Query 046470
Match_columns 888
No_of_seqs 649 out of 4131
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5E-100 1E-104 889.9 46.8 831 13-876 8-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.5E-63 9.7E-68 613.3 48.1 629 155-844 184-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.2E-45 1.6E-49 387.7 18.2 277 160-437 1-286 (287)
4 KOG0444 Cytoskeletal regulator 99.9 4.1E-24 8.8E-29 225.8 -4.3 328 483-842 35-379 (1255)
5 PLN00113 leucine-rich repeat r 99.9 1.1E-21 2.5E-26 244.8 14.9 316 500-842 116-445 (968)
6 KOG4194 Membrane glycoprotein 99.8 2.3E-22 4.9E-27 211.8 2.8 313 492-844 114-434 (873)
7 PLN00113 leucine-rich repeat r 99.8 7.9E-21 1.7E-25 237.2 15.6 314 498-844 160-494 (968)
8 KOG0444 Cytoskeletal regulator 99.8 5E-23 1.1E-27 217.7 -6.0 289 496-828 97-389 (1255)
9 KOG4194 Membrane glycoprotein 99.8 2.7E-22 5.8E-27 211.2 -2.0 296 497-833 144-447 (873)
10 PLN03210 Resistant to P. syrin 99.8 3.5E-19 7.5E-24 222.2 17.1 340 465-847 489-891 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 3.1E-20 6.7E-25 187.6 -0.6 313 494-836 198-539 (565)
12 KOG0618 Serine/threonine phosp 99.6 6.2E-18 1.4E-22 188.4 -7.3 210 594-837 241-488 (1081)
13 KOG0472 Leucine-rich repeat pr 99.6 3.7E-18 8.1E-23 172.7 -9.0 260 524-836 45-308 (565)
14 PRK15387 E3 ubiquitin-protein 99.6 2.5E-15 5.3E-20 173.8 12.6 254 482-812 203-456 (788)
15 KOG0617 Ras suppressor protein 99.5 4.1E-16 8.9E-21 139.8 -3.5 161 493-673 24-187 (264)
16 KOG0617 Ras suppressor protein 99.5 8.7E-16 1.9E-20 137.8 -3.5 167 514-726 23-190 (264)
17 PRK15370 E3 ubiquitin-protein 99.5 4.7E-14 1E-18 164.5 9.3 248 503-812 179-426 (754)
18 KOG0618 Serine/threonine phosp 99.5 8.3E-15 1.8E-19 163.8 2.7 282 503-845 46-329 (1081)
19 PRK15387 E3 ubiquitin-protein 99.5 1.6E-13 3.5E-18 158.9 13.0 255 503-836 202-456 (788)
20 KOG4237 Extracellular matrix p 99.5 1.1E-15 2.5E-20 154.9 -5.5 281 503-812 68-357 (498)
21 PRK15370 E3 ubiquitin-protein 99.5 8.7E-14 1.9E-18 162.3 9.2 223 502-775 199-426 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.4 2.5E-13 5.3E-18 161.0 6.0 310 495-845 538-867 (889)
23 PRK04841 transcriptional regul 99.3 6E-11 1.3E-15 147.8 23.6 283 155-474 14-332 (903)
24 KOG4237 Extracellular matrix p 99.3 2.3E-14 5E-19 145.5 -6.9 271 525-836 68-357 (498)
25 PRK00411 cdc6 cell division co 99.2 1E-09 2.2E-14 122.5 24.3 285 154-454 29-357 (394)
26 TIGR03015 pepcterm_ATPase puta 99.2 1.2E-09 2.6E-14 115.1 22.0 174 177-357 42-242 (269)
27 cd00116 LRR_RI Leucine-rich re 99.2 5.1E-12 1.1E-16 137.1 2.2 63 544-606 19-93 (319)
28 PF14580 LRR_9: Leucine-rich r 99.2 2.9E-11 6.2E-16 115.0 5.5 138 512-666 7-147 (175)
29 TIGR00635 ruvB Holliday juncti 99.1 2.1E-09 4.5E-14 115.4 19.4 271 155-457 4-291 (305)
30 TIGR02928 orc1/cdc6 family rep 99.1 3.1E-08 6.8E-13 109.4 27.7 287 155-455 15-350 (365)
31 cd00116 LRR_RI Leucine-rich re 99.1 1.7E-11 3.7E-16 133.0 1.2 129 502-631 23-177 (319)
32 PRK00080 ruvB Holliday junctio 99.1 1.7E-09 3.7E-14 116.7 16.5 269 155-455 25-310 (328)
33 PF14580 LRR_9: Leucine-rich r 99.1 5.1E-11 1.1E-15 113.3 3.2 130 497-629 14-150 (175)
34 PF01637 Arch_ATPase: Archaeal 99.1 6.2E-10 1.4E-14 114.7 11.0 189 157-352 1-233 (234)
35 COG2909 MalT ATP-dependent tra 99.0 8.7E-09 1.9E-13 116.2 19.4 284 156-474 20-338 (894)
36 KOG0532 Leucine-rich repeat (L 98.9 1.4E-10 3E-15 123.7 -1.1 195 502-751 75-270 (722)
37 PF05729 NACHT: NACHT domain 98.9 9.9E-09 2.1E-13 99.4 11.5 134 179-321 1-163 (166)
38 COG3899 Predicted ATPase [Gene 98.9 5.5E-08 1.2E-12 116.5 18.1 301 157-472 2-384 (849)
39 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.5E-14 113.5 2.0 209 521-773 118-335 (505)
40 PRK06893 DNA replication initi 98.8 4.5E-08 9.7E-13 99.5 13.3 152 177-355 38-205 (229)
41 COG2256 MGS1 ATPase related to 98.8 3.8E-08 8.1E-13 102.1 11.9 149 176-348 46-207 (436)
42 TIGR03420 DnaA_homol_Hda DnaA 98.7 1E-07 2.2E-12 97.5 13.5 167 160-355 22-203 (226)
43 KOG1259 Nischarin, modulator o 98.7 8.7E-10 1.9E-14 108.4 -2.2 132 498-633 280-413 (490)
44 KOG3207 Beta-tubulin folding c 98.7 2.4E-09 5.3E-14 111.1 -0.4 157 499-673 118-285 (505)
45 KOG1259 Nischarin, modulator o 98.6 5.5E-09 1.2E-13 102.9 0.3 106 522-632 282-387 (490)
46 PRK13342 recombination factor 98.6 4.3E-07 9.3E-12 101.1 15.3 174 156-355 13-198 (413)
47 PTZ00112 origin recognition co 98.6 4.7E-06 1E-10 95.4 22.8 203 154-357 754-986 (1164)
48 PRK07003 DNA polymerase III su 98.6 1.8E-06 4E-11 98.2 19.6 191 155-355 16-223 (830)
49 COG4886 Leucine-rich repeat (L 98.6 1.2E-08 2.5E-13 114.2 2.1 104 523-629 115-219 (394)
50 PF13173 AAA_14: AAA domain 98.6 1.5E-07 3.3E-12 86.2 8.4 119 178-313 2-127 (128)
51 KOG0532 Leucine-rich repeat (L 98.6 6.8E-09 1.5E-13 111.2 -1.4 130 498-631 117-246 (722)
52 PRK12402 replication factor C 98.5 1.7E-06 3.6E-11 94.6 16.5 191 155-352 15-225 (337)
53 KOG4341 F-box protein containi 98.5 2.3E-09 5.1E-14 110.6 -5.5 291 524-844 138-445 (483)
54 TIGR02903 spore_lon_C ATP-depe 98.5 1.5E-05 3.2E-10 92.6 24.6 195 155-356 154-398 (615)
55 COG4886 Leucine-rich repeat (L 98.5 5.1E-08 1.1E-12 109.0 4.2 130 499-631 113-244 (394)
56 KOG4341 F-box protein containi 98.5 4.4E-09 9.5E-14 108.7 -4.6 296 503-834 139-461 (483)
57 KOG2028 ATPase related to the 98.5 8.1E-06 1.8E-10 83.2 18.6 121 176-321 160-294 (554)
58 PF13855 LRR_8: Leucine rich r 98.5 4.2E-08 9.1E-13 76.6 1.9 57 549-605 2-60 (61)
59 PRK14960 DNA polymerase III su 98.5 8.8E-06 1.9E-10 91.9 20.0 191 155-352 15-218 (702)
60 PRK08727 hypothetical protein; 98.5 1.9E-06 4.2E-11 87.8 13.7 164 158-350 23-201 (233)
61 PLN03150 hypothetical protein; 98.5 2E-07 4.3E-12 109.1 6.8 108 525-633 419-529 (623)
62 KOG1909 Ran GTPase-activating 98.4 1.2E-08 2.5E-13 103.4 -3.7 241 544-836 26-309 (382)
63 KOG0531 Protein phosphatase 1, 98.4 3E-08 6.4E-13 110.9 -1.3 213 522-773 70-286 (414)
64 PLN03025 replication factor C 98.4 2.4E-06 5.3E-11 91.8 13.5 170 155-348 13-195 (319)
65 PF00308 Bac_DnaA: Bacterial d 98.4 2.8E-06 6E-11 85.5 13.0 180 156-351 10-206 (219)
66 PRK05564 DNA polymerase III su 98.4 5.6E-06 1.2E-10 88.8 16.0 174 156-353 5-190 (313)
67 PRK14961 DNA polymerase III su 98.4 5.5E-06 1.2E-10 90.5 16.2 188 155-350 16-217 (363)
68 PRK14963 DNA polymerase III su 98.4 2.2E-06 4.7E-11 96.6 13.2 191 155-356 14-221 (504)
69 PF13855 LRR_8: Leucine rich r 98.4 2.4E-07 5.3E-12 72.2 3.8 58 525-582 2-60 (61)
70 PRK09087 hypothetical protein; 98.4 3.5E-06 7.7E-11 85.0 13.1 140 177-354 43-196 (226)
71 PRK04195 replication factor C 98.4 1.8E-05 4E-10 90.0 20.4 178 155-359 14-208 (482)
72 PRK12323 DNA polymerase III su 98.4 4.2E-06 9.1E-11 94.1 14.5 192 155-353 16-225 (700)
73 PRK05642 DNA replication initi 98.4 5.3E-06 1.1E-10 84.6 13.8 150 178-354 45-209 (234)
74 PRK06645 DNA polymerase III su 98.4 9E-06 2E-10 91.2 16.7 189 155-350 21-226 (507)
75 PRK08084 DNA replication initi 98.4 5.9E-06 1.3E-10 84.3 13.7 171 155-354 23-210 (235)
76 PF05496 RuvB_N: Holliday junc 98.4 1.7E-05 3.6E-10 77.4 15.7 174 155-356 24-224 (233)
77 PRK14949 DNA polymerase III su 98.3 6.2E-06 1.3E-10 96.0 15.1 189 155-353 16-220 (944)
78 PRK00440 rfc replication facto 98.3 1E-05 2.2E-10 87.6 15.9 173 155-350 17-200 (319)
79 cd00009 AAA The AAA+ (ATPases 98.3 2.7E-06 5.8E-11 80.3 10.0 122 158-292 1-130 (151)
80 KOG2120 SCF ubiquitin ligase, 98.3 2E-08 4.4E-13 99.1 -4.7 84 549-632 186-273 (419)
81 PRK14956 DNA polymerase III su 98.3 2.9E-06 6.4E-11 93.0 11.1 188 155-349 18-218 (484)
82 PRK08903 DnaA regulatory inact 98.3 7.6E-06 1.7E-10 83.5 13.7 168 158-357 22-203 (227)
83 PRK14962 DNA polymerase III su 98.3 9.9E-06 2.1E-10 90.6 15.5 194 155-357 14-223 (472)
84 KOG2120 SCF ubiquitin ligase, 98.3 1.2E-08 2.5E-13 100.7 -6.7 84 572-670 186-271 (419)
85 PRK13341 recombination factor 98.3 5.4E-06 1.2E-10 97.1 13.1 166 156-347 29-211 (725)
86 KOG1859 Leucine-rich repeat pr 98.3 5E-08 1.1E-12 107.3 -3.5 101 526-631 166-266 (1096)
87 PRK14087 dnaA chromosomal repl 98.3 1.2E-05 2.5E-10 90.0 14.5 188 156-355 117-321 (450)
88 PRK14957 DNA polymerase III su 98.3 1.6E-05 3.4E-10 89.9 15.2 184 155-356 16-224 (546)
89 COG1474 CDC6 Cdc6-related prot 98.2 6.6E-05 1.4E-09 81.1 19.3 196 155-353 17-238 (366)
90 PRK08691 DNA polymerase III su 98.2 1.5E-05 3.3E-10 90.9 14.8 187 155-352 16-219 (709)
91 PF14516 AAA_35: AAA-like doma 98.2 0.00028 6.1E-09 75.9 23.8 194 154-360 10-246 (331)
92 PRK14964 DNA polymerase III su 98.2 2E-05 4.3E-10 87.7 14.9 173 155-350 13-214 (491)
93 PRK14088 dnaA chromosomal repl 98.2 2.3E-05 4.9E-10 87.5 14.9 179 156-350 107-302 (440)
94 TIGR02397 dnaX_nterm DNA polym 98.2 3.5E-05 7.7E-10 84.8 16.3 178 155-354 14-219 (355)
95 COG3903 Predicted ATPase [Gene 98.2 3.8E-06 8.1E-11 88.3 7.7 284 176-474 12-314 (414)
96 PF13401 AAA_22: AAA domain; P 98.2 4.3E-06 9.3E-11 77.2 6.8 111 177-291 3-125 (131)
97 TIGR00362 DnaA chromosomal rep 98.2 3.4E-05 7.3E-10 86.1 15.2 180 156-351 112-308 (405)
98 PRK00149 dnaA chromosomal repl 98.1 2.6E-05 5.6E-10 88.2 14.3 180 156-351 124-320 (450)
99 PRK07994 DNA polymerase III su 98.1 2.6E-05 5.7E-10 89.5 14.2 189 155-353 16-220 (647)
100 TIGR01242 26Sp45 26S proteasom 98.1 1.7E-05 3.6E-10 87.1 12.1 171 155-347 122-328 (364)
101 PF13191 AAA_16: AAA ATPase do 98.1 7.9E-06 1.7E-10 80.6 8.7 46 157-202 2-48 (185)
102 PRK14955 DNA polymerase III su 98.1 3.2E-05 6.9E-10 85.6 14.4 191 155-352 16-227 (397)
103 KOG0989 Replication factor C, 98.1 2.2E-05 4.7E-10 78.9 11.5 183 155-353 36-231 (346)
104 cd01128 rho_factor Transcripti 98.1 5.2E-06 1.1E-10 84.5 7.4 87 177-266 15-115 (249)
105 PRK14951 DNA polymerase III su 98.1 3E-05 6.6E-10 88.8 14.3 192 155-352 16-224 (618)
106 PRK14958 DNA polymerase III su 98.1 0.00012 2.6E-09 83.0 18.9 190 155-352 16-219 (509)
107 PLN03150 hypothetical protein; 98.1 4.2E-06 9.1E-11 98.1 7.6 83 549-632 419-503 (623)
108 PF12799 LRR_4: Leucine Rich r 98.1 2.9E-06 6.2E-11 60.4 3.7 40 548-587 1-40 (44)
109 KOG0531 Protein phosphatase 1, 98.1 4.7E-07 1E-11 101.4 -0.9 194 545-774 69-265 (414)
110 PTZ00202 tuzin; Provisional 98.1 4E-05 8.7E-10 81.5 13.3 157 154-321 261-434 (550)
111 KOG2982 Uncharacterized conser 98.1 8.8E-07 1.9E-11 87.8 0.9 60 705-772 220-287 (418)
112 PRK07471 DNA polymerase III su 98.1 5.8E-05 1.3E-09 81.7 15.0 189 155-354 19-239 (365)
113 PRK07940 DNA polymerase III su 98.1 5.8E-05 1.3E-09 82.4 14.9 184 155-353 5-213 (394)
114 PRK14959 DNA polymerase III su 98.1 0.00013 2.9E-09 83.0 18.1 195 155-357 16-225 (624)
115 PRK09112 DNA polymerase III su 98.1 5.8E-05 1.3E-09 81.2 14.5 193 155-354 23-241 (351)
116 PRK05896 DNA polymerase III su 98.1 3.5E-05 7.6E-10 87.1 13.2 193 155-355 16-223 (605)
117 TIGR00678 holB DNA polymerase 98.1 9.6E-05 2.1E-09 72.9 14.6 154 167-349 4-187 (188)
118 PRK06620 hypothetical protein; 98.0 4.5E-05 9.8E-10 76.3 12.0 132 179-350 45-186 (214)
119 PRK09111 DNA polymerase III su 98.0 9.2E-05 2E-09 85.1 16.0 193 155-353 24-233 (598)
120 PRK14954 DNA polymerase III su 98.0 0.0001 2.2E-09 84.9 16.2 194 155-354 16-230 (620)
121 TIGR02881 spore_V_K stage V sp 98.0 5.6E-05 1.2E-09 78.8 13.0 154 156-325 7-195 (261)
122 PRK14969 DNA polymerase III su 98.0 6.4E-05 1.4E-09 85.8 14.3 178 155-355 16-223 (527)
123 KOG1859 Leucine-rich repeat pr 98.0 1.5E-07 3.3E-12 103.5 -6.5 130 500-633 162-293 (1096)
124 PRK14970 DNA polymerase III su 98.0 0.00015 3.2E-09 80.0 16.2 175 155-349 17-205 (367)
125 PRK09376 rho transcription ter 98.0 1.4E-05 3E-10 84.8 7.4 85 178-266 169-268 (416)
126 PRK14971 DNA polymerase III su 98.0 0.00014 3.1E-09 84.3 16.3 173 155-350 17-219 (614)
127 PRK14086 dnaA chromosomal repl 98.0 0.00027 5.9E-09 80.1 17.9 156 178-349 314-484 (617)
128 PRK07764 DNA polymerase III su 98.0 0.00015 3.2E-09 86.3 16.2 192 155-356 15-225 (824)
129 PRK06305 DNA polymerase III su 98.0 0.00013 2.9E-09 81.6 15.0 176 155-354 17-224 (451)
130 PRK14952 DNA polymerase III su 97.9 0.00018 3.9E-09 82.3 15.7 194 155-358 13-225 (584)
131 PRK12422 chromosomal replicati 97.9 0.00017 3.7E-09 80.4 14.9 151 178-346 141-306 (445)
132 PRK14950 DNA polymerase III su 97.9 8.9E-05 1.9E-09 86.2 12.9 191 155-353 16-221 (585)
133 KOG1909 Ran GTPase-activating 97.9 8.7E-06 1.9E-10 83.0 3.7 162 499-672 89-283 (382)
134 KOG2982 Uncharacterized conser 97.9 2.5E-06 5.4E-11 84.6 -0.2 105 526-630 47-157 (418)
135 PRK08451 DNA polymerase III su 97.9 0.00026 5.7E-09 79.7 15.8 191 155-353 14-218 (535)
136 COG0593 DnaA ATPase involved i 97.9 0.00041 8.8E-09 74.8 16.5 147 177-342 112-275 (408)
137 CHL00181 cbbX CbbX; Provisiona 97.9 0.00032 7E-09 73.6 15.6 131 179-325 60-213 (287)
138 PRK07133 DNA polymerase III su 97.9 0.0002 4.4E-09 82.8 15.0 192 155-354 18-221 (725)
139 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00019 4.1E-09 86.6 15.4 176 155-347 187-390 (852)
140 TIGR02880 cbbX_cfxQ probable R 97.9 0.00027 5.9E-09 74.2 14.5 132 180-324 60-211 (284)
141 PRK14953 DNA polymerase III su 97.9 0.00032 6.8E-09 79.1 15.7 177 155-353 16-220 (486)
142 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.3E-10 56.7 3.2 41 571-612 1-41 (44)
143 KOG1644 U2-associated snRNP A' 97.8 1.6E-05 3.4E-10 75.0 4.2 103 526-630 44-151 (233)
144 TIGR02639 ClpA ATP-dependent C 97.8 0.00015 3.2E-09 86.9 13.4 150 156-322 183-359 (731)
145 PRK15386 type III secretion pr 97.8 9.1E-05 2E-09 79.6 9.9 73 544-628 48-121 (426)
146 KOG4579 Leucine-rich repeat (L 97.8 1.6E-06 3.4E-11 76.1 -2.8 84 522-605 51-134 (177)
147 PRK03992 proteasome-activating 97.8 0.00034 7.3E-09 77.1 14.4 170 155-346 131-336 (389)
148 PRK14965 DNA polymerase III su 97.8 0.00075 1.6E-08 78.1 17.6 191 155-356 16-224 (576)
149 COG2255 RuvB Holliday junction 97.8 0.0011 2.4E-08 66.3 15.8 170 155-352 26-222 (332)
150 TIGR00767 rho transcription te 97.7 6.6E-05 1.4E-09 80.1 7.3 86 177-266 167-267 (415)
151 PRK06647 DNA polymerase III su 97.7 0.00083 1.8E-08 77.0 16.7 190 155-352 16-219 (563)
152 PHA02544 44 clamp loader, smal 97.7 0.0003 6.4E-09 76.0 12.6 140 155-319 21-171 (316)
153 PRK14948 DNA polymerase III su 97.7 0.00097 2.1E-08 77.4 16.9 192 155-353 16-222 (620)
154 KOG4579 Leucine-rich repeat (L 97.7 1.2E-05 2.6E-10 70.7 0.9 88 502-590 53-142 (177)
155 PF05621 TniB: Bacterial TniB 97.7 0.00098 2.1E-08 68.5 14.8 195 156-353 35-261 (302)
156 PRK10536 hypothetical protein; 97.7 0.00029 6.3E-09 70.8 10.7 54 156-214 56-109 (262)
157 KOG1644 U2-associated snRNP A' 97.7 4.5E-05 9.7E-10 72.0 4.4 101 503-603 43-149 (233)
158 PTZ00361 26 proteosome regulat 97.7 0.00031 6.7E-09 77.5 11.6 170 156-346 184-388 (438)
159 KOG3665 ZYG-1-like serine/thre 97.6 3.6E-05 7.7E-10 90.0 4.3 129 502-632 122-263 (699)
160 PRK05563 DNA polymerase III su 97.6 0.00088 1.9E-08 77.1 15.3 187 155-350 16-217 (559)
161 CHL00095 clpC Clp protease ATP 97.6 0.00028 6.2E-09 85.6 11.8 176 156-345 180-379 (821)
162 TIGR00763 lon ATP-dependent pr 97.6 0.0026 5.7E-08 76.8 19.9 48 155-202 320-371 (775)
163 KOG2543 Origin recognition com 97.6 0.00078 1.7E-08 70.0 12.7 160 154-320 5-192 (438)
164 COG1373 Predicted ATPase (AAA+ 97.6 0.00067 1.5E-08 74.7 13.3 135 161-318 23-164 (398)
165 KOG3665 ZYG-1-like serine/thre 97.6 5.4E-05 1.2E-09 88.5 4.6 58 522-581 171-230 (699)
166 PRK05707 DNA polymerase III su 97.6 0.001 2.3E-08 71.0 13.8 166 176-353 20-203 (328)
167 PRK08116 hypothetical protein; 97.6 0.00017 3.6E-09 75.0 7.5 101 179-291 115-220 (268)
168 PTZ00454 26S protease regulato 97.6 0.00094 2E-08 73.2 13.7 172 155-347 145-351 (398)
169 TIGR00602 rad24 checkpoint pro 97.6 0.00034 7.4E-09 80.5 10.4 48 155-202 84-134 (637)
170 PRK11331 5-methylcytosine-spec 97.5 0.0015 3.2E-08 71.3 14.6 105 156-266 176-284 (459)
171 PRK15386 type III secretion pr 97.5 0.00012 2.6E-09 78.6 6.3 82 499-591 49-135 (426)
172 PRK10787 DNA-binding ATP-depen 97.5 0.0016 3.4E-08 77.8 16.2 159 154-321 321-506 (784)
173 PRK11034 clpA ATP-dependent Cl 97.5 0.00067 1.5E-08 80.3 12.9 153 156-322 187-363 (758)
174 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0011 2.3E-08 80.9 14.9 152 156-322 174-350 (852)
175 PRK10865 protein disaggregatio 97.5 0.0012 2.5E-08 80.2 14.9 152 156-321 179-354 (857)
176 KOG2227 Pre-initiation complex 97.5 0.0042 9.1E-08 66.5 16.7 188 154-346 149-361 (529)
177 COG3267 ExeA Type II secretory 97.5 0.0052 1.1E-07 60.9 15.7 173 176-355 49-247 (269)
178 PF05673 DUF815: Protein of un 97.5 0.004 8.6E-08 62.0 15.0 100 155-276 27-131 (249)
179 PF00004 AAA: ATPase family as 97.4 0.00042 9.2E-09 63.8 7.6 68 181-265 1-69 (132)
180 PRK07399 DNA polymerase III su 97.4 0.0034 7.4E-08 66.7 15.3 188 156-353 5-221 (314)
181 PRK12377 putative replication 97.4 0.00059 1.3E-08 69.5 8.7 74 178-265 101-174 (248)
182 KOG0741 AAA+-type ATPase [Post 97.4 0.0044 9.5E-08 67.0 15.2 144 176-343 536-704 (744)
183 COG0542 clpA ATP-binding subun 97.4 0.0075 1.6E-07 70.1 18.2 115 155-276 491-617 (786)
184 TIGR03689 pup_AAA proteasome A 97.4 0.0019 4.1E-08 72.5 12.8 159 156-323 183-380 (512)
185 TIGR01241 FtsH_fam ATP-depende 97.4 0.003 6.4E-08 72.4 14.8 176 155-353 55-267 (495)
186 CHL00176 ftsH cell division pr 97.3 0.0022 4.8E-08 74.5 13.4 170 155-345 183-386 (638)
187 KOG2123 Uncharacterized conser 97.3 1.9E-05 4.2E-10 77.8 -3.4 101 523-626 18-124 (388)
188 PRK08181 transposase; Validate 97.3 0.00053 1.1E-08 70.8 6.5 72 179-265 107-178 (269)
189 PRK08118 topology modulation p 97.2 0.00054 1.2E-08 65.7 6.2 36 179-214 2-37 (167)
190 smart00382 AAA ATPases associa 97.2 0.0016 3.5E-08 60.6 9.4 85 179-267 3-91 (148)
191 KOG1514 Origin recognition com 97.2 0.0083 1.8E-07 67.5 15.5 194 155-354 396-622 (767)
192 PRK08939 primosomal protein Dn 97.1 0.0011 2.4E-08 70.1 7.7 118 159-291 135-260 (306)
193 KOG2739 Leucine-rich acidic nu 97.1 0.00026 5.6E-09 70.1 2.7 82 548-632 43-129 (260)
194 PRK08769 DNA polymerase III su 97.1 0.0088 1.9E-07 63.4 14.3 174 163-354 12-209 (319)
195 PRK07952 DNA replication prote 97.1 0.0019 4.2E-08 65.6 9.1 91 163-266 84-174 (244)
196 PF10443 RNA12: RNA12 protein; 97.1 0.031 6.7E-07 60.3 18.3 192 160-364 1-289 (431)
197 PRK07261 topology modulation p 97.1 0.001 2.3E-08 64.1 6.7 67 180-265 2-68 (171)
198 PRK06526 transposase; Provisio 97.1 0.00033 7.1E-09 71.9 3.3 73 178-265 98-170 (254)
199 PRK08058 DNA polymerase III su 97.1 0.008 1.7E-07 64.8 14.0 160 156-320 6-181 (329)
200 KOG1947 Leucine rich repeat pr 97.1 8.7E-05 1.9E-09 85.6 -1.2 110 522-631 186-307 (482)
201 PRK06835 DNA replication prote 97.1 0.0092 2E-07 63.7 14.0 100 179-291 184-288 (329)
202 KOG2739 Leucine-rich acidic nu 97.1 0.00027 5.9E-09 69.9 2.2 82 502-583 43-128 (260)
203 COG5238 RNA1 Ran GTPase-activa 97.0 0.00024 5.2E-09 70.0 1.4 88 545-632 27-133 (388)
204 KOG0991 Replication factor C, 97.0 0.0011 2.4E-08 63.9 5.6 92 155-266 27-125 (333)
205 PF02562 PhoH: PhoH-like prote 97.0 0.0008 1.7E-08 65.9 4.5 122 160-292 5-156 (205)
206 PF04665 Pox_A32: Poxvirus A32 97.0 0.0017 3.7E-08 65.1 6.9 37 179-218 14-50 (241)
207 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0027 5.9E-08 76.8 9.7 105 155-266 566-680 (852)
208 PRK09183 transposase/IS protei 97.0 0.001 2.2E-08 68.9 5.2 74 178-265 102-175 (259)
209 COG2884 FtsE Predicted ATPase 96.9 0.0033 7.1E-08 59.2 7.9 131 177-311 27-218 (223)
210 COG1484 DnaC DNA replication p 96.9 0.0031 6.7E-08 64.9 8.6 75 177-265 104-178 (254)
211 KOG0733 Nuclear AAA ATPase (VC 96.9 0.013 2.8E-07 64.7 13.4 93 156-265 191-293 (802)
212 COG1223 Predicted ATPase (AAA+ 96.9 0.016 3.5E-07 57.2 12.3 170 155-346 121-318 (368)
213 PF00448 SRP54: SRP54-type pro 96.9 0.0029 6.4E-08 62.3 7.6 84 178-264 1-93 (196)
214 COG0466 Lon ATP-dependent Lon 96.9 0.0083 1.8E-07 67.8 11.6 158 155-321 323-508 (782)
215 PRK06921 hypothetical protein; 96.8 0.0019 4E-08 67.0 5.9 71 177-263 116-186 (266)
216 PHA00729 NTP-binding motif con 96.8 0.005 1.1E-07 61.1 8.5 34 167-202 8-41 (226)
217 COG1222 RPT1 ATP-dependent 26S 96.8 0.031 6.8E-07 58.1 14.2 181 156-358 152-372 (406)
218 KOG1947 Leucine rich repeat pr 96.8 0.00027 6E-09 81.4 -0.9 114 544-671 184-307 (482)
219 PF03215 Rad17: Rad17 cell cyc 96.7 0.012 2.5E-07 66.8 12.0 55 157-216 21-78 (519)
220 COG1102 Cmk Cytidylate kinase 96.7 0.0045 9.7E-08 56.6 6.9 46 180-233 2-47 (179)
221 PRK12608 transcription termina 96.7 0.0046 1E-07 65.9 8.1 98 165-265 121-231 (380)
222 PRK04132 replication factor C 96.7 0.02 4.4E-07 68.1 13.8 145 186-352 574-730 (846)
223 TIGR02639 ClpA ATP-dependent C 96.7 0.0081 1.8E-07 72.2 10.8 102 155-266 454-565 (731)
224 PRK12727 flagellar biosynthesi 96.6 0.058 1.3E-06 60.3 16.1 83 177-264 349-438 (559)
225 PRK06871 DNA polymerase III su 96.6 0.046 1E-06 58.1 14.9 173 164-350 11-200 (325)
226 PF01695 IstB_IS21: IstB-like 96.6 0.002 4.2E-08 62.5 4.2 74 178-266 47-120 (178)
227 TIGR01243 CDC48 AAA family ATP 96.6 0.03 6.6E-07 67.6 15.1 171 156-347 454-657 (733)
228 PRK10865 protein disaggregatio 96.6 0.0079 1.7E-07 73.1 10.1 104 155-265 568-681 (857)
229 TIGR01243 CDC48 AAA family ATP 96.6 0.018 3.9E-07 69.4 13.1 172 156-348 179-382 (733)
230 TIGR03346 chaperone_ClpB ATP-d 96.6 0.0096 2.1E-07 72.7 10.5 105 155-266 565-679 (852)
231 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0023 5E-08 67.9 4.6 47 156-202 52-102 (361)
232 CHL00195 ycf46 Ycf46; Provisio 96.5 0.029 6.3E-07 63.2 13.3 173 156-347 229-429 (489)
233 PF13207 AAA_17: AAA domain; P 96.5 0.0019 4.1E-08 58.5 3.3 23 180-202 1-23 (121)
234 KOG2228 Origin recognition com 96.5 0.033 7.2E-07 57.3 12.1 165 155-322 24-220 (408)
235 PF14532 Sigma54_activ_2: Sigm 96.5 0.0026 5.7E-08 59.0 4.0 107 158-292 1-110 (138)
236 CHL00095 clpC Clp protease ATP 96.5 0.014 3E-07 71.2 11.0 105 155-266 509-623 (821)
237 KOG0730 AAA+-type ATPase [Post 96.5 0.1 2.2E-06 58.8 16.4 162 156-336 435-630 (693)
238 COG2812 DnaX DNA polymerase II 96.4 0.02 4.3E-07 64.0 11.0 185 155-348 16-215 (515)
239 cd03216 ABC_Carb_Monos_I This 96.4 0.0093 2E-07 57.1 7.1 113 178-297 26-147 (163)
240 KOG0734 AAA+-type ATPase conta 96.4 0.024 5.2E-07 61.7 10.6 47 156-202 305-361 (752)
241 TIGR02974 phageshock_pspF psp 96.4 0.029 6.4E-07 60.3 11.6 46 157-202 1-46 (329)
242 PRK07993 DNA polymerase III su 96.4 0.057 1.2E-06 58.0 13.7 175 163-352 10-203 (334)
243 PRK04296 thymidine kinase; Pro 96.3 0.0055 1.2E-07 60.3 5.4 109 179-293 3-117 (190)
244 PRK06696 uridine kinase; Valid 96.3 0.0057 1.2E-07 62.0 5.7 44 159-202 2-46 (223)
245 cd00983 recA RecA is a bacter 96.3 0.017 3.6E-07 61.1 9.0 86 176-264 53-143 (325)
246 COG1875 NYN ribonuclease and A 96.3 0.015 3.3E-07 60.4 8.4 53 158-212 227-279 (436)
247 PF13177 DNA_pol3_delta2: DNA 96.3 0.023 5E-07 54.2 9.3 144 159-309 1-162 (162)
248 PRK06762 hypothetical protein; 96.3 0.029 6.3E-07 53.9 10.0 25 178-202 2-26 (166)
249 PRK05541 adenylylsulfate kinas 96.3 0.0094 2E-07 58.0 6.6 38 176-216 5-42 (176)
250 PRK11034 clpA ATP-dependent Cl 96.2 0.011 2.4E-07 70.2 8.0 102 155-266 458-569 (758)
251 PRK15429 formate hydrogenlyase 96.2 0.072 1.6E-06 63.9 15.0 48 155-202 376-423 (686)
252 cd01133 F1-ATPase_beta F1 ATP 96.2 0.016 3.4E-07 59.6 7.8 86 178-266 69-175 (274)
253 PRK06090 DNA polymerase III su 96.2 0.1 2.2E-06 55.3 14.1 174 163-354 11-202 (319)
254 TIGR02012 tigrfam_recA protein 96.1 0.025 5.4E-07 59.8 9.3 87 176-265 53-144 (321)
255 cd01131 PilT Pilus retraction 96.1 0.01 2.2E-07 58.9 5.9 109 179-294 2-111 (198)
256 cd03214 ABC_Iron-Siderophores_ 96.1 0.021 4.5E-07 55.8 8.0 118 177-298 24-164 (180)
257 TIGR02640 gas_vesic_GvpN gas v 96.1 0.055 1.2E-06 56.3 11.6 36 163-202 10-45 (262)
258 PF07693 KAP_NTPase: KAP famil 96.1 0.21 4.5E-06 54.1 16.6 42 161-202 2-44 (325)
259 PRK11608 pspF phage shock prot 96.1 0.011 2.4E-07 63.5 6.5 48 155-202 6-53 (326)
260 PF13604 AAA_30: AAA domain; P 96.1 0.0051 1.1E-07 60.8 3.6 104 177-290 17-129 (196)
261 PRK10733 hflB ATP-dependent me 96.0 0.084 1.8E-06 62.3 14.2 146 179-345 186-355 (644)
262 KOG0744 AAA+-type ATPase [Post 96.0 0.024 5.1E-07 57.9 8.0 80 178-265 177-261 (423)
263 KOG2035 Replication factor C, 96.0 0.13 2.8E-06 51.6 12.8 215 157-376 15-261 (351)
264 KOG2004 Mitochondrial ATP-depe 96.0 0.082 1.8E-06 59.9 12.8 48 155-202 411-462 (906)
265 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.046 1E-06 56.0 10.4 47 176-225 19-65 (237)
266 COG0542 clpA ATP-binding subun 96.0 0.045 9.8E-07 63.9 11.2 151 157-321 172-346 (786)
267 KOG2123 Uncharacterized conser 96.0 0.003 6.6E-08 62.7 1.5 70 490-559 29-99 (388)
268 COG1126 GlnQ ABC-type polar am 96.0 0.039 8.4E-07 53.4 8.8 121 177-301 27-205 (240)
269 PLN00020 ribulose bisphosphate 96.0 0.0079 1.7E-07 63.4 4.5 72 176-264 146-222 (413)
270 COG1136 SalX ABC-type antimicr 96.0 0.029 6.2E-07 55.7 8.3 60 240-300 146-211 (226)
271 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.037 8.1E-07 55.8 9.1 117 178-296 30-203 (254)
272 cd01121 Sms Sms (bacterial rad 95.9 0.028 6E-07 61.2 8.8 83 177-265 81-169 (372)
273 PRK15455 PrkA family serine pr 95.9 0.0092 2E-07 66.7 5.1 47 156-202 77-127 (644)
274 PRK09354 recA recombinase A; P 95.9 0.053 1.1E-06 57.8 10.6 86 176-264 58-148 (349)
275 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.034 7.5E-07 51.9 8.3 106 177-298 25-133 (144)
276 PRK10867 signal recognition pa 95.9 0.05 1.1E-06 60.2 10.6 86 177-264 99-193 (433)
277 PRK07667 uridine kinase; Provi 95.9 0.012 2.5E-07 58.2 5.3 39 164-202 3-41 (193)
278 PF01583 APS_kinase: Adenylyls 95.9 0.0059 1.3E-07 56.9 2.9 37 179-218 3-39 (156)
279 cd01393 recA_like RecA is a b 95.9 0.067 1.5E-06 54.4 11.0 87 176-265 17-125 (226)
280 PRK06964 DNA polymerase III su 95.9 0.15 3.2E-06 54.7 13.7 91 253-354 131-226 (342)
281 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.043 9.4E-07 51.5 8.5 111 179-292 3-138 (159)
282 COG1618 Predicted nucleotide k 95.8 0.01 2.2E-07 54.4 3.9 25 178-202 5-29 (179)
283 TIGR02237 recomb_radB DNA repa 95.8 0.04 8.6E-07 55.3 8.8 40 176-218 10-49 (209)
284 KOG0731 AAA+-type ATPase conta 95.8 0.17 3.7E-06 58.8 14.6 174 156-350 312-521 (774)
285 PRK00771 signal recognition pa 95.8 0.053 1.1E-06 60.1 10.3 84 177-264 94-185 (437)
286 PRK09361 radB DNA repair and r 95.8 0.034 7.3E-07 56.6 8.3 40 176-218 21-60 (225)
287 PF00154 RecA: recA bacterial 95.8 0.075 1.6E-06 56.0 10.8 87 177-266 52-143 (322)
288 PRK11889 flhF flagellar biosyn 95.7 0.077 1.7E-06 57.0 10.8 84 177-265 240-331 (436)
289 PF00560 LRR_1: Leucine Rich R 95.7 0.0042 9E-08 36.7 0.8 17 550-566 2-18 (22)
290 TIGR03499 FlhF flagellar biosy 95.7 0.047 1E-06 57.4 9.3 82 177-263 193-281 (282)
291 KOG0735 AAA+-type ATPase [Post 95.7 0.041 8.8E-07 62.1 9.0 157 177-353 430-616 (952)
292 PRK04040 adenylate kinase; Pro 95.7 0.043 9.2E-07 53.7 8.4 46 179-230 3-48 (188)
293 cd03222 ABC_RNaseL_inhibitor T 95.7 0.021 4.6E-07 55.1 6.1 114 177-305 24-145 (177)
294 PRK06067 flagellar accessory p 95.7 0.069 1.5E-06 54.6 10.2 86 176-264 23-130 (234)
295 PRK05342 clpX ATP-dependent pr 95.7 0.03 6.5E-07 61.8 7.9 49 154-202 70-132 (412)
296 PF00560 LRR_1: Leucine Rich R 95.7 0.0048 1E-07 36.4 1.0 22 572-593 1-22 (22)
297 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.032 6.9E-07 54.7 7.4 35 180-222 1-35 (183)
298 PF13671 AAA_33: AAA domain; P 95.7 0.0097 2.1E-07 55.6 3.5 23 180-202 1-23 (143)
299 cd01394 radB RadB. The archaea 95.7 0.063 1.4E-06 54.3 9.7 40 176-218 17-56 (218)
300 cd03228 ABCC_MRP_Like The MRP 95.7 0.048 1E-06 52.7 8.4 117 177-297 27-160 (171)
301 COG1066 Sms Predicted ATP-depe 95.6 0.047 1E-06 58.0 8.7 82 177-265 92-179 (456)
302 COG2607 Predicted ATPase (AAA+ 95.6 0.056 1.2E-06 53.0 8.5 98 156-277 61-165 (287)
303 cd03230 ABC_DR_subfamily_A Thi 95.6 0.063 1.4E-06 52.0 9.3 120 178-301 26-164 (173)
304 COG1124 DppF ABC-type dipeptid 95.6 0.058 1.2E-06 53.4 8.8 26 177-202 32-57 (252)
305 TIGR01817 nifA Nif-specific re 95.6 0.025 5.5E-07 65.6 7.6 64 154-220 195-258 (534)
306 cd03115 SRP The signal recogni 95.6 0.035 7.5E-07 53.8 7.4 23 180-202 2-24 (173)
307 PRK05022 anaerobic nitric oxid 95.6 0.06 1.3E-06 61.9 10.4 66 155-223 187-252 (509)
308 PRK13540 cytochrome c biogenes 95.6 0.038 8.3E-07 55.0 7.7 26 177-202 26-51 (200)
309 PRK08699 DNA polymerase III su 95.6 0.055 1.2E-06 57.8 9.3 153 177-349 20-202 (325)
310 KOG0733 Nuclear AAA ATPase (VC 95.6 0.16 3.6E-06 56.5 12.8 150 177-347 544-718 (802)
311 TIGR01425 SRP54_euk signal rec 95.6 0.3 6.6E-06 53.8 15.1 26 177-202 99-124 (429)
312 COG0572 Udk Uridine kinase [Nu 95.6 0.035 7.6E-07 54.4 7.0 75 176-255 6-85 (218)
313 KOG0736 Peroxisome assembly fa 95.6 0.16 3.5E-06 58.1 13.0 93 155-266 672-776 (953)
314 KOG1969 DNA replication checkp 95.6 0.032 7E-07 63.2 7.6 68 176-266 324-399 (877)
315 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.065 1.4E-06 50.9 8.8 114 178-298 25-146 (157)
316 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.078 1.7E-06 54.3 10.1 42 176-218 17-62 (235)
317 cd01120 RecA-like_NTPases RecA 95.5 0.033 7.1E-07 53.2 6.9 36 180-218 1-36 (165)
318 PF08423 Rad51: Rad51; InterP 95.5 0.051 1.1E-06 56.1 8.6 88 177-264 37-143 (256)
319 PRK12723 flagellar biosynthesi 95.5 0.097 2.1E-06 57.1 11.1 85 177-265 173-265 (388)
320 PRK00889 adenylylsulfate kinas 95.5 0.041 8.8E-07 53.4 7.4 26 177-202 3-28 (175)
321 PRK14974 cell division protein 95.5 0.11 2.3E-06 55.7 10.9 86 177-265 139-233 (336)
322 PRK06547 hypothetical protein; 95.5 0.021 4.5E-07 55.0 5.1 27 176-202 13-39 (172)
323 COG0470 HolB ATPase involved i 95.5 0.057 1.2E-06 58.5 9.2 47 156-202 2-48 (325)
324 cd03246 ABCC_Protease_Secretio 95.4 0.04 8.7E-07 53.4 7.1 115 178-296 28-160 (173)
325 cd03229 ABC_Class3 This class 95.4 0.034 7.5E-07 54.1 6.6 25 178-202 26-50 (178)
326 cd02027 APSK Adenosine 5'-phos 95.4 0.047 1E-06 51.3 7.3 23 180-202 1-23 (149)
327 cd01124 KaiC KaiC is a circadi 95.4 0.056 1.2E-06 53.1 8.1 35 181-218 2-36 (187)
328 PF13238 AAA_18: AAA domain; P 95.4 0.012 2.6E-07 53.8 3.0 22 181-202 1-22 (129)
329 PRK14722 flhF flagellar biosyn 95.4 0.052 1.1E-06 58.7 8.2 83 177-264 136-225 (374)
330 COG4088 Predicted nucleotide k 95.4 0.013 2.8E-07 55.9 3.1 24 179-202 2-25 (261)
331 PRK11823 DNA repair protein Ra 95.4 0.057 1.2E-06 60.6 8.9 82 177-264 79-166 (446)
332 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.13 2.9E-06 52.4 10.9 40 176-218 18-57 (229)
333 TIGR00064 ftsY signal recognit 95.3 0.14 2.9E-06 53.4 10.9 86 176-264 70-164 (272)
334 PRK04328 hypothetical protein; 95.3 0.1 2.3E-06 53.7 10.1 40 176-218 21-60 (249)
335 cd03247 ABCC_cytochrome_bd The 95.3 0.053 1.1E-06 52.8 7.5 115 178-296 28-161 (178)
336 PF08433 KTI12: Chromatin asso 95.3 0.021 4.5E-07 59.2 4.8 24 179-202 2-25 (270)
337 TIGR00150 HI0065_YjeE ATPase, 95.3 0.032 6.9E-07 50.6 5.3 41 162-202 6-46 (133)
338 KOG3347 Predicted nucleotide k 95.3 0.039 8.5E-07 49.8 5.7 69 178-254 7-76 (176)
339 KOG1051 Chaperone HSP104 and r 95.3 0.075 1.6E-06 63.0 9.6 104 155-266 562-672 (898)
340 PF13306 LRR_5: Leucine rich r 95.2 0.026 5.6E-07 51.5 4.8 99 523-627 11-111 (129)
341 TIGR02858 spore_III_AA stage I 95.2 0.12 2.5E-06 53.7 10.0 123 164-294 98-231 (270)
342 cd03223 ABCD_peroxisomal_ALDP 95.2 0.087 1.9E-06 50.6 8.6 113 177-296 26-152 (166)
343 PRK13531 regulatory ATPase Rav 95.2 0.028 6.1E-07 62.1 5.7 44 155-202 20-63 (498)
344 PRK09270 nucleoside triphospha 95.2 0.028 6.1E-07 57.2 5.4 27 176-202 31-57 (229)
345 TIGR00382 clpX endopeptidase C 95.2 0.057 1.2E-06 59.3 8.0 49 154-202 76-140 (413)
346 PF00158 Sigma54_activat: Sigm 95.2 0.06 1.3E-06 51.5 7.3 64 157-223 1-64 (168)
347 PF00485 PRK: Phosphoribulokin 95.2 0.016 3.4E-07 57.4 3.3 23 180-202 1-23 (194)
348 TIGR02329 propionate_PrpR prop 95.2 0.19 4.2E-06 57.4 12.4 48 155-202 212-259 (526)
349 TIGR00959 ffh signal recogniti 95.2 0.085 1.9E-06 58.3 9.2 86 177-264 98-192 (428)
350 KOG0927 Predicted transporter 95.2 0.061 1.3E-06 59.1 7.8 64 241-305 226-292 (614)
351 cd02019 NK Nucleoside/nucleoti 95.1 0.017 3.7E-07 46.0 2.8 23 180-202 1-23 (69)
352 cd03238 ABC_UvrA The excision 95.1 0.069 1.5E-06 51.5 7.5 116 177-296 20-153 (176)
353 KOG0743 AAA+-type ATPase [Post 95.1 0.3 6.5E-06 52.9 12.7 150 178-360 235-417 (457)
354 TIGR00416 sms DNA repair prote 95.1 0.088 1.9E-06 59.1 9.4 84 176-265 92-181 (454)
355 PRK13539 cytochrome c biogenes 95.1 0.074 1.6E-06 53.3 8.0 26 177-202 27-52 (207)
356 cd03269 ABC_putative_ATPase Th 95.1 0.083 1.8E-06 53.1 8.4 25 178-202 26-50 (210)
357 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.1 0.11 2.4E-06 52.7 9.3 26 177-202 47-72 (224)
358 PRK08233 hypothetical protein; 95.1 0.019 4.2E-07 56.1 3.6 25 178-202 3-27 (182)
359 PRK05703 flhF flagellar biosyn 95.1 0.14 3.1E-06 56.9 10.8 82 178-264 221-309 (424)
360 COG4608 AppF ABC-type oligopep 95.1 0.093 2E-06 53.1 8.4 137 177-318 38-199 (268)
361 cd03263 ABC_subfamily_A The AB 95.1 0.082 1.8E-06 53.5 8.3 25 178-202 28-52 (220)
362 cd01135 V_A-ATPase_B V/A-type 95.1 0.095 2.1E-06 53.7 8.5 88 179-266 70-178 (276)
363 COG0488 Uup ATPase components 95.0 0.072 1.6E-06 60.6 8.5 128 178-307 348-511 (530)
364 COG4618 ArpD ABC-type protease 95.0 0.068 1.5E-06 58.3 7.7 25 178-202 362-386 (580)
365 TIGR03522 GldA_ABC_ATP gliding 95.0 0.11 2.5E-06 55.3 9.5 25 178-202 28-52 (301)
