+=.-|.+ .-+. ..+++|+|+..+..-.++ +..++..|+++-|..
T Consensus 15 srVLDLGCGdG~LL~~L~~---~k~v---~g~GvEid~~~v~~cv~r--Gv~Viq~Dld~gL~~ 70 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKD---EKQV---DGYGVEIDPDNVAACVAR--GVSVIQGDLDEGLAD 70 (193)
T ss_pred CEEEecCCCchHHHHHHHH---hcCC---eEEEEecCHHHHHHHHHc--CCCEEECCHHHhHhh
Confidence 4899999998887555541 2343 468999999987777776 567999999987753
No 215
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=40.11 E-value=51 Score=35.55 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=41.3
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHH-----cCCCCceeecchHHHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKL-----NHPEAQVRNEAAEDFLEL 268 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~-----N~~~~~~~~~~~~~~~~~ 268 (521)
..+||+-||.|...+.+- .+..+. .+.|+|+++.++..... +-++..+++.|+.++++.
T Consensus 124 p~vLEIGcGsG~~ll~lA--~~~P~~---~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~ 187 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQA--KNNPNK---LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL 187 (390)
T ss_pred CeEEEEcCcccHHHHHHH--HhCCCC---CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh
Confidence 489999999999988764 122233 56799999877544432 245667889999877643
No 216
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=39.51 E-value=50 Score=33.07 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=47.4
Q ss_pred CCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHH
Q 046469 202 KAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDF 265 (521)
Q Consensus 202 ~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~ 265 (521)
...-+|.||=||.|-.+.=|. ++=. ..++.++|.++..++.-+..-|++.....|+.++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~---~RwP--~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w 87 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLA---RRWP--DAVITGIDSSPAMLAKAAQRLPDATFEEADLRTW 87 (257)
T ss_pred cccceeeecCCCCCHHHHHHH---HhCC--CCeEeeccCCHHHHHHHHHhCCCCceecccHhhc
Confidence 356689999999998877664 2333 3378899999999999999999999888887754
No 217
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=38.05 E-value=32 Score=33.67 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=40.4
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc--CC---CCceeecchHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN--HP---EAQVRNEAAEDF 265 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N--~~---~~~~~~~~~~~~ 265 (521)
=++.||=+|.|-+|.=. ++ + .+-+.|+|.||.-.+....| -| ++.++++||.++
T Consensus 34 d~~~DLGaGsGiLs~~A---a~-~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVA---AH-A---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHH---Hh-h---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 36789999999988732 22 2 44789999999999999988 33 567788887654
No 218
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=36.86 E-value=53 Score=30.68 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=26.9
Q ss_pred ChhhhhhhHHHHHHHHHHHHhhhcCCCCCCcccccccCcceeEEEEEECCEEEeC
Q 046469 1 WSLWLLLPHFYYFLGLFFFLNFLHGAYSDDDEDKIVSNVECHYAQARIGECIFDL 55 (521)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~~Y~~~~vdG~~Y~v 55 (521)
||+|++...|+-|+|.|+|. +.+-+.=+|= ...=-.+++||+.|..
T Consensus 62 ~s~~~ftv~fv~m~~~llfD--I~P~YrfEDI-------dvLDLRVCYNGEWy~t 107 (155)
T PF10777_consen 62 GSVWGFTVFFVVMAAFLLFD--IKPRYRFEDI-------DVLDLRVCYNGEWYNT 107 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ccceeeeccc-------CeeEEeEEEcceeeee
Confidence 46777777788777777663 1122211111 1222378999999874
No 219
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=36.86 E-value=50 Score=33.82 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=43.2
Q ss_pred ccEEeeeccCChhhHHHHHhhhh-cCCcceEEEEEcCCHHHHHHHHHcC---C---C--CceeecchHHHH
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKL-SCTNLVTRWALDSDKSACESLKLNH---P---E--AQVRNEAAEDFL 266 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~-aG~~~~~~~avd~d~~a~~t~~~N~---~---~--~~~~~~~~~~~~ 266 (521)
+++||+.+|.|=++.++-.-+.. -|..=..+..+||+++-+.+-+..- | . ...++.|||++-
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 89999999999999998632221 0111135678999999888877654 2 2 456677888653
No 220
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=36.11 E-value=60 Score=35.41 Aligned_cols=44 Identities=14% Similarity=0.007 Sum_probs=33.7
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
...+|||+-||.|+.+..+. ...|. .+.++|+++.+++.-+.|.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la---~~~~~---~v~gvDiS~~~l~~A~~~~ 309 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA---ENFDV---HVVGIDLSVNMISFALERA 309 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH---HhcCC---EEEEEECCHHHHHHHHHHh
Confidence 34589999999999887664 12343 4789999999998877764
No 221
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=35.25 E-value=72 Score=34.18 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=33.9
Q ss_pred ccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCC
Q 046469 205 LALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPE 254 (521)
Q Consensus 205 l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~ 254 (521)
-++||+-||.|++..-+. +..|. .+.++|+++.+++.-+.+..+
T Consensus 169 ~rVLDIGcG~G~~a~~la---~~~g~---~V~giDlS~~~l~~A~~~~~~ 212 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAA---EHYGV---SVVGVTISAEQQKLAQERCAG 212 (383)
T ss_pred CEEEEeCCCccHHHHHHH---HHCCC---EEEEEeCCHHHHHHHHHHhcc
Confidence 489999999999887553 23354 467999999999888877643
No 222
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=35.03 E-value=85 Score=30.26 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=42.6
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHH-----HHHHHcCCCCceeecchHHHHHHH
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSAC-----ESLKLNHPEAQVRNEAAEDFLELV 269 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~-----~t~~~N~~~~~~~~~~~~~~~~~~ 269 (521)
.+||+-||-|.+-+.+- ......+ ..++|+....+ ...+.+.++..+++.||..++..+
T Consensus 20 l~lEIG~G~G~~l~~~A--~~~Pd~n---~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~ 83 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELA--KRNPDIN---FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRL 83 (195)
T ss_dssp EEEEET-TTSHHHHHHH--HHSTTSE---EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHH
T ss_pred eEEEecCCCCHHHHHHH--HHCCCCC---EEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhc
Confidence 89999999999988763 3455654 56999997644 445567889999999999887543
No 223
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=34.93 E-value=51 Score=27.23 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=30.7
Q ss_pred EeCCCEEEEecCCCccEEEEEeEEeeCCC------CeEEEEEEEEe
Q 046469 53 FDLGDCAYIKGEGTQKHIGKILEFFKTTD------GEEYFRVQWFY 92 (521)
Q Consensus 53 Y~vGD~VyV~~~~~p~~IarI~~i~~~~~------g~~~v~v~WFy 92 (521)
|++||.|..+-.+-|.|=|+|........ ....+.|++|-
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg 46 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG 46 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeC
Confidence 57899999999899999999998765421 23466777775
No 224
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=34.52 E-value=1.4e+02 Score=24.37 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=34.1
Q ss_pred eccCChhhHHHHHhhhhcCCcc-eEEEEEcCCHHHHHHHHHcCC
Q 046469 211 YSGCGGMSTGLCLGAKLSCTNL-VTRWALDSDKSACESLKLNHP 253 (521)
Q Consensus 211 FsG~GG~s~Gl~~g~~~aG~~~-~~~~avd~d~~a~~t~~~N~~ 253 (521)
|-|+|.|..++-.++..+|+.- ++....+-++...+-++..++
T Consensus 4 iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~ 47 (96)
T PF03807_consen 4 IIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG 47 (96)
T ss_dssp EESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT
T ss_pred EECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc
Confidence 4599999999999999999322 244566999999999988887
No 225
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.43 E-value=1.2e+02 Score=25.66 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=41.0
Q ss_pred eeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHHH
Q 046469 210 LYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLEL 268 (521)