366 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.047 1E-06 54.7 6.2 119 178-298 29-160 (213)
367 cd03266 ABC_NatA_sodium_export 95.0 0.09 2E-06 53.1 8.4 25 178-202 31-55 (218)
368 PRK05480 uridine/cytidine kina 95.0 0.022 4.9E-07 57.1 3.9 27 176-202 4-30 (209)
369 cd03265 ABC_DrrA DrrA is the A 95.0 0.092 2E-06 53.2 8.4 25 178-202 26-50 (220)
370 cd03237 ABC_RNaseL_inhibitor_d 95.0 0.073 1.6E-06 54.8 7.7 25 178-202 25-49 (246)
371 TIGR03740 galliderm_ABC gallid 95.0 0.09 2E-06 53.3 8.4 25 178-202 26-50 (223)
372 PRK10463 hydrogenase nickel in 95.0 0.22 4.7E-06 51.7 10.9 27 176-202 102-128 (290)
373 cd03264 ABC_drug_resistance_li 94.9 0.097 2.1E-06 52.6 8.4 23 180-202 27-49 (211)
374 COG1116 TauB ABC-type nitrate/ 94.9 0.054 1.2E-06 54.0 6.2 26 177-202 28-53 (248)
375 PRK12726 flagellar biosynthesi 94.9 0.11 2.5E-06 55.5 8.9 84 177-265 205-296 (407)
376 PRK13538 cytochrome c biogenes 94.9 0.1 2.2E-06 52.1 8.3 25 178-202 27-51 (204)
377 PRK03846 adenylylsulfate kinas 94.9 0.075 1.6E-06 52.7 7.3 27 176-202 22-48 (198)
378 cd03259 ABC_Carb_Solutes_like 94.9 0.083 1.8E-06 53.2 7.7 25 178-202 26-50 (213)
379 COG1120 FepC ABC-type cobalami 94.9 0.14 3.1E-06 52.0 9.2 60 243-303 145-210 (258)
380 PRK04301 radA DNA repair and r 94.9 0.16 3.4E-06 54.6 10.2 55 176-230 100-162 (317)
381 PRK12597 F0F1 ATP synthase sub 94.8 0.071 1.5E-06 59.2 7.4 87 178-266 143-249 (461)
382 PF06745 KaiC: KaiC; InterPro 94.8 0.06 1.3E-06 54.8 6.5 87 176-264 17-125 (226)
383 cd03215 ABC_Carb_Monos_II This 94.8 0.085 1.8E-06 51.6 7.3 25 178-202 26-50 (182)
384 PRK00279 adk adenylate kinase; 94.8 0.08 1.7E-06 53.3 7.3 79 180-266 2-89 (215)
385 cd03226 ABC_cobalt_CbiO_domain 94.8 0.12 2.7E-06 51.5 8.7 25 178-202 26-50 (205)
386 TIGR02324 CP_lyasePhnL phospho 94.8 0.12 2.5E-06 52.5 8.6 25 178-202 34-58 (224)
387 PF03308 ArgK: ArgK protein; 94.8 0.063 1.4E-06 53.9 6.2 55 163-218 14-68 (266)
388 cd03301 ABC_MalK_N The N-termi 94.8 0.099 2.1E-06 52.6 7.9 25 178-202 26-50 (213)
389 PRK10820 DNA-binding transcrip 94.8 0.11 2.5E-06 59.7 9.3 67 155-224 204-270 (520)
390 PRK13543 cytochrome c biogenes 94.7 0.13 2.7E-06 51.9 8.6 26 177-202 36-61 (214)
391 TIGR03864 PQQ_ABC_ATP ABC tran 94.7 0.12 2.6E-06 53.0 8.5 26 177-202 26-51 (236)
392 PTZ00301 uridine kinase; Provi 94.7 0.026 5.7E-07 56.1 3.5 25 178-202 3-27 (210)
393 PRK05973 replicative DNA helic 94.7 0.22 4.8E-06 50.3 10.1 40 176-218 62-101 (237)
394 PF07726 AAA_3: ATPase family 94.7 0.017 3.8E-07 51.3 1.9 28 181-211 2-29 (131)
395 TIGR00235 udk uridine kinase. 94.7 0.028 6.2E-07 56.2 3.7 27 176-202 4-30 (207)
396 cd03268 ABC_BcrA_bacitracin_re 94.7 0.12 2.5E-06 51.9 8.2 26 177-202 25-50 (208)
397 cd02021 GntK Gluconate kinase 94.7 0.14 3E-06 48.3 8.1 23 180-202 1-23 (150)
398 cd03293 ABC_NrtD_SsuB_transpor 94.7 0.13 2.7E-06 52.2 8.4 25 178-202 30-54 (220)
399 TIGR00708 cobA cob(I)alamin ad 94.7 0.16 3.4E-06 48.4 8.3 114 177-292 4-140 (173)
400 smart00534 MUTSac ATPase domai 94.6 0.025 5.4E-07 55.4 3.0 116 180-298 1-128 (185)
401 cd03267 ABC_NatA_like Similar 94.6 0.12 2.6E-06 52.9 8.3 25 178-202 47-71 (236)
402 TIGR01360 aden_kin_iso1 adenyl 94.6 0.03 6.4E-07 55.1 3.6 26 177-202 2-27 (188)
403 PRK08972 fliI flagellum-specif 94.6 0.072 1.6E-06 58.4 6.7 85 177-266 161-264 (444)
404 cd03244 ABCC_MRP_domain2 Domai 94.6 0.15 3.3E-06 51.6 8.9 25 178-202 30-54 (221)
405 cd03369 ABCC_NFT1 Domain 2 of 94.6 0.16 3.6E-06 50.7 8.9 26 177-202 33-58 (207)
406 PRK09544 znuC high-affinity zi 94.6 0.13 2.9E-06 53.1 8.4 26 177-202 29-54 (251)
407 PF06309 Torsin: Torsin; Inte 94.6 0.076 1.6E-06 47.2 5.5 47 156-202 26-77 (127)
408 PRK03839 putative kinase; Prov 94.5 0.029 6.2E-07 54.8 3.2 23 180-202 2-24 (180)
409 PRK12678 transcription termina 94.5 0.053 1.2E-06 60.6 5.5 87 178-266 416-515 (672)
410 TIGR00390 hslU ATP-dependent p 94.5 0.056 1.2E-06 58.6 5.5 48 155-202 12-71 (441)
411 PRK14721 flhF flagellar biosyn 94.5 0.18 3.9E-06 55.5 9.5 81 178-263 191-278 (420)
412 cd00544 CobU Adenosylcobinamid 94.5 0.04 8.7E-07 52.7 4.0 142 181-348 2-167 (169)
413 KOG1970 Checkpoint RAD17-RFC c 94.5 0.25 5.4E-06 54.5 10.3 50 161-215 88-142 (634)
414 COG0396 sufC Cysteine desulfur 94.5 0.26 5.7E-06 48.3 9.4 59 241-301 149-213 (251)
415 PTZ00494 tuzin-like protein; P 94.5 1.2 2.6E-05 48.2 15.0 161 154-321 370-544 (664)
416 TIGR03305 alt_F1F0_F1_bet alte 94.5 0.1 2.2E-06 57.6 7.5 87 178-266 138-244 (449)
417 KOG2170 ATPase of the AAA+ sup 94.4 0.11 2.5E-06 52.7 7.1 103 155-266 82-190 (344)
418 cd03245 ABCC_bacteriocin_expor 94.4 0.18 3.8E-06 51.1 8.8 26 177-202 29-54 (220)
419 PRK14247 phosphate ABC transpo 94.4 0.18 3.9E-06 52.2 9.0 25 178-202 29-53 (250)
420 PRK05201 hslU ATP-dependent pr 94.4 0.068 1.5E-06 58.0 5.9 49 154-202 14-74 (443)
421 PRK05439 pantothenate kinase; 94.4 0.2 4.3E-06 52.8 9.2 27 176-202 84-110 (311)
422 PF13481 AAA_25: AAA domain; P 94.4 0.11 2.3E-06 51.4 7.0 41 178-218 32-79 (193)
423 PRK06217 hypothetical protein; 94.4 0.036 7.7E-07 54.3 3.5 23 180-202 3-25 (183)
424 TIGR00455 apsK adenylylsulfate 94.4 0.14 3.1E-06 50.1 7.8 27 176-202 16-42 (184)
425 COG1703 ArgK Putative periplas 94.4 0.063 1.4E-06 54.7 5.2 54 164-218 37-90 (323)
426 KOG0652 26S proteasome regulat 94.3 0.48 1E-05 47.0 10.9 55 148-202 162-229 (424)
427 cd03233 ABC_PDR_domain1 The pl 94.3 0.24 5.2E-06 49.3 9.4 26 177-202 32-57 (202)
428 TIGR01188 drrA daunorubicin re 94.3 0.26 5.7E-06 52.5 10.3 25 178-202 19-43 (302)
429 TIGR00968 3a0106s01 sulfate AB 94.3 0.14 3E-06 52.5 8.0 26 177-202 25-50 (237)
430 PRK05800 cobU adenosylcobinami 94.3 0.0075 1.6E-07 57.9 -1.4 23 180-202 3-25 (170)
431 cd03218 ABC_YhbG The ABC trans 94.3 0.14 3.1E-06 52.2 8.0 25 178-202 26-50 (232)
432 KOG3864 Uncharacterized conser 94.3 0.0043 9.3E-08 59.0 -2.9 63 740-814 124-189 (221)
433 cd03295 ABC_OpuCA_Osmoprotecti 94.3 0.14 3E-06 52.8 7.8 25 178-202 27-51 (242)
434 TIGR01069 mutS2 MutS2 family p 94.3 0.021 4.6E-07 68.2 2.0 187 177-376 321-523 (771)
435 COG1428 Deoxynucleoside kinase 94.3 0.034 7.4E-07 53.8 3.0 25 178-202 4-28 (216)
436 TIGR03574 selen_PSTK L-seryl-t 94.3 0.072 1.6E-06 55.1 5.8 23 180-202 1-23 (249)
437 cd03231 ABC_CcmA_heme_exporter 94.3 0.16 3.5E-06 50.5 8.0 26 177-202 25-50 (201)
438 TIGR02236 recomb_radA DNA repa 94.2 0.29 6.3E-06 52.4 10.5 56 176-231 93-156 (310)
439 PRK14723 flhF flagellar biosyn 94.2 0.27 5.9E-06 57.9 10.7 82 178-264 185-273 (767)
440 PRK00625 shikimate kinase; Pro 94.2 0.035 7.7E-07 53.4 3.0 23 180-202 2-24 (173)
441 TIGR02239 recomb_RAD51 DNA rep 94.2 0.22 4.7E-06 53.2 9.3 56 176-231 94-157 (316)
442 TIGR01420 pilT_fam pilus retra 94.2 0.11 2.3E-06 56.4 7.1 108 178-292 122-230 (343)
443 PLN03187 meiotic recombination 94.2 0.22 4.8E-06 53.4 9.3 89 176-264 124-231 (344)
444 PRK11247 ssuB aliphatic sulfon 94.2 0.19 4.1E-06 52.1 8.6 25 178-202 38-62 (257)
445 COG0529 CysC Adenylylsulfate k 94.2 0.12 2.5E-06 48.4 6.1 27 176-202 21-47 (197)
446 PRK01184 hypothetical protein; 94.2 0.15 3.3E-06 49.9 7.5 39 179-226 2-40 (184)
447 PF00910 RNA_helicase: RNA hel 94.2 0.032 6.9E-07 49.0 2.4 22 181-202 1-22 (107)
448 PRK09280 F0F1 ATP synthase sub 94.2 0.13 2.8E-06 57.0 7.6 87 178-266 144-250 (463)
449 COG1936 Predicted nucleotide k 94.1 0.037 8.1E-07 51.6 2.8 20 180-199 2-21 (180)
450 TIGR03878 thermo_KaiC_2 KaiC d 94.1 0.23 5E-06 51.5 9.0 39 177-218 35-73 (259)
451 PF03205 MobB: Molybdopterin g 94.1 0.067 1.5E-06 49.5 4.5 37 179-217 1-37 (140)
452 PRK08927 fliI flagellum-specif 94.1 0.18 3.8E-06 55.6 8.4 85 177-266 157-260 (442)
453 PRK08533 flagellar accessory p 94.1 0.23 5.1E-06 50.4 8.9 39 177-218 23-61 (230)
454 PRK08149 ATP synthase SpaL; Va 94.1 0.17 3.7E-06 55.6 8.3 85 177-266 150-253 (428)
455 TIGR01351 adk adenylate kinase 94.1 0.096 2.1E-06 52.5 6.0 77 181-265 2-88 (210)
456 cd03300 ABC_PotA_N PotA is an 94.1 0.17 3.7E-06 51.7 7.9 25 178-202 26-50 (232)
457 PF00006 ATP-synt_ab: ATP synt 94.1 0.2 4.4E-06 49.9 8.1 35 179-218 16-50 (215)
458 TIGR02238 recomb_DMC1 meiotic 94.0 0.4 8.8E-06 51.0 10.8 89 176-264 94-201 (313)
459 PF13504 LRR_7: Leucine rich r 94.0 0.034 7.3E-07 30.4 1.4 16 572-587 2-17 (17)
460 KOG0739 AAA+-type ATPase [Post 94.0 0.26 5.6E-06 49.9 8.5 93 155-265 133-236 (439)
461 KOG0473 Leucine-rich repeat pr 94.0 0.003 6.5E-08 61.1 -4.8 86 520-606 38-123 (326)
462 PRK14269 phosphate ABC transpo 93.9 0.27 5.9E-06 50.7 9.2 24 178-201 28-51 (246)
463 TIGR01039 atpD ATP synthase, F 93.9 0.15 3.3E-06 56.2 7.5 87 178-266 143-249 (461)
464 TIGR01818 ntrC nitrogen regula 93.9 0.22 4.7E-06 57.0 9.3 62 156-220 135-196 (463)
465 TIGR02314 ABC_MetN D-methionin 93.9 0.18 3.9E-06 54.5 8.0 25 178-202 31-55 (343)
466 COG3598 RepA RecA-family ATPas 93.9 0.19 4.1E-06 51.6 7.5 53 180-232 91-157 (402)
467 TIGR02655 circ_KaiC circadian 93.9 0.33 7.2E-06 55.4 10.6 95 167-264 252-363 (484)
468 COG1224 TIP49 DNA helicase TIP 93.9 0.12 2.7E-06 53.7 6.2 57 153-210 37-96 (450)
469 cd02023 UMPK Uridine monophosp 93.9 0.04 8.7E-07 54.7 2.8 23 180-202 1-23 (198)
470 PRK00131 aroK shikimate kinase 93.9 0.051 1.1E-06 52.7 3.5 25 178-202 4-28 (175)
471 cd03254 ABCC_Glucan_exporter_l 93.9 0.24 5.3E-06 50.4 8.7 25 178-202 29-53 (229)
472 TIGR00554 panK_bact pantothena 93.9 0.078 1.7E-06 55.4 4.9 27 176-202 60-86 (290)
473 PRK13409 putative ATPase RIL; 93.9 0.2 4.3E-06 58.6 8.8 25 178-202 365-389 (590)
474 cd02024 NRK1 Nicotinamide ribo 93.9 0.042 9E-07 53.4 2.7 23 180-202 1-23 (187)
475 PRK10416 signal recognition pa 93.8 0.28 6E-06 52.3 9.1 26 177-202 113-138 (318)
476 KOG0473 Leucine-rich repeat pr 93.8 0.0032 7E-08 60.9 -4.8 85 544-630 38-122 (326)
477 cd02025 PanK Pantothenate kina 93.8 0.04 8.7E-07 55.5 2.7 23 180-202 1-23 (220)
478 PRK13647 cbiO cobalt transport 93.8 0.23 4.9E-06 52.2 8.5 25 178-202 31-55 (274)
479 PRK04182 cytidylate kinase; Pr 93.8 0.15 3.2E-06 49.7 6.6 43 180-230 2-44 (180)
480 PTZ00088 adenylate kinase 1; P 93.8 0.12 2.5E-06 52.3 5.9 35 181-223 9-43 (229)
481 PF03029 ATP_bind_1: Conserved 93.8 0.15 3.3E-06 51.9 6.8 20 183-202 1-20 (238)
482 KOG0927 Predicted transporter 93.8 0.31 6.8E-06 53.7 9.3 26 177-202 415-440 (614)
483 cd03282 ABC_MSH4_euk MutS4 hom 93.8 0.045 9.8E-07 54.3 2.9 117 177-299 28-158 (204)
484 COG0467 RAD55 RecA-superfamily 93.8 0.11 2.3E-06 54.2 5.8 48 176-226 21-68 (260)
485 COG3854 SpoIIIAA ncharacterize 93.8 0.29 6.2E-06 47.9 8.0 116 167-294 128-255 (308)
486 TIGR02902 spore_lonB ATP-depen 93.7 0.13 2.8E-06 59.2 7.0 44 156-201 66-109 (531)
487 KOG0062 ATPase component of AB 93.7 0.11 2.3E-06 56.8 5.8 125 178-307 106-270 (582)
488 PRK14531 adenylate kinase; Pro 93.7 0.17 3.6E-06 49.5 6.8 24 179-202 3-26 (183)
489 TIGR02322 phosphon_PhnN phosph 93.7 0.055 1.2E-06 52.8 3.3 24 179-202 2-25 (179)
490 cd03287 ABC_MSH3_euk MutS3 hom 93.7 0.064 1.4E-06 53.9 3.8 119 177-298 30-160 (222)
491 TIGR02030 BchI-ChlI magnesium 93.7 0.098 2.1E-06 56.1 5.4 45 156-202 5-49 (337)
492 PF00625 Guanylate_kin: Guanyl 93.7 0.084 1.8E-06 51.7 4.6 36 178-216 2-37 (183)
493 PRK13546 teichoic acids export 93.7 0.31 6.8E-06 50.7 9.1 26 177-202 49-74 (264)
494 PRK06936 type III secretion sy 93.7 0.22 4.8E-06 54.8 8.1 85 177-266 161-264 (439)
495 PRK11153 metN DL-methionine tr 93.6 0.22 4.7E-06 54.1 8.1 25 178-202 31-55 (343)
496 KOG1532 GTPase XAB1, interacts 93.6 0.07 1.5E-06 53.2 3.8 27 176-202 17-43 (366)
497 TIGR03575 selen_PSTK_euk L-ser 93.6 0.18 3.9E-06 53.9 7.3 22 181-202 2-23 (340)
498 cd03289 ABCC_CFTR2 The CFTR su 93.6 0.32 6.9E-06 50.9 9.1 26 177-202 29-54 (275)
499 PLN03186 DNA repair protein RA 93.6 0.46 9.9E-06 51.1 10.4 56 176-231 121-184 (342)
500 COG0563 Adk Adenylate kinase a 93.6 0.053 1.1E-06 52.4 3.0 23 180-202 2-24 (178)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-100 Score=889.88 Aligned_cols=831 Identities=39% Similarity=0.668 Sum_probs=695.5
Q ss_pred HHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 046470 13 LFDRTLNCVGEQAKYIWGLEKNLGGLETEFHKLTRTRDDLRTRVEVDEQAPRTRRTNQVVGWLEDVQKLETEFTELQQLR 92 (888)
Q Consensus 13 ~~~~l~~~~~~e~~~~~~~~~~i~~l~~el~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~~Wl~~v~~~~~~~ed~~d~~ 92 (888)
.++++++.+.+++..+.++++.+..+++++..|+++++|+++ ++ .....+..|.+.+++++|+++|+++.|
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a-------~~--~~~~~~~~~~e~~~~~~~~~e~~~~~~ 78 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDA-------KR--DDLERRVNWEEDVGDLVYLAEDIIWLF 78 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------hc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999999999999644 32 345668899999999999999999988
Q ss_pred Hhhhc----------------cccccCCCCcccccccchHHHHHHHHHHHHHHHhcCccchhhhc-cCCCCccccCCCCC
Q 046470 93 AQEMD----------------RLCLGGLFSRDLVSSYNFGRKVVELTDQVTNLKKDGEELEVLVE-ITPDGAAIELPVDH 155 (888)
Q Consensus 93 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 155 (888)
..+.. +.|..++|+.+....|.+++++.+..++++.+..++ .|+.+.. ..+......+|..+
T Consensus 79 ~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~-~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 79 LVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKG-VFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhcccc-ceecccccccchhhcccCCCCc
Confidence 65432 223345666677777888999999999999988665 4554443 22333445555544
Q ss_pred cc-cchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec------chHHHHHHHc
Q 046470 156 TV-VGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS------TLQDDIGKRI 228 (888)
Q Consensus 156 ~~-vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~------~l~~~i~~~l 228 (888)
.. ||.+..++++++.|.+ ++..+++|+||||+||||||+.++|+...++++||.++||+|| +++++|++.+
T Consensus 158 ~~~VG~e~~~~kl~~~L~~--d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 158 ESDVGLETMLEKLWNRLME--DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERL 235 (889)
T ss_pred cccccHHHHHHHHHHHhcc--CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHh
Confidence 44 9999999999999998 4449999999999999999999999994489999999999999 8999999999
Q ss_pred CCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhhhhc-cCCc-eeEcC
Q 046470 229 GFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDVCDQ-MDAE-KVEVS 306 (888)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-~~~~-~~~l~ 306 (888)
+..+..+.....++++..|.+.|++|||+|||||||+..+|+.++.++|...+||||++|||+++||.. |++. .+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 236 GLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred ccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccc
Confidence 987666666667899999999999999999999999999999999999999999999999999999998 8877 99999
Q ss_pred CCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCChhHHHHHHHHHHhc-ccccCCchH
Q 046470 307 CLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNIGDWKRAIKKIRTS-ASKFSGMEE 385 (888)
Q Consensus 307 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~ 385 (888)
.|+.+|||.||++.++......++.++++|++++++|+|+|||++++|+.|+.+.+..+|+++.+.+.+. ..+.+++.+
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 9999999999999999886666677999999999999999999999999999999999999999999888 666677888
Q ss_pred HHHhhhhhccccchHHHHHHHhhhccCCCCccccHHHHHHHHHHcCCCcCcc-------hhHHHHHHHHHhccccccC--
Q 046470 386 KVFSRLKFSYDSLSDELRSCLLYCCLYPEDYKISKRELIDYWISEGFVDDFD-------DGWEFINDLLHACLLEEEG-- 456 (888)
Q Consensus 386 ~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~-------~~~~~l~~L~~~~ll~~~~-- 456 (888)
.++.+|++|||.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+.+ .|++|+.+|++++|++..+
T Consensus 396 ~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 396 SILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 9999999999999988999999999999999999999999999999998733 2999999999999999863
Q ss_pred --CcchhhhhHHHHHHHHHHhhhhccccceEEEcCcccccCCcccccccceEEEEecCCCccCCCCCCCCchhhhhhccC
Q 046470 457 --DDHVKMHDMIREMSLWVACTIEKEKENYLVRTGFRLTEAPAVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIAN 534 (888)
Q Consensus 457 --~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n 534 (888)
..+|+|||+||++|.+++++.+.+++++++..+.+....+....+..+|++++.+|.+..++....+++|++|.+.+|
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n 555 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRN 555 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeec
Confidence 479999999999999999999988888888777666778888899999999999999999988889999999999999
Q ss_pred C--cccccchHHhcCCcccEEEcCCC-CCcccChhhhcccCCCEEeccCCcccccCcccccCCccceeccccccccCCcc
Q 046470 535 S--IDEITDGFFQSMSSLRVLSLGSN-ALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIP 611 (888)
Q Consensus 535 ~--l~~~~~~~~~~l~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp 611 (888)
. +..++..+|..++.|++|||++| .+..+|+.|+.|.|||||+++++.|+.||.++++|++|.+|++..+..+..+|
T Consensus 556 ~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 556 SDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred chhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence 7 78889999999999999999988 78899999999999999999999999999999999999999999998766665
Q ss_pred ccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEE
Q 046470 612 HQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVV 691 (888)
Q Consensus 612 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~ 691 (888)
++...|++||+|.+...... .+...+.++.+|.+|+.+.+...+...+..+.....+.+..+.+.
T Consensus 636 -~i~~~L~~Lr~L~l~~s~~~--------------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 636 -GILLELQSLRVLRLPRSALS--------------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred -chhhhcccccEEEeeccccc--------------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh
Confidence 44667999999999865421 145678889999999999987666544455555555555555555
Q ss_pred EeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCchhhhccCcceEee
Q 046470 692 VYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLTWLVFVQNLKELEI 771 (888)
Q Consensus 692 l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L 771 (888)
+.++. ......++..+.+|+.|.|.+.+..+....+....... ..|+++..+.+.+|...+.+.|....|+|+.|.+
T Consensus 701 ~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~--~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l 777 (889)
T KOG4658|consen 701 IEGCS-KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVL--LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSL 777 (889)
T ss_pred hcccc-cceeecccccccCcceEEEEcCCCchhhcccccccchh--hhHHHHHHHHhhccccccccchhhccCcccEEEE
Confidence 53321 12333457888999999999976654444443321111 1377899999999999999999999999999999
Q ss_pred ecccccchhcccccccccccccCccCcccccccee-eccccccccccCCCCCCCCCccEEEecCCCCCCCCCCCCCcccC
Q 046470 772 SRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEAL-NIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLPLNSSSAKE 850 (888)
Q Consensus 772 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L-~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~ 850 (888)
..|..++++++......... .....|+++..+ .+.+.+.+.++......++.|+.+.+..||++..+|........
T Consensus 778 ~~~~~~e~~i~~~k~~~~l~---~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~ 854 (889)
T KOG4658|consen 778 VSCRLLEDIIPKLKALLELK---ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIV 854 (889)
T ss_pred ecccccccCCCHHHHhhhcc---cEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccccccee
Confidence 99999999876432211100 123467777777 58888888888888888999999999999999999998776522
Q ss_pred ---cceEEEchHhHHhhcccCchhhhhhc
Q 046470 851 ---RRVVIEGTKKWWEELQWEDQAAQNAF 876 (888)
Q Consensus 851 ---~l~~i~~~~~~~~~l~w~~~~~~~~~ 876 (888)
.......+.+|.+.++|+++.++..+
T Consensus 855 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 855 GCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ccccceeecCCccceeeEEehhhhhhhhc
Confidence 23334445678899999999887766
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.5e-63 Score=613.28 Aligned_cols=629 Identities=19% Similarity=0.305 Sum_probs=405.2
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----------------
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS---------------- 218 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~---------------- 218 (888)
+.+||++..++++..+|.-..++.++|+||||||+||||||+++|+.. ..+|+..+|+...
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 568999999999999987655789999999999999999999999987 6789988887421
Q ss_pred -----chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchh
Q 046470 219 -----TLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVD 293 (888)
Q Consensus 219 -----~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (888)
.++++++.++.... ..... ....+++.+++||+||||||||+..+|+.+.....+.++||+||||||+..
T Consensus 261 ~~~~~~l~~~~l~~il~~~----~~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKK----DIKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cchhHHHHHHHHHHHhCCC----CcccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 11222222221110 00010 124577889999999999999999999988776666788999999999999
Q ss_pred hhhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCChhHHHHHHHH
Q 046470 294 VCDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNIGDWKRAIKK 372 (888)
Q Consensus 294 v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~ 372 (888)
++..++.. +|+++.|+.++||+||+++||... ..+..+.+++++|+++|+|+|||++++|+.|+++ +..+|+.++++
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~ 413 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPR 413 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 99888777 999999999999999999999764 3345678999999999999999999999999984 78999999999
Q ss_pred HHhcccccCCchHHHHhhhhhccccchHH-HHHHHhhhccCCCCccccHHHHHHHHHHcCCCcCcchhHHHHHHHHHhcc
Q 046470 373 IRTSASKFSGMEEKVFSRLKFSYDSLSDE-LRSCLLYCCLYPEDYKISKRELIDYWISEGFVDDFDDGWEFINDLLHACL 451 (888)
Q Consensus 373 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~-~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~l~~L~~~~l 451 (888)
++... +..+..+|++||++|+++ .|.||+++|+|+.++.++ .+..|++.+.... +..++.|+++||
T Consensus 414 L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----~~~l~~L~~ksL 480 (1153)
T PLN03210 414 LRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----NIGLKNLVDKSL 480 (1153)
T ss_pred HHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----hhChHHHHhcCC
Confidence 87643 347999999999999875 999999999999887654 4778888776543 334899999999
Q ss_pred ccccCCcchhhhhHHHHHHHHHHhhhhc--cccceEEEc-----------------Ccc-----c----ccCCccccccc
Q 046470 452 LEEEGDDHVKMHDMIREMSLWVACTIEK--EKENYLVRT-----------------GFR-----L----TEAPAVEEWEG 503 (888)
Q Consensus 452 l~~~~~~~~~mHdlv~~~a~~~~~~~~~--~~~~~~~~~-----------------~~~-----~----~~~~~~~~~~~ 503 (888)
++.. ...+.|||++|+||+.++++... .+..++... +.. . .....+..+.+
T Consensus 481 i~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~ 559 (1153)
T PLN03210 481 IHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRN 559 (1153)
T ss_pred EEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcc
Confidence 9876 46799999999999999865321 111122111 000 0 00012334445
Q ss_pred ceEEEEe-------------------------------cCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccE
Q 046470 504 AKRISLR-------------------------------GNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRV 552 (888)
Q Consensus 504 lr~L~l~-------------------------------~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~ 552 (888)
++.|.+. ++.+..+|....+.+|+.|++.+|.+..++.. +..+++|++
T Consensus 560 L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~ 638 (1153)
T PLN03210 560 LLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRN 638 (1153)
T ss_pred ccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCE
Confidence 5555554 33333333333344455555555554444433 344555555
Q ss_pred EEcCCC-CCcccChhhhcccCCCEEeccCC-cccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCC
Q 046470 553 LSLGSN-ALSKLPSGISSLVSLHHLDLSWT-EITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCG 630 (888)
Q Consensus 553 L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~-~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 630 (888)
|+|++| .+..+| .++.+++|++|+|++| .+..+|..++++++|++|++++|..+..+|.. + ++++|++|++++|.
T Consensus 639 L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 639 IDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCS 715 (1153)
T ss_pred EECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCC
Confidence 555544 234444 3445555555555554 34445555555555555555555545555543 2 45555555555554
Q ss_pred CCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCc-------cccc
Q 046470 631 SNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPL-------FNVL 703 (888)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~-------~~~l 703 (888)
....+ . ....+|+.|+++.+....++.... ...|..|.+.++.... ....
T Consensus 716 ~L~~~-----------------p--~~~~nL~~L~L~~n~i~~lP~~~~----l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 716 RLKSF-----------------P--DISTNISWLDLDETAIEEFPSNLR----LENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred Ccccc-----------------c--cccCCcCeeecCCCcccccccccc----ccccccccccccchhhccccccccchh
Confidence 32110 0 012334444444433222211110 1223333333221100 0000
Q ss_pred cccccCCcceEEeecCC-cceeeecCCccccccccccCCCccEEEEecCCCCCCCchhhhccCcceEeeecccccchhcc
Q 046470 704 HLAYMENLQELHLEDSD-LEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLTWLVFVQNLKELEISRCHAVEDIIS 782 (888)
Q Consensus 704 ~l~~l~~L~~L~l~~~~-l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~ 782 (888)
....+++|+.|++++|. +..+ |.++ ..+++|+.|+|++|..++.+|....+++|+.|+|++|..++.++.
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~l-P~si--------~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVEL-PSSI--------QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hhhccccchheeCCCCCCcccc-Chhh--------hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 11123456666666542 2222 2222 246677777777776666666444666777777777766655433
Q ss_pred ccc-c-------cccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecCCCCCCCCCCC
Q 046470 783 VDK-L-------RDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLPLN 844 (888)
Q Consensus 783 ~~~-~-------~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP~~ 844 (888)
... . ..+.++ |..+..+++|+.|+|.+|++++.++.....+++|+.|++.+|++|+.++..
T Consensus 844 ~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 844 ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 110 0 011111 124567899999999999999999988888999999999999999987654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.2e-45 Score=387.66 Aligned_cols=277 Identities=34% Similarity=0.653 Sum_probs=228.9
Q ss_pred hHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec------chHHHHHHHcCCChh
Q 046470 160 QELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS------TLQDDIGKRIGFSEN 233 (888)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~------~l~~~i~~~l~~~~~ 233 (888)
||.++++|.+.|.+.+++.++|+|+||||+||||||++++++. ..+.+|+.++|+.++ .++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 7899999999999866789999999999999999999999986 468999999999998 678889999987643
Q ss_pred hh-cCCCHHHHHHHHHHHhccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhhhhccCC-c-eeEcCCCCh
Q 046470 234 WW-KKKSPEEKAVDISSILSRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDVCDQMDA-E-KVEVSCLAH 310 (888)
Q Consensus 234 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~-~~~l~~L~~ 310 (888)
.. ...+..+....+++.|+++++||||||||+...|+.+...++....|++||||||+..++..++. . .+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 45677889999999999999999999999999999988888877789999999999999888775 3 999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCChhHHHHHHHHHHhcccccCCchHHHHhh
Q 046470 311 DEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNIGDWKRAIKKIRTSASKFSGMEEKVFSR 390 (888)
Q Consensus 311 ~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 390 (888)
+||++||.+.++......++..++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999865523345667899999999999999999999999776678899999998888765544445789999
Q ss_pred hhhccccchHHHHHHHhhhccCCCCccccHHHHHHHHHHcCCCcCcc
Q 046470 391 LKFSYDSLSDELRSCLLYCCLYPEDYKISKRELIDYWISEGFVDDFD 437 (888)
Q Consensus 391 l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~ 437 (888)
+.+||+.||++.|.||+|||+||+++.|+++.|+++|+++||+...+
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 99999999999999999999999999999999999999999998753
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=4.1e-24 Score=225.84 Aligned_cols=328 Identities=20% Similarity=0.312 Sum_probs=227.9
Q ss_pred ceEEEcCcccccCC-cccccccceEEEEecCCCccCC-CCCCCCchhhhhhccCCc--ccccchHHhcCCcccEEEcCCC
Q 046470 483 NYLVRTGFRLTEAP-AVEEWEGAKRISLRGNRFDSLS-EIPTSPRLITLLLIANSI--DEITDGFFQSMSSLRVLSLGSN 558 (888)
Q Consensus 483 ~~~~~~~~~~~~~~-~~~~~~~lr~L~l~~n~~~~l~-~~~~~~~Lr~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~~ 558 (888)
.++..+...+..+| .+..+.++.+|++.+|++..+. .++.++.||++.+..|++ +++|++ +-.+..|.+||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh
Confidence 34444443444443 3556788999999999987764 578899999999999985 477888 457999999999999
Q ss_pred CCcccChhhhcccCCCEEeccCCcccccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccc
Q 046470 559 ALSKLPSGISSLVSLHHLDLSWTEITGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVT 637 (888)
Q Consensus 559 ~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 637 (888)
++++.|..+..-+++-.|+||+|+|..+|.. +-+|+.|-+|||++|. +..+|+. +.+|.+|++|.+++|....
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~h---- 187 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNH---- 187 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhH----
Confidence 9999999999999999999999999999987 5689999999999995 4889988 8999999999999987653
Q ss_pred cccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEee
Q 046470 638 EEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLE 717 (888)
Q Consensus 638 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~ 717 (888)
.-+..|+++++|+.|.++...- .+..+.....-..+|+.++++.++.+.. +..+-.+++|+.|+++
T Consensus 188 ------------fQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 188 ------------FQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLS 253 (1255)
T ss_pred ------------HHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccC
Confidence 2456677777788888775432 2222332222234566666665543211 1225567888888888
Q ss_pred cCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccc-cchhccc-cc---------
Q 046470 718 DSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHA-VEDIISV-DK--------- 785 (888)
Q Consensus 718 ~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~-l~~l~~~-~~--------- 785 (888)
+|.++++.... ..-.+|++|+++.| +++.+| .+..++.|+.|.+.++.. .+.+|.. ..
T Consensus 254 ~N~iteL~~~~---------~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 254 GNKITELNMTE---------GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred cCceeeeeccH---------HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 88888664332 12456666666666 455554 455666666666555321 1111110 00
Q ss_pred ccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecCCCCCCCCC
Q 046470 786 LRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLP 842 (888)
Q Consensus 786 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP 842 (888)
.....+..|..+..+++|+.|.|+.+ .|-.+|....-+|.|+.|+++..|+|.--|
T Consensus 324 anN~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 324 ANNKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hccccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 00111222246777888888888766 577788777778888899998888887543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.1e-21 Score=244.77 Aligned_cols=316 Identities=20% Similarity=0.180 Sum_probs=191.1
Q ss_pred ccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCc-ccChhhhcccCCCEEec
Q 046470 500 EWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALS-KLPSGISSLVSLHHLDL 578 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L 578 (888)
.++++++|++++|.+........+++|++|++++|.+....+..++.+++|++|+|++|.+. .+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45667777777766654333345667777777777766544445777777777777777665 56777777777777777
Q ss_pred cCCcccc-cCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhc
Q 046470 579 SWTEITG-LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLG 657 (888)
Q Consensus 579 ~~~~i~~-Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 657 (888)
++|.+.. +|..++++++|++|++++|.+...+|.. ++++++|++|++++|.... ..+..+.+
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~----------------~~p~~l~~ 258 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG----------------PIPSSLGN 258 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc----------------ccChhHhC
Confidence 7776654 6777777777777777777665566665 6777777777777765431 13345666
Q ss_pred CCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCcccccccc
Q 046470 658 LKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQ 737 (888)
Q Consensus 658 L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~ 737 (888)
+++|+.|+++.+..... ..........|+.|+++++......+..+..+++|+.|++++|.+....+..+.