Q Consensus 210 LFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~~ 268 (521)
+.+|.|-++..+-+.+...|. .+..+|.|+..++..+... ..++..|+.+...|
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~---~vvvid~d~~~~~~~~~~~--~~~i~gd~~~~~~l 55 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGI---DVVVIDRDPERVEELREEG--VEVIYGDATDPEVL 55 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHTT--SEEEES-TTSHHHH
T ss_pred EEEcCCHHHHHHHHHHHhCCC---EEEEEECCcHHHHHHHhcc--cccccccchhhhHH
Confidence 568999998888877777553 4679999999999998776 66888888766543
No 226
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=34.34 E-value=1.2e+02 Score=33.88 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=42.1
Q ss_pred eeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHHHHHHHHH
Q 046469 209 DLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELVKEWQK 274 (521)
Q Consensus 209 dLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~~~~~~~~ 274 (521)
=|=||.|||+=+=-+++..+|. +...+|+|+.+++.-... .-...+..|.++.+++++++.+
T Consensus 160 ~lTaGLGGMgGAQplA~~m~g~---v~l~vEvd~~ri~kR~~~-g~ld~~~~~ldea~~~~~ea~~ 221 (546)
T PF01175_consen 160 FLTAGLGGMGGAQPLAATMAGG---VGLIVEVDPSRIEKRLEQ-GYLDEVTDDLDEALARAKEARA 221 (546)
T ss_dssp EEEE--STTCCHHHHHHHHTT----EEEEEES-HHHHHHHHHT-TSSSEEESSHHHHHHHHHHHHH
T ss_pred EEEecccccccchHHHHHhcCc---eEEEEEECHHHHHHHHhC-CCeeEEcCCHHHHHHHHHHhhc
Confidence 3568888886554445557776 668999999998864432 2356788999999999988665
No 227
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=33.09 E-value=1.8e+02 Score=24.66 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=40.3
Q ss_pred eeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHH
Q 046469 210 LYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLE 267 (521)
Q Consensus 210 LFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~ 267 (521)
.+-|+|.+....-..+...+-.+++++.+|.++...+.+...+.-. ...+.+++++
T Consensus 4 ~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll~ 59 (120)
T PF01408_consen 4 GIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP--VYTDLEELLA 59 (120)
T ss_dssp EEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE--EESSHHHHHH
T ss_pred EEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc--chhHHHHHHH
Confidence 3568888877766566666555678899999999888887666433 5666776663
No 228
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=32.75 E-value=67 Score=30.91 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=31.2
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP 253 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~ 253 (521)
+|||+-||.|++..-+- ...+ .. .+.++|+++..++.-+.+.+
T Consensus 2 ~vLDiGcG~G~~~~~la---~~~~-~~-~v~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA---ERHP-HL-QLHGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCHHHHHHH---HHCC-CC-EEEEEECCHHHHHHHHHHHH
Confidence 68999999999877653 1222 12 46799999998887777653
No 229
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=32.66 E-value=59 Score=25.39 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=29.2
Q ss_pred EeCCCEEEEecCCCccEEEEEeEEeeCC-------CCeEEEEEEEEe
Q 046469 53 FDLGDCAYIKGEGTQKHIGKILEFFKTT-------DGEEYFRVQWFY 92 (521)
Q Consensus 53 Y~vGD~VyV~~~~~p~~IarI~~i~~~~-------~g~~~v~v~WFy 92 (521)
|++||.|..+-.+-|.|=|+|..-.... .....+.|++|-
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg 47 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFG 47 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeC
Confidence 6789999999999999999998865432 123455565553
No 230
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=32.50 E-value=1.1e+02 Score=32.03 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=43.3
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc---CC-CCceeecchHHHHHHHH
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN---HP-EAQVRNEAAEDFLELVK 270 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N---~~-~~~~~~~~~~~~~~~~~ 270 (521)
.++|.=.|.||=|..+-. ..+ + -.++|+|.|+.|++..+.+ |. ...+++.+-.++.+.++
T Consensus 23 iyVD~TlG~GGHS~~iL~---~l~-~-g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 23 IYIDCTLGFGGHSKAILE---QLG-T-GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred EEEEeCCCChHHHHHHHH---hCC-C-CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 699999999999998853 222 1 2588999999999887654 32 35566777777765553
No 231
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=32.43 E-value=1.2e+02 Score=30.25 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=41.5
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC---------CCceeecchHHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP---------EAQVRNEAAEDFLE 267 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~---------~~~~~~~~~~~~~~ 267 (521)
.+-+||=|=.|.||...-+. +..+ ++.+.+||+|+..++..+..+| ...++.+|+..|++
T Consensus 76 ~p~~VLiiGgG~G~~~~ell---~~~~--~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~ 144 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELL---KHPP--VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK 144 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHT---TSTT---SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH
T ss_pred CcCceEEEcCCChhhhhhhh---hcCC--cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH
Confidence 34477777777777766553 2222 3478899999999999887655 45789999999884
No 232
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.43 E-value=1.2e+02 Score=29.60 Aligned_cols=58 Identities=21% Similarity=0.043 Sum_probs=40.3
Q ss_pred cccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHH----HHHcCCCCceeecchHHH
Q 046469 204 ELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACES----LKLNHPEAQVRNEAAEDF 265 (521)
Q Consensus 204 ~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t----~~~N~~~~~~~~~~~~~~ 265 (521)
..-++++=||.|..+.-|.+.+. + ..+..|.|+++.|+++ .+.|--...+++.|..+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~--~--~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~ 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG--P--QALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC--C--CceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh
Confidence 55789999999999998863322 3 3478999999999887 334544445555554433
No 233
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=32.42 E-value=44 Score=36.38 Aligned_cols=62 Identities=26% Similarity=0.280 Sum_probs=47.4
Q ss_pred CCCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCC-----CCceeecchHHHH
Q 046469 201 HKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHP-----EAQVRNEAAEDFL 266 (521)
Q Consensus 201 ~~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~-----~~~~~~~~~~~~~ 266 (521)
.+..-++||+||-.||-++-+-.=++..| +++|.|.+..-+.....|.+ ++++.+.|..+|-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTG----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCc----eEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence 45567999999999999876643333445 78999999999988888854 6778888887653
No 234
>PRK05414 urocanate hydratase; Provisional
Probab=31.70 E-value=1e+02 Score=34.32 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=46.8
Q ss_pred EeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHHHHHHHHHH
Q 046469 208 LDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELVKEWQKL 275 (521)
Q Consensus 208 ldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~~~~~~~~~ 275 (521)
+=|=+|.|||+=+=-+++..+|. +..++|+|+.+++.-. ...-...+..|.++.+++++++++-
T Consensus 169 ~~lTaGLGGMgGAQPlA~~mag~---v~i~vEvd~~ri~kR~-~~gyld~~~~~Ldeal~~~~~a~~~ 232 (556)
T PRK05414 169 LVLTAGLGGMGGAQPLAATMAGA---VCLAVEVDESRIDKRL-RTGYLDEKADDLDEALALAEEAKAA 232 (556)
T ss_pred EEEEecCCccccccHHHHHhcCc---eEEEEEECHHHHHHHH-hCCcceeEcCCHHHHHHHHHHHHHc
Confidence 34568889886554445557776 6689999999987643 3444667889999999998886653
No 235
>PTZ00357 methyltransferase; Provisional
Probab=30.94 E-value=1.1e+02 Score=35.65 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=42.2
Q ss_pred CCcccEEeeeccCChh-hHHHHHhhhhcCCcceEEEEEcCCHHHH-HHHHH--cCCCC-----------ceeecchHHH
Q 046469 202 KAELALLDLYSGCGGM-STGLCLGAKLSCTNLVTRWALDSDKSAC-ESLKL--NHPEA-----------QVRNEAAEDF 265 (521)
Q Consensus 202 ~~~l~vldLFsG~GG~-s~Gl~~g~~~aG~~~~~~~avd~d~~a~-~t~~~--N~~~~-----------~~~~~~~~~~ 265 (521)
.+.+.|+=+=+|-|.+ +..|. +++.+|+++ .+||+|.++.|+ -++.. |.+.+ .+++.|...+
T Consensus 699 ~~~vVImVVGAGRGPLVdraLr-Aak~~gvkV-rIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 699 ERTLHLVLLGCGRGPLIDECLH-AVSALGVRL-RIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred CceEEEEEEcCCccHHHHHHHH-HHHHcCCcE-EEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccc
Confidence 3446677777777877 66664 888999986 489999996654 34433 44544 5677777654
No 236
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=30.57 E-value=53 Score=26.70 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=29.1
Q ss_pred EeCCCEEEEecCCCccEEEEEeEEeeC---CCCeEEEEEEEEe
Q 046469 53 FDLGDCAYIKGEGTQKHIGKILEFFKT---TDGEEYFRVQWFY 92 (521)
Q Consensus 53 Y~vGD~VyV~~~~~p~~IarI~~i~~~---~~g~~~v~v~WFy 92 (521)
|++||.|..+-.+-|.|=|+|...... ......+.|.||-
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg 43 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFG 43 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETT
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecC
Confidence 689999999999999999999887532 1234455666664
No 237
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=30.34 E-value=1.3e+02 Score=31.94 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=39.1
Q ss_pred EEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecc
Q 046469 207 LLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEA 261 (521)
Q Consensus 207 vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~ 261 (521)
-+-.| |+||..+..-+||+.+|-. -+.|+|+++...+.-+. |.-+.+++..