T Consensus 259 l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~------- 329 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT------- 329 (968)
T ss_pred CCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh-------
Confidence 77777777766543211 000011124567777776654333333356677777777777766543333332
Q ss_pred ccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccc-ccc----------ccccccCccCccccccce
Q 046470 738 SGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVD-KLR----------DISEIIGSEHNFFAQLEA 805 (888)
Q Consensus 738 ~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~-~~~----------~~~~~~~~~~~~~p~L~~ 805 (888)
.+++|+.|+|++|.....+| .++.+++|+.|++++|.....++..- ... .+....+..+..+++|+.
T Consensus 330 -~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 330 -SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred -cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 46778888888775443444 56777788888887765322222100 000 000111123456777888
Q ss_pred eeccccccccccCCCCCCCCCccEEEecCCCCCCCCC
Q 046470 806 LNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLP 842 (888)
Q Consensus 806 L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP 842 (888)
|.+++|.-...++.....+++|+.|++.+|.--..+|
T Consensus 409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 445 (968)
T PLN00113 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445 (968)
T ss_pred EECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC
Confidence 8887775444455555567888888887765333333
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.3e-22 Score=211.79 Aligned_cols=313 Identities=22% Similarity=0.281 Sum_probs=170.2
Q ss_pred cccCCcccccc-cceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-Chhh
Q 046470 492 LTEAPAVEEWE-GAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGI 567 (888)
Q Consensus 492 ~~~~~~~~~~~-~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i 567 (888)
+..+|.+.... ++..|++.+|.|.++. .+.-++.||+|+|+.|.++.++...|..-.++++|+|++|.|+.+ ...|
T Consensus 114 Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 114 LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc
Confidence 33444443322 3555555555555543 234455556666666665555555555555566666666666555 3345
Q ss_pred hcccCCCEEeccCCcccccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCccccc
Q 046470 568 SSLVSLHHLDLSWTEITGLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCD 646 (888)
Q Consensus 568 ~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 646 (888)
..+.+|-+|.|+.|+|+.||. .|.+|++|+.|+|..|.+ ..+-.-.+.+|++|+.|.+..|.+...
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL------------ 260 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKL------------ 260 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcccc------------
Confidence 555556666666666666543 344466666666655543 322111255566666665555544321
Q ss_pred chhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeee
Q 046470 647 DAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRI 726 (888)
Q Consensus 647 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~ 726 (888)
.-+.+-.|.+++.|++..|....+..-.-+ ..+.|+.|+++.+....+.....+.+++|+.|+++.|.++.++.
T Consensus 261 ----~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 261 ----DDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred ----cCcceeeecccceeecccchhhhhhccccc--ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 111233445555666665554433221100 11345555565555544444444555666666666666665544
Q ss_pred cCCccccccccccCCCccEEEEecCCCCCCCc--hhhhccCcceEeeecccccchhcccccccccccccCccCccccccc
Q 046470 727 DGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT--WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLE 804 (888)
Q Consensus 727 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~ 804 (888)
..+. .+..|+.|.|+.| .++.+. .+..+.+|++|+|+.+. +.-.+.. ....+.++|+|+
T Consensus 335 ~sf~--------~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IED---------aa~~f~gl~~Lr 395 (873)
T KOG4194|consen 335 GSFR--------VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED---------AAVAFNGLPSLR 395 (873)
T ss_pred hHHH--------HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec---------chhhhccchhhh
Confidence 4433 3556666666666 344443 34456677777776633 3222210 013567799999
Q ss_pred eeeccccccccccCCC-CCCCCCccEEEecCCCCCCCCCCC
Q 046470 805 ALNIFNNVNLKSIYPN-PLPFPKLKKIQIYSCPELKKLPLN 844 (888)
Q Consensus 805 ~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lP~~ 844 (888)
.|.|.++ ++++|+.. ...+++|+.|++.+.+ +.++-+.
T Consensus 396 kL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~n 434 (873)
T KOG4194|consen 396 KLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASIQPN 434 (873)
T ss_pred heeecCc-eeeecchhhhccCcccceecCCCCc-ceeeccc
Confidence 9999998 79999864 4458999999998865 4444333
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=7.9e-21 Score=237.24 Aligned_cols=314 Identities=21% Similarity=0.224 Sum_probs=158.6
Q ss_pred ccccccceEEEEecCCCcc-CC-CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCc-ccChhhhcccCCC
Q 046470 498 VEEWEGAKRISLRGNRFDS-LS-EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALS-KLPSGISSLVSLH 574 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~-l~-~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~ 574 (888)
+..+.+++.|++++|.+.. +| .+.++++|++|++++|.+....+..+.++++|++|+|++|.+. .+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 3445566666666665532 22 2455566666666666655444444566666666666666555 4566666666666
Q ss_pred EEeccCCcccc-cCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHH
Q 046470 575 HLDLSWTEITG-LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMK 653 (888)
Q Consensus 575 ~L~L~~~~i~~-Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (888)
+|++++|.++. +|..++++++|++|++++|.+...+|.. +.++++|++|++++|.... ..+.
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~----------------~~p~ 302 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSG----------------EIPE 302 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeecc----------------CCCh
Confidence 66666665543 5666666666666666666554455544 5566666666666554431 1223
Q ss_pred HhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCcccc
Q 046470 654 ELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVK 733 (888)
Q Consensus 654 ~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~ 733 (888)
.+.++++|+.|+++.+...... .......+.|+.|.+.++......+..+..+++|+.|++++|.+....+.++....
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcC--ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 4455666666666554432110 00011123556666665554333233355566666666666655433333222000
Q ss_pred --------------ccc--cccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccccccccccccCcc
Q 046470 734 --------------KLF--QSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSE 796 (888)
Q Consensus 734 --------------~~~--~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~ 796 (888)
..+ ...+++|+.|++++|.....+| .+..+++|+.|++++|. +...+. ..
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~ 447 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRIN------------SR 447 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccC------------hh
Confidence 000 0124444455544443222222 34444555555555433 222111 13
Q ss_pred CccccccceeeccccccccccCCCCCCCCCccEEEecCCCCCCCCCCC
Q 046470 797 HNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLPLN 844 (888)
Q Consensus 797 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP~~ 844 (888)
...+++|+.|++++|.-...++. ....++|+.|++.+|.-...+|..
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~-~~~~~~L~~L~ls~n~l~~~~~~~ 494 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRK 494 (968)
T ss_pred hccCCCCcEEECcCceeeeecCc-ccccccceEEECcCCccCCccChh
Confidence 34567777777777654433332 223467777777776544445543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=5e-23 Score=217.66 Aligned_cols=289 Identities=18% Similarity=0.211 Sum_probs=207.4
Q ss_pred CcccccccceEEEEecCCCccCCC-CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCC
Q 046470 496 PAVEEWEGAKRISLRGNRFDSLSE-IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLH 574 (888)
Q Consensus 496 ~~~~~~~~lr~L~l~~n~~~~l~~-~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~ 574 (888)
+.+..++.+..|+++.|++.+.|. +...+++-+|+|++|+|..+|...|-++..|-+||||+|.+..+|+.+..|.+|+
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 455667888889999998888774 6677888889999999988988888888899999999999999988999999999
Q ss_pred EEeccCCccccc-CcccccCCccceeccccccc-cCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHH
Q 046470 575 HLDLSWTEITGL-PQELKALEKLRYLNLEHAYM-LSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLM 652 (888)
Q Consensus 575 ~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~~~~-l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (888)
+|+|++|.+... -..+..+++|++|.+++++. +..+|.. +..|.||+.++++.|.... .+
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~-----------------vP 238 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPI-----------------VP 238 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCc-----------------ch
Confidence 999998865431 12234577888888888764 3567776 8888899999988776542 45
Q ss_pred HHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccc
Q 046470 653 KELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEV 732 (888)
Q Consensus 653 ~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~ 732 (888)
..+-++.+|+.|+++.|.+..+.. .......+++|+++.+....+ +..+..++.|+.|.+.+|.+. .+.++
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~---~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~---FeGiP-- 309 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNM---TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLT---FEGIP-- 309 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeec---cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCccc---ccCCc--
Confidence 566778888888888776544321 112223566677666543222 123667788888888887765 22222
Q ss_pred cccccccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeecccc
Q 046470 733 KKLFQSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNN 811 (888)
Q Consensus 733 ~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 811 (888)
.....+.+|+.+...+| .+.-+| .+..|+.|+.|.|+.+ .+-++|. .+..+|.|+.|++.++
T Consensus 310 --SGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N-rLiTLPe-------------aIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 310 --SGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN-RLITLPE-------------AIHLLPDLKVLDLREN 372 (1255)
T ss_pred --cchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc-ceeechh-------------hhhhcCCcceeeccCC
Confidence 11235778888888887 566655 6888999999999864 4555554 6778999999999999
Q ss_pred ccccccCCCCCCCCCcc
Q 046470 812 VNLKSIYPNPLPFPKLK 828 (888)
Q Consensus 812 ~~L~~i~~~~~~~p~L~ 828 (888)
|+|-.-|....+-.+|+
T Consensus 373 pnLVMPPKP~da~~~le 389 (1255)
T KOG0444|consen 373 PNLVMPPKPNDARKKLE 389 (1255)
T ss_pred cCccCCCCcchhhhcce
Confidence 99977665333333443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.7e-22 Score=211.21 Aligned_cols=296 Identities=21% Similarity=0.281 Sum_probs=234.0
Q ss_pred cccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCC
Q 046470 497 AVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSL 573 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L 573 (888)
.+..+..+|.++++.|.+.+++ .++.-.+++.|+|++|.++.+..+.|.++.+|..|.|+.|.|+.+|.. |.+|++|
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 3455678999999999998875 467778899999999999999888899999999999999999999754 5569999
Q ss_pred CEEeccCCccccc-CcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHH
Q 046470 574 HHLDLSWTEITGL-PQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLM 652 (888)
Q Consensus 574 ~~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (888)
+.|+|..|.|... --.|.+|.+|+.|.+..|.+ ..+.++++..|.++++|++..|..... .-
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I-~kL~DG~Fy~l~kme~l~L~~N~l~~v----------------n~ 286 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI-SKLDDGAFYGLEKMEHLNLETNRLQAV----------------NE 286 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCc-ccccCcceeeecccceeecccchhhhh----------------hc
Confidence 9999999988775 55789999999999999976 778888899999999999998876532 33
Q ss_pred HHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccc
Q 046470 653 KELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEV 732 (888)
Q Consensus 653 ~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~ 732 (888)
+.|-+|+.|+.|+++.|.+..+.. ..-+++..|+.|+++.+.....+..++..+..|++|.+++|.+..+.-..+.
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~--d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~-- 362 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHI--DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV-- 362 (873)
T ss_pred ccccccchhhhhccchhhhheeec--chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH--
Confidence 456678889999999887654431 2223456899999999998888888888999999999999988865443332
Q ss_pred cccccccCCCccEEEEecCCCCCCC----chhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeec
Q 046470 733 KKLFQSGFRSLSIVSVENCEKMKDL----TWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNI 808 (888)
Q Consensus 733 ~~~~~~~l~~L~~L~L~~c~~l~~l----~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L 808 (888)
.+.+|++|+|++|...-.+ ..+..+++|+.|.+.+ ++++.++. ..+.+|++|++|+|
T Consensus 363 ------~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k------------rAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 363 ------GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK------------RAFSGLEALEHLDL 423 (873)
T ss_pred ------HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecch------------hhhccCcccceecC
Confidence 5789999999887421111 1356799999999999 56888876 47788999999999
Q ss_pred cccccccccCCCCCCCCCccEEEec
Q 046470 809 FNNVNLKSIYPNPLPFPKLKKIQIY 833 (888)
Q Consensus 809 ~~~~~L~~i~~~~~~~p~L~~L~i~ 833 (888)
.+++ +.+|....+.--.|++|.+.
T Consensus 424 ~~Na-iaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 424 GDNA-IASIQPNAFEPMELKELVMN 447 (873)
T ss_pred CCCc-ceeecccccccchhhhhhhc
Confidence 9884 66665544432367777665
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=3.5e-19 Score=222.20 Aligned_cols=340 Identities=19% Similarity=0.233 Sum_probs=208.8
Q ss_pred HHHHHHHHHHhhhhccccceEEEcCcccccC---------CcccccccceEEEEecCCCccCC----CCCCCCchhhhhh
Q 046470 465 MIREMSLWVACTIEKEKENYLVRTGFRLTEA---------PAVEEWEGAKRISLRGNRFDSLS----EIPTSPRLITLLL 531 (888)
Q Consensus 465 lv~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~lr~L~l~~n~~~~l~----~~~~~~~Lr~L~l 531 (888)
-+|++.+..+++....+.. ..+.+...+ ....+..+++.+++..+.+..+. .+..+++|+.|.+
T Consensus 489 ~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~ 565 (1153)
T PLN03210 489 EMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565 (1153)
T ss_pred EhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence 3578888877775543321 112111111 01223356777777655554321 3567788888877
Q ss_pred ccCCc-------ccccchHHhcC-CcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecccc
Q 046470 532 IANSI-------DEITDGFFQSM-SSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEH 603 (888)
Q Consensus 532 ~~n~l-------~~~~~~~~~~l-~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 603 (888)
..+.. -.+|.+ |..+ ..|+.|++.++.++.+|..+ .+.+|+.|++++|.+..+|.++..+++|+.|++++
T Consensus 566 ~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 566 YTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred ecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence 65431 123444 3333 45888888888888887766 46788888888888877887777888888888887
Q ss_pred ccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCcc
Q 046470 604 AYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKL 683 (888)
Q Consensus 604 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l 683 (888)
|..+..+|. ++.+++|++|++.+|..... .+..+.++++|+.|+++.+.. +..+.... .
T Consensus 644 ~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~----------------lp~si~~L~~L~~L~L~~c~~--L~~Lp~~i-~ 702 (1153)
T PLN03210 644 SKNLKEIPD--LSMATNLETLKLSDCSSLVE----------------LPSSIQYLNKLEDLDMSRCEN--LEILPTGI-N 702 (1153)
T ss_pred CCCcCcCCc--cccCCcccEEEecCCCCccc----------------cchhhhccCCCCEEeCCCCCC--cCccCCcC-C
Confidence 766677775 67788888888877765421 234556677777777765431 11111111 2
Q ss_pred ccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecC---------------------CccccccccccCCC
Q 046470 684 VSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDG---------------------PEEVKKLFQSGFRS 742 (888)
Q Consensus 684 ~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~---------------------~~~~~~~~~~~l~~ 742 (888)
.+.|+.|.+.+|.. ...+. ...++|+.|+++++.+..++... ...........+++
T Consensus 703 l~sL~~L~Lsgc~~--L~~~p-~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 703 LKSLYRLNLSGCSR--LKSFP-DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCCEEeCCCCCC--ccccc-cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 34566666666543 11111 11245666666665544432110 00000011123578
Q ss_pred ccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeecccccc--------
Q 046470 743 LSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVN-------- 813 (888)
Q Consensus 743 L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~-------- 813 (888)
|+.|+|++|+.+..+| .++.+++|+.|+|++|+.++.+|... .+++|+.|+|++|.+
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--------------~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--------------NLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--------------CccccCEEECCCCCccccccccc
Confidence 9999999998888776 68899999999999999998876521 344455555554443
Q ss_pred ------------ccccCCCCCCCCCccEEEecCCCCCCCCCCCCCc
Q 046470 814 ------------LKSIYPNPLPFPKLKKIQIYSCPELKKLPLNSSS 847 (888)
Q Consensus 814 ------------L~~i~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~ 847 (888)
++.+|.....+++|+.|++.+|++|+.+|.....
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence 4445555566899999999999999999987654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=3.1e-20 Score=187.63 Aligned_cols=313 Identities=25% Similarity=0.302 Sum_probs=197.0
Q ss_pred cCCcccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCC
Q 046470 494 EAPAVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSL 573 (888)
Q Consensus 494 ~~~~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L 573 (888)
.++.+..+.++..|+++.|.+..+|+|+.|+.|..|.+..|.++.+|......+.+|.+|||+.|+++++|+.++.+.+|
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL 277 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSL 277 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhh
Confidence 34667788899999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CEEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCC--CcEEec--cCCCCCCcccccccCcccccchh
Q 046470 574 HHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSK--LEVLRL--LGCGSNCVTVTEEEGNVLCDDAG 649 (888)
Q Consensus 574 ~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~--L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~ 649 (888)
.+||+|+|.|+.+|.+++++ +|+.|-+.||.. ..+-..++.+=+. |++|.- ..-+...+ +......++...
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~s---e~~~e~~~t~~~ 352 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQS---EGGTETAMTLPS 352 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCC---cccccccCCCCC
Confidence 99999999999999999999 999999999965 4444443322111 222211 00011000 000000000011
Q ss_pred hHHHHhhcCCCCceEEEEEechhhHHh-hhcCCccccceEEEEEeecCC-----------------------Cccccccc
Q 046470 650 LLMKELLGLKHLNFLSWSFRSSLAVQK-FFKYPKLVSITQSVVVYQCEC-----------------------PLFNVLHL 705 (888)
Q Consensus 650 ~~~~~L~~L~~L~~L~l~~~~~~~~~~-~~~~~~l~~~L~~L~l~~~~~-----------------------~~~~~l~l 705 (888)
......-.+.+.+.|+++......++. ++...+ .......+++.+.. .+.....+
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~-~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK-SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHhh-hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 111222223344444444332222111 111100 01122333333221 11112224
Q ss_pred cccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccc
Q 046470 706 AYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVD 784 (888)
Q Consensus 706 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~ 784 (888)
+.+++|..|++++|-+.+++.+.. .+..|+.|+|+.| ....+| ++..+..|+.+-.++ +.+..++.
T Consensus 432 ~~l~kLt~L~L~NN~Ln~LP~e~~---------~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~-- 498 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLNDLPEEMG---------SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDP-- 498 (565)
T ss_pred Hhhhcceeeecccchhhhcchhhh---------hhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccCh--
Confidence 555666666666666665544432 2555666666666 344444 233333344443333 44555543
Q ss_pred cccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecCCC
Q 046470 785 KLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCP 836 (888)
Q Consensus 785 ~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 836 (888)
+....+.+|.+|+|.++ .+..+|...+.|.+|++|.+.|.|
T Consensus 499 ----------~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 ----------SGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ----------HHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 45778999999999987 699999999999999999999976
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=6.2e-18 Score=188.37 Aligned_cols=210 Identities=19% Similarity=0.233 Sum_probs=115.3
Q ss_pred CccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhh
Q 046470 594 EKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLA 673 (888)
Q Consensus 594 ~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 673 (888)
.+|++++++++++ ..+|. .++.+.+|+.|+..+|.... .+.++..+++|+.|.+..+....
T Consensus 241 ~nl~~~dis~n~l-~~lp~-wi~~~~nle~l~~n~N~l~~-----------------lp~ri~~~~~L~~l~~~~nel~y 301 (1081)
T KOG0618|consen 241 LNLQYLDISHNNL-SNLPE-WIGACANLEALNANHNRLVA-----------------LPLRISRITSLVSLSAAYNELEY 301 (1081)
T ss_pred ccceeeecchhhh-hcchH-HHHhcccceEecccchhHHh-----------------hHHHHhhhhhHHHHHhhhhhhhh
Confidence 3566666777654 67784 48889999999988876642 23333334444444443333322
Q ss_pred HHhhhcCCccccceEEEEEeecCCCcccccc-------------------------ccccCCcceEEeecCCcceeeecC
Q 046470 674 VQKFFKYPKLVSITQSVVVYQCECPLFNVLH-------------------------LAYMENLQELHLEDSDLEEMRIDG 728 (888)
Q Consensus 674 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~-------------------------l~~l~~L~~L~l~~~~l~~l~~~~ 728 (888)
++.+.. -.+++++|++..+......... -..++.|+.|++.+|.+++-..
T Consensus 302 ip~~le---~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~-- 376 (1081)
T KOG0618|consen 302 IPPFLE---GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF-- 376 (1081)
T ss_pred CCCccc---ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch--
Confidence 222111 1124444444443322221111 1123445555555555553211
Q ss_pred CccccccccccCCCccEEEEecCCCCCCCc--hhhhccCcceEeeecccccchhccccc-ccccc---------cccCcc
Q 046470 729 PEEVKKLFQSGFRSLSIVSVENCEKMKDLT--WLVFVQNLKELEISRCHAVEDIISVDK-LRDIS---------EIIGSE 796 (888)
Q Consensus 729 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~-~~~~~---------~~~~~~ 796 (888)
+...++.+|+.|+|++| .+..+| .+.+++.|++|+|++ +.++.++..-. +..+. ... ..
T Consensus 377 ------p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~f-Pe 447 (1081)
T KOG0618|consen 377 ------PVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSF-PE 447 (1081)
T ss_pred ------hhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeec-hh
Confidence 12236788888888888 566665 477888888888888 45777764110 01100 111 14
Q ss_pred CccccccceeeccccccccccCCCCCC-CCCccEEEecCCCC
Q 046470 797 HNFFAQLEALNIFNNVNLKSIYPNPLP-FPKLKKIQIYSCPE 837 (888)
Q Consensus 797 ~~~~p~L~~L~L~~~~~L~~i~~~~~~-~p~L~~L~i~~C~~ 837 (888)
+..+|.|+.++++.+ +|+.+...... .|+|++|+++|.+.
T Consensus 448 ~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 556778888888765 56665443322 37888888888775
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=3.7e-18 Score=172.74 Aligned_cols=260 Identities=21% Similarity=0.297 Sum_probs=134.5
Q ss_pred CchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecccc
Q 046470 524 PRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEH 603 (888)
Q Consensus 524 ~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 603 (888)
..|..|.++.|.+..+.++ +.++..|.+|++++|.+..+|..++.+..++.|+.++|+++++|+.++.+.+|.+|+.++
T Consensus 45 v~l~~lils~N~l~~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 3455666666666555554 566666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCcc
Q 046470 604 AYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKL 683 (888)
Q Consensus 604 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l 683 (888)
|.. ..+|++ ++.+..|+.|+..+|.+.. .+..+.++.+|..+.+..+....+.+-.- .
T Consensus 124 n~~-~el~~~-i~~~~~l~dl~~~~N~i~s-----------------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i---~ 181 (565)
T KOG0472|consen 124 NEL-KELPDS-IGRLLDLEDLDATNNQISS-----------------LPEDMVNLSKLSKLDLEGNKLKALPENHI---A 181 (565)
T ss_pred cce-eecCch-HHHHhhhhhhhcccccccc-----------------CchHHHHHHHHHHhhccccchhhCCHHHH---H
Confidence 654 445554 6666666666666555442 22333333334444444333222111000 0
Q ss_pred ccceEEEEEeecCCCcccc--ccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc--h
Q 046470 684 VSITQSVVVYQCECPLFNV--LHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT--W 759 (888)
Q Consensus 684 ~~~L~~L~l~~~~~~~~~~--l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~ 759 (888)
...+++++... ..... ..++++.+|..|++..|.+..++ .++ ++..|++|++..| .++.+| .
T Consensus 182 m~~L~~ld~~~---N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~--------gcs~L~Elh~g~N-~i~~lpae~ 247 (565)
T KOG0472|consen 182 MKRLKHLDCNS---NLLETLPPELGGLESLELLYLRRNKIRFLP--EFP--------GCSLLKELHVGEN-QIEMLPAEH 247 (565)
T ss_pred HHHHHhcccch---hhhhcCChhhcchhhhHHHHhhhcccccCC--CCC--------ccHHHHHHHhccc-HHHhhHHHH
Confidence 01111111110 00111 12455555555555555555432 221 3555566665555 344443 2
Q ss_pred hhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecCCC
Q 046470 760 LVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCP 836 (888)
Q Consensus 760 l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 836 (888)
+.++++|..|++.+ +.++++|. ....+.+|+.|+++++ .+..++...+.+ .|+.|.+.|.|
T Consensus 248 ~~~L~~l~vLDLRd-Nklke~Pd-------------e~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRD-NKLKEVPD-------------EICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hcccccceeeeccc-cccccCch-------------HHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 33556666666665 33555544 3445555666666655 355555555555 55555555554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=2.5e-15 Score=173.81 Aligned_cols=254 Identities=20% Similarity=0.169 Sum_probs=165.0
Q ss_pred cceEEEcCcccccCCcccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCc
Q 046470 482 ENYLVRTGFRLTEAPAVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALS 561 (888)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~ 561 (888)
...+......+..+|.. -..+++.|++.+|+++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|.++
T Consensus 203 ~~~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 203 NAVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLT 275 (788)
T ss_pred CcEEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchh
Confidence 33343333344444431 124788888888888887754 47888888888888877642 467888888888888
Q ss_pred ccChhhhcccCCCEEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccC
Q 046470 562 KLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEG 641 (888)
Q Consensus 562 ~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 641 (888)
.+|.. ..+|+.|++++|+++.+|.. +++|++|++++|++ ..+|.. . .+|+.|++.+|.....
T Consensus 276 ~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l-p---~~L~~L~Ls~N~L~~L------- 337 (788)
T PRK15387 276 HLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL-P---SELCKLWAYNNQLTSL------- 337 (788)
T ss_pred hhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC-c---ccccccccccCccccc-------
Confidence 87753 35677888888888888763 46788888888865 556652 2 3577777777665421
Q ss_pred cccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCc
Q 046470 642 NVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDL 721 (888)
Q Consensus 642 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l 721 (888)
..+ ..+|+.|+++.|....++. ....+..|.+.++....+.. .+.+|+.|++++|.+
T Consensus 338 -----------P~l--p~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~L 394 (788)
T PRK15387 338 -----------PTL--PSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRL 394 (788)
T ss_pred -----------ccc--ccccceEecCCCccCCCCC------CCcccceehhhccccccCcc----cccccceEEecCCcc
Confidence 011 1367788887776554332 22456666666654432221 125688888888777
Q ss_pred ceeeecCCccccccccccCCCccEEEEecCCCCCCCchhhhccCcceEeeecccccchhcccccccccccccCccCcccc
Q 046470 722 EEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLTWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFA 801 (888)
Q Consensus 722 ~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p 801 (888)
..++. ..++|+.|++++| .++.+|.+ +.+|+.|++++| .++.+|. .+..++
T Consensus 395 t~LP~------------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~LP~-------------sl~~L~ 445 (788)
T PRK15387 395 TSLPV------------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRLPE-------------SLIHLS 445 (788)
T ss_pred cCCCC------------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-cccccCh-------------HHhhcc
Confidence 64321 1357888888887 45666532 346778888874 4666654 455678
Q ss_pred ccceeeccccc
Q 046470 802 QLEALNIFNNV 812 (888)
Q Consensus 802 ~L~~L~L~~~~ 812 (888)
+|+.|+|++|+
T Consensus 446 ~L~~LdLs~N~ 456 (788)
T PRK15387 446 SETTVNLEGNP 456 (788)
T ss_pred CCCeEECCCCC
Confidence 88888888874
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=4.1e-16 Score=139.82 Aligned_cols=161 Identities=27% Similarity=0.403 Sum_probs=137.8
Q ss_pred ccCCcccccccceEEEEecCCCccCC-CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhccc
Q 046470 493 TEAPAVEEWEGAKRISLRGNRFDSLS-EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLV 571 (888)
Q Consensus 493 ~~~~~~~~~~~lr~L~l~~n~~~~l~-~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~ 571 (888)
.+++.+..++++++|.+++|.++.+| .+..+.+|++|++++|+++.+|.+ ++.++.||.|++.-|.+..+|.+||.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCc
Confidence 44566677788999999999998775 578899999999999999999887 8899999999999999999999999999
Q ss_pred CCCEEeccCCcccc--cCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchh
Q 046470 572 SLHHLDLSWTEITG--LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAG 649 (888)
Q Consensus 572 ~L~~L~L~~~~i~~--Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 649 (888)
.|+.|||.+|++.+ +|..+-.++.|+.|+++.|.+ +.+|.+ +++|++||.|.+.+|....
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll~---------------- 164 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLLS---------------- 164 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchhh----------------
Confidence 99999999998876 899999999999999999976 888887 8999999999998876652
Q ss_pred hHHHHhhcCCCCceEEEEEechhh
Q 046470 650 LLMKELLGLKHLNFLSWSFRSSLA 673 (888)
Q Consensus 650 ~~~~~L~~L~~L~~L~l~~~~~~~ 673 (888)
.+.+++.|..|+.|++..+....
T Consensus 165 -lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 165 -LPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred -CcHHHHHHHHHHHHhcccceeee
Confidence 45677778888888887665443
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=8.7e-16 Score=137.76 Aligned_cols=167 Identities=23% Similarity=0.345 Sum_probs=138.4
Q ss_pred CccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccC
Q 046470 514 FDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKAL 593 (888)
Q Consensus 514 ~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L 593 (888)
+.+++.+..++++..|.++.|+++.+|+. +..+++|++|++++|+|+.+|.+++.++.|+.|+++-|++..+|.+++.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 34456677888999999999999999988 88999999999999999999999999999999999999999999999999
Q ss_pred CccceeccccccccC-CccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechh
Q 046470 594 EKLRYLNLEHAYMLS-IIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSL 672 (888)
Q Consensus 594 ~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 672 (888)
+-|+.||+++|+..+ .+|.. +-.|+.|+.|++++|.+.. .+.+.++|++|+.|.+..++..
T Consensus 102 p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe~-----------------lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEI-----------------LPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred chhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCccc-----------------CChhhhhhcceeEEeeccCchh
Confidence 999999999997655 45655 7789999999999876642 4567788888888888766543
Q ss_pred hHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeee
Q 046470 673 AVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRI 726 (888)
Q Consensus 673 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~ 726 (888)
+++. .++.+..|++|+|.+|.+..+++
T Consensus 164 ~lpk---------------------------eig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 164 SLPK---------------------------EIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred hCcH---------------------------HHHHHHHHHHHhcccceeeecCh
Confidence 3221 15566788889999988876644
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=4.7e-14 Score=164.49 Aligned_cols=248 Identities=17% Similarity=0.218 Sum_probs=148.9
Q ss_pred cceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCc
Q 046470 503 GAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTE 582 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 582 (888)
+...|++.++.++.+|.. -.++|+.|++++|.++.+|...+ .+|++|++++|.++.+|..+. .+|+.|+|++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 345667777776666641 12467777777777777776533 467777777777777776553 367777777777
Q ss_pred ccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCc
Q 046470 583 ITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLN 662 (888)
Q Consensus 583 i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 662 (888)
++.+|..+. .+|+.|++++|++ ..+|.. +. ++|++|++++|..... +..+. ++|+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~-l~--~sL~~L~Ls~N~Lt~L-----------------P~~lp--~sL~ 307 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKI-SCLPEN-LP--EELRYLSVYDNSIRTL-----------------PAHLP--SGIT 307 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCcc-Cccccc-cC--CCCcEEECCCCccccC-----------------cccch--hhHH
Confidence 777776654 4677777777754 566654 32 4677777777655421 00011 2344
Q ss_pred eEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCC
Q 046470 663 FLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRS 742 (888)
Q Consensus 663 ~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~ 742 (888)
.|+++.|....++. .....|+.|.+.++....+.. .+ .++|+.|++++|.+..++ .. ..++
T Consensus 308 ~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~LP-~~----------lp~~ 368 (754)
T PRK15370 308 HLNVQSNSLTALPE-----TLPPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQITVLP-ET----------LPPT 368 (754)
T ss_pred HHHhcCCccccCCc-----cccccceeccccCCccccCCh-hh--cCcccEEECCCCCCCcCC-hh----------hcCC
Confidence 55555544332211 112356666666665432221 12 368888998888877442 11 2367
Q ss_pred ccEEEEecCCCCCCCchhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccc
Q 046470 743 LSIVSVENCEKMKDLTWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNV 812 (888)
Q Consensus 743 L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 812 (888)
|+.|+|++| .++.+|.- ..++|+.|++++| .+..++.. + +.....+|++..|.+.+++
T Consensus 369 L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N-~L~~LP~s--------l-~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 369 ITTLDVSRN-ALTNLPEN-LPAALQIMQASRN-NLVRLPES--------L-PHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCEEECCCC-cCCCCCHh-HHHHHHHHhhccC-CcccCchh--------H-HHHhhcCCCccEEEeeCCC
Confidence 889999888 45565531 1246888888885 46665430 0 0123446788888888875
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.49 E-value=8.3e-15 Score=163.82 Aligned_cols=282 Identities=22% Similarity=0.283 Sum_probs=152.3
Q ss_pred cceEEEEecCCCccCCC-CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCC
Q 046470 503 GAKRISLRGNRFDSLSE-IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWT 581 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~-~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 581 (888)
++++|++++|.+..+|. +..+++|+.|.++.|.+...|.+ ...+++|++|.|.+|.+..+|.++..+++|++|++++|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 46666666666665552 44556666666666666666533 55666666666666666666666666666666666666
Q ss_pred cccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCC
Q 046470 582 EITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHL 661 (888)
Q Consensus 582 ~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 661 (888)
++...|.-+..+..+..++.++|..+..++. .. ++++++..+... ...+.++..+++
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~----------------~~~~~~i~~l~~- 181 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG----------------GSFLIDIYNLTH- 181 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc----------------cchhcchhhhhe-
Confidence 6666666666666666666666633233332 11 444444333222 112333333333
Q ss_pred ceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCC
Q 046470 662 NFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFR 741 (888)
Q Consensus 662 ~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~ 741 (888)
.|+++.+... .-.+... ..++.+. |.......+.+. -++|+.|+.+.|.+..+... ....
T Consensus 182 -~ldLr~N~~~-~~dls~~----~~l~~l~---c~rn~ls~l~~~-g~~l~~L~a~~n~l~~~~~~----------p~p~ 241 (1081)
T KOG0618|consen 182 -QLDLRYNEME-VLDLSNL----ANLEVLH---CERNQLSELEIS-GPSLTALYADHNPLTTLDVH----------PVPL 241 (1081)
T ss_pred -eeecccchhh-hhhhhhc----cchhhhh---hhhcccceEEec-CcchheeeeccCcceeeccc----------cccc
Confidence 3555544433 1111111 1111111 111111111111 24566666666555533222 2356
Q ss_pred CccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCC
Q 046470 742 SLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPN 820 (888)
Q Consensus 742 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~ 820 (888)
+|++++++.+. +..+| |++.+++|+.|.+.++. +..++. ......+|+.|.+..| .++.++..
T Consensus 242 nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~-------------ri~~~~~L~~l~~~~n-el~yip~~ 305 (1081)
T KOG0618|consen 242 NLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPL-------------RISRITSLVSLSAAYN-ELEYIPPF 305 (1081)
T ss_pred cceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHH-------------HHhhhhhHHHHHhhhh-hhhhCCCc
Confidence 78888888773 44444 78888888888888744 455543 3444556666666666 46666666
Q ss_pred CCCCCCccEEEecCCCCCCCCCCCC
Q 046470 821 PLPFPKLKKIQIYSCPELKKLPLNS 845 (888)
Q Consensus 821 ~~~~p~L~~L~i~~C~~L~~lP~~~ 845 (888)
...+.+|+.|++.. .+|..+|...
T Consensus 306 le~~~sL~tLdL~~-N~L~~lp~~~ 329 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQS-NNLPSLPDNF 329 (1081)
T ss_pred ccccceeeeeeehh-ccccccchHH
Confidence 66666777777766 3566666643
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.6e-13 Score=158.85 Aligned_cols=255 Identities=18% Similarity=0.184 Sum_probs=191.0
Q ss_pred cceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCc
Q 046470 503 GAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTE 582 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 582 (888)
.-..|+++.+.++.+|... .++|+.|++.+|.++.+|.. +++|++|+|++|+++.+|.. ..+|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4567899999999887621 25899999999999988752 68999999999999999854 4689999999999
Q ss_pred ccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCc
Q 046470 583 ITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLN 662 (888)
Q Consensus 583 i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 662 (888)
++.+|... .+|+.|++++|++ ..+|.. +++|++|++++|.+... ..+ ..+|+
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N~L-t~LP~~----p~~L~~LdLS~N~L~~L------------------p~l--p~~L~ 325 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGNQL-TSLPVL----PPGLQELSVSDNQLASL------------------PAL--PSELC 325 (788)
T ss_pred hhhhhhch---hhcCEEECcCCcc-cccccc----ccccceeECCCCccccC------------------CCC--ccccc
Confidence 99988643 6788999999965 677752 47899999999876521 001 13466
Q ss_pred eEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCC
Q 046470 663 FLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRS 742 (888)
Q Consensus 663 ~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~ 742 (888)
.|.++.|....++. +...|+.|+++++....+... .++|+.|++++|.+..++ . ...+
T Consensus 326 ~L~Ls~N~L~~LP~------lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP-~-----------l~~~ 383 (788)
T PRK15387 326 KLWAYNNQLTSLPT------LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLP-A-----------LPSG 383 (788)
T ss_pred ccccccCccccccc------cccccceEecCCCccCCCCCC----CcccceehhhccccccCc-c-----------cccc
Confidence 67777666544332 335788899988765443321 357888999888887542 1 2457
Q ss_pred ccEEEEecCCCCCCCchhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCCC
Q 046470 743 LSIVSVENCEKMKDLTWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPL 822 (888)
Q Consensus 743 L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~ 822 (888)
|+.|+|++| .+..+|.. .++|+.|++++|. ++.++. .+.+|+.|+++++ +++.+|....
T Consensus 384 L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~----------------l~~~L~~L~Ls~N-qLt~LP~sl~ 442 (788)
T PRK15387 384 LKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM----------------LPSGLLSLSVYRN-QLTRLPESLI 442 (788)
T ss_pred cceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc----------------chhhhhhhhhccC-cccccChHHh
Confidence 999999998 46666643 4689999999964 665543 2357889999987 6889988888
Q ss_pred CCCCccEEEecCCC
Q 046470 823 PFPKLKKIQIYSCP 836 (888)
Q Consensus 823 ~~p~L~~L~i~~C~ 836 (888)
.+++|+.|++.+++
T Consensus 443 ~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 HLSSETTVNLEGNP 456 (788)
T ss_pred hccCCCeEECCCCC
Confidence 89999999999986
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=1.1e-15 Score=154.86 Aligned_cols=281 Identities=20% Similarity=0.237 Sum_probs=174.3
Q ss_pred cceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCC-CCCcccChh-hhcccCCCEEec
Q 046470 503 GAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGS-NALSKLPSG-ISSLVSLHHLDL 578 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-~~i~~lp~~-i~~L~~L~~L~L 578 (888)
....|.+..|.|+.+|. |..+++||.|+|+.|.|+.|.++.|.+++.|..|-+-+ |+|+.+|.. |++|..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 56678888888888874 77888888888888888888888888888877765555 788888754 778888888888
Q ss_pred cCCccccc-CcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhc
Q 046470 579 SWTEITGL-PQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLG 657 (888)
Q Consensus 579 ~~~~i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 657 (888)
.-|++..+ ...+..|++|..|.+..|.+ ..++.+.+..+.+++++.+..+...+..-.+|.... ......+++.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~----~a~~~ietsg 222 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD----LAMNPIETSG 222 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhH----Hhhchhhccc
Confidence 88888775 44578888888888888854 777776688888888888776664432211111100 0001111111
Q ss_pred CCCCceEEEEEechhhH--HhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCcccccc
Q 046470 658 LKHLNFLSWSFRSSLAV--QKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKL 735 (888)
Q Consensus 658 L~~L~~L~l~~~~~~~~--~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~ 735 (888)
..-.....+........ ..+.... .+....+..............+..+++|+.|++++|.++.+...|+.
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~--esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe----- 295 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSL--ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE----- 295 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhH--HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc-----
Confidence 11110000000000000 0000000 00000111111111112222378889999999999999988777776
Q ss_pred ccccCCCccEEEEecCCCCCCCc--hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccc
Q 046470 736 FQSGFRSLSIVSVENCEKMKDLT--WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNV 812 (888)
Q Consensus 736 ~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 812 (888)
....++.|.|..| ++..+. .+..+..|+.|+|.+ +.|+.+.. ..+..+.+|.+|.+-.+|
T Consensus 296 ---~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~------------~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 296 ---GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP------------GAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ---chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEec------------ccccccceeeeeehccCc
Confidence 5788888888888 566654 467888899999988 45776644 355566667777776543
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=8.7e-14 Score=162.29 Aligned_cols=223 Identities=19% Similarity=0.240 Sum_probs=167.2
Q ss_pred ccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCC
Q 046470 502 EGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWT 581 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 581 (888)
+.++.|++++|.+..+|.. .+++|++|++++|.++.+|..+ ..+|+.|+|++|.+..+|..+. .+|++|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 5799999999999988753 2368999999999999888763 2479999999999999998875 58999999999
Q ss_pred cccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCC
Q 046470 582 EITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHL 661 (888)
Q Consensus 582 ~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 661 (888)
+++.+|..+. .+|++|++++|++ ..+|.. +. ++|++|++++|..... +..+ .++|
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~-lp--~sL~~L~Ls~N~Lt~L-----------------P~~l--~~sL 327 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDNSI-RTLPAH-LP--SGITHLNVQSNSLTAL-----------------PETL--PPGL 327 (754)
T ss_pred ccCccccccC--CCCcEEECCCCcc-ccCccc-ch--hhHHHHHhcCCccccC-----------------Cccc--cccc
Confidence 9999998765 5899999999965 678865 32 5789999998876521 0111 2467
Q ss_pred ceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCC
Q 046470 662 NFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFR 741 (888)
Q Consensus 662 ~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~ 741 (888)
+.|.++.|....++. .+.+.|+.|+++++....... .+ .++|+.|++++|.+..++.. ...
T Consensus 328 ~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~LP~~-----------l~~ 388 (754)
T PRK15370 328 KTLEAGENALTSLPA-----SLPPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNLPEN-----------LPA 388 (754)
T ss_pred eeccccCCccccCCh-----hhcCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCCCHh-----------HHH
Confidence 888887776554332 223588999999886543221 12 36899999999988865322 234
Q ss_pred CccEEEEecCCCCCCCc-----hhhhccCcceEeeeccc
Q 046470 742 SLSIVSVENCEKMKDLT-----WLVFVQNLKELEISRCH 775 (888)
Q Consensus 742 ~L~~L~L~~c~~l~~l~-----~l~~l~~L~~L~L~~c~ 775 (888)
+|+.|++++| .+..+| ..+.++++..|+|.+++
T Consensus 389 sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 389 ALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 7999999998 466654 23456889999999865
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.39 E-value=2.5e-13 Score=160.99 Aligned_cols=310 Identities=22% Similarity=0.289 Sum_probs=186.2
Q ss_pred CCcccccccceEEEEecCC--CccCCC--CCCCCchhhhhhccCC-cccccchHHhcCCcccEEEcCCCCCcccChhhhc
Q 046470 495 APAVEEWEGAKRISLRGNR--FDSLSE--IPTSPRLITLLLIANS-IDEITDGFFQSMSSLRVLSLGSNALSKLPSGISS 569 (888)
Q Consensus 495 ~~~~~~~~~lr~L~l~~n~--~~~l~~--~~~~~~Lr~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 569 (888)
++.....++++.|-+.+|. +..++. +..++.||+|++++|. +.++|.. ++++-+||||+++++.++.+|.++++
T Consensus 538 ~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 538 IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGN 616 (889)
T ss_pred ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHH
Confidence 3334445579999999986 566665 7889999999999887 6677765 89999999999999999999999999
Q ss_pred ccCCCEEeccCCc-ccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccch
Q 046470 570 LVSLHHLDLSWTE-ITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDA 648 (888)
Q Consensus 570 L~~L~~L~L~~~~-i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 648 (888)
|..|.+|++..+. +..+|..+..|.+|++|.+..... ......++.+.+|++|....+....
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~--~~~~~~l~el~~Le~L~~ls~~~~s--------------- 679 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL--SNDKLLLKELENLEHLENLSITISS--------------- 679 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeecccc--ccchhhHHhhhcccchhhheeecch---------------
Confidence 9999999999984 445666677799999999977641 1111124455555555544433221
Q ss_pred hhHHHHhhcCCCCceEEEEEe-chhhHHhhhcCCccccceEEEEEeecCCCcccccc-----cc-ccCCcceEEeec-CC
Q 046470 649 GLLMKELLGLKHLNFLSWSFR-SSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLH-----LA-YMENLQELHLED-SD 720 (888)
Q Consensus 649 ~~~~~~L~~L~~L~~L~l~~~-~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~-----l~-~l~~L~~L~l~~-~~ 720 (888)
...+..+..+..|..+..... .................++.|.+.+|......... .. .++++..+.+.+ ..
T Consensus 680 ~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 112222333333332111110 00111111222223457788888887763222111 11 133444433333 22
Q ss_pred cceeeecCCccccccccccCCCccEEEEecCCCCCCC-chhhhccCcceEeeecccccchhcccccccccccccCccCcc
Q 046470 721 LEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL-TWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNF 799 (888)
Q Consensus 721 l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~ 799 (888)
... +.|. ...++|+.|.+..|..+..+ |....+..++.+.+.. +.+..+... ...+.
T Consensus 760 ~r~--l~~~--------~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~~~-----------~~l~~ 817 (889)
T KOG4658|consen 760 LRD--LTWL--------LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLRML-----------CSLGG 817 (889)
T ss_pred ccc--cchh--------hccCcccEEEEecccccccCCCHHHHhhhcccEEecc-cccccceee-----------ecCCC
Confidence 221 2222 24789999999999888775 4556666666644444 223333110 13334
Q ss_pred ccccceeeccccccccccCCCC----CCCCCccEEEecCC-CCCCCCCCCC
Q 046470 800 FAQLEALNIFNNVNLKSIYPNP----LPFPKLKKIQIYSC-PELKKLPLNS 845 (888)
Q Consensus 800 ~p~L~~L~L~~~~~L~~i~~~~----~~~p~L~~L~i~~C-~~L~~lP~~~ 845 (888)
||++..+.+.... +..+.... ..+|.+.++.+.+| +++..+|.+.
T Consensus 818 l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 818 LPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred CceeEecccCccc-hhheehhcCcccccCccccccceeccccceeecCCcc
Confidence 4444444444332 44433333 44788999999997 9999999873
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=6e-11 Score=147.83 Aligned_cols=283 Identities=17% Similarity=0.240 Sum_probs=175.8
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKR 227 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~ 227 (888)
+.+|-|+.-.+.+ .. ....+++.|.|++|.||||++..+.... +.++|+++. .+...++..
T Consensus 14 ~~~~~R~rl~~~l----~~-~~~~~~~~v~apaG~GKTtl~~~~~~~~-------~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 14 HNTVVRERLLAKL----SG-ANNYRLVLVTSPAGYGKTTLISQWAAGK-------NNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred cccCcchHHHHHH----hc-ccCCCeEEEECCCCCCHHHHHHHHHHhC-------CCeEEEecCcccCCHHHHHHHHHHH
Confidence 4567777655444 33 2467899999999999999999987532 258999886 334445555
Q ss_pred cCCChh----h-------hcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCcc--chh-hhCCCCCCCCCCcEEEEEecc
Q 046470 228 IGFSEN----W-------WKKKSPEEKAVDISSILS--RKEFVLLLDDIWKPI--NLK-DMGVPLQNLNAGSKIVLTTRS 291 (888)
Q Consensus 228 l~~~~~----~-------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~-~l~~~l~~~~~gs~iivTtR~ 291 (888)
++.... . ....+.......+...+. +.+++|||||+.... ... .+...+.....+.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 421100 0 011222333444444443 678999999997542 112 222222333456788899998
Q ss_pred hhhhh--c--cCCceeEcC----CCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCCh
Q 046470 292 VDVCD--Q--MDAEKVEVS----CLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNI 363 (888)
Q Consensus 292 ~~v~~--~--~~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~ 363 (888)
..-.. . ......++. +|+.+|+.++|....+..- -.+...+|.+.|+|.|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 42111 1 111244555 9999999999988765321 25678899999999999999998877543210
Q ss_pred hHHHHHHHHHHhcccccCCc-hHHHHhhhhh-ccccchHHHHHHHhhhccCCCCccccHHHHHHHHHHcCCCcCcchhHH
Q 046470 364 GDWKRAIKKIRTSASKFSGM-EEKVFSRLKF-SYDSLSDELRSCLLYCCLYPEDYKISKRELIDYWISEGFVDDFDDGWE 441 (888)
Q Consensus 364 ~~w~~~~~~l~~~~~~~~~~-~~~~~~~l~~-sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~ 441 (888)
. ......+ .+. ...+...+.- .++.||++.+..+...|+++ .++.+ +.. .+. +..++..
T Consensus 236 ~--~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~-----~l~-~~~~~~~ 296 (903)
T PRK04841 236 L--HDSARRL-------AGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIV-----RVT-GEENGQM 296 (903)
T ss_pred h--hhhhHhh-------cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHH-----HHc-CCCcHHH
Confidence 0 0111111 110 1234444433 37899999999999999997 23322 222 122 2344788
Q ss_pred HHHHHHHhccccc-c--CCcchhhhhHHHHHHHHHH
Q 046470 442 FINDLLHACLLEE-E--GDDHVKMHDMIREMSLWVA 474 (888)
Q Consensus 442 ~l~~L~~~~ll~~-~--~~~~~~mHdlv~~~a~~~~ 474 (888)
.+++|.+.+++.. . ...+|+.|++++++.+...
T Consensus 297 ~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 297 RLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 9999999998653 2 3357899999999998654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=2.3e-14 Score=145.49 Aligned_cols=271 Identities=20% Similarity=0.257 Sum_probs=168.3
Q ss_pred chhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccC-CcccccCcc-cccCCccceecc
Q 046470 525 RLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSW-TEITGLPQE-LKALEKLRYLNL 601 (888)
Q Consensus 525 ~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~-~~i~~Lp~~-i~~L~~L~~L~l 601 (888)
.-..+.|..|.|+.+|+..|+.+++||.||||+|+|+.+ |..|..+..|-.|-+-+ |+|+++|.. |++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456688999999999999999999999999999999988 89999999988887766 799999875 899999999999
Q ss_pred ccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhH---H---
Q 046470 602 EHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAV---Q--- 675 (888)
Q Consensus 602 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~---~--- 675 (888)
.-|++ .-++.+.+..|++|..|.+.++..... .-..+..+..++.+.+..+..... +
T Consensus 148 Nan~i-~Cir~~al~dL~~l~lLslyDn~~q~i----------------~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 148 NANHI-NCIRQDALRDLPSLSLLSLYDNKIQSI----------------CKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred Chhhh-cchhHHHHHHhhhcchhcccchhhhhh----------------ccccccchhccchHhhhcCccccccccchhh
Confidence 98865 667777799999999999998766432 111334455555555543331100 0
Q ss_pred hhhcCC----ccccceEEEEEeecCCCccccccccccCCcceE--Eeec-CCcceeeecCCccccccccccCCCccEEEE
Q 046470 676 KFFKYP----KLVSITQSVVVYQCECPLFNVLHLAYMENLQEL--HLED-SDLEEMRIDGPEEVKKLFQSGFRSLSIVSV 748 (888)
Q Consensus 676 ~~~~~~----~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L--~l~~-~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L 748 (888)
...... +...+.....+.+.+......-.+. ..++.+ .+.. .....+.|.. -...+++|++|+|
T Consensus 211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~--c~~esl~s~~~~~d~~d~~cP~~-------cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL--CSLESLPSRLSSEDFPDSICPAK-------CFKKLPNLRKLNL 281 (498)
T ss_pred hHHhhchhhcccceecchHHHHHHHhcccchhhhh--hhHHhHHHhhccccCcCCcChHH-------HHhhcccceEecc
Confidence 000000 0000000000000000000000000 011111 0111 1011111110 1146888899999
Q ss_pred ecCCCCCCCc--hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCC-CCCCC
Q 046470 749 ENCEKMKDLT--WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPN-PLPFP 825 (888)
Q Consensus 749 ~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p 825 (888)
++| .++.+. ++..+..|++|.|.. +.++.+.. ..+.++..|+.|+|.++ +++.+... .....
T Consensus 282 snN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~------------~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 282 SNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS------------GMFQGLSGLKTLSLYDN-QITTVAPGAFQTLF 346 (498)
T ss_pred CCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH------------HhhhccccceeeeecCC-eeEEEecccccccc
Confidence 888 566654 788888899998888 45766644 35677888999999887 56655433 23355
Q ss_pred CccEEEecCCC
Q 046470 826 KLKKIQIYSCP 836 (888)
Q Consensus 826 ~L~~L~i~~C~ 836 (888)
+|.+|.+...|
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 67777666543
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=1e-09 Score=122.53 Aligned_cols=285 Identities=16% Similarity=0.148 Sum_probs=163.7
Q ss_pred CCcccchHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec------chHHHHH
Q 046470 154 DHTVVGQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS------TLQDDIG 225 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~------~l~~~i~ 225 (888)
++.++||+.+++++...+... +...+.+.|+|++|+|||++++.+++.. ......-..+++++. .++..|.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 357899999999999998542 2344668899999999999999999987 222222344555543 5677788
Q ss_pred HHcCCChhhhcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCcc------chhhhCCCCCCCCCCcE--EEEEecchhhh
Q 046470 226 KRIGFSENWWKKKSPEEKAVDISSILS--RKEFVLLLDDIWKPI------NLKDMGVPLQNLNAGSK--IVLTTRSVDVC 295 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--iivTtR~~~v~ 295 (888)
.++..........+..+....+.+.++ +++.+||||+++... .+..+...+. ...+++ +|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchh
Confidence 877542111123355677777777775 456899999998642 2222222121 122333 56666554332
Q ss_pred --------hccCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHh----CCCccHHHHHHHHh--c--c
Q 046470 296 --------DQMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLAREC----GGLPLALKTVGRAM--K--S 359 (888)
Q Consensus 296 --------~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c----~g~Plai~~~~~~l--~--~ 359 (888)
...+...+.+.+++.++..+++..++.... ....--++..+.|++.+ |..+.|+.++-.+. + .
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 223333679999999999999998874321 00011134445555554 55677777664322 1 1
Q ss_pred C---CChhHHHHHHHHHHhcccccCCchHHHHhhhhhccccchHHHHHHHhhhccCCC--CccccHHHHHHH--HHHc--
Q 046470 360 R---SNIGDWKRAIKKIRTSASKFSGMEEKVFSRLKFSYDSLSDELRSCLLYCCLYPE--DYKISKRELIDY--WISE-- 430 (888)
Q Consensus 360 ~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~--~~~i~~~~li~~--w~a~-- 430 (888)
. -+.+....+.+... .....-.+..||.+.|..+..++..-+ ...+...++... .+++
T Consensus 266 ~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 1 13445555444331 112233577899988776665543211 123444444432 1222
Q ss_pred CCCc-CcchhHHHHHHHHHhccccc
Q 046470 431 GFVD-DFDDGWEFINDLLHACLLEE 454 (888)
Q Consensus 431 g~~~-~~~~~~~~l~~L~~~~ll~~ 454 (888)
|.-. ......+|+++|...+++..
T Consensus 333 ~~~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 333 GYEPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CCCcCcHHHHHHHHHHHHhcCCeEE
Confidence 2211 11225667777777777764
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=1.2e-09 Score=115.14 Aligned_cols=174 Identities=15% Similarity=0.208 Sum_probs=111.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-----chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHh
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-----TLQDDIGKRIGFSENWWKKKSPEEKAVDISSIL 251 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-----~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 251 (888)
..+++.|+|++|+||||+++.+++.. .. ... ..+|+..+ +++..|+..++.+. ...+.......+.+.+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~---~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKLVNTRVDAEDLLRMVAADFGLET---EGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeeeeCCCCCHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHH
Confidence 45689999999999999999999886 21 221 23344322 67778888887653 2233333334443332
Q ss_pred -----ccCcEEEEEccCCCcc--chhhhCC---CCCCCCCCcEEEEEecchhhhhc--------cCC--c-eeEcCCCCh
Q 046470 252 -----SRKEFVLLLDDIWKPI--NLKDMGV---PLQNLNAGSKIVLTTRSVDVCDQ--------MDA--E-KVEVSCLAH 310 (888)
Q Consensus 252 -----~~k~~LlVlDdv~~~~--~~~~l~~---~l~~~~~gs~iivTtR~~~v~~~--------~~~--~-~~~l~~L~~ 310 (888)
.+++.+||+||++... .++.+.. .-.+......|++|.... .... ... . .+++.+++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 6788999999998753 3444321 111222233455665542 2111 111 2 678999999
Q ss_pred HHHHHHHHHHhhcccCCCC-CChHHHHHHHHHHhCCCccHHHHHHHHh
Q 046470 311 DEAWKLFQKMVERSTLDSH-ASIPELAKTLARECGGLPLALKTVGRAM 357 (888)
Q Consensus 311 ~~a~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~g~Plai~~~~~~l 357 (888)
+|..+++...+........ .-.++..+.|++.|+|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999887754321111 2236889999999999999999998765
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=5.1e-12 Score=137.13 Aligned_cols=63 Identities=32% Similarity=0.327 Sum_probs=29.6
Q ss_pred HhcCCcccEEEcCCCCCc-----ccChhhhcccCCCEEeccCCcccc-------cCcccccCCccceeccccccc
Q 046470 544 FQSMSSLRVLSLGSNALS-----KLPSGISSLVSLHHLDLSWTEITG-------LPQELKALEKLRYLNLEHAYM 606 (888)
Q Consensus 544 ~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~i~~-------Lp~~i~~L~~L~~L~l~~~~~ 606 (888)
|..+.+|++|++++|.++ .++..+...++|++|+++++.+.. ++..+..+++|+.|++++|.+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 444444555555555542 233344444455555555544431 223344455555555555544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=2.9e-11 Score=115.02 Aligned_cols=138 Identities=28% Similarity=0.376 Sum_probs=40.6
Q ss_pred CCCccCCCCCCCCchhhhhhccCCcccccchHHh-cCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCccc
Q 046470 512 NRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQ-SMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQEL 590 (888)
Q Consensus 512 n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i 590 (888)
+.+...+...++.+++.|++.+|.++.+.. ++ .+.+|++|+|++|.|+.++ ++..+++|++|++++|.|+.++..+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -----------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 344444555555666667777776665532 33 4566777777777777664 5666777777777777777765544
Q ss_pred -ccCCccceeccccccccCCccc-cccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEE
Q 046470 591 -KALEKLRYLNLEHAYMLSIIPH-QLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSW 666 (888)
Q Consensus 591 -~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 666 (888)
..+++|++|++++|++ ..+.. ..+..|++|++|++.+|+.... ......-+..+++|+.|+-
T Consensus 84 ~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~-------------~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEK-------------KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-------------TTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccch-------------hhHHHHHHHHcChhheeCC
Confidence 3567777777777654 22211 1255677777777777665421 2223344455666666653
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.14 E-value=2.1e-09 Score=115.38 Aligned_cols=271 Identities=15% Similarity=0.111 Sum_probs=153.2
Q ss_pred CcccchHHHHHHHHHHhhcC---CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-----chHHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ---DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-----TLQDDIGK 226 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-----~l~~~i~~ 226 (888)
.+|+|++..++++..++... ......+.++|++|+|||+||+.+++.. ...+ ..+..+ ..+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhHHHHHH
Confidence 35899999999998888631 2345668899999999999999999876 2222 112211 11112222
Q ss_pred HcCCCh----hhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhhhhccC---
Q 046470 227 RIGFSE----NWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDVCDQMD--- 299 (888)
Q Consensus 227 ~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~--- 299 (888)
.++... +..+..+ ......+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+.....
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhc
Confidence 222110 0001111 1223345555556666666666655444331 111 2445556777654432211
Q ss_pred CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCChhHHHHHHHHHHhcccc
Q 046470 300 AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNIGDWKRAIKKIRTSASK 379 (888)
Q Consensus 300 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~ 379 (888)
...+++++++.++..+++.+.+.......+ ++....|++.|+|.|-.+..++..+ |..+. ..+.....
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~it 218 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKIIN 218 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCCcC
Confidence 226799999999999999998875432222 5778899999999997765555432 11100 00000000
Q ss_pred cCCchHHHHhhhhhccccchHHHHHHHh-hhccCCCCccccHHHHHHHHHHcCCCcCcchhHHHHH-HHHHhccccccCC
Q 046470 380 FSGMEEKVFSRLKFSYDSLSDELRSCLL-YCCLYPEDYKISKRELIDYWISEGFVDDFDDGWEFIN-DLLHACLLEEEGD 457 (888)
Q Consensus 380 ~~~~~~~~~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~l~-~L~~~~ll~~~~~ 457 (888)
...-......+..+|..++.+.+..+. ..+.++.+ .+..+.+ |.-+=.+...++..++ .|++++|++....
T Consensus 219 -~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~i-----a~~lg~~~~~~~~~~e~~Li~~~li~~~~~ 291 (305)
T TIGR00635 219 -RDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTL-----AAALGEDADTIEDVYEPYLLQIGFLQRTPR 291 (305)
T ss_pred -HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHH-----HHHhCCCcchHHHhhhHHHHHcCCcccCCc
Confidence 000012233356678889888777666 44666543 3444333 3322233344777788 6999999986533
No 30
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.11 E-value=3.1e-08 Score=109.36 Aligned_cols=287 Identities=15% Similarity=0.156 Sum_probs=159.9
Q ss_pred CcccchHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCC---CEEEEEEec------chHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHF---DVVIWAAVS------TLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~------~l~~~ 223 (888)
+.++||+.++++|..++... +...+.+.|+|++|+|||++++.+++......... -..+|+.+. .++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 46899999999999998642 23456799999999999999999998762111111 134566654 56777
Q ss_pred HHHHc---CCChhhhcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCcc-c----hhhhCCCC-CCCC--CCcEEEEEec
Q 046470 224 IGKRI---GFSENWWKKKSPEEKAVDISSILS--RKEFVLLLDDIWKPI-N----LKDMGVPL-QNLN--AGSKIVLTTR 290 (888)
Q Consensus 224 i~~~l---~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~gs~iivTtR 290 (888)
|+.++ +.... ....+..+....+.+.+. +++++||||+++... . +..+.... .... ....+|.+|.
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 77777 32211 122344555666666663 567899999998651 1 22222110 1111 2233444554
Q ss_pred chhh--------hhccCCceeEcCCCChHHHHHHHHHHhhcc--cCCCCCChHHHHHHHHHHhCCCccHH-HHHHHHh--
Q 046470 291 SVDV--------CDQMDAEKVEVSCLAHDEAWKLFQKMVERS--TLDSHASIPELAKTLARECGGLPLAL-KTVGRAM-- 357 (888)
Q Consensus 291 ~~~v--------~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g~Plai-~~~~~~l-- 357 (888)
.... ........+.+.+++.++..+++..++... ....+++..+...+++..+.|.|-.+ .++-.+.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3322 222222368899999999999999887521 11122222334455666677887443 3332211
Q ss_pred c--cC---CChhHHHHHHHHHHhcccccCCchHHHHhhhhhccccchHHHHHHHhhhccC--CCCccccHHHHHHHH--H
Q 046470 358 K--SR---SNIGDWKRAIKKIRTSASKFSGMEEKVFSRLKFSYDSLSDELRSCLLYCCLY--PEDYKISKRELIDYW--I 428 (888)
Q Consensus 358 ~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~f--p~~~~i~~~~li~~w--~ 428 (888)
. .. -+.+..+.+.+.+. .....-++..||.+.|..+..++.. ..+..+...++...+ +
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 11 23334444443331 1222335668888887666654421 133445555555532 1
Q ss_pred HcCC-CcCc--chhHHHHHHHHHhcccccc
Q 046470 429 SEGF-VDDF--DDGWEFINDLLHACLLEEE 455 (888)
Q Consensus 429 a~g~-~~~~--~~~~~~l~~L~~~~ll~~~ 455 (888)
.+.+ +.+. ....++++.|...+++...
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1211 1111 1266777888888887754
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=1.7e-11 Score=133.03 Aligned_cols=129 Identities=25% Similarity=0.270 Sum_probs=61.0
Q ss_pred ccceEEEEecCCCcc-----CC-CCCCCCchhhhhhccCCcccc------cchHHhcCCcccEEEcCCCCCc-ccChhhh
Q 046470 502 EGAKRISLRGNRFDS-----LS-EIPTSPRLITLLLIANSIDEI------TDGFFQSMSSLRVLSLGSNALS-KLPSGIS 568 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~-----l~-~~~~~~~Lr~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~ 568 (888)
..++.+.+.++.+.. ++ .+...+.++.|.++++.+... ....+..+++|+.|++++|.+. ..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 345566666555422 11 123344455555555544311 1123445556666666666554 2333343
Q ss_pred cccC---CCEEeccCCcccc-----cCcccccC-CccceeccccccccC----CccccccCCCCCCcEEeccCCCC
Q 046470 569 SLVS---LHHLDLSWTEITG-----LPQELKAL-EKLRYLNLEHAYMLS----IIPHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 569 ~L~~---L~~L~L~~~~i~~-----Lp~~i~~L-~~L~~L~l~~~~~l~----~lp~~~i~~L~~L~~L~l~~~~~ 631 (888)
.+.+ |++|++++|+++. +...+..+ ++|+.|++++|.+.. .++.. +..+++|++|++.+|..
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 3333 6666666665542 22334444 556666666654421 11211 34455566666655543
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.10 E-value=1.7e-09 Score=116.67 Aligned_cols=269 Identities=14% Similarity=0.116 Sum_probs=150.4
Q ss_pred CcccchHHHHHHHHHHhhc---CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-----chHHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITD---QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-----TLQDDIGK 226 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-----~l~~~i~~ 226 (888)
..|+|++..++.+..++.. .....+.+.++|++|+||||+|+.+++.. ...+ .++..+ ..+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecccccChHHHHHHHH
Confidence 4689999999998877753 23445678899999999999999999886 2221 112221 11122222
Q ss_pred HcCCCh----hhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhhhhccC---
Q 046470 227 RIGFSE----NWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDVCDQMD--- 299 (888)
Q Consensus 227 ~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~--- 299 (888)
.++... +..+..+ ......+...+.+.+..+|+|+..+...+.. .++ +.+-|..|||...+.....
T Consensus 99 ~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred hcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHhc
Confidence 221100 0000000 1112223344444455555555433322110 111 2344556777544432211
Q ss_pred CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCChhHHHHHHHHHHhcccc
Q 046470 300 AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNIGDWKRAIKKIRTSASK 379 (888)
Q Consensus 300 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~ 379 (888)
...+++++++.++..+++.+.+.......+ ++.+..|++.|+|.|-.+..+...+. .|.... ....-.
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~ 239 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT 239 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC
Confidence 126899999999999999998876543333 57889999999999965554444321 121110 000000
Q ss_pred cCCchHHHHhhhhhccccchHHHHHHHh-hhccCCCCccccHHHHHHHHHHcCCCcCcchhHHHHH-HHHHhcccccc
Q 046470 380 FSGMEEKVFSRLKFSYDSLSDELRSCLL-YCCLYPEDYKISKRELIDYWISEGFVDDFDDGWEFIN-DLLHACLLEEE 455 (888)
Q Consensus 380 ~~~~~~~~~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~l~-~L~~~~ll~~~ 455 (888)
...-......+...+..|+...+..+. ....|+.+ .+..+.+ |+-+-.+...+++.++ .|++.+|++..
T Consensus 240 -~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~-----a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 240 -KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTL-----AAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred -HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHH-----HHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 000123445566778889888777775 66677655 3555544 3333333444777788 89999999865
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=5.1e-11 Score=113.30 Aligned_cols=130 Identities=27% Similarity=0.371 Sum_probs=57.2
Q ss_pred cccccccceEEEEecCCCccCCCCC-CCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhh-hcccCCC
Q 046470 497 AVEEWEGAKRISLRGNRFDSLSEIP-TSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGI-SSLVSLH 574 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~~~~-~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~L~~L~ 574 (888)
...+..+++.|++.+|.+..+..+. .+.+|++|++++|.++.+.. +..++.|++|++++|.|+.++..+ ..+++|+
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3344457899999999999988876 58899999999999998865 888999999999999999997666 4699999
Q ss_pred EEeccCCcccccC--cccccCCccceeccccccccCCcc---ccccCCCCCCcEEeccCC
Q 046470 575 HLDLSWTEITGLP--QELKALEKLRYLNLEHAYMLSIIP---HQLISGFSKLEVLRLLGC 629 (888)
Q Consensus 575 ~L~L~~~~i~~Lp--~~i~~L~~L~~L~l~~~~~l~~lp---~~~i~~L~~L~~L~l~~~ 629 (888)
.|++++|+|.++- ..+..+++|++|++.+|++... + ..++..+++|+.||-...
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 9999999988753 4578899999999999987433 3 234678999999987644
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.07 E-value=6.2e-10 Score=114.73 Aligned_cols=189 Identities=19% Similarity=0.251 Sum_probs=101.2
Q ss_pred ccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-----chHHHH-------
Q 046470 157 VVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-----TLQDDI------- 224 (888)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-----~l~~~i------- 224 (888)
|+||+.++++|.+++.. +..+.+.|+|+.|+|||+|++.+.+.. .. ..+ .++|+... .....+
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~-~~-~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINEL-KE-KGY-KVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHh-hh-cCC-cEEEEecccchhhhHHHHHHHHHHHH
Confidence 68999999999999977 557889999999999999999999876 11 111 23333332 111111
Q ss_pred ---HHHcC--CChhhh------cCCCHHHHHHHHHHHhc--cCcEEEEEccCCCcc-ch---h----hhCCCCCC--CCC
Q 046470 225 ---GKRIG--FSENWW------KKKSPEEKAVDISSILS--RKEFVLLLDDIWKPI-NL---K----DMGVPLQN--LNA 281 (888)
Q Consensus 225 ---~~~l~--~~~~~~------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~---~----~l~~~l~~--~~~ 281 (888)
...++ .+.... ...........+.+.+. +++.+||+||+.... .. . .+...+.. ...
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 11111 000000 01112233333444443 456999999997655 11 1 11111111 223
Q ss_pred CcEEEEEecchhhhhc--------cCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 282 GSKIVLTTRSVDVCDQ--------MDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 282 gs~iivTtR~~~v~~~--------~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
...+|+++.+..+... .+.. .+.+++|+.+++++++...+... ... +.-++..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 4445555555544432 1222 68999999999999999976543 121 12266779999999999998864
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.05 E-value=8.7e-09 Score=116.22 Aligned_cols=284 Identities=18% Similarity=0.187 Sum_probs=183.2
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHc
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRI 228 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l 228 (888)
..|-|.. +++.|... .+.+.+.|..++|.||||++.+..... ..-..+.|.+.. .+...++..+
T Consensus 20 ~~v~R~r----L~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 20 NYVVRPR----LLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccHH----HHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 3466664 45555542 478999999999999999999998732 334568999987 4455555555
Q ss_pred CCChh-----------hhcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCccc---hhhhCCCCCCCCCCcEEEEEecch
Q 046470 229 GFSEN-----------WWKKKSPEEKAVDISSILS--RKEFVLLLDDIWKPIN---LKDMGVPLQNLNAGSKIVLTTRSV 292 (888)
Q Consensus 229 ~~~~~-----------~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtR~~ 292 (888)
+...+ ..+..+...+...+..-+. .++..+||||-.-..+ -..+...+.....+-..|||||+.
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 41110 0123344445555555443 4689999999764321 122222233344578899999996
Q ss_pred hhhhc--cCC--ceeEcC----CCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCChh
Q 046470 293 DVCDQ--MDA--EKVEVS----CLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNIG 364 (888)
Q Consensus 293 ~v~~~--~~~--~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~ 364 (888)
.-+.. +.. ..++++ .|+.+|+-++|....+.. --+..++.+.+..+|-+-|+..++=.++.+.+.+
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 53221 111 133333 589999999999876432 1256789999999999999999998888444433
Q ss_pred HHHHHHHHHHhcccccCCchHHHHhhh-hhccccchHHHHHHHhhhccCCCCccccHHHHHHHHHHcCCCcCcchhHHHH
Q 046470 365 DWKRAIKKIRTSASKFSGMEEKVFSRL-KFSYDSLSDELRSCLLYCCLYPEDYKISKRELIDYWISEGFVDDFDDGWEFI 443 (888)
Q Consensus 365 ~w~~~~~~l~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~l 443 (888)
.-...+ .+....+..-| .=-++.||+++|..++-||+++.= -.+|+.. +.+.++|...+
T Consensus 245 q~~~~L----------sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~------Ltg~~ng~amL 304 (894)
T COG2909 245 QSLRGL----------SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNA------LTGEENGQAML 304 (894)
T ss_pred HHhhhc----------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHH------HhcCCcHHHHH
Confidence 222111 11112222222 224688999999999999998641 1334443 23445588999
Q ss_pred HHHHHhcccccc---CCcchhhhhHHHHHHHHHH
Q 046470 444 NDLLHACLLEEE---GDDHVKMHDMIREMSLWVA 474 (888)
Q Consensus 444 ~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~~~ 474 (888)
++|.+++|+-.. ...+|+.|.++.+|.+.-.
T Consensus 305 e~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 305 EELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred HHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 999999987643 6789999999999987544
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=1.4e-10 Score=123.74 Aligned_cols=195 Identities=28% Similarity=0.342 Sum_probs=135.8
Q ss_pred ccceEEEEecCCCccCCC-CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccC
Q 046470 502 EGAKRISLRGNRFDSLSE-IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSW 580 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~-~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 580 (888)
......+++.|++..+|. ...|..|..+.+..|.+..+|.. ++++..|.+|||+.|++..+|..++.|+ |+.|-+++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 344556778888877774 56677888888888888777766 7788888888888888888888887764 88888888
Q ss_pred CcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCC
Q 046470 581 TEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKH 660 (888)
Q Consensus 581 ~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 660 (888)
|+++.+|..++.+..|.+||.+.|.+ ..+|.. ++.+.+|+.|.+..|.... .+.++..|+
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei-~slpsq-l~~l~slr~l~vrRn~l~~-----------------lp~El~~Lp- 212 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQ-LGYLTSLRDLNVRRNHLED-----------------LPEELCSLP- 212 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhh-hhchHH-hhhHHHHHHHHHhhhhhhh-----------------CCHHHhCCc-
Confidence 88888888888888888888888865 667766 7888888888887665542 344555443
Q ss_pred CceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccC
Q 046470 661 LNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGF 740 (888)
Q Consensus 661 L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l 740 (888)
|..|+++.|++.. -+..+..|.+|++|-+.+|.+.+- +..+.. ....
T Consensus 213 Li~lDfScNkis~---------------------------iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~-----kGkV 259 (722)
T KOG0532|consen 213 LIRLDFSCNKISY---------------------------LPVDFRKMRHLQVLQLENNPLQSP-PAQICE-----KGKV 259 (722)
T ss_pred eeeeecccCceee---------------------------cchhhhhhhhheeeeeccCCCCCC-hHHHHh-----ccce
Confidence 5555555443221 122367788888888888877742 222111 0122
Q ss_pred CCccEEEEecC
Q 046470 741 RSLSIVSVENC 751 (888)
Q Consensus 741 ~~L~~L~L~~c 751 (888)
.=.++|+..-|
T Consensus 260 HIFKyL~~qA~ 270 (722)
T KOG0532|consen 260 HIFKYLSTQAC 270 (722)
T ss_pred eeeeeecchhc
Confidence 33456666666
No 37
>PF05729 NACHT: NACHT domain
Probab=98.90 E-value=9.9e-09 Score=99.40 Aligned_cols=134 Identities=21% Similarity=0.314 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCC----CCEEEEEEecc---------hHHHHHHHcCCChhhhcCCCHHHHHH
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHH----FDVVIWAAVST---------LQDDIGKRIGFSENWWKKKSPEEKAV 245 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~wv~~~~---------l~~~i~~~l~~~~~~~~~~~~~~~~~ 245 (888)
+++.|+|.+|+||||+++.++.... .... +...+|++.+. +.+.|..+.... ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHH---
Confidence 5789999999999999999998873 2222 45677777761 222233332211 111111
Q ss_pred HHHHH-hccCcEEEEEccCCCccc---------hhhhCCC-CCC-CCCCcEEEEEecchhh---hhccCCc-eeEcCCCC
Q 046470 246 DISSI-LSRKEFVLLLDDIWKPIN---------LKDMGVP-LQN-LNAGSKIVLTTRSVDV---CDQMDAE-KVEVSCLA 309 (888)
Q Consensus 246 ~l~~~-l~~k~~LlVlDdv~~~~~---------~~~l~~~-l~~-~~~gs~iivTtR~~~v---~~~~~~~-~~~l~~L~ 309 (888)
.+... -+.++++||+|++++... +..+... +.. ...+.+++||+|.... ....... .+++.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 12222 257899999999986432 1111111 221 2468999999999766 3334444 79999999
Q ss_pred hHHHHHHHHHHh
Q 046470 310 HDEAWKLFQKMV 321 (888)
Q Consensus 310 ~~~a~~Lf~~~~ 321 (888)
+++..+++.+.+
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 38
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.86 E-value=5.5e-08 Score=116.47 Aligned_cols=301 Identities=13% Similarity=0.177 Sum_probs=171.8
Q ss_pred ccchHHHHHHHHHHhhcC-CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEE------Eec---chHHHHHH
Q 046470 157 VVGQELLLYRVWKCITDQ-DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWA------AVS---TLQDDIGK 226 (888)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv------~~~---~l~~~i~~ 226 (888)
++||+.+++.+...+... .....++.+.|..|+|||+++++|.....+.++.|-...+- ..+ +..+++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 689999999999988763 34567999999999999999999999873322222111111 011 22222222
Q ss_pred Hc-------------------CCChhh--------------------hcCCCHHH-----HHHHHHHHh-ccCcEEEEEc
Q 046470 227 RI-------------------GFSENW--------------------WKKKSPEE-----KAVDISSIL-SRKEFVLLLD 261 (888)
Q Consensus 227 ~l-------------------~~~~~~--------------------~~~~~~~~-----~~~~l~~~l-~~k~~LlVlD 261 (888)
++ +..+.. ........ ....+..+. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 111100 00011111 112223333 3569999999
Q ss_pred cCC-Ccc-chhhhCCCCCCCC----CCcEEEE--Eecch-hhhhccCCc--eeEcCCCChHHHHHHHHHHhhcccCCCCC
Q 046470 262 DIW-KPI-NLKDMGVPLQNLN----AGSKIVL--TTRSV-DVCDQMDAE--KVEVSCLAHDEAWKLFQKMVERSTLDSHA 330 (888)
Q Consensus 262 dv~-~~~-~~~~l~~~l~~~~----~gs~iiv--TtR~~-~v~~~~~~~--~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~ 330 (888)
|+. -+. .+.-+........ .-..|.. |.+.. ......... .+.|.||+..+...+.....+... +
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 994 222 2221111110000 0112332 23322 112222222 899999999999999999887533 2
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHhccC------CChhHHHHHHHHHHhcccccCCchHHHHhhhhhccccchHHHHH
Q 046470 331 SIPELAKTLARECGGLPLALKTVGRAMKSR------SNIGDWKRAIKKIRTSASKFSGMEEKVFSRLKFSYDSLSDELRS 404 (888)
Q Consensus 331 ~~~~~~~~i~~~c~g~Plai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~ 404 (888)
...+....|+++..|+|+.+..+-..+... .+...|..-...+. . .+.-+.+...+..-.+.||...|.
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~-~~~~~~vv~~l~~rl~kL~~~t~~ 312 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----I-LATTDAVVEFLAARLQKLPGTTRE 312 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----C-chhhHHHHHHHHHHHhcCCHHHHH
Confidence 336889999999999999999999888764 33444543222211 1 122234666788889999999999
Q ss_pred HHhhhccCCCCccccHHHHHHHHHHcCCCcCcchhHHHHHHHHHhcccccc---------CCc-chhhhhHHHHHHHH
Q 046470 405 CLLYCCLYPEDYKISKRELIDYWISEGFVDDFDDGWEFINDLLHACLLEEE---------GDD-HVKMHDMIREMSLW 472 (888)
Q Consensus 405 cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~l~~L~~~~ll~~~---------~~~-~~~mHdlv~~~a~~ 472 (888)
.+...|++... |+...|...+-.- +...+...++.|.....+-.. ... +-..||.+++.|-.
T Consensus 313 Vl~~AA~iG~~--F~l~~La~l~~~~----~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 313 VLKAAACIGNR--FDLDTLAALAEDS----PALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYN 384 (849)
T ss_pred HHHHHHHhCcc--CCHHHHHHHHhhc----hHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhc
Confidence 99999998654 4555555554321 111144444444444333211 122 34789999988854
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.2e-09 Score=113.45 Aligned_cols=209 Identities=19% Similarity=0.209 Sum_probs=107.5
Q ss_pred CCCCchhhhhhccCCcccccc-hHHhcCCcccEEEcCCCCCcc---cChhhhcccCCCEEeccCCcccccCcc--cccCC
Q 046470 521 PTSPRLITLLLIANSIDEITD-GFFQSMSSLRVLSLGSNALSK---LPSGISSLVSLHHLDLSWTEITGLPQE--LKALE 594 (888)
Q Consensus 521 ~~~~~Lr~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~~~i~~---lp~~i~~L~~L~~L~L~~~~i~~Lp~~--i~~L~ 594 (888)
+++++||...|.++.+...+. +....|++++.||||+|-+.. +-.-...|++|+.|+|+.|.+.....+ -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456667777777666544432 335667777777777775442 233455667777777777665443221 22455
Q ss_pred ccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhH
Q 046470 595 KLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAV 674 (888)
Q Consensus 595 ~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 674 (888)
+|+.|.+++|.+...--......+++|+.|++..|..... ....-..++.|+.|+++.|....
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~----------------~~~~~~i~~~L~~LdLs~N~li~- 260 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI----------------KATSTKILQTLQELDLSNNNLID- 260 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce----------------ecchhhhhhHHhhccccCCcccc-
Confidence 6666666666543211111234556666666665532100 00111123334444444433222
Q ss_pred HhhhcCCccccceEEEEEeecCCCccccc-cccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCC
Q 046470 675 QKFFKYPKLVSITQSVVVYQCECPLFNVL-HLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEK 753 (888)
Q Consensus 675 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~l-~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 753 (888)
.... ....++.|+.|+++.+++.++..-...... ....|++|++|++..|+.
T Consensus 261 -------------------------~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~--kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 261 -------------------------FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD--KTHTFPKLEYLNISENNI 313 (505)
T ss_pred -------------------------cccccccccccchhhhhccccCcchhcCCCccchh--hhcccccceeeecccCcc
Confidence 2211 145567777777777766654322221000 013477888888877754
Q ss_pred --CCCCchhhhccCcceEeeec
Q 046470 754 --MKDLTWLVFVQNLKELEISR 773 (888)
Q Consensus 754 --l~~l~~l~~l~~L~~L~L~~ 773 (888)
...+..+..+++|+.|.+..
T Consensus 314 ~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 314 RDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccccchhhccchhhhhhccc
Confidence 33444455666777776554
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.82 E-value=4.5e-08 Score=99.54 Aligned_cols=152 Identities=15% Similarity=0.160 Sum_probs=95.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcE
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEF 256 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 256 (888)
..+.+.++|++|+|||+|++++++... .....+.|+.+.... .....+.+.++ +.-
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~--------------------~~~~~~~~~~~-~~d 93 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ--------------------YFSPAVLENLE-QQD 93 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh--------------------hhhHHHHhhcc-cCC
Confidence 346789999999999999999999862 122344566543110 00011122222 335
Q ss_pred EEEEccCCCc---cchhh-hCCCCCC-CCCCcEEEEE-ecc---------hhhhhccCCc-eeEcCCCChHHHHHHHHHH
Q 046470 257 VLLLDDIWKP---INLKD-MGVPLQN-LNAGSKIVLT-TRS---------VDVCDQMDAE-KVEVSCLAHDEAWKLFQKM 320 (888)
Q Consensus 257 LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivT-tR~---------~~v~~~~~~~-~~~l~~L~~~~a~~Lf~~~ 320 (888)
+|||||+|.. .+|+. +...+.. ...|..+||+ +.. ..+.+++... .+++++++.++.++++.+.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 8999999863 34442 2221211 1235556554 443 3566666666 8899999999999999999
Q ss_pred hhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHH
Q 046470 321 VERSTLDSHASIPELAKTLARECGGLPLALKTVGR 355 (888)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 355 (888)
+.......+ +++..-|++.+.|..-.+..+-.
T Consensus 174 a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 174 AYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 875443333 67888888888877655544443
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.80 E-value=3.8e-08 Score=102.07 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=94.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHH-HHHhccC
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDI-SSILSRK 254 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~k 254 (888)
+.+.....||++|+||||||+.+.... ...|...-=+.. ...+..+..+.- +....++
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~------------------gvkdlr~i~e~a~~~~~~gr 104 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS------------------GVKDLREIIEEARKNRLLGR 104 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc------------------cHHHHHHHHHHHHHHHhcCC
Confidence 567778899999999999999999876 455533211111 111222222222 2233588
Q ss_pred cEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE--Eecchhh----hhccCCceeEcCCCChHHHHHHHHHHhhccc-
Q 046470 255 EFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL--TTRSVDV----CDQMDAEKVEVSCLAHDEAWKLFQKMVERST- 325 (888)
Q Consensus 255 ~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--TtR~~~v----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~- 325 (888)
+.+|++|.|..- .+-+.+ ||...+|.-|+| ||.+... |-...+.++.+++|+.+|-.+++.+.+....
T Consensus 105 ~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~r 181 (436)
T COG2256 105 RTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEER 181 (436)
T ss_pred ceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhc
Confidence 999999999753 334433 555677888888 7776543 2222334899999999999999999543222
Q ss_pred -CC-CCCCh-HHHHHHHHHHhCCCcc
Q 046470 326 -LD-SHASI-PELAKTLARECGGLPL 348 (888)
Q Consensus 326 -~~-~~~~~-~~~~~~i~~~c~g~Pl 348 (888)
.. ....+ ++....+++.++|---
T Consensus 182 gl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 182 GLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred CCCcccccCCHHHHHHHHHhcCchHH
Confidence 11 11222 4567788888888543
No 42
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.75 E-value=1e-07 Score=97.52 Aligned_cols=167 Identities=18% Similarity=0.191 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCC
Q 046470 160 QELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKS 239 (888)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~ 239 (888)
.+..++.+.+++.. ...+.+.|+|++|+|||++|+.+++.. .......++++++.+....
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~~~--------------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQAD--------------- 81 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHHhH---------------
Confidence 45566777776544 456789999999999999999999876 2233445666665433211
Q ss_pred HHHHHHHHHHHhccCcEEEEEccCCCcc---ch-hhhCCCCCC-CCCCcEEEEEecch---------hhhhccCCc-eeE
Q 046470 240 PEEKAVDISSILSRKEFVLLLDDIWKPI---NL-KDMGVPLQN-LNAGSKIVLTTRSV---------DVCDQMDAE-KVE 304 (888)
Q Consensus 240 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~-~~~ 304 (888)
..+.+.+++ .-+||+||++... .| ..+...+.. ...+.++|+||+.. .+...+... .++
T Consensus 82 -----~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 82 -----PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred -----HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 011122222 3489999998543 22 223222211 12345788888752 223334323 789
Q ss_pred cCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHH
Q 046470 305 VSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGR 355 (888)
Q Consensus 305 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 355 (888)
+.+++.++-..++.+.+.......+ ++..+.|++.++|.|..+..+..