T Consensus 188 tvaV~-GlGgVGlaaI~gA~~agA~--~IiAvD~~~~Kl~~A~~-fGAT~~vn~~ 238 (366)
T COG1062 188 TVAVF-GLGGVGLAAIQGAKAAGAG--RIIAVDINPEKLELAKK-FGATHFVNPK 238 (366)
T ss_pred eEEEE-eccHhHHHHHHHHHHcCCc--eEEEEeCCHHHHHHHHh-cCCceeecch
Confidence 34444 8899988888999999976 88999999998776554 6666666654
No 238
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=30.34 E-value=1.3e+02 Score=33.47 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=47.9
Q ss_pred EeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHHHHHHHHHHhh
Q 046469 208 LDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELVKEWQKLCK 277 (521)
Q Consensus 208 ldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (521)
+=|=+|.|||+=+=-+++..+|. +..++|+|+.+++.-.. ..-...+..|.++.+++++++++-.+
T Consensus 160 ~~lTaGLGGMgGAQPlA~~mag~---v~i~vEvd~~ri~kR~~-~gyld~~~~~ldeal~~~~~a~~~~~ 225 (545)
T TIGR01228 160 WVLTAGLGGMGGAQPLAVTMNGG---VSIAVEVDESRIDKRLE-TKYCDEQTDSLDEALARAEEAKAEGK 225 (545)
T ss_pred EEEEeCCCccccccHHHHHHcCc---eEEEEEECHHHHHHHHh-cCcceeEcCCHHHHHHHHHHHHHcCC
Confidence 44668999987554445557776 66899999999876433 33466788999999999988766433
No 239
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=30.28 E-value=1.2e+02 Score=27.30 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=39.5
Q ss_pred eeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHH
Q 046469 210 LYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFL 266 (521)
Q Consensus 210 LFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~ 266 (521)
|.-|+||++.+....+...|.+ .+.-++-+..-++.....+++..+...+.+++.
T Consensus 16 lviGaGg~ar~v~~~L~~~g~~--~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~ 70 (135)
T PF01488_consen 16 LVIGAGGAARAVAAALAALGAK--EITIVNRTPERAEALAEEFGGVNIEAIPLEDLE 70 (135)
T ss_dssp EEESSSHHHHHHHHHHHHTTSS--EEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC
T ss_pred EEECCHHHHHHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHcCccccceeeHHHHH
Confidence 3459999999998888899987 566777887777777766665545444555544
No 240
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=30.02 E-value=1.2e+02 Score=27.35 Aligned_cols=51 Identities=29% Similarity=0.262 Sum_probs=34.1
Q ss_pred CCCCcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 200 PHKAELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 200 ~~~~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
...+..+++|+.||-|=++..|..-+.....+. .+.++|.++...+.....
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~-~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNL-RVLGIDCNESLVESAQKR 72 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCC-eEEEEECCcHHHHHHHHH
Confidence 345778999999999999888752111113322 467999998865554443
No 241
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.21 E-value=1.4e+02 Score=29.77 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=43.7
Q ss_pred eeccCC---hhhHHHHHhhhhcCCcceEEEEEcCC---HHHHHHHHHcCCCCceeecchHHHHHHHHHHHHHhhhhhh
Q 046469 210 LYSGCG---GMSTGLCLGAKLSCTNLVTRWALDSD---KSACESLKLNHPEAQVRNEAAEDFLELVKEWQKLCKRFAV 281 (521)
Q Consensus 210 LFsG~G---G~s~Gl~~g~~~aG~~~~~~~avd~d---~~a~~t~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (521)
|-.|+| |+..++...+.++|.++ + .++.+ +.+++......+....+.-|+.+..++-+-.++++++|+-
T Consensus 10 lITGas~~~GIG~aia~~la~~G~~v--i-l~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 84 (262)
T PRK07984 10 LVTGVASKLSIAYGIAQAMHREGAEL--A-FTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK 84 (262)
T ss_pred EEeCCCCCccHHHHHHHHHHHCCCEE--E-EEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence 445553 67777777778899873 2 23333 3455666655666666777887776666666677777653
No 242
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=28.94 E-value=81 Score=32.59 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=40.0
Q ss_pred CcccEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc-----CC-CCceeecchHHHH
Q 046469 203 AELALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN-----HP-EAQVRNEAAEDFL 266 (521)
Q Consensus 203 ~~l~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N-----~~-~~~~~~~~~~~~~ 266 (521)
.-.++||+=||.|+++.= .|+.-|.+ +.++++++...+-.+.. .. ...++..|-++|.