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999999999876543322222 56778888889998877766643
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=8.7e-10 Score=108.41 Aligned_cols=132 Identities=25% Similarity=0.375 Sum_probs=106.9
Q ss_pred ccccccceEEEEecCCCccCCCC-CCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEE
Q 046470 498 VEEWEGAKRISLRGNRFDSLSEI-PTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHL 576 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~l~~~-~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 576 (888)
...|+.+..+++++|.++.+... .-.|.+|.|+++.|.+..+.. +..+++|..||||+|.++.+-..=.+|-|.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 34578889999999999887654 346889999999999877765 778999999999999988776666678889999
Q ss_pred eccCCcccccCcccccCCccceeccccccccCCcc-ccccCCCCCCcEEeccCCCCCC
Q 046470 577 DLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIP-HQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 577 ~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
.|++|.|..| .++++|.+|..||+++|++ ..+. -.-|++|+.|++|.+.+|+...
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999988887 4688999999999999976 3332 1228999999999999887753
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.4e-09 Score=111.10 Aligned_cols=157 Identities=22% Similarity=0.127 Sum_probs=102.3
Q ss_pred cccccceEEEEecCCCccCC---CCCCCCchhhhhhccCCccccc--chHHhcCCcccEEEcCCCCCcccChh--hhccc
Q 046470 499 EEWEGAKRISLRGNRFDSLS---EIPTSPRLITLLLIANSIDEIT--DGFFQSMSSLRVLSLGSNALSKLPSG--ISSLV 571 (888)
Q Consensus 499 ~~~~~lr~L~l~~n~~~~l~---~~~~~~~Lr~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~~~i~~lp~~--i~~L~ 571 (888)
+++++++.+++.+......+ ....|++++.|+|+.|-+.... ..+...+++|+.|+|+.|.+....++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34567788888777666554 3567888888888888655442 34467788888888888876643222 23577
Q ss_pred CCCEEeccCCcccc--cCcccccCCccceeccccccc-cC-CccccccCCCCCCcEEeccCCCCCCcccccccCcccccc
Q 046470 572 SLHHLDLSWTEITG--LPQELKALEKLRYLNLEHAYM-LS-IIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDD 647 (888)
Q Consensus 572 ~L~~L~L~~~~i~~--Lp~~i~~L~~L~~L~l~~~~~-l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 647 (888)
+|+.|.|+.|.++. +-..+..+++|+.|++.+|.. +. ..+ ..-+..|++|++++|.....
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~------------- 261 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDF------------- 261 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCccccc-------------
Confidence 88888888887764 333456678888888888832 11 112 23466788888888776632
Q ss_pred hhhHHHHhhcCCCCceEEEEEechhh
Q 046470 648 AGLLMKELLGLKHLNFLSWSFRSSLA 673 (888)
Q Consensus 648 ~~~~~~~L~~L~~L~~L~l~~~~~~~ 673 (888)
........|+.|+.|+++.++..+
T Consensus 262 --~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 262 --DQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred --ccccccccccchhhhhccccCcch
Confidence 223344566677777776655444
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=5.5e-09 Score=102.90 Aligned_cols=106 Identities=23% Similarity=0.227 Sum_probs=60.9
Q ss_pred CCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecc
Q 046470 522 TSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNL 601 (888)
Q Consensus 522 ~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 601 (888)
.+..|.+|++++|.++.+..+ ..-.+.+|+|++|+|.|..+- ++..|++|+.||||+|.++++-..-.+|-|.++|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 344566666666666555544 455566666666666665553 255666666666666666555444455556666666
Q ss_pred ccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 602 EHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 602 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
.+|.+ +.+.. +++|-+|..|++.+|.+.
T Consensus 360 a~N~i-E~LSG--L~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 360 AQNKI-ETLSG--LRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhhH-hhhhh--hHhhhhheeccccccchh
Confidence 66633 44332 555666666666655543
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.64 E-value=4.3e-07 Score=101.14 Aligned_cols=174 Identities=21% Similarity=0.203 Sum_probs=103.8
Q ss_pred cccchHHHHHH---HHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCCh
Q 046470 156 TVVGQELLLYR---VWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSE 232 (888)
Q Consensus 156 ~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~ 232 (888)
++||++..+.. +..++.. ...+.+.++|++|+||||+|+.+++.. ...|. .++.+..
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~---~l~a~~~------------ 72 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGAT---DAPFE---ALSAVTS------------ 72 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEecccc------------
Confidence 57888887655 7777765 556678899999999999999998876 23331 1111100
Q ss_pred hhhcCCCHHHHHHHHHHH-hccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEE--Eecchh--hhhccCC--cee
Q 046470 233 NWWKKKSPEEKAVDISSI-LSRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVL--TTRSVD--VCDQMDA--EKV 303 (888)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv--TtR~~~--v~~~~~~--~~~ 303 (888)
...+..+........ ..+++.+|++|+++... ..+.+...+. .|..++| ||.+.. +...... ..+
T Consensus 73 ---~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~ 146 (413)
T PRK13342 73 ---GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVF 146 (413)
T ss_pred ---cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceee
Confidence 001111222222221 24578999999998642 3333333332 3555555 344422 1111111 378
Q ss_pred EcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHH
Q 046470 304 EVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGR 355 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 355 (888)
.+.+++.++.+.++.+.+.........--++....|++.|+|.+..+..+..
T Consensus 147 ~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 147 ELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999998764321100012256788899999999876654443
No 47
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.63 E-value=4.7e-06 Score=95.37 Aligned_cols=203 Identities=17% Similarity=0.122 Sum_probs=114.9
Q ss_pred CCcccchHHHHHHHHHHhhcC---CCCceEEEEEcCCCCcHHHHHHHHHhccccc--cCCCC--EEEEEEec------ch
Q 046470 154 DHTVVGQELLLYRVWKCITDQ---DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHE--QHHFD--VVIWAAVS------TL 220 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~~------~l 220 (888)
++.+.|||+++++|...|... .....++.|+|++|.|||+.++.|.+..... ..... .+++|.+. .+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 456889999999999998652 2333678899999999999999998876211 11111 34566653 56
Q ss_pred HHHHHHHcCCChhhhcCCCHHHHHHHHHHHhc---cCcEEEEEccCCCcc--chhhhCCCCC-CCCCCcEEEE--Eecc-
Q 046470 221 QDDIGKRIGFSENWWKKKSPEEKAVDISSILS---RKEFVLLLDDIWKPI--NLKDMGVPLQ-NLNAGSKIVL--TTRS- 291 (888)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~iiv--TtR~- 291 (888)
...|..++..... .......+....+...+. +...+||||+++... .-+.+...+. ....+++|+| .|..
T Consensus 834 YqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 7777777732211 122233344555555442 224699999997532 1111111111 1123555544 3332
Q ss_pred -------hhhhhccCCceeEcCCCChHHHHHHHHHHhhcccCCCC-CChHHHHHHHHHHhCCCccHHHHHHHHh
Q 046470 292 -------VDVCDQMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSH-ASIPELAKTLARECGGLPLALKTVGRAM 357 (888)
Q Consensus 292 -------~~v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~g~Plai~~~~~~l 357 (888)
..+...++...+...|++.++-.+++.+++.......+ ..++-+|+.++...|..-.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 22233344335777999999999999999864321111 1122233333333344556666654444
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=1.8e-06 Score=98.22 Aligned_cols=191 Identities=15% Similarity=0.184 Sum_probs=113.1
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHH-----
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKR----- 227 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~----- 227 (888)
.++||.+..++.|.+++..+ .-.+.+.++|..|+||||+|+.+.+... -...++. ..+. .....|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~---~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTS---QPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCC---CCCcccHHHHHHhcCCCceE
Confidence 35899999999999998762 2245667999999999999999888761 1111100 0000 011111100
Q ss_pred cCCChhhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecch-hhhhccCC
Q 046470 228 IGFSENWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRSV-DVCDQMDA 300 (888)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~ 300 (888)
+.+.. ......+++...+... ..++.-++|||+++... .+..+...+.....+.++|+||.+. .+..-.-.
T Consensus 91 iEIDA--as~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS 168 (830)
T PRK07003 91 VEMDA--ASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS 168 (830)
T ss_pred EEecc--cccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh
Confidence 00000 0112223332222221 13455689999998653 3555544454444577877777763 33222222
Q ss_pred --ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc-cHHHHHHH
Q 046470 301 --EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP-LALKTVGR 355 (888)
Q Consensus 301 --~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~ 355 (888)
..+++++++.++..+.+.+.+..+....+ .+..+.|++.++|.. -|+..+-.
T Consensus 169 RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 169 RCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred heEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 28999999999999999988765443322 677889999998865 45555443
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=1.2e-08 Score=114.17 Aligned_cols=104 Identities=33% Similarity=0.452 Sum_probs=50.0
Q ss_pred CCchhhhhhccCCcccccchHHhcCC-cccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecc
Q 046470 523 SPRLITLLLIANSIDEITDGFFQSMS-SLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNL 601 (888)
Q Consensus 523 ~~~Lr~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 601 (888)
.+.+..|.+.+|.++.+++. ...+. +|+.|++++|.+..+|..++.+++|+.|++++|+++++|...+.+++|+.|++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34445555555555444442 22232 45555555555555554555555555555555555555544445555555555
Q ss_pred ccccccCCccccccCCCCCCcEEeccCC
Q 046470 602 EHAYMLSIIPHQLISGFSKLEVLRLLGC 629 (888)
Q Consensus 602 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 629 (888)
++|++ ..+|.. +..+..|++|.+.++
T Consensus 194 s~N~i-~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 194 SGNKI-SDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred cCCcc-ccCchh-hhhhhhhhhhhhcCC
Confidence 55533 444432 233344555555444
No 50
>PF13173 AAA_14: AAA domain
Probab=98.59 E-value=1.5e-07 Score=86.23 Aligned_cols=119 Identities=24% Similarity=0.273 Sum_probs=81.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEE
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFV 257 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 257 (888)
.+++.|.|+.|+||||++++++.+. . ....+++++..+....-.. ..+ ..+.+.+....++.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~ 64 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLA------------DPD-LLEYFLELIKPGKKY 64 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHh------------hhh-hHHHHHHhhccCCcE
Confidence 4689999999999999999999886 2 3445666666522221000 000 223344444457889
Q ss_pred EEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhhhhc-----cCCc--eeEcCCCChHHH
Q 046470 258 LLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDVCDQ-----MDAE--KVEVSCLAHDEA 313 (888)
Q Consensus 258 lVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-----~~~~--~~~l~~L~~~~a 313 (888)
|+||++....+|......+.+.....+|++|+.+...... .... .+++.||+..|-
T Consensus 65 i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 65 IFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 9999999988888876666666667899999998665422 2223 789999998773
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=6.8e-09 Score=111.15 Aligned_cols=130 Identities=22% Similarity=0.338 Sum_probs=68.8
Q ss_pred ccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEe
Q 046470 498 VEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLD 577 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~ 577 (888)
+..+..+..++++.|++..+|.-...--|++|.+++|+++.+|+. ++....|..||.+.|.+..+|..++.+..|+.|+
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 334445555555555555554322222355555555555555554 4455555555555555555555555555555555
Q ss_pred ccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCC
Q 046470 578 LSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 578 L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 631 (888)
++.|++..+|..++. -.|..||++.|++ ..+|-. +.+|+.|++|-+.+|..
T Consensus 196 vrRn~l~~lp~El~~-LpLi~lDfScNki-s~iPv~-fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCS-LPLIRLDFSCNKI-SYLPVD-FRKMRHLQVLQLENNPL 246 (722)
T ss_pred HhhhhhhhCCHHHhC-CceeeeecccCce-eecchh-hhhhhhheeeeeccCCC
Confidence 555555555555552 2355555555533 445554 55555555555554444
No 52
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.55 E-value=1.7e-06 Score=94.61 Aligned_cols=191 Identities=14% Similarity=0.150 Sum_probs=110.3
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCC-EEEEEEecchHHHHHHHcCCChh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD-VVIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
..++|++..++.+..++.. +..+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++........+.....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhcchhhhhcCcc
Confidence 4689999999999998876 4556788999999999999999988762 12222 23445544332221111110000
Q ss_pred ---hh-----cCCCHHHHHHHH-HHHh-----ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecch-hhhh
Q 046470 234 ---WW-----KKKSPEEKAVDI-SSIL-----SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRSV-DVCD 296 (888)
Q Consensus 234 ---~~-----~~~~~~~~~~~l-~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~ 296 (888)
.. ...........+ .... .+.+-+||+||+.... ....+...+.......++|+||.+. .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00 000111112211 1111 1345589999997542 2222322232233456777777542 2222
Q ss_pred ccCCc--eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 297 QMDAE--KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 297 ~~~~~--~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
..... .+++.+++.++....+.+.+.......+ .+.+..+++.++|.+-.+..
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22222 7889999999999999887765442322 67888999999887655443
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=2.3e-09 Score=110.65 Aligned_cols=291 Identities=21% Similarity=0.160 Sum_probs=163.5
Q ss_pred CchhhhhhccCCcccc--cchHHhcCCcccEEEcCCC-CCcc--cChhhhcccCCCEEeccCC-cccc--cCcccccCCc
Q 046470 524 PRLITLLLIANSIDEI--TDGFFQSMSSLRVLSLGSN-ALSK--LPSGISSLVSLHHLDLSWT-EITG--LPQELKALEK 595 (888)
Q Consensus 524 ~~Lr~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~~-~i~~--lp~~i~~L~~L~~L~L~~~-~i~~--Lp~~i~~L~~ 595 (888)
..|+.|.+.++.-... ...+...++++..|++.+| +++. +-.--..+.+|++|++..| .|+. |-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3567777877762222 1234567888988888888 4442 2222346888999999886 6666 2223567889
Q ss_pred cceeccccccccCCcc-ccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHh-hcCCCCceEEEEEechhh
Q 046470 596 LRYLNLEHAYMLSIIP-HQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKEL-LGLKHLNFLSWSFRSSLA 673 (888)
Q Consensus 596 L~~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~~L~~L~l~~~~~~~ 673 (888)
|++|++++|.....-. .....++.+|+.+...||.-.. ...+... .....+-.+++..+....
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~---------------le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE---------------LEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc---------------HHHHHHHhccChHhhccchhhhcccc
Confidence 9999999986433210 1124566777777776765431 1111111 111112222222221111
Q ss_pred HHhhhcCCccccceEEEEEeecCCCcccccc--ccccCCcceEEeec-CCcceeeecCCccccccccccCCCccEEEEec
Q 046470 674 VQKFFKYPKLVSITQSVVVYQCECPLFNVLH--LAYMENLQELHLED-SDLEEMRIDGPEEVKKLFQSGFRSLSIVSVEN 750 (888)
Q Consensus 674 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~--l~~l~~L~~L~l~~-~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 750 (888)
-..+......+..++.|..+++......++. ..++++|+.|-+.+ ..+.+.....+. .+.+.|+.+++.+
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-------rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-------RNCPHLERLDLEE 355 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-------cCChhhhhhcccc
Confidence 1222233333456677776666543222222 34567888888777 223332222222 3567888888888
Q ss_pred CCCCCCC--chh-hhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCC-CCCCCCC
Q 046470 751 CEKMKDL--TWL-VFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYP-NPLPFPK 826 (888)
Q Consensus 751 c~~l~~l--~~l-~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~ 826 (888)
|....+- ..+ .++|.|+.|.|+.|..+++...... . ........|+.|.|++||.+++-.. ....+++
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l-~-------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL-S-------SSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh-h-------hccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 8544332 122 3678888888888887776522100 0 1334566788888888887655332 2334778
Q ss_pred ccEEEecCCCCCCCCCCC
Q 046470 827 LKKIQIYSCPELKKLPLN 844 (888)
Q Consensus 827 L~~L~i~~C~~L~~lP~~ 844 (888)
|+.+++.+|...++=|..
T Consensus 428 Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAIS 445 (483)
T ss_pred cceeeeechhhhhhhhhH
Confidence 888888888777664443
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.53 E-value=1.5e-05 Score=92.63 Aligned_cols=195 Identities=16% Similarity=0.113 Sum_probs=115.6
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCC---CEEEEEEec--c-------hHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHF---DVVIWAAVS--T-------LQD 222 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~--~-------l~~ 222 (888)
+.++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++.. .....+ ...-|+.+. . +..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 4589999999988887754 455679999999999999999998765 222222 112344332 1 111
Q ss_pred HH---------------HHHcCCChh----------------hhcCCCHHHHHHHHHHHhccCcEEEEEccCCCc--cch
Q 046470 223 DI---------------GKRIGFSEN----------------WWKKKSPEEKAVDISSILSRKEFVLLLDDIWKP--INL 269 (888)
Q Consensus 223 ~i---------------~~~l~~~~~----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~ 269 (888)
.+ +...+.... .... -....+..+.+.++++++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~-Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGE-LDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEecccc-CCHHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 11 111111100 0011 1233566788888888888887777654 357
Q ss_pred hhhCCCCCCCCCCcEEEE--Eecchh-hhhccCC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhC
Q 046470 270 KDMGVPLQNLNAGSKIVL--TTRSVD-VCDQMDA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECG 344 (888)
Q Consensus 270 ~~l~~~l~~~~~gs~iiv--TtR~~~-v~~~~~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~ 344 (888)
..+...+....+...|++ ||++.. +...... ..+.+.+++.+|.+.++.+.+.......+ ++..+.|++.+.
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~ 386 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTI 386 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCC
Confidence 776655555555555555 566533 2211112 26789999999999999998764321111 455556666555
Q ss_pred CCccHHHHHHHH
Q 046470 345 GLPLALKTVGRA 356 (888)
Q Consensus 345 g~Plai~~~~~~ 356 (888)
.-+-|+..++.+
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 445566555544
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=5.1e-08 Score=108.96 Aligned_cols=130 Identities=27% Similarity=0.377 Sum_probs=110.0
Q ss_pred cccccceEEEEecCCCccCCCCCCCC--chhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEE
Q 046470 499 EEWEGAKRISLRGNRFDSLSEIPTSP--RLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHL 576 (888)
Q Consensus 499 ~~~~~lr~L~l~~n~~~~l~~~~~~~--~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 576 (888)
...+.+..+++.+|.+..++...... +|+.|++++|.+..++.. +..++.|+.|++++|++..+|...+.+.+|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 34467899999999999998866654 899999999999888633 789999999999999999999888899999999
Q ss_pred eccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCC
Q 046470 577 DLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 577 ~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 631 (888)
++++|+++.+|..+..+..|++|.+++|.... .+.. +.++.++..|.+.++..
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~-~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSS-LSNLKNLSGLELSNNKL 244 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCccee-cchh-hhhcccccccccCCcee
Confidence 99999999999988888889999999996433 3433 77888888888665544
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.51 E-value=4.4e-09 Score=108.68 Aligned_cols=296 Identities=19% Similarity=0.236 Sum_probs=187.5
Q ss_pred cceEEEEecCCCccCCC----CCCCCchhhhhhccCC-ccccc-chHHhcCCcccEEEcCCC-CCccc--ChhhhcccCC
Q 046470 503 GAKRISLRGNRFDSLSE----IPTSPRLITLLLIANS-IDEIT-DGFFQSMSSLRVLSLGSN-ALSKL--PSGISSLVSL 573 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~----~~~~~~Lr~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~~-~i~~l--p~~i~~L~~L 573 (888)
.++.+++.+..-..... ...|+++..|.+.++. ++... .++-..++.|++|+|..| .|+.. -.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57778888765544332 3678999999998886 32222 222357899999999996 66633 2244578999
Q ss_pred CEEeccCC-cccc--cCcccccCCccceeccccccccCCcccccc----CCCCCCcEEeccCCCCCCcccccccCccccc
Q 046470 574 HHLDLSWT-EITG--LPQELKALEKLRYLNLEHAYMLSIIPHQLI----SGFSKLEVLRLLGCGSNCVTVTEEEGNVLCD 646 (888)
Q Consensus 574 ~~L~L~~~-~i~~--Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i----~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 646 (888)
+||++++| .|+. +-.-..++.+|+.+.+.||. ..+...+ ..+.-+-++++.+|....
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lT------------- 282 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLT------------- 282 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhcccc-------------
Confidence 99999999 5665 43445677788888888883 3332222 344556667777775442
Q ss_pred chhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccc-c-ccccCCcceEEeecCCccee
Q 046470 647 DAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVL-H-LAYMENLQELHLEDSDLEEM 724 (888)
Q Consensus 647 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l-~-l~~l~~L~~L~l~~~~l~~l 724 (888)
+......-.....|+.+..+......-..+.....-+.+|+.+.+..|..-...-+ . -.+++.|+.+++........
T Consensus 283 -D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 283 -DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred -chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 11122222345677777776554433333334444457889999888874221111 1 24578899988877443211
Q ss_pred e-ecCCccccccccccCCCccEEEEecCCCCCCC--chh----hhccCcceEeeecccccchhcccccccccccccCccC
Q 046470 725 R-IDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL--TWL----VFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEH 797 (888)
Q Consensus 725 ~-~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l----~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~ 797 (888)
. +... ..+++.|+.|.|+.|...++. ..+ ..+..|+.|.|++|+.+++-.. ..+
T Consensus 362 ~tL~sl-------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L------------e~l 422 (483)
T KOG4341|consen 362 GTLASL-------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL------------EHL 422 (483)
T ss_pred hhHhhh-------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH------------HHH
Confidence 1 1111 136899999999999776654 122 3567899999999998876533 356
Q ss_pred ccccccceeeccccccccccCCCC--CCCCCccEEEecC
Q 046470 798 NFFAQLEALNIFNNVNLKSIYPNP--LPFPKLKKIQIYS 834 (888)
Q Consensus 798 ~~~p~L~~L~L~~~~~L~~i~~~~--~~~p~L~~L~i~~ 834 (888)
...++|+.+.+.+|.....-+... ..+|+++......
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 678899999999998776544332 2366666655543
No 57
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.51 E-value=8.1e-06 Score=83.20 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=81.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec------chHHHHHHHcCCChhhhcCCCHHHHHHHHHH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS------TLQDDIGKRIGFSENWWKKKSPEEKAVDISS 249 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 249 (888)
+..+.+.+||++|+||||||+.+.... +.+- ..+|..| +-.++|.++-. =..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq-----------------~~~ 217 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQ-----------------NEK 217 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHH-----------------HHH
Confidence 678889999999999999999999886 3331 4455555 11222222110 012
Q ss_pred HhccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE--Eecchhh----hhccCCceeEcCCCChHHHHHHHHHHh
Q 046470 250 ILSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL--TTRSVDV----CDQMDAEKVEVSCLAHDEAWKLFQKMV 321 (888)
Q Consensus 250 ~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--TtR~~~v----~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 321 (888)
.+.++|.+|++|.|..- .+-+. .||...+|+-++| ||.+... +-.....++.|++|+.++...++.+..
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 34578999999999753 33332 3677788988887 7777554 122233388999999999999998854
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=4.2e-08 Score=76.56 Aligned_cols=57 Identities=37% Similarity=0.638 Sum_probs=34.1
Q ss_pred cccEEEcCCCCCcccC-hhhhcccCCCEEeccCCcccccC-cccccCCccceecccccc
Q 046470 549 SLRVLSLGSNALSKLP-SGISSLVSLHHLDLSWTEITGLP-QELKALEKLRYLNLEHAY 605 (888)
Q Consensus 549 ~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~l~~~~ 605 (888)
+|++|++++|.++.+| ..+..+++|++|++++|.++.+| ..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4566666666666664 34555666666666666666653 345666666666666653
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=8.8e-06 Score=91.86 Aligned_cols=191 Identities=13% Similarity=0.102 Sum_probs=110.4
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEE-EEEEecchHHHHHHHcCCCh-
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVV-IWAAVSTLQDDIGKRIGFSE- 232 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~-~wv~~~~l~~~i~~~l~~~~- 232 (888)
..+||.+...+.+..++..+ .-.+.+.++|+.|+||||+|+.+++... -....+.. +=.| ..-+.|...-...-
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~~~pCg~C--~sC~~I~~g~hpDvi 90 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVTSTPCEVC--ATCKAVNEGRFIDLI 90 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCCCCCCccC--HHHHHHhcCCCCceE
Confidence 35899999999999999763 2246789999999999999999988761 11100000 0000 00111110000000
Q ss_pred --hhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecch-hhhhc--cCCc
Q 046470 233 --NWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSV-DVCDQ--MDAE 301 (888)
Q Consensus 233 --~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~--~~~~ 301 (888)
+.......++....+... ..+++-++|+|+++.. ..+..+...+.....+.++|++|.+. .+... ....
T Consensus 91 EIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq 170 (702)
T PRK14960 91 EIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCL 170 (702)
T ss_pred EecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhh
Confidence 000112233322222111 2356679999999864 33444444444434566777777653 23211 1123
Q ss_pred eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 302 KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 302 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
.+++.+++.++..+.+.+.+.......+ .+....|++.++|.+-.+..
T Consensus 171 ~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 171 QFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred eeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 8999999999999999888765442222 56788999999997754433
No 60
>PRK08727 hypothetical protein; Validated
Probab=98.48 E-value=1.9e-06 Score=87.76 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=98.6
Q ss_pred cchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcC
Q 046470 158 VGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKK 237 (888)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~ 237 (888)
+|-...+..+.....+ .....+.|+|..|+|||+|++++++... .....+.++.+.+....+.
T Consensus 23 ~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~~~~~~~------------ 85 (233)
T PRK08727 23 AAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQAAAGRLR------------ 85 (233)
T ss_pred CCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHHhhhhHH------------
Confidence 4444444444433333 3345699999999999999999998862 2223455665442221111
Q ss_pred CCHHHHHHHHHHHhccCcEEEEEccCCCcc---chhhhCCCCCC--CCCCcEEEEEecc---------hhhhhccCCc-e
Q 046470 238 KSPEEKAVDISSILSRKEFVLLLDDIWKPI---NLKDMGVPLQN--LNAGSKIVLTTRS---------VDVCDQMDAE-K 302 (888)
Q Consensus 238 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~l~~--~~~gs~iivTtR~---------~~v~~~~~~~-~ 302 (888)
...+.+ .+.-+||+||+.... .|......+.+ ...|..||+|++. .++.+++... .
T Consensus 86 --------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~ 156 (233)
T PRK08727 86 --------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIR 156 (233)
T ss_pred --------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCce
Confidence 111122 233589999997432 23221111211 1246679999985 2334455445 8
Q ss_pred eEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 303 VEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 303 ~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
+++++++.++-..++.+++.......+ ++....|++.++|-.-.+
T Consensus 157 ~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 157 IGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 899999999999999987764332333 677888888887655444
No 61
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=2e-07 Score=109.09 Aligned_cols=108 Identities=23% Similarity=0.408 Sum_probs=88.5
Q ss_pred chhhhhhccCCcccccchHHhcCCcccEEEcCCCCCc-ccChhhhcccCCCEEeccCCcccc-cCcccccCCccceeccc
Q 046470 525 RLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALS-KLPSGISSLVSLHHLDLSWTEITG-LPQELKALEKLRYLNLE 602 (888)
Q Consensus 525 ~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~i~~L~~L~~L~l~ 602 (888)
.++.|+|++|.+....+..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|+++. +|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888887666666889999999999999887 778889999999999999998885 78889999999999999
Q ss_pred cccccCCccccccCC-CCCCcEEeccCCCCCC
Q 046470 603 HAYMLSIIPHQLISG-FSKLEVLRLLGCGSNC 633 (888)
Q Consensus 603 ~~~~l~~lp~~~i~~-L~~L~~L~l~~~~~~~ 633 (888)
+|++...+|.. ++. +.++..+++.+|...+
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcccc
Confidence 99887788876 443 4567788888776554
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=1.2e-08 Score=103.40 Aligned_cols=241 Identities=20% Similarity=0.212 Sum_probs=131.2
Q ss_pred HhcCCcccEEEcCCCCCc-----ccChhhhcccCCCEEeccCC---c-ccccCcc-------cccCCccceecccccccc
Q 046470 544 FQSMSSLRVLSLGSNALS-----KLPSGISSLVSLHHLDLSWT---E-ITGLPQE-------LKALEKLRYLNLEHAYML 607 (888)
Q Consensus 544 ~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~---~-i~~Lp~~-------i~~L~~L~~L~l~~~~~l 607 (888)
...+..+.+++||+|.+. .+-..+.+.++|+..+++.- + ..++|+. +-..++|++||||.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 445677788888888765 23445666777777777753 1 1224443 445668888888888664
Q ss_pred CCccc---cccCCCCCCcEEeccCCCCCCcccccccCcccccchhhH----HHH------hhcCCCCceEEEEEechhhH
Q 046470 608 SIIPH---QLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLL----MKE------LLGLKHLNFLSWSFRSSLAV 674 (888)
Q Consensus 608 ~~lp~---~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------L~~L~~L~~L~l~~~~~~~~ 674 (888)
..-++ .++.++++|++|++.+|+.... .... +.+ .++-++|+.+..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-------------ag~~l~~al~~l~~~kk~~~~~~Lrv~i~-------- 164 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPE-------------AGGRLGRALFELAVNKKAASKPKLRVFIC-------- 164 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChh-------------HHHHHHHHHHHHHHHhccCCCcceEEEEe--------
Confidence 44433 2367789999999998876521 1111 111 122233444333
Q ss_pred HhhhcCCccccceEEEEEeecCCCcccc----ccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEec
Q 046470 675 QKFFKYPKLVSITQSVVVYQCECPLFNV----LHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVEN 750 (888)
Q Consensus 675 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~----l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 750 (888)
.++...+... ..+..++.|+.+.+..|.+.. .... ........+++|+.|+|..
T Consensus 165 ------------------~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~---eG~~-al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 165 ------------------GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP---EGVT-ALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred ------------------eccccccccHHHHHHHHHhccccceEEEecccccC---chhH-HHHHHHHhCCcceeeeccc
Confidence 3333211111 114555777777777766542 2110 0001113577788888877
Q ss_pred CCCCCC----C-chhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccc-----cCCC
Q 046470 751 CEKMKD----L-TWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKS-----IYPN 820 (888)
Q Consensus 751 c~~l~~----l-~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~-----i~~~ 820 (888)
|..-.. + ..+..+|+|+.|++++|. +++-....... .....+|+|+.|.+.+|. ++. +...
T Consensus 223 Ntft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~-------al~~~~p~L~vl~l~gNe-It~da~~~la~~ 293 (382)
T KOG1909|consen 223 NTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVD-------ALKESAPSLEVLELAGNE-ITRDAALALAAC 293 (382)
T ss_pred chhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHH-------HHhccCCCCceeccCcch-hHHHHHHHHHHH
Confidence 743221 1 135567778888888876 33221111100 012347888888887773 221 1112
Q ss_pred CCCCCCccEEEecCCC
Q 046470 821 PLPFPKLKKIQIYSCP 836 (888)
Q Consensus 821 ~~~~p~L~~L~i~~C~ 836 (888)
....|.|.+|.+.+|.
T Consensus 294 ~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhcchhhHHhcCCccc
Confidence 2236888888888874
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=3e-08 Score=110.93 Aligned_cols=213 Identities=24% Similarity=0.276 Sum_probs=109.8
Q ss_pred CCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecc
Q 046470 522 TSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNL 601 (888)
Q Consensus 522 ~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 601 (888)
.+..+..+.+..|.+..+... +..+++|..|++.+|.|..+...+..+.+|++|++++|.|+.+. .+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 344555555555555442221 45566777777777777666544666777777777777766663 3556666777777
Q ss_pred ccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHH--hhcCCCCceEEEEEechhhHHhhhc
Q 046470 602 EHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKE--LLGLKHLNFLSWSFRSSLAVQKFFK 679 (888)
Q Consensus 602 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~~L~~L~l~~~~~~~~~~~~~ 679 (888)
.+|.+ ..++. +..+++|+.+++.+|.+.. +.. +..+.+|+.+.+..+.......+..
T Consensus 148 ~~N~i-~~~~~--~~~l~~L~~l~l~~n~i~~------------------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~ 206 (414)
T KOG0531|consen 148 SGNLI-SDISG--LESLKSLKLLDLSYNRIVD------------------IENDELSELISLEELDLGGNSIREIEGLDL 206 (414)
T ss_pred ccCcc-hhccC--CccchhhhcccCCcchhhh------------------hhhhhhhhccchHHHhccCCchhcccchHH
Confidence 77754 44443 5556677777776665541 122 3455555555555544433322211
Q ss_pred CCccccceEEEEEeecCCCccccccccccC--CcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCC
Q 046470 680 YPKLVSITQSVVVYQCECPLFNVLHLAYME--NLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL 757 (888)
Q Consensus 680 ~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~--~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 757 (888)
.. .+..+.+..+....... +..+. +|+.+++.+|.+.... ... ..+.++..|++.++ .+..+
T Consensus 207 ~~----~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~--------~~~~~l~~l~~~~n-~~~~~ 270 (414)
T KOG0531|consen 207 LK----KLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EGL--------ENLKNLPVLDLSSN-RISNL 270 (414)
T ss_pred HH----HHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc-ccc--------cccccccccchhhc-ccccc
Confidence 11 11111111111111111 11112 3677777777666431 111 13667777777666 34444
Q ss_pred chhhhccCcceEeeec
Q 046470 758 TWLVFVQNLKELEISR 773 (888)
Q Consensus 758 ~~l~~l~~L~~L~L~~ 773 (888)
..+...+.+..+...+
T Consensus 271 ~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 271 EGLERLPKLSELWLND 286 (414)
T ss_pred ccccccchHHHhccCc
Confidence 4444455555555554
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=98.42 E-value=2.4e-06 Score=91.81 Aligned_cols=170 Identities=17% Similarity=0.194 Sum_probs=102.4
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCE-EEEEEecchHHHHHHHcCCChh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDV-VIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
.+++|.+..++.+..++.. +..+.+.++|++|+||||+|+.+++... ...|.. ++-+..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~s--------------- 73 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNAS--------------- 73 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeeccc---------------
Confidence 3578999888888887765 4556678999999999999999988751 122211 1111111
Q ss_pred hhcCCCHHHHHHHHHHHh-------ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecc-hhhhhccC--Cc
Q 046470 234 WWKKKSPEEKAVDISSIL-------SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMD--AE 301 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~--~~ 301 (888)
+....+.....+..+. .++.-++||||++... ....+...+......+++++++.. ..+..... ..
T Consensus 74 --d~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 74 --DDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred --ccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 1111122222222211 2356799999998642 222232222222345677776644 22221111 12
Q ss_pred eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc
Q 046470 302 KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL 348 (888)
Q Consensus 302 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 348 (888)
.+++.+++.++....+.+.+.......+ ++....|++.++|..-
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMR 195 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 7899999999999999888765443332 5678899999988653
No 65
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.42 E-value=2.8e-06 Score=85.47 Aligned_cols=180 Identities=21% Similarity=0.289 Sum_probs=104.2
Q ss_pred cccch-HHHHHHHHHHhhc-CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChh
Q 046470 156 TVVGQ-ELLLYRVWKCITD-QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 156 ~~vGr-~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
.++|. .+..-.....+.+ .+.....+.|+|..|+|||.|.+++++.. .....-..+++++..+....+...+..
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~-~~~~~~~~v~y~~~~~f~~~~~~~~~~--- 85 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA-QKQHPGKRVVYLSAEEFIREFADALRD--- 85 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH-HHHCTTS-EEEEEHHHHHHHHHHHHHT---
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH-HhccccccceeecHHHHHHHHHHHHHc---
Confidence 34564 2223333344433 23345678999999999999999999987 222233357788877777777665532
Q ss_pred hhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc---hhh-hCCCCC-CCCCCcEEEEEecch---------hhhhccC
Q 046470 234 WWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN---LKD-MGVPLQ-NLNAGSKIVLTTRSV---------DVCDQMD 299 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~-l~~~l~-~~~~gs~iivTtR~~---------~v~~~~~ 299 (888)
... ..+.+.++ .-=+|++||++.... |.+ +...+. -...|-+||+|++.. ++.+++.
T Consensus 86 ----~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 86 ----GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp ----TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred ----ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh
Confidence 112 23344444 345889999976422 222 111111 013466899999652 2344455
Q ss_pred Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHH
Q 046470 300 AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALK 351 (888)
Q Consensus 300 ~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 351 (888)
.. .+++.+++.++-.+++.+.+.......+ ++++.-|++.+.+..-.+.
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp CSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHH
T ss_pred hcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHH
Confidence 55 8999999999999999999876553333 6777777777665544433
No 66
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=5.6e-06 Score=88.84 Aligned_cols=174 Identities=14% Similarity=0.199 Sum_probs=112.5
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccc---cccCCCCEEEEEEecchHHHHHHHcCCCh
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFC---HEQHHFDVVIWAAVSTLQDDIGKRIGFSE 232 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~---~~~~~f~~~~wv~~~~l~~~i~~~l~~~~ 232 (888)
.++|.+..++.+.+++..+ .-.+.+.++|+.|+||||+|+.+++..- ....|+|...|.... +
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~-------------~ 70 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN-------------K 70 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-------------C
Confidence 5789999999999998762 2346778999999999999999988641 124567766654321 0
Q ss_pred hhhcCCCHHHHHHHHH---H-HhccCcEEEEEccCC--CccchhhhCCCCCCCCCCcEEEEEecchhh-hhccC--Ccee
Q 046470 233 NWWKKKSPEEKAVDIS---S-ILSRKEFVLLLDDIW--KPINLKDMGVPLQNLNAGSKIVLTTRSVDV-CDQMD--AEKV 303 (888)
Q Consensus 233 ~~~~~~~~~~~~~~l~---~-~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~~--~~~~ 303 (888)
.....+++.+.+. . -..+++-++|+|+++ +...+..+...+.....++.+|++|.+.+. ..-.. +..+
T Consensus 71 ---~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 71 ---KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred ---CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 1112222222211 1 112455567777765 445577776667666678888888866442 22112 2388
Q ss_pred EcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 304 EVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
++.+++.++....+.+..... -++.++.++..++|.|.-+...
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999988887654311 1455778899999998765433
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=5.5e-06 Score=90.51 Aligned_cols=188 Identities=14% Similarity=0.186 Sum_probs=108.0
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCE-EEEEEecchHHHHHHHcCCCh-
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDV-VIWAAVSTLQDDIGKRIGFSE- 232 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~l~~~i~~~l~~~~- 232 (888)
.+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+.+... -...... -...| ..-..+........
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~~~pc~~c--~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGITSNPCRKC--IICKEIEKGLCLDLI 91 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCC--HHHHHHhcCCCCceE
Confidence 46899999999998888762 2345678999999999999999988761 1100000 00000 00111111000000
Q ss_pred --hhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecc-hhhhhccCC--
Q 046470 233 --NWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMDA-- 300 (888)
Q Consensus 233 --~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~-- 300 (888)
+.......++. ..+.+.+ .+++-++|+|+++... .+..+...+.......++|++|.+ ..+......
T Consensus 92 ~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc 170 (363)
T PRK14961 92 EIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRC 170 (363)
T ss_pred EecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhc
Confidence 00001122222 2222222 2445699999998653 355554445444456677776654 333322222
Q ss_pred ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 301 EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 301 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
..+++.+++.++..+.+.+.+.......+ ++.+..|++.++|.|-.+
T Consensus 171 ~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 38899999999999988887654332222 567788999999988543
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=2.2e-06 Score=96.63 Aligned_cols=191 Identities=17% Similarity=0.132 Sum_probs=114.8
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecc--hHHH---HHHHc
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVST--LQDD---IGKRI 228 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--l~~~---i~~~l 228 (888)
.+++|.+..++.+..++.. +.. ..+.++|++|+||||+|+.+++.. .-.+.+...+|.|.+. +... ....+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred HHhcChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 3589999999999888876 334 566999999999999999998886 2122233344544431 0000 00000
Q ss_pred CCChhhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEe-cchhhhhccCC
Q 046470 229 GFSENWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTT-RSVDVCDQMDA 300 (888)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~~~~ 300 (888)
+.. .....+... .+.+.+ .+++-++|+|+++.. ..+..+...+........+|++| ....+......
T Consensus 91 ~~~----~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 91 DAA----SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred ccc----ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 100 111222222 233322 346679999999854 33555544444433455555544 44444332322
Q ss_pred --ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH-HHHHHH
Q 046470 301 --EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL-KTVGRA 356 (888)
Q Consensus 301 --~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai-~~~~~~ 356 (888)
..+++.+++.++....+.+.+.......+ ++.+..|++.++|.+--+ ..+-.+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~aln~Lekl 221 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAESLLERL 221 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 28999999999999999998765442222 577899999999988544 444333
No 69
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.4e-07 Score=72.23 Aligned_cols=58 Identities=34% Similarity=0.491 Sum_probs=31.2
Q ss_pred chhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEEeccCCc
Q 046470 525 RLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDLSWTE 582 (888)
Q Consensus 525 ~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 582 (888)
+|++|++++|.++.+++..|.++++|++|++++|.++.+| ..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555555555555555555555555555555542 344555555555555554
No 70
>PRK09087 hypothetical protein; Validated
Probab=98.40 E-value=3.5e-06 Score=85.02 Aligned_cols=140 Identities=19% Similarity=0.178 Sum_probs=89.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcE
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEF 256 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 256 (888)
..+.+.|+|+.|+|||+|++.++... .. .+++...+...+. ..+.+ -
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~~-------~~i~~~~~~~~~~-----------------------~~~~~--~ 89 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-DA-------LLIHPNEIGSDAA-----------------------NAAAE--G 89 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-CC-------EEecHHHcchHHH-----------------------Hhhhc--C
Confidence 34679999999999999999988764 11 1332221111111 11111 3
Q ss_pred EEEEccCCCcc----chhhhCCCCCCCCCCcEEEEEecc---------hhhhhccCCc-eeEcCCCChHHHHHHHHHHhh
Q 046470 257 VLLLDDIWKPI----NLKDMGVPLQNLNAGSKIVLTTRS---------VDVCDQMDAE-KVEVSCLAHDEAWKLFQKMVE 322 (888)
Q Consensus 257 LlVlDdv~~~~----~~~~l~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~ 322 (888)
+|++||+.... .+-.+...+ ...|..||+|++. .+..+++... .+++++++.++-.+++.+.+.
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 78889996431 122221122 1346678988873 3345555555 899999999999999999986
Q ss_pred cccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 323 RSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
......+ +++..-|++.+.|..-++..+-
T Consensus 168 ~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 168 DRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 5433333 6888889998888776666443
No 71
>PRK04195 replication factor C large subunit; Provisional
Probab=98.39 E-value=1.8e-05 Score=90.01 Aligned_cols=178 Identities=21% Similarity=0.283 Sum_probs=107.7
Q ss_pred CcccchHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecc-----hHHHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVST-----LQDDIGKR 227 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----l~~~i~~~ 227 (888)
.+++|.+..++.+.+|+..- +...+.+.|+|++|+||||+|+.+++.. .++. +-++.++ ....++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~-ielnasd~r~~~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEV-IELNASDQRTADVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCE-EEEcccccccHHHHHHHHHH
Confidence 35899999999999998652 1236789999999999999999999876 1322 2223331 11111111
Q ss_pred cCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc------hhhhCCCCCCCCCCcEEEEEecch-hhhh-ccC
Q 046470 228 IGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN------LKDMGVPLQNLNAGSKIVLTTRSV-DVCD-QMD 299 (888)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~iivTtR~~-~v~~-~~~ 299 (888)
.... ......++-+||+|+++.... +..+...+. ..+..||+|+.+. .... ...
T Consensus 88 ~~~~----------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 88 AATS----------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred hhcc----------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh
Confidence 1000 001113678999999986421 333322222 1234466655432 2211 111
Q ss_pred --CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhcc
Q 046470 300 --AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKS 359 (888)
Q Consensus 300 --~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~ 359 (888)
...+++.+++.++....+.+.+.......+ .+....|++.++|..-.+......+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~ 208 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAE 208 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 227899999999999998888765443333 678899999999976655444433433
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4.2e-06 Score=94.13 Aligned_cols=192 Identities=15% Similarity=0.138 Sum_probs=111.2
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhcccccc-C-CCCEEEEEEec-chHHHHHHH---
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQ-H-HFDVVIWAAVS-TLQDDIGKR--- 227 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~-~f~~~~wv~~~-~l~~~i~~~--- 227 (888)
.++||.+..++.|.+++.. +++ +.+.++|..|+||||+|+.+.+...-.. . ......--|.. ..-..|...
T Consensus 16 ddVIGQe~vv~~L~~al~~--gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQ--QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHcCcHHHHHHHHHHHHh--CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 3589999999999999976 443 5678999999999999999988762100 0 00000000000 001111100
Q ss_pred --cCCChhhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-Eecchhhhhcc
Q 046470 228 --IGFSENWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSVDVCDQM 298 (888)
Q Consensus 228 --l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~ 298 (888)
+.+.. ......+++.+.+... ..++.-++|||+++.. ..+..+...+..-..+.++|+ ||....+..-.
T Consensus 94 DviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTI 171 (700)
T PRK12323 94 DYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 171 (700)
T ss_pred cceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHH
Confidence 00000 0112233333333221 1456679999999864 345555544544344556555 55555554322
Q ss_pred CC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 299 DA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 299 ~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
.. ..+.+..++.++..+.+.+.+.......+ .+..+.|++.++|.|.....+
T Consensus 172 rSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 172 LSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22 28899999999999999887764432222 456788999999998654443
No 73
>PRK05642 DNA replication initiation factor; Validated
Probab=98.37 E-value=5.3e-06 Score=84.58 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=92.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEE
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFV 257 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 257 (888)
...+.|+|..|+|||.|++++++.. . ..-..++|++..++.... ..+.+.+++-. +
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~~~~~~~--------------------~~~~~~~~~~d-~ 100 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLAELLDRG--------------------PELLDNLEQYE-L 100 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHHHHHhhh--------------------HHHHHhhhhCC-E
Confidence 3678999999999999999998876 2 122356677665433210 12233333222 6
Q ss_pred EEEccCCCc---cchhh-hCCCCCC-CCCCcEEEEEecchh---------hhhccCCc-eeEcCCCChHHHHHHHHHHhh
Q 046470 258 LLLDDIWKP---INLKD-MGVPLQN-LNAGSKIVLTTRSVD---------VCDQMDAE-KVEVSCLAHDEAWKLFQKMVE 322 (888)
Q Consensus 258 lVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~ 322 (888)
||+||+... ..|.. +...+.. ...|..||+|++... +.+++... .+++++++.++-.+.+.+++.
T Consensus 101 LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 101 VCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred EEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 889999632 24433 2222211 234667888887522 23344444 789999999999999997665
Q ss_pred cccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 323 RSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
......+ +++..-|++.+.|..-.+..+-
T Consensus 181 ~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 181 RRGLHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 4322222 6777888888877655554443
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=9e-06 Score=91.21 Aligned_cols=189 Identities=18% Similarity=0.163 Sum_probs=110.9
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCC-----EEEEEEecchHHHHHHHcC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD-----VVIWAAVSTLQDDIGKRIG 229 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-----~~~wv~~~~l~~~i~~~l~ 229 (888)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++... -..... ..+-.| .....|.....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C--~~C~~i~~~~h 96 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQC--TNCISFNNHNH 96 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCC--hHHHHHhcCCC
Confidence 35799999999888877662 2246788999999999999999988761 111100 000000 00111110000
Q ss_pred CCh---hhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-EecchhhhhccC
Q 046470 230 FSE---NWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSVDVCDQMD 299 (888)
Q Consensus 230 ~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~~ 299 (888)
..- +.......+++...+... +.+++-++|+|+++.. ..+..+...+......+.+|+ ||+...+.....
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 000 000112333333322221 2456779999999864 346666555544445666654 555555544333
Q ss_pred C--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 300 A--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 300 ~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
. ..+++.+++.++....+.+.+.......+ ++....|++.++|.+--+
T Consensus 177 SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 177 SRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 27899999999999999998875442222 566788999999877443
No 75
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.36 E-value=5.9e-06 Score=84.33 Aligned_cols=171 Identities=14% Similarity=0.128 Sum_probs=100.9
Q ss_pred CcccchHH-HHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChh
Q 046470 155 HTVVGQEL-LLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 155 ~~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
..++|... .+..+.++... ...+.+.|+|+.|+|||+|++.+++... ..-..+.++.+.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~----------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW----------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh-----------
Confidence 34456333 33444444333 3446899999999999999999998762 2223455655542110
Q ss_pred hhcCCCHHHHHHHHHHHhccCcEEEEEccCCCc---cchhhhC-CCCCC-CCCC-cEEEEEecch---------hhhhcc
Q 046470 234 WWKKKSPEEKAVDISSILSRKEFVLLLDDIWKP---INLKDMG-VPLQN-LNAG-SKIVLTTRSV---------DVCDQM 298 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~iivTtR~~---------~v~~~~ 298 (888)
...+ +.+.+.. --+|++||+... ..|+... ..+.. ...| .++|+||+.. ++.+++
T Consensus 87 -----~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl 156 (235)
T PRK08084 87 -----FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRL 156 (235)
T ss_pred -----hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH
Confidence 0011 1122211 248999999753 2343221 11111 1123 4789988753 345566
Q ss_pred CCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 299 DAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 299 ~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
... ++++++++.++-.+++.+++.......+ +++..-|++.+.|..-++..+-
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHH
Confidence 666 8999999999999999886654332233 6788888888887665554443
No 76
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.35 E-value=1.7e-05 Score=77.41 Aligned_cols=174 Identities=19% Similarity=0.255 Sum_probs=96.2
Q ss_pred CcccchHHHHHHHHHHhh---cCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCC
Q 046470 155 HTVVGQELLLYRVWKCIT---DQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFS 231 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~ 231 (888)
.+|||.+.-++.+.-++. ..++....+..||++|+||||||..+++.. ...|. +++.+.+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i----------- 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAI----------- 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhh-----------
Confidence 468999988877654443 234567889999999999999999999987 34442 2322210
Q ss_pred hhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--c-------hhhhCCCC-CCCCC-----------CcEEEEEec
Q 046470 232 ENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--N-------LKDMGVPL-QNLNA-----------GSKIVLTTR 290 (888)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~-------~~~l~~~l-~~~~~-----------gs~iivTtR 290 (888)
....+++..+. .+ +++.+|++|++.... + .+.....+ ...+. =+-|=.|||
T Consensus 87 ------~k~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 87 ------EKAGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp -------SCHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ------hhHHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 01122222222 22 345688889997531 1 11110000 01111 122345888
Q ss_pred chhhhhccCCc---eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHH
Q 046470 291 SVDVCDQMDAE---KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRA 356 (888)
Q Consensus 291 ~~~v~~~~~~~---~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 356 (888)
...+..-+... ..+++..+.+|-.++..+.+..-....+ ++.+.+|+++|.|-|--..-+-+.
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHHHH
Confidence 87666555554 4589999999999999988765432222 688999999999999655444333
No 77
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=6.2e-06 Score=95.98 Aligned_cols=189 Identities=15% Similarity=0.154 Sum_probs=109.6
Q ss_pred CcccchHHHHHHHHHHhhcCCCCce-EEEEEcCCCCcHHHHHHHHHhccccccCCCCE-EEEEEecchHHHHHHHc----
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRG-IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDV-VIWAAVSTLQDDIGKRI---- 228 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~l~~~i~~~l---- 228 (888)
..+||.+..++.|.+++.. +++. .+.++|+.|+||||+|+.+++..- -...... -+-.|-+ -..|....
T Consensus 16 ddIIGQe~Iv~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~s--C~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSS--CVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchH--HHHHhcCCCceE
Confidence 4589999999999988876 4554 568999999999999999998762 1111100 0000000 00111000
Q ss_pred -CCChhhhcCCCHHHH---HHHHHH-HhccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEec-chhhhhcc--
Q 046470 229 -GFSENWWKKKSPEEK---AVDISS-ILSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTR-SVDVCDQM-- 298 (888)
Q Consensus 229 -~~~~~~~~~~~~~~~---~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~-- 298 (888)
.+... .....+.+ ...+.. -..+++-++|||+++.. ..+..+...+.....+.++|++|. ...+..-.
T Consensus 91 iEidAa--s~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS 168 (944)
T PRK14949 91 IEVDAA--SRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS 168 (944)
T ss_pred EEeccc--cccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH
Confidence 00000 01112222 222211 12467789999999864 345555444443344566665444 44443222
Q ss_pred CCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 299 DAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 299 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
....+++.+|+.++..+.+.+.+....... -.+.+..|++.++|.|--+..+
T Consensus 169 RCq~f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 169 RCLQFNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred hheEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 223899999999999999988775433222 2577889999999988544433
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.33 E-value=1e-05 Score=87.59 Aligned_cols=173 Identities=13% Similarity=0.174 Sum_probs=103.8
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENW 234 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~ 234 (888)
.+++|++..++.+..++.. ...+.+.++|+.|+||||+|+.+.+... ...+.. .++.+. ..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~-~~i~~~-----------~~--- 77 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELY--GEDWRE-NFLELN-----------AS--- 77 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHc--CCcccc-ceEEec-----------cc---
Confidence 3579999999999999876 4556689999999999999999988761 111211 122211 00
Q ss_pred hcCCCHHHHHHHHHHHh------ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecc-hhhhhccC--Ccee
Q 046470 235 WKKKSPEEKAVDISSIL------SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMD--AEKV 303 (888)
Q Consensus 235 ~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~--~~~~ 303 (888)
...........+.+.. ...+-++|+|+++... ....+...+......+++|+++.. ..+..... ...+
T Consensus 78 -~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 78 -DERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred -cccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 0001111111122211 1345689999987542 233333333333345667776643 22221111 1278
Q ss_pred EcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 304 EVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
++.+++.++....+.+.+.......+ ++.+..+++.++|.+--+
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 99999999999999888765442222 677889999999987653
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=2.7e-06 Score=80.34 Aligned_cols=122 Identities=20% Similarity=0.152 Sum_probs=72.1
Q ss_pred cchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcC
Q 046470 158 VGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKK 237 (888)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~ 237 (888)
+|++..+..+...+.. ...+.+.|+|++|+||||+++.+++... ..-..++++................. .
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~---~- 71 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGH---F- 71 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhh---h-
Confidence 4788888999888866 4567899999999999999999999872 22234566666532222111110000 0
Q ss_pred CCHHHHHHHHHHHhccCcEEEEEccCCCc-----cchhhhCCCCCC---CCCCcEEEEEecch
Q 046470 238 KSPEEKAVDISSILSRKEFVLLLDDIWKP-----INLKDMGVPLQN---LNAGSKIVLTTRSV 292 (888)
Q Consensus 238 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~l~~---~~~gs~iivTtR~~ 292 (888)
............++.+||+||++.. ..+..+...+.. ...+..||+||...
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011112223456789999999853 122222222211 13577888888865
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2e-08 Score=99.09 Aligned_cols=84 Identities=23% Similarity=0.239 Sum_probs=54.9
Q ss_pred cccEEEcCCCCCc--ccChhhhcccCCCEEeccCCcccc-cCcccccCCccceeccccccccCCcc-ccccCCCCCCcEE
Q 046470 549 SLRVLSLGSNALS--KLPSGISSLVSLHHLDLSWTEITG-LPQELKALEKLRYLNLEHAYMLSIIP-HQLISGFSKLEVL 624 (888)
Q Consensus 549 ~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~i~~L~~L~~L 624 (888)
.|++||||+..|+ .+-.-++.|..|+.|.|.++.+.. +-..+.+-.+|+.|++++|....... .-++.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5788888888776 344556777788888888777665 55566667777777777775443322 1224566666666
Q ss_pred eccCCCCC
Q 046470 625 RLLGCGSN 632 (888)
Q Consensus 625 ~l~~~~~~ 632 (888)
+++.|...
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 66666543
No 81
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2.9e-06 Score=93.01 Aligned_cols=188 Identities=15% Similarity=0.093 Sum_probs=108.7
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCCh-
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSE- 232 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~- 232 (888)
.+++|.+..++.+..++.. ++. +.+.++|+.|+||||+|+.+++..-.....-...+..|-+ -..|.......-
T Consensus 18 ~dvVGQe~iv~~L~~~i~~--~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s--C~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKS--GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS--CLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH--HHHHHccCCccce
Confidence 3589999999999998877 444 4689999999999999999988761110000000111111 111111110000
Q ss_pred --hhhcCCCHHH---HHHHHHH-HhccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-EecchhhhhccCCc--
Q 046470 233 --NWWKKKSPEE---KAVDISS-ILSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSVDVCDQMDAE-- 301 (888)
Q Consensus 233 --~~~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~~~~-- 301 (888)
........+. +...+.. ...++.-++|+|+++.. ..+..+...+........+|+ ||....+.......
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq 173 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhh
Confidence 0001111222 2222221 12456679999999864 345655444433334455444 55545553333322
Q ss_pred eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccH
Q 046470 302 KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLA 349 (888)
Q Consensus 302 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 349 (888)
.|.+.+++.++..+.+.+.+.......+ ++....|++.++|.+--
T Consensus 174 ~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 174 DFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRD 218 (484)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHH
Confidence 7999999999999988888765432222 67788999999998743
No 82
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.32 E-value=7.6e-06 Score=83.54 Aligned_cols=168 Identities=11% Similarity=0.077 Sum_probs=96.4
Q ss_pred cchHHHH-HHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhc
Q 046470 158 VGQELLL-YRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWK 236 (888)
Q Consensus 158 vGr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~ 236 (888)
.|..... ..+.++... ....+.+.|+|..|+|||+||+.+++... .... ...+++.......+
T Consensus 22 ~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~~~~------------ 85 (227)
T PRK08903 22 AGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPLLAF------------ 85 (227)
T ss_pred cCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhHHHH------------
Confidence 4554433 334343332 23456788999999999999999998751 1222 33444443221110
Q ss_pred CCCHHHHHHHHHHHhccCcEEEEEccCCCccc--hhhhCCCCCC-CCCCc-EEEEEecchhh--------hhccCC-cee
Q 046470 237 KKSPEEKAVDISSILSRKEFVLLLDDIWKPIN--LKDMGVPLQN-LNAGS-KIVLTTRSVDV--------CDQMDA-EKV 303 (888)
Q Consensus 237 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs-~iivTtR~~~v--------~~~~~~-~~~ 303 (888)
... ...-+||+||+..... ...+...+.. ...+. .||+|++.... .+.+.. ..+
T Consensus 86 ------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i 152 (227)
T PRK08903 86 ------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVY 152 (227)
T ss_pred ------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEE
Confidence 111 2344789999975422 1222222211 12344 46666664322 223333 388
Q ss_pred EcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHh
Q 046470 304 EVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAM 357 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 357 (888)
++.++++++-..++.+.+.......+ ++....+++.+.|.+..+..+...+
T Consensus 153 ~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 153 ELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999998877777765443322222 6788888889999998887776654
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=9.9e-06 Score=90.59 Aligned_cols=194 Identities=16% Similarity=0.165 Sum_probs=107.1
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccC-CCCEEEEEEecchHHHHHHHcCCC-
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQH-HFDVVIWAAVSTLQDDIGKRIGFS- 231 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~l~~~i~~~l~~~- 231 (888)
.+++|.+...+.+...+.. +.. +.+.++|++|+||||+|+.+++....... .+.. +-.| .....+...-...
T Consensus 14 ~divGq~~i~~~L~~~i~~--~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p-c~~c--~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKK--NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP-CNEC--RACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC-Cccc--HHHHHHhcCCCCcc
Confidence 4589999888888887766 444 56889999999999999999887511100 0000 0000 0000000000000
Q ss_pred --hhhhcCCCHHHHHHHHHHH-----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecc-hhhhhccCCc
Q 046470 232 --ENWWKKKSPEEKAVDISSI-----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMDAE 301 (888)
Q Consensus 232 --~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~~ 301 (888)
-........+++. .+.+. ..+++-++|+|+++.. .....+...+........+|++|.+ ..+.......
T Consensus 89 ~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR 167 (472)
T PRK14962 89 IELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 (472)
T ss_pred EEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC
Confidence 0000111222222 22222 2345679999999753 2344444344332334444444433 4443333322
Q ss_pred --eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCC-CccHHHHHHHHh
Q 046470 302 --KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGG-LPLALKTVGRAM 357 (888)
Q Consensus 302 --~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~~~l 357 (888)
.+++.+++.++....+.+.+.......+ ++....|++.++| .+.|+..+..+.
T Consensus 168 ~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 168 CQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred cEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8899999999999998888754332222 5678889998865 567777665543
No 84
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.2e-08 Score=100.75 Aligned_cols=84 Identities=32% Similarity=0.260 Sum_probs=52.7
Q ss_pred CCCEEeccCCcccc--cCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchh
Q 046470 572 SLHHLDLSWTEITG--LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAG 649 (888)
Q Consensus 572 ~L~~L~L~~~~i~~--Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 649 (888)
.|++|||++..|+. +..-+..+.+|+.|.+.++.....+-.. |.+=.+|+.|+++.|+... ..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t--------------~n 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT--------------EN 250 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc--------------hh
Confidence 47888888877664 5555677778888888877664444444 6666778888887776542 11
Q ss_pred hHHHHhhcCCCCceEEEEEec
Q 046470 650 LLMKELLGLKHLNFLSWSFRS 670 (888)
Q Consensus 650 ~~~~~L~~L~~L~~L~l~~~~ 670 (888)
..---+.+++.|..|+++++.
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhh
Confidence 122234556666666666554
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.29 E-value=5.4e-06 Score=97.13 Aligned_cols=166 Identities=21% Similarity=0.299 Sum_probs=96.1
Q ss_pred cccchHHHHH---HHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCCh
Q 046470 156 TVVGQELLLY---RVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSE 232 (888)
Q Consensus 156 ~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~ 232 (888)
+++|++..+. .+...+.. +..+.+.++|++|+||||+|+.+++.. ...|. .+......
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~-----~lna~~~~--------- 89 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHT---RAHFS-----SLNAVLAG--------- 89 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHh---cCcce-----eehhhhhh---------
Confidence 5789887764 45555554 556778899999999999999999876 34442 11110000
Q ss_pred hhhcCCCHHHHHHHHHHHh--ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE--Eecchh--hhhcc--CCce
Q 046470 233 NWWKKKSPEEKAVDISSIL--SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL--TTRSVD--VCDQM--DAEK 302 (888)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--TtR~~~--v~~~~--~~~~ 302 (888)
..+..+......+.+ .+++.+|||||++.. ...+.+...+ ..|+.++| ||.+.. +.... ....
T Consensus 90 ----i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v 162 (725)
T PRK13341 90 ----VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRL 162 (725)
T ss_pred ----hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccc
Confidence 001112222222222 246789999999753 3344443222 34565665 344421 21111 1237
Q ss_pred eEcCCCChHHHHHHHHHHhhccc----CCCCCChHHHHHHHHHHhCCCc
Q 046470 303 VEVSCLAHDEAWKLFQKMVERST----LDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 303 ~~l~~L~~~~a~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~g~P 347 (888)
+.+++|+.++...++.+.+.... .....--++....|++.+.|..
T Consensus 163 ~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 163 FRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 89999999999999998765210 0001112566788888888764
No 86
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=5e-08 Score=107.30 Aligned_cols=101 Identities=27% Similarity=0.302 Sum_probs=55.6
Q ss_pred hhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecccccc
Q 046470 526 LITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAY 605 (888)
Q Consensus 526 Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~ 605 (888)
|.+.++++|.+.....+ +.-++.|+.|||++|+++..- .+..|.+|++|||++|.+..+|.--..-.+|+.|.+++|.
T Consensus 166 L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH
Confidence 33444444444333222 455566666677776666554 5666666677777766666665422111236666666664
Q ss_pred ccCCccccccCCCCCCcEEeccCCCC
Q 046470 606 MLSIIPHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 606 ~l~~lp~~~i~~L~~L~~L~l~~~~~ 631 (888)
. ..+-. +.+|.+|+.|++++|-+
T Consensus 244 l-~tL~g--ie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 244 L-TTLRG--IENLKSLYGLDLSYNLL 266 (1096)
T ss_pred H-Hhhhh--HHhhhhhhccchhHhhh
Confidence 3 33332 56666666666665544
No 87
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=1.2e-05 Score=89.96 Aligned_cols=188 Identities=12% Similarity=0.146 Sum_probs=114.9
Q ss_pred cccchHHH--HHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChh
Q 046470 156 TVVGQELL--LYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 156 ~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
.++|.... ...+..+....+.....+.|+|..|+|||+|++++.+.. .....-..+++++..++...+...++...
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~~~~f~~~~~~~l~~~~- 194 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMSGDEFARKAVDILQKTH- 194 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEHHHHHHHHHHHHHHhh-
Confidence 45675432 223333333222234568999999999999999999875 22222335567777787777776664210
Q ss_pred hhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc---ch-hhhCCCCCC-CCCCcEEEEEecc---------hhhhhccC
Q 046470 234 WWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI---NL-KDMGVPLQN-LNAGSKIVLTTRS---------VDVCDQMD 299 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~ 299 (888)
.....+.+.++ +.-+||+||+.... .+ +.+...+.. ...|..||+|+.. +.+.+++.
T Consensus 195 --------~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~ 265 (450)
T PRK14087 195 --------KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFN 265 (450)
T ss_pred --------hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHh
Confidence 12233444444 34588999997532 11 222222211 1234568888664 23344555
Q ss_pred Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHH
Q 046470 300 AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGR 355 (888)
Q Consensus 300 ~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 355 (888)
.. .+.+++++.++-.+++.+++...... ..--+++..-|++.++|.|-.+..+..
T Consensus 266 ~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 266 MGLSIAIQKLDNKTATAIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred CCceeccCCcCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 55 88999999999999999988643211 012268889999999999977766653
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.6e-05 Score=89.90 Aligned_cols=184 Identities=18% Similarity=0.167 Sum_probs=109.2
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccC------------------CCCEEEEEE
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQH------------------HFDVVIWAA 216 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~ 216 (888)
.+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++....... .|.-.+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 35899999999999888762 22356789999999999999999886511000 111122221
Q ss_pred ecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHH-hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-Eecch
Q 046470 217 VSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSI-LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSV 292 (888)
Q Consensus 217 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~ 292 (888)
.. ... ...+..++...+... ..+++-++|+||++.. ..+..+...+......+.+|+ ||...
T Consensus 95 aa-------s~~-------gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~ 160 (546)
T PRK14957 95 AA-------SRT-------GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160 (546)
T ss_pred cc-------ccc-------CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChh
Confidence 11 000 000111222222211 2456779999999754 335555444544445666665 55444
Q ss_pred hhhhccC--CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc-cHHHHHHHH
Q 046470 293 DVCDQMD--AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP-LALKTVGRA 356 (888)
Q Consensus 293 ~v~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~ 356 (888)
.+..... ...+++.+++.++....+.+.+....... -++....|++.++|.+ .|+..+-.+
T Consensus 161 kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4442222 23899999999999888888665433222 2566788999999966 455555433
No 89
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.6e-05 Score=81.11 Aligned_cols=196 Identities=15% Similarity=0.193 Sum_probs=122.8
Q ss_pred CcccchHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec------chHHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS------TLQDDIGK 226 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~------~l~~~i~~ 226 (888)
+.+.+|+.+++++...|... +....-+.|+|..|+|||+.++.+.+.........+ +++|.+- +++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 34899999999999988652 233344999999999999999999998832222232 5666654 88888998
Q ss_pred HcCCChhhhcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCccch--hhhCCCCCCC-CCCcEEEE--Eecchh------
Q 046470 227 RIGFSENWWKKKSPEEKAVDISSILS--RKEFVLLLDDIWKPINL--KDMGVPLQNL-NAGSKIVL--TTRSVD------ 293 (888)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~l~~~l~~~-~~gs~iiv--TtR~~~------ 293 (888)
+++... .......+....+.+.+. ++.+++|||+++....- +.+...+... ..+++|++ .+-+..
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 885221 144566677777888774 57899999999754221 1111111111 11455433 333333
Q ss_pred --hhhccCCceeEcCCCChHHHHHHHHHHhhcc--cCCCCCChHHHHHHHHHHhCC-CccHHHHH
Q 046470 294 --VCDQMDAEKVEVSCLAHDEAWKLFQKMVERS--TLDSHASIPELAKTLARECGG-LPLALKTV 353 (888)
Q Consensus 294 --v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g-~Plai~~~ 353 (888)
|.+..+...+...|-+.+|-...+..++... ....++..-+....++..-+| --.||..+
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2334444467889999999999999887532 112333444444444445454 44555444
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.5e-05 Score=90.89 Aligned_cols=187 Identities=14% Similarity=0.150 Sum_probs=107.0
Q ss_pred CcccchHHHHHHHHHHhhcCCCC-ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHH----
Q 046470 155 HTVVGQELLLYRVWKCITDQDKN-RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKR---- 227 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~---- 227 (888)
.+++|.+..++.|..++.. ++ .+.+.++|+.|+||||+|+.+.+..- -..... +..+. ..-..|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CCCCcccHHHHHHhccCccc
Confidence 3589999999999999886 44 35789999999999999999988651 110000 00000 000000000
Q ss_pred -cCCChhhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecc-hhhhhccC
Q 046470 228 -IGFSENWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMD 299 (888)
Q Consensus 228 -l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~ 299 (888)
+.+.. ......+.+...+... ..+++-++|+|++.... ....+...+.......++|++|.+ ..+....-
T Consensus 90 vlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 90 LLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred eEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 00000 0112222222222111 23566799999997643 233343334333345667766654 33322111
Q ss_pred Cc--eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 300 AE--KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 300 ~~--~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
.. .+.+.+++.++....+.+.+.......+ .+....|++.++|.+.-+..
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHH
Confidence 22 7889999999999999988765442222 56789999999998854433
No 91
>PF14516 AAA_35: AAA-like domain
Probab=98.23 E-value=0.00028 Score=75.94 Aligned_cols=194 Identities=16% Similarity=0.221 Sum_probs=117.8
Q ss_pred CCcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec---------------
Q 046470 154 DHTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--------------- 218 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--------------- 218 (888)
.+..|.|...-+++.+.+.++ -..+.|.|+-.+|||+|...+.+.. + +..+ .++++++.
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l-~-~~~~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERL-Q-QQGY-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHH-H-HCCC-EEEEEEeecCCCcccCCHHHHHH
Confidence 345689987777777777652 3589999999999999999998887 2 2233 44567665
Q ss_pred chHHHHHHHcCCChh---hhc--CCCHHHHHHHHHHHh---ccCcEEEEEccCCCccc---h-hhhCCCCC----C---C
Q 046470 219 TLQDDIGKRIGFSEN---WWK--KKSPEEKAVDISSIL---SRKEFVLLLDDIWKPIN---L-KDMGVPLQ----N---L 279 (888)
Q Consensus 219 ~l~~~i~~~l~~~~~---~~~--~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~---~-~~l~~~l~----~---~ 279 (888)
.+...|.+++++... .+. ..........+.+.+ .+++.+|++|+++..-. + ..+...++ . .
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 234455666665431 111 112233334444433 26899999999985321 1 11111110 0 0
Q ss_pred -CCCc-EEE-EE-ecchhhhhc----cCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 280 -NAGS-KIV-LT-TRSVDVCDQ----MDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 280 -~~gs-~ii-vT-tR~~~v~~~----~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
.-.+ +.+ +. |+....... .+.. .++|.+++.+|...|..+.-..-. ....++|...+||+|.-+
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHH
Confidence 0011 122 21 222111111 1222 789999999999999987743211 344899999999999999
Q ss_pred HHHHHHhccC
Q 046470 351 KTVGRAMKSR 360 (888)
Q Consensus 351 ~~~~~~l~~~ 360 (888)
..++..+..+
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999999764
No 92
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2e-05 Score=87.66 Aligned_cols=173 Identities=19% Similarity=0.231 Sum_probs=107.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccc-------------------cCCCCEEEE
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHE-------------------QHHFDVVIW 214 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~-------------------~~~f~~~~w 214 (888)
.++||.+..++.+.+.+.. ++. +.+.++|+.|+||||+|+.++...--. ..+.| ++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~--~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D-v~e 89 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTL--NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD-VIE 89 (491)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC-EEE
Confidence 4689999999888888876 444 478999999999999999998743000 01111 112
Q ss_pred EEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEE
Q 046470 215 AAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLT 288 (888)
Q Consensus 215 v~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT 288 (888)
++.+ .....++....+... ..+++-++|+|+++.. ..+..+...+.....++++|++
T Consensus 90 idaa-----------------s~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 90 IDAA-----------------SNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred Eecc-----------------cCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 2111 112222322222111 1345668999999754 3344454444444456666665
Q ss_pred e-cchhhhhccCC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 289 T-RSVDVCDQMDA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 289 t-R~~~v~~~~~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
| ....+...... ..+++.+++.++....+.+.+.......+ ++.+..|++.++|.+-.+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5 44455433322 38899999999999999988876542222 567788999999877543
No 93
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=2.3e-05 Score=87.55 Aligned_cols=179 Identities=17% Similarity=0.198 Sum_probs=107.4
Q ss_pred cccchHHHH--HHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChh
Q 046470 156 TVVGQELLL--YRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 156 ~~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
.++|-.... ..+.++.... +....+.|+|.+|+|||+|++++++.. .....-..++|++..++...+...+...
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~-~~~n~l~lyG~~G~GKTHLl~ai~~~l-~~~~~~~~v~yi~~~~f~~~~~~~~~~~-- 182 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNP-GRYNPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITSEKFLNDLVDSMKEG-- 182 (440)
T ss_pred cccCCchHHHHHHHHHHHhCc-CCCCeEEEEcCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEHHHHHHHHHHHHhcc--
Confidence 345754332 2333333322 224569999999999999999999987 2222123577888777777776665321
Q ss_pred hhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc---ch-hhhCCCCCC-CCCCcEEEEEec-ch--------hhhhccC
Q 046470 234 WWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI---NL-KDMGVPLQN-LNAGSKIVLTTR-SV--------DVCDQMD 299 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR-~~--------~v~~~~~ 299 (888)
... .+.+.+..+.-+|++||+.... .+ +.+...+.. ...|..||+||. .. .+.+++.
T Consensus 183 -----~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~ 253 (440)
T PRK14088 183 -----KLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ 253 (440)
T ss_pred -----cHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHh
Confidence 122 2333344456689999997431 11 122111111 123456888875 22 1233444
Q ss_pred Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 300 AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 300 ~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
.. .+++++.+.+.-..++.+.+.......+ +++...|++.+.|.--.+
T Consensus 254 ~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 254 MGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred cCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 44 7899999999999999988765432333 678888888888764433
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.19 E-value=3.5e-05 Score=84.76 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=107.7
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccc-c------------------CCCCEEEEE
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHE-Q------------------HHFDVVIWA 215 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv 215 (888)
..++|.+..++.+.+++..+ .-.+.+.++|++|+||||+|+.+....... . .+++. +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 35799999999999988762 234578899999999999999998775110 0 12222 122
Q ss_pred EecchHHHHHHHcCCChhhhcCCCHH---HHHHHHHHH-hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEe
Q 046470 216 AVSTLQDDIGKRIGFSENWWKKKSPE---EKAVDISSI-LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTT 289 (888)
Q Consensus 216 ~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt 289 (888)
..+ .....+ ++...+... ..+++-++|+|+++.. .....+...+......+.+|++|
T Consensus 92 ~~~-----------------~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 92 DAA-----------------SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred ecc-----------------ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 111 001111 122211111 2245568999998654 33444443443334456666666
Q ss_pred cchh-hhhccCC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 290 RSVD-VCDQMDA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 290 R~~~-v~~~~~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
.+.. +...... ..+++.+++.++....+.+.+.......+ ++.+..+++.++|.|..+....
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 5433 3222222 27889999999999999887754432222 5788899999999886555443
No 95
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.18 E-value=3.8e-06 Score=88.26 Aligned_cols=284 Identities=17% Similarity=0.179 Sum_probs=175.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCC-CEEEEEEec------chHHHHHHHcCCChhhhcCCCHHHHHHHHH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHF-DVVIWAAVS------TLQDDIGKRIGFSENWWKKKSPEEKAVDIS 248 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 248 (888)
...+.+.++|.|||||||++-.+.. . ...| +.+..+... .+.-.+...++.+. .+.+.-...+.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~ 82 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLV 82 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHH
Confidence 3568899999999999999999987 3 3444 445555544 22223333455543 23334455677
Q ss_pred HHhccCcEEEEEccCCCccc-hhhhCCCCCCCCCCcEEEEEecchhhhhccCCceeEcCCCChH-HHHHHHHHHhhccc-
Q 046470 249 SILSRKEFVLLLDDIWKPIN-LKDMGVPLQNLNAGSKIVLTTRSVDVCDQMDAEKVEVSCLAHD-EAWKLFQKMVERST- 325 (888)
Q Consensus 249 ~~l~~k~~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~l~~L~~~-~a~~Lf~~~~~~~~- 325 (888)
....++|.++|+||.....+ -..+...+..+...-.|+.|+|..... .+.....+.+|+.- ++.++|...+....
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~--~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV--AGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc--cccccccCCccccCCchhHHHHHHHHHhcc
Confidence 77889999999999865422 111111222334455678888864221 22226778888775 79999988775432
Q ss_pred -CCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCC---hhHHHHHHHHHHhcccccCCchHHHHhhhhhccccchHH
Q 046470 326 -LDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSN---IGDWKRAIKKIRTSASKFSGMEEKVFSRLKFSYDSLSDE 401 (888)
Q Consensus 326 -~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~---~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 401 (888)
......-.....+|.++..|.|++|...++..+.-.. .+...+-+..+........--.......+.+||--|...
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1122334678899999999999999999988776321 112222222222221111111235778889999999999
Q ss_pred HHHHHhhhccCCCCccccHHHHHHHHHHcCCCc--CcchhHHHHHHHHHhcccccc---CCcchhhhhHHHHHHHHHH
Q 046470 402 LRSCLLYCCLYPEDYKISKRELIDYWISEGFVD--DFDDGWEFINDLLHACLLEEE---GDDHVKMHDMIREMSLWVA 474 (888)
Q Consensus 402 ~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~--~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~~~ 474 (888)
.+--|.-++.|...|.-. ...|.+-|-.. +.-.....+..+++.++.... ....|+.-+-+|.++...-
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999998777544 33455554433 222244556667788776543 3445666666666665443
No 96
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=4.3e-06 Score=77.19 Aligned_cols=111 Identities=22% Similarity=0.337 Sum_probs=72.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccccc--CCCCEEEEEEec------chHHHHHHHcCCChhhhcCCCHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ--HHFDVVIWAAVS------TLQDDIGKRIGFSENWWKKKSPEEKAVDIS 248 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 248 (888)
+.+++.|+|.+|+|||++++.+.+...... ..-..++|+.++ .+...|+.+++.... ...+..++...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHHHHHHHH
Confidence 457899999999999999999998862110 013456688876 788888888887642 2356777888888
Q ss_pred HHhccCcE-EEEEccCCCc-c--chhhhCCCCCCCCCCcEEEEEecc
Q 046470 249 SILSRKEF-VLLLDDIWKP-I--NLKDMGVPLQNLNAGSKIVLTTRS 291 (888)
Q Consensus 249 ~~l~~k~~-LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~iivTtR~ 291 (888)
+.+...+. +||+||++.. . .++.+.. +.+ ..+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 88876655 9999999764 2 2333322 222 566777776665
No 97
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.15 E-value=3.4e-05 Score=86.10 Aligned_cols=180 Identities=20% Similarity=0.235 Sum_probs=106.5
Q ss_pred cccchHHHH--HHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChh
Q 046470 156 TVVGQELLL--YRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 156 ~~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
.++|.+... ..+.++....+.....+.|+|+.|+|||+|++++++.. .....-..+++++..++...+...+..
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~~~~~~~~~~~~~~~--- 187 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVSSEKFTNDFVNALRN--- 187 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEEHHHHHHHHHHHHHc---
Confidence 356755432 22223332222234578999999999999999999987 222212356777776666666655531
Q ss_pred hhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc---h-hhhCCCCCC-CCCCcEEEEEecch---------hhhhccC
Q 046470 234 WWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN---L-KDMGVPLQN-LNAGSKIVLTTRSV---------DVCDQMD 299 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~ 299 (888)
.... .+.+.+++ .-+|||||++.... + +.+...+.. ...|..+|+|+... .+.+++.
T Consensus 188 ----~~~~----~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~ 258 (405)
T TIGR00362 188 ----NKME----EFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFE 258 (405)
T ss_pred ----CCHH----HHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhcc
Confidence 1222 23333332 34899999975321 1 112111111 12345678877641 2334444
Q ss_pred Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHH
Q 046470 300 AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALK 351 (888)
Q Consensus 300 ~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 351 (888)
.. .+.+.+.+.++-..++.+.+.......+ +++...|++.+.|..-.+.
T Consensus 259 ~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 259 WGLVVDIEPPDLETRLAILQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 44 7899999999999999998875443333 6778888888887765433
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.15 E-value=2.6e-05 Score=88.16 Aligned_cols=180 Identities=19% Similarity=0.223 Sum_probs=108.6
Q ss_pred cccchHH--HHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChh
Q 046470 156 TVVGQEL--LLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 156 ~~vGr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
.++|... ....+..+....+.....+.|+|+.|+|||+|++++.+.. .....-..+++++..++...+...+..
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~~~~~~~~~~~~~~~--- 199 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVTSEKFTNDFVNALRN--- 199 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEEHHHHHHHHHHHHHc---
Confidence 3456443 2333333333322334678999999999999999999987 222223456677777766666655531
Q ss_pred hhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc----hhhhCCCCCC-CCCCcEEEEEecch---------hhhhccC
Q 046470 234 WWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN----LKDMGVPLQN-LNAGSKIVLTTRSV---------DVCDQMD 299 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~ 299 (888)
... ..+.+.++ +.-+|||||++.... .+.+...+.. ...|..||+|+... .+.+++.
T Consensus 200 ----~~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~ 270 (450)
T PRK00149 200 ----NTM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFE 270 (450)
T ss_pred ----CcH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhc
Confidence 111 22334444 345899999964311 1122111110 12345578877642 2344555
Q ss_pred Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHH
Q 046470 300 AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALK 351 (888)
Q Consensus 300 ~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 351 (888)
.. .+++++.+.++-..++.+.+.......+ +++...|++.++|..-.+.
T Consensus 271 ~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 271 WGLTVDIEPPDLETRIAILKKKAEEEGIDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred CCeeEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHH
Confidence 54 8899999999999999998865332223 6788899998888765443
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.6e-05 Score=89.47 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=108.8
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHc----
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRI---- 228 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l---- 228 (888)
.++||.+..++.+.+.+.. +++ ..+.++|+.|+||||+|+.+.+..-. ...+... -|.. .....|...-
T Consensus 16 ~divGQe~vv~~L~~~l~~--~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~~~--pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 16 AEVVGQEHVLTALANALDL--GRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGITAT--PCGECDNCREIEQGRFVDL 90 (647)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCCCC--CCCCCHHHHHHHcCCCCCc
Confidence 4589999999999988876 444 45789999999999999999887611 1100000 0000 1111111100
Q ss_pred -CCChhhhcCCCHHHHHHHHHH----HhccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-EecchhhhhccC-
Q 046470 229 -GFSENWWKKKSPEEKAVDISS----ILSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSVDVCDQMD- 299 (888)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~~- 299 (888)
.+.. ......++....+.. -..+++-++|+|+++.. ..+..+...+.......++|+ ||....+..-.-
T Consensus 91 ieida--as~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S 168 (647)
T PRK07994 91 IEIDA--ASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (647)
T ss_pred eeecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh
Confidence 0000 001122332222211 12466779999999854 344555444433344555555 444444432222
Q ss_pred -CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 300 -AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 300 -~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
+..+++.+++.++....+.+.+....... -++....|++.++|.+--+..+
T Consensus 169 RC~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 169 RCLQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hheEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 23899999999999999988765433222 2566788999999987644443
No 100
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.13 E-value=1.7e-05 Score=87.12 Aligned_cols=171 Identities=18% Similarity=0.200 Sum_probs=98.5
Q ss_pred CcccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
.++.|++..++++.+.+... -...+-+.++|++|+|||++|+++++.. ...|-.+ ..+.+...
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v---~~~~l~~~ 195 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRV---VGSELVRK 195 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEEec---chHHHHHH
Confidence 35789999999998877421 0224568999999999999999999876 3333111 11122111
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHH-hccCcEEEEEccCCCcc----------------chhhhCCCCC--CCCCCcE
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSI-LSRKEFVLLLDDIWKPI----------------NLKDMGVPLQ--NLNAGSK 284 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~gs~ 284 (888)
..+ ........+.+. -...+.+|++||++... .+..+...+. ....+.+
T Consensus 196 ---~~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 263 (364)
T TIGR01242 196 ---YIG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVK 263 (364)
T ss_pred ---hhh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 011 011112222222 23467899999997431 1111111111 1134667
Q ss_pred EEEEecchhh-----hhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 285 IVLTTRSVDV-----CDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 285 iivTtR~~~v-----~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
||.||...+. .+..... .+.+...+.++..++|...+......... ....+++.+.|..
T Consensus 264 vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 264 VIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred EEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence 8888875332 2211223 78999999999999999887554322111 2467777787754
No 101
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.13 E-value=7.9e-06 Score=80.58 Aligned_cols=46 Identities=28% Similarity=0.360 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHHhhc-CCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 157 VVGQELLLYRVWKCITD-QDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 157 ~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
|+||+++++++...|.. .....+.+.|+|.+|+|||+|+++++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999942 23456899999999999999999999988
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3.2e-05 Score=85.59 Aligned_cols=191 Identities=12% Similarity=0.130 Sum_probs=109.6
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEE-----Eec--chHHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWA-----AVS--TLQDDIGK 226 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv-----~~~--~l~~~i~~ 226 (888)
.+++|.+..++.+..++.. +++ ..+.++|+.|+||||+|+.+++... -....+...|. .++ ..-+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~--~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRM--GRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred hhccChHHHHHHHHHHHHh--CCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 4589999999999888876 444 4588999999999999999988761 11111000000 000 11111111
Q ss_pred HcCCCh---hhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEe-cchhhh
Q 046470 227 RIGFSE---NWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTT-RSVDVC 295 (888)
Q Consensus 227 ~l~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 295 (888)
.-...- +.......+++.+ +.+.+ .+++-++|+|+++.. ..+..+...+......+.+|++| +...+.
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 000000 0001111233332 33333 345668999999754 34555554554444566666554 444444
Q ss_pred hccCC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 296 DQMDA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 296 ~~~~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
..... ..+++.+++.++....+...+.......+ ++.+..|++.++|.+--+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 32222 27899999999999888887654332222 67889999999997754433
No 103
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.13 E-value=2.2e-05 Score=78.89 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=115.2
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEE-EEec---chHHHHHHHcCC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIW-AAVS---TLQDDIGKRIGF 230 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w-v~~~---~l~~~i~~~l~~ 230 (888)
++++|.+..+.-+.+.+.. ...++...+|++|.|||+-|..++... --.+.|.+++. .++| .+. +..