T Consensus 72 ~G~~lLDiGCGWG~l~~~---aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~ 135 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIY---AAEEYGVT---VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE 135 (283)
T ss_pred CCCEEEEeCCChhHHHHH---HHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc
Confidence 456999999999999873 34455664 56999999887777663 22 3445555555554
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=28.19 E-value=5.2e+02 Score=28.13 Aligned_cols=35 Identities=20% Similarity=0.030 Sum_probs=25.1
Q ss_pred ChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 215 GGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 215 GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
||=.+++.+=++..|+. -+--+|.||..++..++|
T Consensus 298 GGDGLAlRellkyP~~~--qI~lVdLDP~miela~~~ 332 (508)
T COG4262 298 GGDGLALRELLKYPQVE--QITLVDLDPRMIELASHA 332 (508)
T ss_pred CCchHHHHHHHhCCCcc--eEEEEecCHHHHHHhhhh
Confidence 44445555556677754 788999999999888755
No 244
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=28.06 E-value=1.9e+02 Score=21.96 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=25.0
Q ss_pred EeCCCEEEEecCCCccEEEEEeEEeeCCCCeEEEEEE
Q 046469 53 FDLGDCAYIKGEGTQKHIGKILEFFKTTDGEEYFRVQ 89 (521)
Q Consensus 53 Y~vGD~VyV~~~~~p~~IarI~~i~~~~~g~~~v~v~ 89 (521)
+.+|+.|++.-.....|-|+|..+... .+...+.|.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~-~~~~~YyVH 36 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREK-NGEPEYYVH 36 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEEC-TTCEEEEEE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEec-CCCEEEEEE
Confidence 368999999874666899999999884 444433343
No 245
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=26.03 E-value=1.1e+02 Score=31.86 Aligned_cols=42 Identities=31% Similarity=0.252 Sum_probs=32.2
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcC
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
+|+||=||.|-++.-+- +...- . -+.-+|+|..|++.-+.|-
T Consensus 161 ~vlDlGCG~Gvlg~~la---~~~p~-~-~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 161 KVLDLGCGYGVLGLVLA---KKSPQ-A-KLTLVDVNARAVESARKNL 202 (300)
T ss_pred cEEEeCCCccHHHHHHH---HhCCC-C-eEEEEecCHHHHHHHHHhH
Confidence 99999999999887664 23332 2 4567999999998888773
No 246
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=25.92 E-value=1.1e+02 Score=30.80 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=33.0
Q ss_pred CcccEEeeeccCChh--hHHHHHhhhhcC-----CcceEEEEEcCCHHHHHHHHHcC
Q 046469 203 AELALLDLYSGCGGM--STGLCLGAKLSC-----TNLVTRWALDSDKSACESLKLNH 252 (521)
Q Consensus 203 ~~l~vldLFsG~GG~--s~Gl~~g~~~aG-----~~~~~~~avd~d~~a~~t~~~N~ 252 (521)
.+++|+|+=||.|-- |+++. +.+.+ .++ .+.|+|+++.+++.-+.+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~--l~e~~~~~~~~~~-~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAML--LAETLPKAREPDV-KILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHH--HHHHhhhcCCCCe-EEEEEECCHHHHHHHHcCC
Confidence 468999999999974 33332 12221 123 4789999999999988774
No 247
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=25.89 E-value=70 Score=27.29 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=29.2
Q ss_pred EeCCCEEEEecCCCccEEEEEeEEe---------eCCCCeEEEEEEEE
Q 046469 53 FDLGDCAYIKGEGTQKHIGKILEFF---------KTTDGEEYFRVQWF 91 (521)
Q Consensus 53 Y~vGD~VyV~~~~~p~~IarI~~i~---------~~~~g~~~v~v~WF 91 (521)
|++||.|..+-.+-|.|-|+|..=- ....+...+.|++|
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FF 48 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFF 48 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEe
Confidence 5789999999999999999998621 11233466778877
No 248
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=24.73 E-value=87 Score=31.67 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=29.5