T Consensus 36 de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGis--vvr---- 106 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGIS--VVR---- 106 (346)
T ss_pred HhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhccccccccc--chh----
Confidence 4689999999999988877 678899999999999999999998876 33445655432 2333 000 000
Q ss_pred ChhhhcCCCHHHHHHHHHHHh--ccCc-EEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-EecchhhhhccCCc--e
Q 046470 231 SENWWKKKSPEEKAVDISSIL--SRKE-FVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSVDVCDQMDAE--K 302 (888)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~~~~--~ 302 (888)
. ...+...+........ ..++ -.+|||+++.. +.|..+...+.+....++.++ |+--..+..-.... .
T Consensus 107 --~--Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~K 182 (346)
T KOG0989|consen 107 --E--KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQK 182 (346)
T ss_pred --h--hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHH
Confidence 0 0001111110000000 0123 48899999864 568877666655556666554 44333333323223 7
Q ss_pred eEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC-ccHHHHH
Q 046470 303 VEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL-PLALKTV 353 (888)
Q Consensus 303 ~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 353 (888)
+..++|.+++...-+...+..+....+ .+..+.|++.++|- --|+.++
T Consensus 183 frFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 183 FRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 899999999999999988877664444 67789999999984 3444444
No 104
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.13 E-value=5.2e-06 Score=84.48 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--------chHHHH-----HHHcCCChhhhcCCCHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--------TLQDDI-----GKRIGFSENWWKKKSPEEK 243 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--------~l~~~i-----~~~l~~~~~~~~~~~~~~~ 243 (888)
.-..++|+|++|+|||||++.++++. .. .+|+.++|+.+. ++++.+ +.+++.+... ........
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHHH
Confidence 34679999999999999999999997 33 389999999865 556665 2222211100 00001111
Q ss_pred HHHHHHH-hccCcEEEEEccCCCc
Q 046470 244 AVDISSI-LSRKEFVLLLDDIWKP 266 (888)
Q Consensus 244 ~~~l~~~-l~~k~~LlVlDdv~~~ 266 (888)
......+ -+++++++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 1222222 2579999999999753
No 105
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3e-05 Score=88.78 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=108.8
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhcccccc-CCCCEEEEEEec--chHHHHHHHcCC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQ-HHFDVVIWAAVS--TLQDDIGKRIGF 230 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~--~l~~~i~~~l~~ 230 (888)
.++||.+..++.|.+++.. ++. ..+.++|+.|+||||+|+.+.+..--.. ........-.++ ..-+.|.. -..
T Consensus 16 ~dviGQe~vv~~L~~~l~~--~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~-g~h 92 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQ--QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS-GRF 92 (618)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc-CCC
Confidence 3589999999999998877 344 5678999999999999999977651000 000000000000 11111110 000
Q ss_pred Ch----hhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEe-cchhhhhccC
Q 046470 231 SE----NWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTT-RSVDVCDQMD 299 (888)
Q Consensus 231 ~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~~~ 299 (888)
.+ +.......++..+.+... ..++.-++|||+++.. ..+..+...+.......++|++| ....+.....
T Consensus 93 ~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIl 172 (618)
T PRK14951 93 VDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVL 172 (618)
T ss_pred CceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHH
Confidence 00 000112223332222211 1244568999999864 34555555554444566666555 4344432222
Q ss_pred --CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 300 --AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 300 --~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
...+++++++.++....+.+.+.......+ .+....|++.++|.+--+..
T Consensus 173 SRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 173 SRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 238999999999999999888765442222 56788999999987754433
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.00012 Score=83.00 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=106.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCC-
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFS- 231 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~- 231 (888)
.++||.+..++.+.+++.. +.. ..+.++|+.|+||||+|+.+.+..- -...+... -|.. ..-..|...-...
T Consensus 16 ~divGq~~v~~~L~~~~~~--~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~--pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ--QYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSAN--PCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh--CCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcc--cCCCCHHHHHHhcCCCceE
Confidence 4589999999999999976 444 4678999999999999999988761 11111000 0000 0001110000000
Q ss_pred --hhhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEec-chhhhhccCC--
Q 046470 232 --ENWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTR-SVDVCDQMDA-- 300 (888)
Q Consensus 232 --~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~~~-- 300 (888)
-+.......++....+... ..++.-++|+|+++.. .....+...+......+++|++|. ...+......
T Consensus 91 ~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc 170 (509)
T PRK14958 91 FEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC 170 (509)
T ss_pred EEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHh
Confidence 0000112233322222111 1356678999999864 344444444444345666666554 3333322222
Q ss_pred ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 301 EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 301 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
..+++.+++.++....+.+.+........ .+....|++.++|.+.-+..
T Consensus 171 ~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 171 LQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALS 219 (509)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHH
Confidence 27899999999988887777654432222 55678899999998754433
No 107
>PLN03150 hypothetical protein; Provisional
Probab=98.12 E-value=4.2e-06 Score=98.08 Aligned_cols=83 Identities=27% Similarity=0.413 Sum_probs=76.0
Q ss_pred cccEEEcCCCCCc-ccChhhhcccCCCEEeccCCccc-ccCcccccCCccceeccccccccCCccccccCCCCCCcEEec
Q 046470 549 SLRVLSLGSNALS-KLPSGISSLVSLHHLDLSWTEIT-GLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRL 626 (888)
Q Consensus 549 ~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l 626 (888)
.++.|+|++|.+. .+|..++.+.+|+.|+|++|.++ .+|..++.+++|+.|++++|++...+|.. +++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788999999988 67999999999999999999998 48999999999999999999987788886 899999999999
Q ss_pred cCCCCC
Q 046470 627 LGCGSN 632 (888)
Q Consensus 627 ~~~~~~ 632 (888)
++|...
T Consensus 498 s~N~l~ 503 (623)
T PLN03150 498 NGNSLS 503 (623)
T ss_pred cCCccc
Confidence 998765
No 108
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=2.9e-06 Score=60.43 Aligned_cols=40 Identities=33% Similarity=0.531 Sum_probs=27.1
Q ss_pred CcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccC
Q 046470 548 SSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLP 587 (888)
Q Consensus 548 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp 587 (888)
++|++|++++|+|+.+|..+++|++|++|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777766777777777777777776654
No 109
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=4.7e-07 Score=101.35 Aligned_cols=194 Identities=22% Similarity=0.252 Sum_probs=131.8
Q ss_pred hcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEE
Q 046470 545 QSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVL 624 (888)
Q Consensus 545 ~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L 624 (888)
..+..+..++++.|.|...-..++.+.+|..|++.+|.|..+...+..+.+|++|++++|.+ ..+.. +..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I-~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI-TKLEG--LSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccc-ccccc--hhhccchhhh
Confidence 45677888889999998866668899999999999999999877689999999999999976 55554 7888999999
Q ss_pred eccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCcccccc
Q 046470 625 RLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLH 704 (888)
Q Consensus 625 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~ 704 (888)
++.+|.+. .+..+..+..|+.+++..+....++... ......++.+.+.++.......
T Consensus 146 ~l~~N~i~------------------~~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i~~i~~-- 203 (414)
T KOG0531|consen 146 NLSGNLIS------------------DISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSIREIEG-- 203 (414)
T ss_pred eeccCcch------------------hccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCchhcccc--
Confidence 99999776 4455666888888888887766655420 0112234444444443322221
Q ss_pred ccccCCcceEEeecCCcceeeecCCccccccccccCC--CccEEEEecCCCCCCC-chhhhccCcceEeeecc
Q 046470 705 LAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFR--SLSIVSVENCEKMKDL-TWLVFVQNLKELEISRC 774 (888)
Q Consensus 705 l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~--~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c 774 (888)
+..+..+..+++..|.+..+ .... .+. +|+.+++.+++ +... ..+..++++..|++.++
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~--~~l~--------~~~~~~L~~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKL--EGLN--------ELVMLHLRELYLSGNR-ISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred hHHHHHHHHhhcccccceec--cCcc--------cchhHHHHHHhcccCc-cccccccccccccccccchhhc
Confidence 22333444445555655533 2111 123 37888888885 3434 45667778888888763
No 110
>PTZ00202 tuzin; Provisional
Probab=98.10 E-value=4e-05 Score=81.54 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=98.5
Q ss_pred CCcccchHHHHHHHHHHhhcCC-CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec---chHHHHHHHcC
Q 046470 154 DHTVVGQELLLYRVWKCITDQD-KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS---TLQDDIGKRIG 229 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~---~l~~~i~~~l~ 229 (888)
.+.|+||+.+.+++...|.+.+ ...+++.|+|++|+|||||++.+.... . .....++.. +++..|+.++|
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~-----~~qL~vNprg~eElLr~LL~ALG 334 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G-----MPAVFVDVRGTEDTLRSVVKALG 334 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C-----ceEEEECCCCHHHHHHHHHHHcC
Confidence 4679999999999999997533 234699999999999999999998765 1 123333333 89999999999
Q ss_pred CChhhhcCCCHHHHHHHHHHHh-----c-cCcEEEEEccCCCccchhhh---CCCCCCCCCCcEEEEEecchhhhhc---
Q 046470 230 FSENWWKKKSPEEKAVDISSIL-----S-RKEFVLLLDDIWKPINLKDM---GVPLQNLNAGSKIVLTTRSVDVCDQ--- 297 (888)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~l---~~~l~~~~~gs~iivTtR~~~v~~~--- 297 (888)
.+. .....++...|.+.+ . +++.+||+-== +-.++..+ ...|.....-+.|++----+.+.-.
T Consensus 335 V~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 335 VPN----VEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred CCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhccc
Confidence 743 223344445554443 2 56677776422 11111111 0122233345667765444433211
Q ss_pred -cCCceeEcCCCChHHHHHHHHHHh
Q 046470 298 -MDAEKVEVSCLAHDEAWKLFQKMV 321 (888)
Q Consensus 298 -~~~~~~~l~~L~~~~a~~Lf~~~~ 321 (888)
..-+.|.+.+++.++|.....+..
T Consensus 410 lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 410 LPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CccceeEecCCCCHHHHHHHHhhcc
Confidence 112278899999999998776654
No 111
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=8.8e-07 Score=87.76 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=35.6
Q ss_pred ccccCCcceEEeecCCcceee-ecCCccccccccccCCCccEEEEecCCCCCCCc-------hhhhccCcceEeee
Q 046470 705 LAYMENLQELHLEDSDLEEMR-IDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT-------WLVFVQNLKELEIS 772 (888)
Q Consensus 705 l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-------~l~~l~~L~~L~L~ 772 (888)
...+|.+..|+++.+++.+.. ++.. ..|+.|..|.+.+++.+..+. .++.+++++.|+=+
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~L--------n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDAL--------NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHH--------cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 344555666677766655321 1111 357888888888887665543 24567777777643
No 112
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=5.8e-05 Score=81.73 Aligned_cols=189 Identities=12% Similarity=0.043 Sum_probs=109.4
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhcccccc-CCCC------EEEEEEec-chHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQ-HHFD------VVIWAAVS-TLQDDIG 225 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~------~~~wv~~~-~l~~~i~ 225 (888)
..++|.+..++.+.+.+.. ++. ..+.++|+.|+||+|+|..+.+..--.. ...+ ...-++-. ..-+.|.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRS--GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hhccChHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 4689999999999998877 444 5688999999999999999887762111 1111 00011111 1111111
Q ss_pred HHcCCCh---------hhh----cCCCHHHHHHHHHHHhc-----cCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEE
Q 046470 226 KRIGFSE---------NWW----KKKSPEEKAVDISSILS-----RKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKI 285 (888)
Q Consensus 226 ~~l~~~~---------~~~----~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 285 (888)
. ...++ +.. ..-..++ +..+.+++. +++.++|+||++.. .....+...+.....++.+
T Consensus 97 ~-~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 97 A-GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred c-cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1 11000 000 1112333 333444442 56679999999754 3344444344333345666
Q ss_pred EEEecch-hhhhccC--CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 286 VLTTRSV-DVCDQMD--AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 286 ivTtR~~-~v~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
|++|.+. .+..... ...+.+.+++.++..+++.+...... .+....+++.++|.|.....+.
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 6666654 3432222 23899999999999999988643211 2233788999999998665553
No 113
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=5.8e-05 Score=82.42 Aligned_cols=184 Identities=11% Similarity=0.085 Sum_probs=104.3
Q ss_pred CcccchHHHHHHHHHHhhcCCC--------CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDK--------NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i 224 (888)
..++|.+..++.+.+.+..... -.+.+.++|+.|+||||+|+.+.+...-.... +..++ ..-..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~~~Cg~C~~C~~~ 79 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----EPGCGECRACRTV 79 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----CCCCCCCHHHHHH
Confidence 3589999999999999876321 34678899999999999999997754110000 00000 000001
Q ss_pred HHHcCCCh-----hhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecc-
Q 046470 225 GKRIGFSE-----NWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRS- 291 (888)
Q Consensus 225 ~~~l~~~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~- 291 (888)
... ..++ ........+++. .+.+.+ .+++-++|+|+++... ....+...+.....+..+|++|.+
T Consensus 80 ~~~-~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 80 LAG-THPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred hcC-CCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 000 0000 000111222322 222222 2455688999998642 233333334333445666665555
Q ss_pred hhhhhccC--CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 292 VDVCDQMD--AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 292 ~~v~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
..+..-.. ...+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|.....+
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 44433222 238999999999999888754321 1 466788999999999755444
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00013 Score=82.98 Aligned_cols=195 Identities=14% Similarity=0.151 Sum_probs=111.0
Q ss_pred CcccchHHHHHHHHHHhhcCCCC-ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCCh-
Q 046470 155 HTVVGQELLLYRVWKCITDQDKN-RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSE- 232 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~- 232 (888)
.+++|.+..++.|...+.. +. .+.+.++|+.|+||||+|+.+.+..- -....+...+-.+ ..-+.|........
T Consensus 16 ~dIiGQe~v~~~L~~ai~~--~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~~pCg~C-~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQE--NRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTGEPCNTC-EQCRKVTQGMHVDVV 91 (624)
T ss_pred HHhcCCHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCCCCCccc-HHHHHHhcCCCCceE
Confidence 3579999888888888866 33 46788999999999999999988762 1110000000000 01111111000000
Q ss_pred --hhhcCCCHHHHHHHHHHH-----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecc-hhhhhccCC--
Q 046470 233 --NWWKKKSPEEKAVDISSI-----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMDA-- 300 (888)
Q Consensus 233 --~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~-- 300 (888)
........++.. .+.+. ..+++-++|+|+++.. ..+..+...+........+|++|.+ ..+......
T Consensus 92 eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRc 170 (624)
T PRK14959 92 EIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRC 170 (624)
T ss_pred EEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhh
Confidence 000011222222 22222 2356679999999764 3344454444333334555555544 444332222
Q ss_pred ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc-cHHHHHHHHh
Q 046470 301 EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP-LALKTVGRAM 357 (888)
Q Consensus 301 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~l 357 (888)
..+++.+++.++....+.+.+.......+ .+.+..|++.++|.+ .|+..+..++
T Consensus 171 q~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 171 QHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 27899999999999999887765432222 677889999999965 6777776554
No 115
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=5.8e-05 Score=81.23 Aligned_cols=193 Identities=15% Similarity=0.086 Sum_probs=111.0
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcccccc-CCCCEEEEE-Ee-c-chHHHHHHH---
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ-HHFDVVIWA-AV-S-TLQDDIGKR--- 227 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv-~~-~-~l~~~i~~~--- 227 (888)
..++|.+...+.+...+..+ .-...+.|+|+.|+||||+|..+.+...... ..+...... .. . ...+.|...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hP 101 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHP 101 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCC
Confidence 46899999999999998762 2345789999999999999999988762100 001111000 00 0 222233221
Q ss_pred ----cCCCh-hh----hcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcE-EEEEec
Q 046470 228 ----IGFSE-NW----WKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSK-IVLTTR 290 (888)
Q Consensus 228 ----l~~~~-~~----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~-iivTtR 290 (888)
+..+. .. ...-..+++. .+.+++ .+++-++|+|+++... ....+...+.....+.. |++|++
T Consensus 102 dl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 102 NLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECC
Confidence 10000 00 0111233333 444444 3567799999998642 23333333332223444 445555
Q ss_pred chhhhhccCC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 291 SVDVCDQMDA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 291 ~~~v~~~~~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
...+...... ..+++.+++.++..+++.+...... --++.+..|++.++|.|.....+.
T Consensus 181 ~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 181 SGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred hhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444322222 2899999999999999988432111 114567889999999998665544
No 116
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=3.5e-05 Score=87.11 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=107.3
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCCh-
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSE- 232 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~- 232 (888)
..++|++..++.+.+++..+ .-.+.+.++|+.|+||||+|+.+++... -....+.. .|.. ...+.+.......-
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~~~~~~--~Cg~C~sCr~i~~~~h~Dii 91 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLNPKDGD--CCNSCSVCESINTNQSVDIV 91 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCC--CCcccHHHHHHHcCCCCceE
Confidence 45899999999999988662 2235788999999999999999988761 11111000 0000 11111111100000
Q ss_pred --hhhcCCCHHHHHHHHHHH-----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-EecchhhhhccC--C
Q 046470 233 --NWWKKKSPEEKAVDISSI-----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSVDVCDQMD--A 300 (888)
Q Consensus 233 --~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~~--~ 300 (888)
........+++.. +.+. ..+++-++|+|+++.. ..+..+...+........+|+ |+....+..... +
T Consensus 92 eIdaas~igVd~IRe-Ii~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRc 170 (605)
T PRK05896 92 ELDAASNNGVDEIRN-IIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRC 170 (605)
T ss_pred EeccccccCHHHHHH-HHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhh
Confidence 0000112222221 2121 1234457999999753 334444444433334555554 444444432222 2
Q ss_pred ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc-HHHHHHH
Q 046470 301 EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL-ALKTVGR 355 (888)
Q Consensus 301 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~ 355 (888)
..+++.+++.++....+.+.+.......+ .+.+..+++.++|.+- |+..+-.
T Consensus 171 q~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 171 QRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 38899999999999999887755432222 5678899999999664 4444443
No 117
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.05 E-value=9.6e-05 Score=72.92 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=91.2
Q ss_pred HHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhcccccc-------------------CCCCEEEEEEecchHHHHHH
Q 046470 167 VWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQ-------------------HHFDVVIWAAVSTLQDDIGK 226 (888)
Q Consensus 167 l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~~~l~~~i~~ 226 (888)
+.+.+.. +.. ..+.++|+.|+||||+|+.+.+...... .+.|.. ++...
T Consensus 4 l~~~i~~--~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~-------- 72 (188)
T TIGR00678 4 LKRALEK--GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPE-------- 72 (188)
T ss_pred HHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-Eeccc--------
Confidence 4445544 344 6799999999999999999988762110 111111 11100
Q ss_pred HcCCChhhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecch-hhhhcc
Q 046470 227 RIGFSENWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSV-DVCDQM 298 (888)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~ 298 (888)
. .....+++.+ +.+.+ .+.+-++|+||++.. ...+.+...+......+.+|++|++. .+....
T Consensus 73 -----~---~~~~~~~i~~-i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 73 -----G---QSIKVDQVRE-LVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred -----c---CcCCHHHHHH-HHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 0 1112223222 12222 345678999999754 23444544444444466677766643 332222
Q ss_pred CC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccH
Q 046470 299 DA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLA 349 (888)
Q Consensus 299 ~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 349 (888)
.. ..+++.+++.++..+.+.+. + .+ ++.+..|++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-g-----i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-G-----IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-C-----CC---HHHHHHHHHHcCCCccc
Confidence 22 28899999999999888876 1 11 56789999999998853
No 118
>PRK06620 hypothetical protein; Validated
Probab=98.04 E-value=4.5e-05 Score=76.29 Aligned_cols=132 Identities=14% Similarity=0.047 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEE
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVL 258 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 258 (888)
+.+.|+|++|+|||+|++.+++.. .. .++.... . . . +.+ ...-+|
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~~~~----------------~--~-~-------~~~-~~~d~l 89 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIKDIF----------------F--N-E-------EIL-EKYNAF 89 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcchhh----------------h--c-h-------hHH-hcCCEE
Confidence 679999999999999999987765 11 1111000 0 0 0 111 233578
Q ss_pred EEccCCCccc--hhhhCCCCCCCCCCcEEEEEecchh-------hhhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCC
Q 046470 259 LLDDIWKPIN--LKDMGVPLQNLNAGSKIVLTTRSVD-------VCDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDS 328 (888)
Q Consensus 259 VlDdv~~~~~--~~~l~~~l~~~~~gs~iivTtR~~~-------v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 328 (888)
++||++..++ +-.+...+. ..|..||+|++... ..+++... ++++++++.++-..++.+.+.......
T Consensus 90 liDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l 167 (214)
T PRK06620 90 IIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTI 167 (214)
T ss_pred EEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 8999974322 111111111 35678999887532 34455555 899999999998888888776433222
Q ss_pred CCChHHHHHHHHHHhCCCccHH
Q 046470 329 HASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 329 ~~~~~~~~~~i~~~c~g~Plai 350 (888)
+ +++..-|++.+.|.--.+
T Consensus 168 ~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 168 S---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred C---HHHHHHHHHHccCCHHHH
Confidence 2 677788888776654433
No 119
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=9.2e-05 Score=85.12 Aligned_cols=193 Identities=13% Similarity=0.107 Sum_probs=110.8
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCC---EEEEEEec-chHHHHHHHcCC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD---VVIWAAVS-TLQDDIGKRIGF 230 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~---~~~wv~~~-~l~~~i~~~l~~ 230 (888)
.+++|.+..++.+.+.+..+ .-...+.++|+.|+||||+|+.+.+..- -..... ..+-.|.. .--+.|...-..
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 45899999999999988762 2244788999999999999999988761 111100 00000000 111111111100
Q ss_pred Ch---hhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEe-cchhhhhccC
Q 046470 231 SE---NWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTT-RSVDVCDQMD 299 (888)
Q Consensus 231 ~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~~~ 299 (888)
.- ........+++.. +.+.+ .+++-++|+|+++... ....+...+.....++++|++| ....+.....
T Consensus 102 Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 102 DVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred ceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHH
Confidence 00 0001122333222 22222 2455689999997543 3444544444444566666544 4444433222
Q ss_pred C--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 300 A--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 300 ~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
. ..+++.+++.++....+.+.+.......+ .+....|++.++|.+.-+...
T Consensus 181 SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 181 SRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 28899999999999999988765432222 577889999999988655443
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.0001 Score=84.87 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=108.7
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEE-----ec--chHHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAA-----VS--TLQDDIGK 226 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-----~~--~l~~~i~~ 226 (888)
..++|.+..++.+.+.+.. +.+ ..+.++|+.|+||||+|+.+.+..- -....+.-.|.. ++ ..-+.+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhc
Confidence 4589999999999888876 444 5588999999999999999988761 111111000110 00 11111111
Q ss_pred HcCCChhhh---cCCCHHHHHHHHHHH----hccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEE-Eecchhhhh
Q 046470 227 RIGFSENWW---KKKSPEEKAVDISSI----LSRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVL-TTRSVDVCD 296 (888)
Q Consensus 227 ~l~~~~~~~---~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~ 296 (888)
.-...-..+ .....+++...+... ..+++-++|+||++... ....+...+......+.+|+ |++...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 000000000 111233333322222 23456689999997643 34445444443334555554 444444433
Q ss_pred ccC--CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc-HHHHHH
Q 046470 297 QMD--AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL-ALKTVG 354 (888)
Q Consensus 297 ~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 354 (888)
... ...+++.+++.++....+.+.+.......+ .+.+..|++.++|..- |+..+-
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHH
Confidence 222 238999999999998888877654332222 6788999999999554 444443
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.03 E-value=5.6e-05 Score=78.77 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=81.3
Q ss_pred cccchHHHHHHHHHHhh---c----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--ch
Q 046470 156 TVVGQELLLYRVWKCIT---D----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TL 220 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~---~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l 220 (888)
.++|.+..+++|.+... - ..+....+.++|++|+||||+|+.+++.... ...-....++.++ ++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~-~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE-MNVLSKGHLIEVERADL 85 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh-cCcccCCceEEecHHHh
Confidence 47888877766653321 1 1234567889999999999999999876511 1111111123232 22
Q ss_pred HHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc----------chhhhCCCCCCCCCCcEEEEEec
Q 046470 221 QDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI----------NLKDMGVPLQNLNAGSKIVLTTR 290 (888)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtR 290 (888)
... .. ..........+... ..-+|++|+++... ..+.+...+........+|+++.
T Consensus 86 ~~~---~~--------g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 86 VGE---YI--------GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred hhh---hc--------cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 211 11 11111122222221 23489999997521 22333333333333335555554
Q ss_pred chhh----------hhccCCceeEcCCCChHHHHHHHHHHhhccc
Q 046470 291 SVDV----------CDQMDAEKVEVSCLAHDEAWKLFQKMVERST 325 (888)
Q Consensus 291 ~~~v----------~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~ 325 (888)
..+. .+++ ...+++++++.++-.+++.+.+....
T Consensus 152 ~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRF-PISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred cchhHHHHhcChHHHhcc-ceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 3322 2222 12678999999999999998876543
No 122
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=6.4e-05 Score=85.75 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=106.9
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccC------------------CCCEEEEE
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQH------------------HFDVVIWA 215 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 215 (888)
.+++|.+..++.+..++.. ++. +.+.++|+.|+||||+|+.+.+..--... .|.-.+++
T Consensus 16 ~divGq~~v~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQ--QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 3589999999999998876 444 46789999999999999999877611000 01111111
Q ss_pred EecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEE
Q 046470 216 AVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLT 288 (888)
Q Consensus 216 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivT 288 (888)
..+ .....+++.. +.+.. .+++-++|+|+++... ....+...+......+.+|++
T Consensus 94 ~~~-----------------~~~~vd~ir~-l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 94 DAA-----------------SNTQVDAMRE-LLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred ecc-----------------ccCCHHHHHH-HHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 111 1112222222 22222 3566799999998643 344444444433445666655
Q ss_pred ecc-hhhhhccCC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc-HHHHHHH
Q 046470 289 TRS-VDVCDQMDA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL-ALKTVGR 355 (888)
Q Consensus 289 tR~-~~v~~~~~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~ 355 (888)
|.+ ..+...... ..+++.+++.++....+.+.+....... -++....|++.++|.+- |+..+-.
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 543 333322221 2789999999999998888775433222 25667889999999775 4444433
No 123
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=1.5e-07 Score=103.55 Aligned_cols=130 Identities=25% Similarity=0.314 Sum_probs=97.5
Q ss_pred ccccceEEEEecCCCccCCC-CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEe
Q 046470 500 EWEGAKRISLRGNRFDSLSE-IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLD 577 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~l~~-~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 577 (888)
.|.++...++++|.+..+.. +.-++.|+.|+|+.|++.+.. ++..|++|+.|||++|.+..+|.- ...+. |+.|+
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeee
Confidence 46778888888888776543 455688899999999887765 588899999999999988877642 23343 89999
Q ss_pred ccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCC
Q 046470 578 LSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 578 L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
+++|.+++| .++.+|++|+.||+++|-+...---..++.|..|+.|.+.||...+
T Consensus 239 lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999988887 4688899999999998844322111226778888888888887654
No 124
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00015 Score=79.98 Aligned_cols=175 Identities=14% Similarity=0.176 Sum_probs=102.8
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccc-----cCCCCEEEEEEecchHHHHHHHcC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHE-----QHHFDVVIWAAVSTLQDDIGKRIG 229 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-----~~~f~~~~wv~~~~l~~~i~~~l~ 229 (888)
.+++|.+...+.+.+.+..+ .-.+.+.++|+.|+||||+|+.+.+..... ...|...+ +...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~----------- 83 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELD----------- 83 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEec-----------
Confidence 35799999999999998762 234588899999999999999998765210 01121111 0000
Q ss_pred CChhhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEe-cchhhhhccC--C
Q 046470 230 FSENWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTT-RSVDVCDQMD--A 300 (888)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~~~--~ 300 (888)
. ......++....+.+. ..+++-++|+|+++... .+..+...+........+|++| ....+..... .
T Consensus 84 --~--~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~ 159 (367)
T PRK14970 84 --A--ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159 (367)
T ss_pred --c--ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcc
Confidence 0 0111122222222111 12455689999987542 2444433332223345555554 3333322222 2
Q ss_pred ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccH
Q 046470 301 EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLA 349 (888)
Q Consensus 301 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 349 (888)
..++..+++.++....+.+.+.......+ ++.+..|++.++|.+-.
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRD 205 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHH
Confidence 27899999999999999887765442222 57888899999986553
No 125
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.98 E-value=1.4e-05 Score=84.75 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--------chHHHHHHHcCCChhhhcCCCHHH-----HH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--------TLQDDIGKRIGFSENWWKKKSPEE-----KA 244 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--------~l~~~i~~~l~~~~~~~~~~~~~~-----~~ 244 (888)
-....|+|++|+||||||+++|+.. . ..+|+.++||.+. ++++.|...+-... ++...... .+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPAERHVQVAEMV 244 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCCHHHHHHHHHHH
Confidence 3568899999999999999999998 3 3389999999887 34444432111110 11111111 11
Q ss_pred HHHHHH--hccCcEEEEEccCCCc
Q 046470 245 VDISSI--LSRKEFVLLLDDIWKP 266 (888)
Q Consensus 245 ~~l~~~--l~~k~~LlVlDdv~~~ 266 (888)
....++ -.++.++|++|++...
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHH
Confidence 112222 2579999999999643
No 126
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00014 Score=84.25 Aligned_cols=173 Identities=17% Similarity=0.192 Sum_probs=107.9
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhcccc--------------------ccCCCCEEE
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCH--------------------EQHHFDVVI 213 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~--------------------~~~~f~~~~ 213 (888)
.+++|.+..++.+..++.. +.. +.+.++|+.|+||||+|+.+.....- ...+|+..
T Consensus 17 ~~viGq~~~~~~L~~~i~~--~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~- 93 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIAT--NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH- 93 (614)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-
Confidence 3589999999999999877 444 56889999999999999998876510 01123321
Q ss_pred EEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE
Q 046470 214 WAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL 287 (888)
Q Consensus 214 wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 287 (888)
.+..+ .....+++...+.+. ..+++-++|+|++... ..+..+...+..-..++.+|+
T Consensus 94 ~ld~~-----------------~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 ELDAA-----------------SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred Eeccc-----------------ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 11111 111223333222211 1245568899999764 335555444444344566555
Q ss_pred -EecchhhhhccCC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 288 -TTRSVDVCDQMDA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 288 -TtR~~~v~~~~~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
||+...+...... ..+++.+++.++....+.+.+.......+ .+.+..|++.++|..--+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5455555443332 28999999999999999887765442222 567899999999966433
No 127
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=0.00027 Score=80.09 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=97.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEE
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFV 257 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 257 (888)
...+.|+|..|+|||.|++++++... ....-..+++++..++..++...+.. ... ..+++.+++ -=+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yitaeef~~el~~al~~-------~~~----~~f~~~y~~-~DL 380 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSSEEFTNEFINSIRD-------GKG----DSFRRRYRE-MDI 380 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeHHHHHHHHHHHHHh-------ccH----HHHHHHhhc-CCE
Confidence 35689999999999999999999872 21222356777777766666554421 111 223333332 357
Q ss_pred EEEccCCCcc---chh-hhCCCCCC-CCCCcEEEEEecc---------hhhhhccCCc-eeEcCCCChHHHHHHHHHHhh
Q 046470 258 LLLDDIWKPI---NLK-DMGVPLQN-LNAGSKIVLTTRS---------VDVCDQMDAE-KVEVSCLAHDEAWKLFQKMVE 322 (888)
Q Consensus 258 lVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~ 322 (888)
|||||+.... .|. .+...+.. ...|..|||||.. ..+.+++... .+++.+.+.+.-..++.+++.
T Consensus 381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 8999997531 221 12111111 1235568888875 2234555555 899999999999999999886
Q ss_pred cccCCCCCChHHHHHHHHHHhCCCccH
Q 046470 323 RSTLDSHASIPELAKTLARECGGLPLA 349 (888)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~g~Pla 349 (888)
......+ +++..-|++.+.+..-.
T Consensus 461 ~r~l~l~---~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 461 QEQLNAP---PEVLEFIASRISRNIRE 484 (617)
T ss_pred hcCCCCC---HHHHHHHHHhccCCHHH
Confidence 5543333 67778888777665433
No 128
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00015 Score=86.34 Aligned_cols=192 Identities=10% Similarity=0.102 Sum_probs=109.7
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccC-CC-CEEEEEEecchHHHHHHH----
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQH-HF-DVVIWAAVSTLQDDIGKR---- 227 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~f-~~~~wv~~~~l~~~i~~~---- 227 (888)
.++||.+..++.|..++.. +++ +.+.++|+.|+||||+|+.+.+...-... .. .|- .|-+ -..|...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~--~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg--~C~s--C~~~~~g~~~~ 88 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDS--GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG--ECDS--CVALAPGGPGS 88 (824)
T ss_pred HHhcCcHHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc--ccHH--HHHHHcCCCCC
Confidence 3589999999999999876 444 56889999999999999999887621110 00 000 0000 0001000
Q ss_pred cCCC-hhhhcCCCHHHHHHHHHHH-----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEe-cchhhhhcc
Q 046470 228 IGFS-ENWWKKKSPEEKAVDISSI-----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTT-RSVDVCDQM 298 (888)
Q Consensus 228 l~~~-~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~~ 298 (888)
..+. .+......++++.. +.+. ..++.-++|||+++.. ..+..|...+..-...+.+|++| ....+..-+
T Consensus 89 ~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TI 167 (824)
T PRK07764 89 LDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTI 167 (824)
T ss_pred CcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 0000 00001112333322 2222 2355668999999864 33444544454444566666555 444454333
Q ss_pred C--CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc-HHHHHHHH
Q 046470 299 D--AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL-ALKTVGRA 356 (888)
Q Consensus 299 ~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~~ 356 (888)
. +..|++..++.++..+.+.+.+.......+ .+....|++.++|.+. ++..+-.+
T Consensus 168 rSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 168 RSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred HhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 238899999999999988887654432222 5667889999999884 33333333
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00013 Score=81.55 Aligned_cols=176 Identities=14% Similarity=0.182 Sum_probs=106.0
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhcccccc--------------------CCCCEEE
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQ--------------------HHFDVVI 213 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~--------------------~~f~~~~ 213 (888)
.+++|.+..++.+.+++.. +.. +.+.++|+.|+||||+|+.+.+...... .+++. +
T Consensus 17 ~diiGq~~~v~~L~~~i~~--~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~-~ 93 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRF--NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV-L 93 (451)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce-E
Confidence 4689999999999998876 444 5688999999999999999988651110 01111 1
Q ss_pred EEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEE
Q 046470 214 WAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIV 286 (888)
Q Consensus 214 wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii 286 (888)
++... .....+++. .+.+.+ .+++-++|+|+++.. .....+...+.....+..+|
T Consensus 94 ~i~g~-----------------~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 94 EIDGA-----------------SHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred Eeecc-----------------ccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 11100 011122222 122222 356778999998754 23334433443333456666
Q ss_pred EEec-chhhhhccC--CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc-cHHHHHH
Q 046470 287 LTTR-SVDVCDQMD--AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP-LALKTVG 354 (888)
Q Consensus 287 vTtR-~~~v~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~ 354 (888)
++|. ...+..... ...+++.+++.++....+.+.+.......+ ++.+..|++.++|.+ .|+..+-
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 6553 333332222 227899999999999988887654332222 577889999999966 4444443
No 130
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00018 Score=82.29 Aligned_cols=194 Identities=12% Similarity=0.102 Sum_probs=110.3
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHcCCC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRIGFS 231 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l~~~ 231 (888)
.+++|.+..++.|..++.. +++ +.+.++|+.|+||||+|+.+.+..--. ...+. -.++ ..-..|...-+..
T Consensus 13 ~eivGq~~i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~~---~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPTA---TPCGVCESCVALAPNGPGS 86 (584)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCCC---CcccccHHHHHhhcccCCC
Confidence 4689999999999999876 444 457899999999999999998875111 10000 0000 0011111000000
Q ss_pred -----hhhhcCCCHHHHHHHHHHH-----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-Eecchhhhhcc
Q 046470 232 -----ENWWKKKSPEEKAVDISSI-----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSVDVCDQM 298 (888)
Q Consensus 232 -----~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~ 298 (888)
.+.......++.. .+.+. ..+++-++|+|+++.. .....+...+........+|+ ||....+..-.
T Consensus 87 ~dvieidaas~~gvd~iR-el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 87 IDVVELDAASHGGVDDTR-ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred ceEEEeccccccCHHHHH-HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 0000111222222 12221 1355668999999754 344444444444344555555 54445444322
Q ss_pred C--CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc-HHHHHHHHhc
Q 046470 299 D--AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL-ALKTVGRAMK 358 (888)
Q Consensus 299 ~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~~l~ 358 (888)
. +..+++.+++.++..+.+.+.+.......+ .+.+..|++.++|.+- |+..+-.++.
T Consensus 166 ~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 166 RSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 2 338999999999999888887765432222 5677889999999774 5555554443
No 131
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00017 Score=80.38 Aligned_cols=151 Identities=12% Similarity=0.148 Sum_probs=92.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEE
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFV 257 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 257 (888)
...+.|+|+.|+|||+|++++++... .....+++++...+...+...+... . ...+++.++ +.-+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~~~f~~~~~~~l~~~-------~----~~~f~~~~~-~~dv 205 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRSELFTEHLVSAIRSG-------E----MQRFRQFYR-NVDA 205 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeHHHHHHHHHHHHhcc-------h----HHHHHHHcc-cCCE
Confidence 35688999999999999999999872 1223456676666666665554311 1 122334333 3458
Q ss_pred EEEccCCCccc----hhhhCCCCCC-CCCCcEEEEEecc---------hhhhhccCCc-eeEcCCCChHHHHHHHHHHhh
Q 046470 258 LLLDDIWKPIN----LKDMGVPLQN-LNAGSKIVLTTRS---------VDVCDQMDAE-KVEVSCLAHDEAWKLFQKMVE 322 (888)
Q Consensus 258 lVlDdv~~~~~----~~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~ 322 (888)
|++||+..... .+.+...+.. ...|..||+||.. +.+.+++... .+++.+++.++-..++.+.+.
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 88999865321 1122111110 1135568888754 2234445544 889999999999999998876
Q ss_pred cccCCCCCChHHHHHHHHHHhCCC
Q 046470 323 RSTLDSHASIPELAKTLARECGGL 346 (888)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~g~ 346 (888)
......+ +++..-|++.+.|.
T Consensus 286 ~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 286 ALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HcCCCCC---HHHHHHHHHhcCCC
Confidence 5432222 56666677766643
No 132
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=8.9e-05 Score=86.18 Aligned_cols=191 Identities=13% Similarity=0.139 Sum_probs=109.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHcCCCh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRIGFSE 232 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l~~~~ 232 (888)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+.+... -...... +-.++ ...+.|........
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~~--~~~c~~c~~c~~i~~~~~~d~ 91 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDPK--GRPCGTCEMCRAIAEGSAVDV 91 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC--CCCCccCHHHHHHhcCCCCeE
Confidence 46899999999998888762 2235678999999999999999987761 1110000 00000 22222222111100
Q ss_pred ---hhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecc-hhhhhccCC-
Q 046470 233 ---NWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMDA- 300 (888)
Q Consensus 233 ---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~- 300 (888)
........+++. .+.+.+ .+++-++|+|+++.. ...+.+...+......+.+|++|.+ ..+......
T Consensus 92 ~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR 170 (585)
T PRK14950 92 IEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170 (585)
T ss_pred EEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc
Confidence 000112222222 222222 245678999999754 3344444444333345666665543 333322222
Q ss_pred -ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 301 -EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 301 -~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
..+++.+++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 171 ~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 171 CQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 27889999999999988888765432222 577889999999988655443
No 133
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.89 E-value=8.7e-06 Score=83.01 Aligned_cols=162 Identities=20% Similarity=0.195 Sum_probs=113.6
Q ss_pred cccccceEEEEecCCCcc--CCC----CCCCCchhhhhhccCCcccccchH-------------HhcCCcccEEEcCCCC
Q 046470 499 EEWEGAKRISLRGNRFDS--LSE----IPTSPRLITLLLIANSIDEITDGF-------------FQSMSSLRVLSLGSNA 559 (888)
Q Consensus 499 ~~~~~lr~L~l~~n~~~~--l~~----~~~~~~Lr~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~Ls~~~ 559 (888)
..+++++.++|++|.+.. ++. +..|..|+.|.+.+|.+....... ...-+.||++...+|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 344589999999997743 222 366899999999999865444333 2345789999999998
Q ss_pred CcccC-----hhhhcccCCCEEeccCCcccc-----cCcccccCCccceeccccccccCCcc---ccccCCCCCCcEEec
Q 046470 560 LSKLP-----SGISSLVSLHHLDLSWTEITG-----LPQELKALEKLRYLNLEHAYMLSIIP---HQLISGFSKLEVLRL 626 (888)
Q Consensus 560 i~~lp-----~~i~~L~~L~~L~L~~~~i~~-----Lp~~i~~L~~L~~L~l~~~~~l~~lp---~~~i~~L~~L~~L~l 626 (888)
+..-+ ..+...+.|+.+.+..|.|.. +...+..+++|++||++.|.+...-. ...++.+++|++|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 87544 346777899999999987653 45678899999999999997643221 112677889999999
Q ss_pred cCCCCCCcccccccCcccccchhhHHHHhhc-CCCCceEEEEEechh
Q 046470 627 LGCGSNCVTVTEEEGNVLCDDAGLLMKELLG-LKHLNFLSWSFRSSL 672 (888)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-L~~L~~L~l~~~~~~ 672 (888)
++|..... ........+.. .++|+.+.+.+|.+.
T Consensus 249 ~dcll~~~------------Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 249 GDCLLENE------------GAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccc------------cHHHHHHHHhccCCCCceeccCcchhH
Confidence 99976531 12333444433 577777777776653
No 134
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=2.5e-06 Score=84.63 Aligned_cols=105 Identities=24% Similarity=0.263 Sum_probs=63.0
Q ss_pred hhhhhhccCCcccccc--hHHhcCCcccEEEcCCCCCcc---cChhhhcccCCCEEeccCCcccccCccc-ccCCcccee
Q 046470 526 LITLLLIANSIDEITD--GFFQSMSSLRVLSLGSNALSK---LPSGISSLVSLHHLDLSWTEITGLPQEL-KALEKLRYL 599 (888)
Q Consensus 526 Lr~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~~~i~~---lp~~i~~L~~L~~L~L~~~~i~~Lp~~i-~~L~~L~~L 599 (888)
+..|.+.++.+..... .+-..++.++.|||.+|.|+. +-..+.+|++|++|+|+.|.+..--.++ ..+.+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 3455555665544432 223457788888888888773 3444567888888888888655421111 345677777
Q ss_pred ccccccccCCccccccCCCCCCcEEeccCCC
Q 046470 600 NLEHAYMLSIIPHQLISGFSKLEVLRLLGCG 630 (888)
Q Consensus 600 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 630 (888)
-|.++.....-....+..++.+++|+++.|+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 7777654222222335566667777776553
No 135
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00026 Score=79.67 Aligned_cols=191 Identities=12% Similarity=0.121 Sum_probs=108.8
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccc-cCCCCEEEEEEecchHHHHHHHcCCC-
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHE-QHHFDVVIWAAVSTLQDDIGKRIGFS- 231 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~~f~~~~wv~~~~l~~~i~~~l~~~- 231 (888)
..++|.+...+.+...+.. ++. +++.++|+.|+||||+|+.+.+..... ...+. -+-+|-+ -..+.......