Q ss_pred cEEeeeccCChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHc
Q 046469 206 ALLDLYSGCGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 206 ~vldLFsG~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N 251 (521)
+.++-|+|+|.+.+.+. . . ..+..|+|+.-+..|+.=
T Consensus 28 ~yvEPF~Gggsv~l~~~-----~--~--~~~lND~n~~Li~~~~~i 64 (266)
T TIGR00571 28 CLVEPFVGGGAVFFNLN-----P--K--RYLLNDINEDLINLYKAI 64 (266)
T ss_pred EEEEecCCcchhheeec-----C--c--EEEEecCCHHHHHHHHHH
Confidence 79999999998887552 2 2 367899999999999853
No 249
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=24.64 E-value=1.6e+02 Score=31.51 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=34.7
Q ss_pred CcceeecCCCCcCccc-cCC----------cCCCCCCCcccchhhHH--------HHHHHHhhcCCcEEEEecccchh
Q 046469 423 DVDVICGGPPCQGISG-YNR----------FRNVDSPLDDERNRQIV--------IFMDIVEFLKPKYVLMENVVDIL 481 (521)
Q Consensus 423 ~vDlL~ggpPCQ~fS~-an~----------~~~~~~~~~d~r~~L~~--------~~lrii~~~rP~~~l~ENV~gl~ 481 (521)
+|-+|.||||=++|-. ++- ..++.-+..|-.+. .. -++..++.+||++|++||+|-=+
T Consensus 43 ~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~-l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Gl 119 (400)
T COG4671 43 DILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGD-LEETKKLRSQLILSTAETFKPDIFIVDKFPFGL 119 (400)
T ss_pred eEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCC-HHHHHHHHHHHHHHHHHhcCCCEEEEeccccch
Confidence 4568899999999987 321 11111111222222 11 23456677899999999999543
No 250
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.43 E-value=1.9e+02 Score=23.93 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=21.4
Q ss_pred EeCCCEEEEecC-------CCccEEEEEeEEeeC
Q 046469 53 FDLGDCAYIKGE-------GTQKHIGKILEFFKT 79 (521)
Q Consensus 53 Y~vGD~VyV~~~-------~~p~~IarI~~i~~~ 79 (521)
.+.||+|.|..+ ++-.|+|+|...-..
T Consensus 6 Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~gg 39 (75)
T PF11302_consen 6 VKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGG 39 (75)
T ss_pred cCCCCEEEEecCccccccCCCCcEEEEEEEEecc
Confidence 578999999982 356899999887653
No 251
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=24.30 E-value=1.2e+02 Score=28.54 Aligned_cols=44 Identities=18% Similarity=0.057 Sum_probs=29.9
Q ss_pred CCCcccEEeeeccCChhhHHHHHhhhhc-CCcceEEEEEcCCHHHHHHHHHc
Q 046469 201 HKAELALLDLYSGCGGMSTGLCLGAKLS-CTNLVTRWALDSDKSACESLKLN 251 (521)
Q Consensus 201 ~~~~l~vldLFsG~GG~s~Gl~~g~~~a-G~~~~~~~avd~d~~a~~t~~~N 251 (521)
.....+||+|=||+|-.++.+. .. |.. .+.+-|.++ +++..+.|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a----~~~~~~--~Vv~TD~~~-~l~~l~~N 87 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAA----KLFGAA--RVVLTDYNE-VLELLRRN 87 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHH----HT-T-S--EEEEEE-S--HHHHHHHH
T ss_pred hcCCceEEEECCccchhHHHHH----hccCCc--eEEEeccch-hhHHHHHH
Confidence 3455699999999997777654 33 433 678899998 88888777
No 252
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=23.70 E-value=1.1e+02 Score=35.44 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=16.2
Q ss_pred EEEEEcCCHHHHHHHHHc
Q 046469 234 TRWALDSDKSACESLKLN 251 (521)
Q Consensus 234 ~~~avd~d~~a~~t~~~N 251 (521)
.++++|+|+.|++.-+.|
T Consensus 258 ~i~G~Did~~av~~A~~N 275 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKN 275 (702)
T ss_pred eEEEEECCHHHHHHHHHH
Confidence 478999999999988887
No 253
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=23.31 E-value=5.1e+02 Score=24.18 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=28.6
Q ss_pred CCCcccccccCcceeEEEEEECCEEEeCCCEEEEecCC-CccEEEEEeEEee
Q 046469 28 SDDDEDKIVSNVECHYAQARIGECIFDLGDCAYIKGEG-TQKHIGKILEFFK 78 (521)
Q Consensus 28 ~~~~~~~i~~~~r~~Y~~~~vdG~~Y~vGD~VyV~~~~-~p~~IarI~~i~~ 78 (521)
+++=++.+........+.. +...++.||.|-++.++ ..+++-||..+..
T Consensus 38 g~SM~Ptl~~GD~vlv~~~--~~~~~~~GDIVvf~~~~~~~~iihRVi~v~~ 87 (158)
T TIGR02228 38 SGSMEPTFNTGDLILVTGA--DPNDIQVGDVITYKSPGFNTPVTHRVIEINN 87 (158)
T ss_pred CCCCcCCccCCCEEEEEec--ccCCCCCCCEEEEEECCCCccEEEEEEEEEC
Confidence 4444454433333334432 22467889988777633 3678889988754
No 254
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=22.00 E-value=1e+02 Score=26.09 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=22.3
Q ss_pred EEEEecccchhccCcchHHHHHHHHHhcCCCeEEEE
Q 046469 471 YVLMENVVDILKFDKASLGRYALSRLVHMKYQARFG 506 (521)
Q Consensus 471 ~~l~ENV~gl~~~~~~~~~~~il~~l~~lGY~v~~~ 506 (521)
-+++||.||.++ .+...|.+.||++.--
T Consensus 6 svlVeN~~GVL~--------Rit~lFsRRg~NI~SL 33 (84)
T PRK13562 6 KLQVADQVSTLN--------RITSAFVRLQYNIDTL 33 (84)
T ss_pred EEEEECCCCHHH--------HHHHHHhccCcCeeeE
Confidence 468999999865 4678889999998654
No 255
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.93 E-value=2.2e+02 Score=28.05 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=42.6
Q ss_pred CChhhHHHHHhhhhcCCcceEEEEEcCCHHHHHHHHHcCCCCceeecchHHHHHHHHHHHHHhhhhhhh
Q 046469 214 CGGMSTGLCLGAKLSCTNLVTRWALDSDKSACESLKLNHPEAQVRNEAAEDFLELVKEWQKLCKRFAVN 282 (521)
Q Consensus 214 ~GG~s~Gl~~g~~~aG~~~~~~~avd~d~~a~~t~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (521)
.+|+..++...+.+.|.++....-.+.+....+.....++....+..|+.+.-++.+.++++.++|+-+
T Consensus 17 ~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 85 (261)
T PRK08690 17 ERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDGL 85 (261)
T ss_pred CCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 457888887778889987432111233344444444444555567778877777777777777776533
No 256
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=20.73 E-value=1.7e+02 Score=19.56 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=20.5
Q ss_pred CCCEEEEecCCCccEEEEEeEEeeC
Q 046469 55 LGDCAYIKGEGTQKHIGKILEFFKT 79 (521)
Q Consensus 55 vGD~VyV~~~~~p~~IarI~~i~~~ 79 (521)
+||.|.|..-+..-.+|+|.++...
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~~ 25 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDRS 25 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEETT
T ss_pred CCCEEEEeEcCCCCceEEEEEEECC
Confidence 5899999985555689999999865
No 257
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.41 E-value=2.2e+02 Score=28.06 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=41.6
Q ss_pred CChhhHHHHHhhhhcCCcceEEEE--EcCCHHHHHHHHHcCCCCceeecchHHHHHHHHHHHHHhhhhhhh
Q 046469 214 CGGMSTGLCLGAKLSCTNLVTRWA--LDSDKSACESLKLNHPEAQVRNEAAEDFLELVKEWQKLCKRFAVN 282 (521)
Q Consensus 214 ~GG~s~Gl~~g~~~aG~~~~~~~a--vd~d~~a~~t~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (521)
.+|+..++...+.+.|.++ +.. .+-++..++......+....+.-|+.+..++-+..+++.++|+-+
T Consensus 17 ~~GIG~a~a~~l~~~G~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 85 (260)
T PRK06997 17 NRSIAYGIAKACKREGAEL--AFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDGL 85 (260)
T ss_pred CCcHHHHHHHHHHHCCCeE--EEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCCC
Confidence 4577777666677899873 332 133455555555555554456678877777666667776666533
Done!