T Consensus 14 deiiGqe~v~~~L~~~I~~--grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~-pC~~C~~--C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDN--NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST-PCDTCIQ--CQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC-CCcccHH--HHHHhhcCCCeE
Confidence 4589999999999998876 444 467899999999999999988765110 00100 0000000 00000000000
Q ss_pred --hhhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecch-hhhhcc--CC
Q 046470 232 --ENWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSV-DVCDQM--DA 300 (888)
Q Consensus 232 --~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~--~~ 300 (888)
.........+++...+... ..+++-++|+|+++.. +....+...+......+++|++|.+. .+.... .+
T Consensus 89 ~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc 168 (535)
T PRK08451 89 IEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRT 168 (535)
T ss_pred EEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhc
Confidence 0000111233333333221 1245668999999764 23444444443334566767666552 222211 12
Q ss_pred ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 301 EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 301 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
..+++.+++.++....+.+.+.......+ ++.+..|++.++|.+--+..+
T Consensus 169 ~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 169 QHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 38899999999999998887765432222 678889999999988554444
No 136
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.00041 Score=74.76 Aligned_cols=147 Identities=20% Similarity=0.238 Sum_probs=93.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcE
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEF 256 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 256 (888)
....+.|||..|.|||.|++++.+.. .....=..+++++..+...++...+.. .-...+++.. .-=
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~-~~~~~~a~v~y~~se~f~~~~v~a~~~-----------~~~~~Fk~~y--~~d 177 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA-LANGPNARVVYLTSEDFTNDFVKALRD-----------NEMEKFKEKY--SLD 177 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH-HhhCCCceEEeccHHHHHHHHHHHHHh-----------hhHHHHHHhh--ccC
Confidence 47899999999999999999999987 222222245555555555555544421 1223455555 344
Q ss_pred EEEEccCCCcc---ch-hhh---CCCCCCCCCCcEEEEEecc---------hhhhhccCCc-eeEcCCCChHHHHHHHHH
Q 046470 257 VLLLDDIWKPI---NL-KDM---GVPLQNLNAGSKIVLTTRS---------VDVCDQMDAE-KVEVSCLAHDEAWKLFQK 319 (888)
Q Consensus 257 LlVlDdv~~~~---~~-~~l---~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~-~~~l~~L~~~~a~~Lf~~ 319 (888)
++++||++-.. .| +++ ...+.. .|-.||+|++. ..+.+++... .+.+.+.+.+....++.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 89999997532 12 122 222222 34489999865 3445666666 899999999999999999
Q ss_pred HhhcccCCCCCChHHHHHHHHHH
Q 046470 320 MVERSTLDSHASIPELAKTLARE 342 (888)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~i~~~ 342 (888)
++.......+ +++..-|++.
T Consensus 256 ka~~~~~~i~---~ev~~~la~~ 275 (408)
T COG0593 256 KAEDRGIEIP---DEVLEFLAKR 275 (408)
T ss_pred HHHhcCCCCC---HHHHHHHHHH
Confidence 8766554444 4444444443
No 137
>CHL00181 cbbX CbbX; Provisional
Probab=97.88 E-value=0.00032 Score=73.56 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcE
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEF 256 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 256 (888)
..+.++|++|+||||+|+.+++.. ...+.-...-|+.++ ++.... .+ .+.......+.+. ..-
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~~~l~~~~---~g--------~~~~~~~~~l~~a---~gg 124 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTRDDLVGQY---IG--------HTAPKTKEVLKKA---MGG 124 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecHHHHHHHH---hc--------cchHHHHHHHHHc---cCC
Confidence 358889999999999999998765 111111111244444 332221 11 1111111122221 235
Q ss_pred EEEEccCCCc-----------cchhhhCCCCCCCCCCcEEEEEecchhh----------hhccCCceeEcCCCChHHHHH
Q 046470 257 VLLLDDIWKP-----------INLKDMGVPLQNLNAGSKIVLTTRSVDV----------CDQMDAEKVEVSCLAHDEAWK 315 (888)
Q Consensus 257 LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v----------~~~~~~~~~~l~~L~~~~a~~ 315 (888)
+|++|++... +....+...+.+...+.+||+++....+ .+++ ...+.+.+++.+|..+
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~-~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRI-ANHVDFPDYTPEELLQ 203 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhC-CceEEcCCcCHHHHHH
Confidence 9999999642 1122222233333445667777754333 1211 1278999999999999
Q ss_pred HHHHHhhccc
Q 046470 316 LFQKMVERST 325 (888)
Q Consensus 316 Lf~~~~~~~~ 325 (888)
++.+.+....
T Consensus 204 I~~~~l~~~~ 213 (287)
T CHL00181 204 IAKIMLEEQQ 213 (287)
T ss_pred HHHHHHHHhc
Confidence 9998876543
No 138
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.0002 Score=82.82 Aligned_cols=192 Identities=13% Similarity=0.152 Sum_probs=106.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCC-Chh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGF-SEN 233 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~-~~~ 233 (888)
..++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.++...-.......+ -.+..-.......... ...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~---~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL---EPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC---CchhHHHHhhcCCCcEEEEe
Confidence 35899999999999998762 234567899999999999999998765110100000 0000000000000000 000
Q ss_pred hhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEE-EEecchhhhhccC--Ccee
Q 046470 234 WWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIV-LTTRSVDVCDQMD--AEKV 303 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtR~~~v~~~~~--~~~~ 303 (888)
.......+++ ..+.+.+ .+++-++|+|+++.. ..+..+...+........+| +|++...+..... +..+
T Consensus 94 aasn~~vd~I-ReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~i 172 (725)
T PRK07133 94 AASNNGVDEI-RELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRF 172 (725)
T ss_pred ccccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeE
Confidence 0001112222 2222322 356679999999754 34444444443333444544 4555555543222 2389
Q ss_pred EcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc-HHHHHH
Q 046470 304 EVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL-ALKTVG 354 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 354 (888)
++.+++.++....+.+.+........ .+.+..|++.++|.+- |+..+.
T Consensus 173 eF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 173 NFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999988887654332222 5668899999999764 444443
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.87 E-value=0.00019 Score=86.64 Aligned_cols=176 Identities=15% Similarity=0.175 Sum_probs=97.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCC----CCEEEE-EEecchHHHHHHHcC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHH----FDVVIW-AAVSTLQDDIGKRIG 229 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~w-v~~~~l~~~i~~~l~ 229 (888)
+.++||+.+++++++.|.. ....-+.++|++|+||||+|+.+++... .... .+..+| +..+.+. ....
T Consensus 187 d~~iGr~~ei~~~i~~l~r--~~~~n~lLvG~pGvGKTal~~~La~~i~-~~~v~~~l~~~~i~~l~l~~l~----ag~~ 259 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR--RRQNNPILTGEAGVGKTAVVEGLALRIA-AGDVPPALRNVRLLSLDLGLLQ----AGAS 259 (852)
T ss_pred CcccCCHHHHHHHHHHHhc--CCcCceeEECCCCCCHHHHHHHHHHHHh-hCCCCccccCCeEEEeehhhhh----cccc
Confidence 3579999999999999977 4445567999999999999999998762 1111 122232 3332211 0000
Q ss_pred CChhhhcCCCHHHHHHHHHHHh--ccCcEEEEEccCCCcc---------chhhhCCCCCCCCCC-cEEEEEecchhh---
Q 046470 230 FSENWWKKKSPEEKAVDISSIL--SRKEFVLLLDDIWKPI---------NLKDMGVPLQNLNAG-SKIVLTTRSVDV--- 294 (888)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~iivTtR~~~v--- 294 (888)
.....++....+.+.+ .+++.+|++|++.... +...+..+. -..| -++|-||...+.
T Consensus 260 ------~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e~~~~ 331 (852)
T TIGR03345 260 ------VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAEYKKY 331 (852)
T ss_pred ------cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHHHhhh
Confidence 0111122222222222 2468999999986531 111122222 2233 445555554322
Q ss_pred -------hhccCCceeEcCCCChHHHHHHHHHHhhcccC-CCCCChHHHHHHHHHHhCCCc
Q 046470 295 -------CDQMDAEKVEVSCLAHDEAWKLFQKMVERSTL-DSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 295 -------~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~g~P 347 (888)
.+++ ..+.+.+++.++..+++......... ..-.--.+....+++.+.+..
T Consensus 332 ~~~d~AL~rRf--~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 332 FEKDPALTRRF--QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhccHHHHHhC--eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 2222 38999999999999997554422110 000112556677777776643
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.86 E-value=0.00027 Score=74.20 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=70.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEE
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLL 259 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlV 259 (888)
-+.++|++|+||||+|+.++... .........-++.++. .++...+. ..+.......+.+ -..-+|+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l-~~~g~~~~~~~v~v~~--~~l~~~~~-------g~~~~~~~~~~~~---a~~gvL~ 126 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL-HRLGYVRKGHLVSVTR--DDLVGQYI-------GHTAPKTKEILKR---AMGGVLF 126 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH-HHcCCcccceEEEecH--HHHhHhhc-------ccchHHHHHHHHH---ccCcEEE
Confidence 58899999999999998887765 2222211112444441 12221111 1111111222222 1346899
Q ss_pred EccCCCc-----------cchhhhCCCCCCCCCCcEEEEEecchhhhh--ccC-------CceeEcCCCChHHHHHHHHH
Q 046470 260 LDDIWKP-----------INLKDMGVPLQNLNAGSKIVLTTRSVDVCD--QMD-------AEKVEVSCLAHDEAWKLFQK 319 (888)
Q Consensus 260 lDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~--~~~-------~~~~~l~~L~~~~a~~Lf~~ 319 (888)
||++... +.+..+...+.....+.+||+++.....-. ... ...+++.+++.+|-..++..
T Consensus 127 iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~ 206 (284)
T TIGR02880 127 IDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGL 206 (284)
T ss_pred EechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHH
Confidence 9999632 112233333333344566666665432211 111 22789999999999999988
Q ss_pred Hhhcc
Q 046470 320 MVERS 324 (888)
Q Consensus 320 ~~~~~ 324 (888)
.+...
T Consensus 207 ~l~~~ 211 (284)
T TIGR02880 207 MLKEQ 211 (284)
T ss_pred HHHHh
Confidence 87553
No 141
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00032 Score=79.10 Aligned_cols=177 Identities=13% Similarity=0.139 Sum_probs=104.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccC-C-CCE----------------EEEEE
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQH-H-FDV----------------VIWAA 216 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~-f~~----------------~~wv~ 216 (888)
..++|.+..++.+.+++... .-.+.+.++|+.|+||||+|+.++........ . ..| .+++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 35799999999999998762 22356778999999999999998876511000 0 011 11111
Q ss_pred ecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-E
Q 046470 217 VSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-T 288 (888)
Q Consensus 217 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-T 288 (888)
.+ .....++. ..+.+.. .+++-++|+|+++.. .....+...+........+|+ |
T Consensus 95 aa-----------------s~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t 156 (486)
T PRK14953 95 AA-----------------SNRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT 156 (486)
T ss_pred Cc-----------------cCCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 10 11112211 1222222 356679999999754 234444333433333455555 4
Q ss_pred ecchhhhhccC--CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 289 TRSVDVCDQMD--AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 289 tR~~~v~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
|+...+..... ...+++.+++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 157 t~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 157 TEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 44444432211 237899999999999988887754432222 567788999999976544443
No 142
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.5e-05 Score=56.72 Aligned_cols=41 Identities=44% Similarity=0.519 Sum_probs=33.7
Q ss_pred cCCCEEeccCCcccccCcccccCCccceeccccccccCCccc
Q 046470 571 VSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPH 612 (888)
Q Consensus 571 ~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~ 612 (888)
++|++|++++|+|+.+|..+++|++|++|++++|++ ..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i-~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI-SDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC-SBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC-CCCcC
Confidence 479999999999999998899999999999999975 55553
No 143
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=1.6e-05 Score=74.97 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=55.8
Q ss_pred hhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhh-cccCCCEEeccCCcccccC--cccccCCccceeccc
Q 046470 526 LITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGIS-SLVSLHHLDLSWTEITGLP--QELKALEKLRYLNLE 602 (888)
Q Consensus 526 Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~i~~Lp--~~i~~L~~L~~L~l~ 602 (888)
...++|++|.+..++. |..++.|..|.|++|.|+.+-+.+. .+++|..|.|.+|+|.++- ..+..+++|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445555555544433 5555666666666666665533333 3445666666666655541 234556666666666
Q ss_pred cccccCC--ccccccCCCCCCcEEeccCCC
Q 046470 603 HAYMLSI--IPHQLISGFSKLEVLRLLGCG 630 (888)
Q Consensus 603 ~~~~l~~--lp~~~i~~L~~L~~L~l~~~~ 630 (888)
+|+.... --.-++.++++|++|++....
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhhh
Confidence 6644211 011236677888888877543
No 144
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.83 E-value=0.00015 Score=86.93 Aligned_cols=150 Identities=18% Similarity=0.283 Sum_probs=86.5
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccC--C-CCEEEE-EEecchHHHHHHHcCCC
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQH--H-FDVVIW-AAVSTLQDDIGKRIGFS 231 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--~-f~~~~w-v~~~~l~~~i~~~l~~~ 231 (888)
.++||+.+++++++.|.. ....-+.++|++|+|||++|+.++........ . .+..+| ++.+.+. ....
T Consensus 183 ~~igr~~ei~~~~~~L~~--~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~----a~~~-- 254 (731)
T TIGR02639 183 PLIGREDELERTIQVLCR--RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL----AGTK-- 254 (731)
T ss_pred cccCcHHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh----hhcc--
Confidence 579999999999999876 34445679999999999999999988621111 1 133333 2222211 1000
Q ss_pred hhhhcCCCHHHHHHHHHHHh-ccCcEEEEEccCCCcc----------chhh-hCCCCCCCCCC-cEEEEEecchh-----
Q 046470 232 ENWWKKKSPEEKAVDISSIL-SRKEFVLLLDDIWKPI----------NLKD-MGVPLQNLNAG-SKIVLTTRSVD----- 293 (888)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~-l~~~l~~~~~g-s~iivTtR~~~----- 293 (888)
.....++....+.+.+ +.++.+|++|+++... +... +...+ ..| -++|-+|...+
T Consensus 255 ----~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~~~~ 327 (731)
T TIGR02639 255 ----YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYKNHF 327 (731)
T ss_pred ----ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHHHHh
Confidence 0112223333333333 3468999999997321 1112 22222 223 34444443322
Q ss_pred -----hhhccCCceeEcCCCChHHHHHHHHHHhh
Q 046470 294 -----VCDQMDAEKVEVSCLAHDEAWKLFQKMVE 322 (888)
Q Consensus 294 -----v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 322 (888)
+.+++ ..+++++++.++..+++.....
T Consensus 328 ~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 328 EKDRALSRRF--QKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred hhhHHHHHhC--ceEEeCCCCHHHHHHHHHHHHH
Confidence 22222 2789999999999999997654
No 145
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=9.1e-05 Score=79.56 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=53.2
Q ss_pred HhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCC-cccccCcccccCCccceeccccccccCCccccccCCCCCCc
Q 046470 544 FQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWT-EITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLE 622 (888)
Q Consensus 544 ~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 622 (888)
+..+++++.|++++|.++.+|. -..+|+.|.+++| .++.+|..+ ..+|++|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccc
Confidence 4457888899999998888882 2346888999886 677788765 36889999998865566664 366
Q ss_pred EEeccC
Q 046470 623 VLRLLG 628 (888)
Q Consensus 623 ~L~l~~ 628 (888)
+|++.+
T Consensus 116 ~L~L~~ 121 (426)
T PRK15386 116 SLEIKG 121 (426)
T ss_pred eEEeCC
Confidence 666653
No 146
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=1.6e-06 Score=76.11 Aligned_cols=84 Identities=20% Similarity=0.360 Sum_probs=47.3
Q ss_pred CCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecc
Q 046470 522 TSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNL 601 (888)
Q Consensus 522 ~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 601 (888)
...+|...++++|.+..+|+.+-..++.+..|+|++|.|..+|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 33444555555555555555544455555555555555555555555555566666665555555555555555555555
Q ss_pred cccc
Q 046470 602 EHAY 605 (888)
Q Consensus 602 ~~~~ 605 (888)
.+|.
T Consensus 131 ~~na 134 (177)
T KOG4579|consen 131 PENA 134 (177)
T ss_pred CCCc
Confidence 5553
No 147
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.78 E-value=0.00034 Score=77.14 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=96.6
Q ss_pred CcccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
+++.|++..++++.+.+... -...+-|.++|++|+|||++|+++++.. ...| +.+..+.+...
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~---i~v~~~~l~~~ 204 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF---IRVVGSELVQK 204 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCE---EEeehHHHhHh
Confidence 35789999999998876321 1235678999999999999999999876 2222 12222232211
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHH-hccCcEEEEEccCCCcc------------c----hhhhCCCCC--CCCCCcE
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSI-LSRKEFVLLLDDIWKPI------------N----LKDMGVPLQ--NLNAGSK 284 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~gs~ 284 (888)
. .... ......+.+. -...+.+|+|||++... . +..+...+. ....+..
T Consensus 205 ~-----------~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 272 (389)
T PRK03992 205 F-----------IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVK 272 (389)
T ss_pred h-----------ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEE
Confidence 1 1111 1122222222 23567899999997521 0 111111111 1123556
Q ss_pred EEEEecchhhhh--cc--C-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC
Q 046470 285 IVLTTRSVDVCD--QM--D-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL 346 (888)
Q Consensus 285 iivTtR~~~v~~--~~--~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 346 (888)
||.||...+... .. + -. .+.+.+.+.++-.++|+.+........... ...+++.+.|.
T Consensus 273 VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 273 IIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred EEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 777776533211 11 1 22 789999999999999998775433222222 45666677664
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00075 Score=78.11 Aligned_cols=191 Identities=12% Similarity=0.138 Sum_probs=107.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccCCCC---EEEEEEecchHHHHHHHcCC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD---VVIWAAVSTLQDDIGKRIGF 230 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~---~~~wv~~~~l~~~i~~~l~~ 230 (888)
.+++|.+..++.+.+++.. +.+ +.+.++|+.|+||||+|+.+.+..-.. ...+ |-. | ..-..|...-..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~--~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~-~~~~~~~c~~--c--~~c~~i~~g~~~ 88 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDT--GRVAHAFLFTGARGVGKTSTARILAKALNCE-QGLTAEPCNV--C--PPCVEITEGRSV 88 (576)
T ss_pred HHccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhcCC-CCCCCCCCCc--c--HHHHHHhcCCCC
Confidence 4689999999999998876 444 567899999999999999998875111 1000 000 0 000011000000
Q ss_pred C---hhhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEE-EecchhhhhccC
Q 046470 231 S---ENWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVL-TTRSVDVCDQMD 299 (888)
Q Consensus 231 ~---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~~ 299 (888)
. -+.......++. ..+.+.+ .+++-++|+|+++... ....+...+........+|+ ||....+.....
T Consensus 89 d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 89 DVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred CeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH
Confidence 0 000011112222 2222222 2455689999997542 34444444433334555655 555455543322
Q ss_pred C--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc-cHHHHHHHH
Q 046470 300 A--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP-LALKTVGRA 356 (888)
Q Consensus 300 ~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~ 356 (888)
. ..+++.+++.++....+...+.......+ .+.+..|++.++|.. .|+..+-..
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 168 SRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 27889999999998888877654432222 577888999999865 555555443
No 149
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.0011 Score=66.26 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=102.7
Q ss_pred CcccchHHHHHHHHHHhhc---CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCC
Q 046470 155 HTVVGQELLLYRVWKCITD---QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFS 231 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~ 231 (888)
.+|+|.++.++++.=++.. ++...-.+.++|++|.||||||.-+++.. . ..+. +.-+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-g--vn~k----~tsGp------------ 86 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-G--VNLK----ITSGP------------ 86 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-c--CCeE----ecccc------------
Confidence 3589999888887666643 34567789999999999999999999987 2 2211 00000
Q ss_pred hhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc-chhhh-CCCC--------CCCCCCcE-----------EEEEec
Q 046470 232 ENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI-NLKDM-GVPL--------QNLNAGSK-----------IVLTTR 290 (888)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~l-~~~l--------~~~~~gs~-----------iivTtR 290 (888)
.-....+++..+ ..|+ +.=+|++|.+.... ..+++ ..+. ...+.++| |=-|||
T Consensus 87 ----~leK~gDlaaiL-t~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 87 ----ALEKPGDLAAIL-TNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred ----cccChhhHHHHH-hcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 000111122111 1222 33456778876431 11111 0000 11223333 235999
Q ss_pred chhhhhccCCc---eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 291 SVDVCDQMDAE---KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 291 ~~~v~~~~~~~---~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
...+..-+... +.+++..+.+|-.+...+.+..-..... ++-+.+|+++..|-|--..-
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnR 222 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANR 222 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHH
Confidence 86665444443 6789999999999999998865443333 67899999999999964433
No 150
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.73 E-value=6.6e-05 Score=80.14 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--------chHHHHHHHcCCChhhhcCCCHH--HH---
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--------TLQDDIGKRIGFSENWWKKKSPE--EK--- 243 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--------~l~~~i~~~l~~~~~~~~~~~~~--~~--- 243 (888)
.-..++|+|++|+|||||++.+++.. . ..+|+..+||.+. ++++.+...+-... ++..... .+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast--~d~p~~~~~~va~~ 242 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPASRHVQVAEM 242 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEec--CCCChHHHHHHHHH
Confidence 34679999999999999999999987 2 3489999999887 55666633221111 0111111 11
Q ss_pred -HHHHHHH-hccCcEEEEEccCCCc
Q 046470 244 -AVDISSI-LSRKEFVLLLDDIWKP 266 (888)
Q Consensus 244 -~~~l~~~-l~~k~~LlVlDdv~~~ 266 (888)
.+....+ -++++++|++|++...
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhHH
Confidence 1111111 2589999999999753
No 151
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00083 Score=77.02 Aligned_cols=190 Identities=12% Similarity=0.103 Sum_probs=108.6
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcccccc--CCCCEEEEEEecchHHHHHHHcCCC-
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ--HHFDVVIWAAVSTLQDDIGKRIGFS- 231 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~l~~~i~~~l~~~- 231 (888)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..-... ..+.|.. | ..-..|...-...
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~--C--~~C~~i~~~~~~dv 90 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE--C--SSCKSIDNDNSLDV 90 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc--c--hHHHHHHcCCCCCe
Confidence 35899999999999999762 2345688999999999999999988761110 0011100 0 0001111100000
Q ss_pred --hhhhcCCCHHHHHHHHHH----HhccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEec-chhhhhccC--C
Q 046470 232 --ENWWKKKSPEEKAVDISS----ILSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTR-SVDVCDQMD--A 300 (888)
Q Consensus 232 --~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~~--~ 300 (888)
-+.......+++.+...+ -..+++-++|+|++... ..+..+...+........+|++|. ...+..... .
T Consensus 91 ~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc 170 (563)
T PRK06647 91 IEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRC 170 (563)
T ss_pred EEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhc
Confidence 000011223333222211 12356678999999754 345555555544445566665554 344432222 2
Q ss_pred ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 301 EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 301 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
..++..+++.++....+.+.+.......+ ++.+..|++.++|.+-.+..
T Consensus 171 ~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 171 QHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 27899999999999888887754332222 67788899999998754433
No 152
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.72 E-value=0.0003 Score=75.97 Aligned_cols=140 Identities=8% Similarity=0.115 Sum_probs=81.6
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENW 234 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~ 234 (888)
.+++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++.. ...| ..+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~---~~~~---~~i~~~~--------------- 78 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEV---GAEV---LFVNGSD--------------- 78 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHh---Cccc---eEeccCc---------------
Confidence 45799999999999998762 334677779999999999999998875 2221 2222221
Q ss_pred hcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCcc---chhhhCCCCCCCCCCcEEEEEecchh-hhhccCC--cee
Q 046470 235 WKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKPI---NLKDMGVPLQNLNAGSKIVLTTRSVD-VCDQMDA--EKV 303 (888)
Q Consensus 235 ~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~--~~~ 303 (888)
...+.....+.++. .+.+-++|+||++... ....+...+.....+.++|+||.... +...... ..+
T Consensus 79 ---~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 79 ---CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred ---ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 00111111121111 2346689999997541 12222222333345778888886532 1111111 256
Q ss_pred EcCCCChHHHHHHHHH
Q 046470 304 EVSCLAHDEAWKLFQK 319 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~ 319 (888)
.+...+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777778877766654
No 153
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00097 Score=77.40 Aligned_cols=192 Identities=14% Similarity=0.119 Sum_probs=108.3
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHcCCCh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRIGFSE 232 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l~~~~ 232 (888)
..++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..- -. ..+....-.++ ...+.+........
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~-~~~~~~~~~Cg~C~~C~~i~~g~h~D~ 92 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-RIAPAYLFTGPRGTGKTSSARILAKSLN-CL-NSDKPTPEPCGKCELCRAIAAGNALDV 92 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCChHHHHHHHHHHhc-CC-CcCCCCCCCCcccHHHHHHhcCCCccE
Confidence 35799999999999988762 2236788999999999999999988861 11 11000000000 22222221111100
Q ss_pred ---hhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-EecchhhhhccC--
Q 046470 233 ---NWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSVDVCDQMD-- 299 (888)
Q Consensus 233 ---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~~-- 299 (888)
........+++.+.+ +.+ .+++-++|+|+++.. +.+..+...+........+|+ |+....+.....
T Consensus 93 ~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSR 171 (620)
T PRK14948 93 IEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISR 171 (620)
T ss_pred EEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhh
Confidence 000112222332222 222 245668999999854 334555444433333455554 444344433222
Q ss_pred CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 300 AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 300 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
...+++.+++.++....+.+.+.......+ .+.+..|++.++|.+..+..+
T Consensus 172 c~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 172 CQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 227888899999988888877765432222 467889999999987655443
No 154
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.69 E-value=1.2e-05 Score=70.70 Aligned_cols=88 Identities=28% Similarity=0.379 Sum_probs=79.4
Q ss_pred ccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEecc
Q 046470 502 EGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLS 579 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 579 (888)
.++..+++++|.+..+|. ...++.+++|++.+|.+..+|.+ +..++.||.|+++.|.+...|.-|..|.+|-+|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 367788999999998875 35677999999999999999998 899999999999999999999999999999999999
Q ss_pred CCcccccCccc
Q 046470 580 WTEITGLPQEL 590 (888)
Q Consensus 580 ~~~i~~Lp~~i 590 (888)
+|.+.++|-.+
T Consensus 132 ~na~~eid~dl 142 (177)
T KOG4579|consen 132 ENARAEIDVDL 142 (177)
T ss_pred CCccccCcHHH
Confidence 99988888764
No 155
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.69 E-value=0.00098 Score=68.46 Aligned_cols=195 Identities=17% Similarity=0.160 Sum_probs=110.2
Q ss_pred cccchH---HHHHHHHHHhhcC-CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCC----EEEEEEec------chH
Q 046470 156 TVVGQE---LLLYRVWKCITDQ-DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD----VVIWAAVS------TLQ 221 (888)
Q Consensus 156 ~~vGr~---~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~----~~~wv~~~------~l~ 221 (888)
..||-. +.++++.+.+... ..+.+-+.|+|.+|.|||++++.+.+.+. ....-+ .++.|... .+.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHHH
Confidence 455543 3345555555543 34568899999999999999999998762 211111 35555544 889
Q ss_pred HHHHHHcCCChhhhcCCCHHHHHHHHHHHhcc-CcEEEEEccCCCcc-----c---hhhhCCCCCCCCCCcEEEEEecch
Q 046470 222 DDIGKRIGFSENWWKKKSPEEKAVDISSILSR-KEFVLLLDDIWKPI-----N---LKDMGVPLQNLNAGSKIVLTTRSV 292 (888)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~-----~---~~~l~~~l~~~~~gs~iivTtR~~ 292 (888)
..|+.+++.+.. ...+...+...+...++. +--+||+|++.+.- . .-.....+.+.-.=+-|.|-|+..
T Consensus 114 ~~IL~~lgaP~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 114 SAILEALGAPYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHhCcccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 999999998753 334455555555566643 45699999997631 1 111111122222334566666653
Q ss_pred hhhhccCCc------eeEcCCCChHH-HHHHHHHHhhccc--CCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 293 DVCDQMDAE------KVEVSCLAHDE-AWKLFQKMVERST--LDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 293 ~v~~~~~~~------~~~l~~L~~~~-a~~Lf~~~~~~~~--~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
--+-..+.. ++.+.....++ ...|+......-. ....-...++++.|...++|+.--+..+
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 322221111 45555555544 3444433221111 1222334789999999999987544433
No 156
>PRK10536 hypothetical protein; Provisional
Probab=97.68 E-value=0.00029 Score=70.81 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=40.2
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEE
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIW 214 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w 214 (888)
.+.++......++.++.+ ..++.+.|++|.|||+||.++..+. -..+.|+.++-
T Consensus 56 ~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI 109 (262)
T PRK10536 56 PILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIV 109 (262)
T ss_pred cccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEE
Confidence 356788888888888865 2489999999999999999988864 11234554443
No 157
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=4.5e-05 Score=71.95 Aligned_cols=101 Identities=29% Similarity=0.361 Sum_probs=56.1
Q ss_pred cceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc--ChhhhcccCCCEEeccC
Q 046470 503 GAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL--PSGISSLVSLHHLDLSW 580 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l--p~~i~~L~~L~~L~L~~ 580 (888)
....+++++|++..++.++.+++|.+|.+.+|.++.+.+..-.-+++|..|.|.+|.|.++ -..+..|+.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3445556666665555566666666666666666665555444455566666666655544 12344555666666666
Q ss_pred CcccccCc----ccccCCccceecccc
Q 046470 581 TEITGLPQ----ELKALEKLRYLNLEH 603 (888)
Q Consensus 581 ~~i~~Lp~----~i~~L~~L~~L~l~~ 603 (888)
|.++..+. -+..+++|++||..+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 65554322 245566666666544
No 158
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.66 E-value=0.00031 Score=77.50 Aligned_cols=170 Identities=17% Similarity=0.199 Sum_probs=96.4
Q ss_pred cccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 156 TVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
++.|.+..++++.+.+.-. -...+-+.++|++|+|||++|+++++.. ...| +.+..+.+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~seL~~k- 256 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSELIQK- 256 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecchhhhh-
Confidence 4689999988888776310 1234568899999999999999999976 3333 22233333221
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc----------------chhhhCCCCC--CCCCCcEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI----------------NLKDMGVPLQ--NLNAGSKIV 286 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~gs~ii 286 (888)
. .......+...+.....+.+.+|+||+++... .+..+...+. ....+.+||
T Consensus 257 ---~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI 326 (438)
T PTZ00361 257 ---Y-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVI 326 (438)
T ss_pred ---h-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEE
Confidence 1 11111222222333334678899999986320 0111111111 112356778
Q ss_pred EEecchhhhhc--c--C-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC
Q 046470 287 LTTRSVDVCDQ--M--D-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL 346 (888)
Q Consensus 287 vTtR~~~v~~~--~--~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 346 (888)
.||...+.... . + .+ .+++...+.++..++|..++.......... ...++..+.|.
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~ 388 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDEL 388 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCC
Confidence 77775443221 1 1 22 789999999999999998775443222222 34455555554
No 159
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=3.6e-05 Score=89.97 Aligned_cols=129 Identities=23% Similarity=0.283 Sum_probs=88.0
Q ss_pred ccceEEEEecCCCcc--CC--CCCCCCchhhhhhccCCcccc-cchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEE
Q 046470 502 EGAKRISLRGNRFDS--LS--EIPTSPRLITLLLIANSIDEI-TDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHL 576 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~--l~--~~~~~~~Lr~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 576 (888)
.++++|++++...-. .+ -...+|.|++|.+.+-.+... ....+.++++|+.||+|+++++.+ .++++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 478889888754321 11 125678899998887664322 233456889999999999999988 689999999999
Q ss_pred eccCCcccccC--cccccCCccceeccccccccCCccc------cccCCCCCCcEEeccCCCCC
Q 046470 577 DLSWTEITGLP--QELKALEKLRYLNLEHAYMLSIIPH------QLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 577 ~L~~~~i~~Lp--~~i~~L~~L~~L~l~~~~~l~~lp~------~~i~~L~~L~~L~l~~~~~~ 632 (888)
.+++=.+..-. ..+-+|++|++||+|...... .+. +.-..|++|+.|+.+++...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 88876665422 356788999999998764422 221 00134788888888765543
No 160
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.00088 Score=77.13 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=104.1
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHcCCCh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRIGFSE 232 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l~~~~ 232 (888)
.+++|.+..++.+.+++... .-.+.+.++|+.|+||||+|+.+.+.... ...-+.. .+. ..-..|.......-
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c-~~~~~~~---pC~~C~~C~~i~~g~~~dv 90 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNC-LNPPDGE---PCNECEICKAITNGSLMDV 90 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCCC---CCCccHHHHHHhcCCCCCe
Confidence 46899999999999998763 23456778999999999999999876511 1100000 000 00111111000000
Q ss_pred ---hhhcCCCHHHHHHHHHHH-----hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-EecchhhhhccC--
Q 046470 233 ---NWWKKKSPEEKAVDISSI-----LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSVDVCDQMD-- 299 (888)
Q Consensus 233 ---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~~-- 299 (888)
+.......++.. .+.+. ..++.-++|+|+++.. ..+..+...+.....+..+|+ ||....+.....
T Consensus 91 ~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR 169 (559)
T PRK05563 91 IEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR 169 (559)
T ss_pred EEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH
Confidence 000111222222 22222 2355678899999754 334444444433333445454 544444432222
Q ss_pred CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 300 AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 300 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
...++..+++.++....+...+.......+ .+.+..|++.++|.+..+
T Consensus 170 c~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 170 CQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred heEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 227889999999999988887754432222 567788899998877543
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.63 E-value=0.00028 Score=85.56 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=95.1
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCC---CCEEEEE-EecchHHHHHHHcCCC
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHH---FDVVIWA-AVSTLQDDIGKRIGFS 231 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv-~~~~l~~~i~~~l~~~ 231 (888)
.++||+++++++++.|... ...-+.++|++|+|||++|+.++......... -+..+|. +.+.+. ....
T Consensus 180 ~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~----ag~~-- 251 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL----AGTK-- 251 (821)
T ss_pred CCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh----ccCC--
Confidence 4799999999999999773 34456799999999999999998876211111 1233442 222111 1111
Q ss_pred hhhhcCCCHHHHHHHHHHHh-ccCcEEEEEccCCCcc---------chhhhCCCCCCCCCCcEEEEEecchhhhh-----
Q 046470 232 ENWWKKKSPEEKAVDISSIL-SRKEFVLLLDDIWKPI---------NLKDMGVPLQNLNAGSKIVLTTRSVDVCD----- 296 (888)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~v~~----- 296 (888)
+. ...++....+.+.+ +.++.+|++|++.... +...+..+.... ..-++|.+|...+...
T Consensus 252 ---~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~ie~D 326 (821)
T CHL00095 252 ---YR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKHIEKD 326 (821)
T ss_pred ---Cc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHHHhcC
Confidence 01 12223333333332 3568999999996321 122222121111 2245555555544311
Q ss_pred -ccC--CceeEcCCCChHHHHHHHHHHhhcc--cCCCCCChHHHHHHHHHHhCC
Q 046470 297 -QMD--AEKVEVSCLAHDEAWKLFQKMVERS--TLDSHASIPELAKTLARECGG 345 (888)
Q Consensus 297 -~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g 345 (888)
.+. ...+.+...+.++...++....... ..... --++....+++.++|
T Consensus 327 ~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~-i~deal~~i~~ls~~ 379 (821)
T CHL00095 327 PALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLS-ISDKALEAAAKLSDQ 379 (821)
T ss_pred HHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhc
Confidence 111 1267888999999988887543211 00010 124556666666654
No 162
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.63 E-value=0.0026 Score=76.80 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=39.0
Q ss_pred CcccchHHHHHHHHHHhhc----CCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITD----QDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|.+..++.|.+++.. .....+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999887753 12234589999999999999999999886
No 163
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.61 E-value=0.00078 Score=70.03 Aligned_cols=160 Identities=13% Similarity=0.158 Sum_probs=97.5
Q ss_pred CCcccchHHHHHHHHHHhhcCCCCc-eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec------chHHHHHH
Q 046470 154 DHTVVGQELLLYRVWKCITDQDKNR-GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS------TLQDDIGK 226 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~------~l~~~i~~ 226 (888)
.+.+.+|+.++..+...+...+... ..|.|+|..|.|||.+.+++.+.. ..+ .+|+++- .++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~~---~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NLE---NVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CCc---ceeeehHHhccHHHHHHHHHH
Confidence 4678999999999999887754434 455899999999999999999886 222 4688765 67778888
Q ss_pred HcCCChh-hhcCCC----HHHHHHHHHH--Hh--ccCcEEEEEccCCCccchhhhCCC----CC--CCCCCcEEEEEecc
Q 046470 227 RIGFSEN-WWKKKS----PEEKAVDISS--IL--SRKEFVLLLDDIWKPINLKDMGVP----LQ--NLNAGSKIVLTTRS 291 (888)
Q Consensus 227 ~l~~~~~-~~~~~~----~~~~~~~l~~--~l--~~k~~LlVlDdv~~~~~~~~l~~~----l~--~~~~gs~iivTtR~ 291 (888)
+.+..+. ...... ....+..+.+ .. +++.++||||+++...+.+.+.-+ +. -..+.. +|+++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecc
Confidence 7752221 111011 1111122222 11 146899999999865543332100 00 112223 3333322
Q ss_pred --hh-hhhccCCc---eeEcCCCChHHHHHHHHHH
Q 046470 292 --VD-VCDQMDAE---KVEVSCLAHDEAWKLFQKM 320 (888)
Q Consensus 292 --~~-v~~~~~~~---~~~l~~L~~~~a~~Lf~~~ 320 (888)
+. ....+|.. ++.....+.+|...++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22 23335655 6678889999999988764
No 164
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.00067 Score=74.75 Aligned_cols=135 Identities=21% Similarity=0.210 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCH
Q 046470 161 ELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSP 240 (888)
Q Consensus 161 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~ 240 (888)
..-..++.+.+.. . ..++.|.|+-++||||+++.+.... ... .+++..-++... ....
T Consensus 23 ~~~~~~l~~~~~~--~-~~i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~-------------~~~l 80 (398)
T COG1373 23 RKLLPRLIKKLDL--R-PFIILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLD-------------RIEL 80 (398)
T ss_pred HhhhHHHHhhccc--C-CcEEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcc-------------hhhH
Confidence 3444455555433 1 2299999999999999997776665 122 444433311100 0011
Q ss_pred HHHHHHHHHHhccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhh-----hhccCCc--eeEcCCCChHHH
Q 046470 241 EEKAVDISSILSRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDV-----CDQMDAE--KVEVSCLAHDEA 313 (888)
Q Consensus 241 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-----~~~~~~~--~~~l~~L~~~~a 313 (888)
.+......+.-..++..++||.|....+|......+.+.++. +|++|+-+... +...... .+++.|||..|-
T Consensus 81 ~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Ef 159 (398)
T COG1373 81 LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREF 159 (398)
T ss_pred HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHH
Confidence 111111222222277899999999999999887777776666 89998887554 3333333 889999999998
Q ss_pred HHHHH
Q 046470 314 WKLFQ 318 (888)
Q Consensus 314 ~~Lf~ 318 (888)
..+-.
T Consensus 160 l~~~~ 164 (398)
T COG1373 160 LKLKG 164 (398)
T ss_pred Hhhcc
Confidence 77543
No 165
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=5.4e-05 Score=88.46 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=27.1
Q ss_pred CCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc--ChhhhcccCCCEEeccCC
Q 046470 522 TSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL--PSGISSLVSLHHLDLSWT 581 (888)
Q Consensus 522 ~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l--p~~i~~L~~L~~L~L~~~ 581 (888)
++|+|+.||+++.+++.+. -++.+++|++|.+.+-.+..- -..+.+|++|+.||+|..
T Consensus 171 sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNLS--GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccCccceeecCCCCccCcH--HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 4455555555555544441 144555555555554444421 123444555555555544
No 166
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.001 Score=71.02 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=90.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCC-------hhhhcCCCHHHHHHHH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFS-------ENWWKKKSPEEKAVDI 247 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~-------~~~~~~~~~~~~~~~l 247 (888)
.-.+.+.++|+.|+||||+|+.++...--. ...+.. .|.. ..-+.+.. ...+ .........+++.+ +
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~-~~~~~~--~Cg~C~sC~~~~~-g~HPD~~~i~~~~~~~~i~id~iR~-l 94 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCE-APQGGG--ACGSCKGCQLLRA-GSHPDNFVLEPEEADKTIKVDQVRE-L 94 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCC-CCCCCC--CCCCCHHHHHHhc-CCCCCEEEEeccCCCCCCCHHHHHH-H
Confidence 345678899999999999999988876211 100000 0000 00011110 0000 00001122333333 3
Q ss_pred HHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecch-hhhhccCC--ceeEcCCCChHHHHHHH
Q 046470 248 SSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSV-DVCDQMDA--EKVEVSCLAHDEAWKLF 317 (888)
Q Consensus 248 ~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~--~~~~l~~L~~~~a~~Lf 317 (888)
.+.+ .+++-++|+|+++.. +....+...+.....++.+|+||.+. .+..-... ..+.+.+++.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 3332 244556678999864 33444444443334567777777664 34333222 38899999999999998
Q ss_pred HHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 318 QKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
.+..... ..+.+..++..++|.|..+..+
T Consensus 175 ~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 175 QQALPES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhcccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 8764211 1455678899999999765544
No 167
>PRK08116 hypothetical protein; Validated
Probab=97.57 E-value=0.00017 Score=74.96 Aligned_cols=101 Identities=24% Similarity=0.249 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEE
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVL 258 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 258 (888)
..+.++|..|+|||.||.++++... .....++++++++++..+...+.... ..+..+ +.+.+.+-. ||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~~~~ll~~i~~~~~~~~----~~~~~~----~~~~l~~~d-lL 182 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVNFPQLLNRIKSTYKSSG----KEDENE----IIRSLVNAD-LL 182 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHHHHHHHhccc----cccHHH----HHHHhcCCC-EE
Confidence 4588999999999999999999972 22355788888888877766653211 112222 334444333 89
Q ss_pred EEccCCC--ccchhh--hCCCCCC-CCCCcEEEEEecc
Q 046470 259 LLDDIWK--PINLKD--MGVPLQN-LNAGSKIVLTTRS 291 (888)
Q Consensus 259 VlDdv~~--~~~~~~--l~~~l~~-~~~gs~iivTtR~ 291 (888)
||||+.. ..+|.. +...+.. -..|..+||||..
T Consensus 183 viDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 183 ILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 9999943 233422 2111111 1245668888874
No 168
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.57 E-value=0.00094 Score=73.24 Aligned_cols=172 Identities=15% Similarity=0.212 Sum_probs=96.6
Q ss_pred CcccchHHHHHHHHHHhhc----C-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITD----Q-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
.++.|.+..++++.+.+.- . -...+-+.++|++|.|||++|+++++.. ...| +.+..+.+...
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~s~l~~k 218 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVGSEFVQK 218 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehHHHHHH
Confidence 3578999888888776631 0 1235678899999999999999999876 2333 22222222111
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc------------c----hhhhCCCCC--CCCCCcEE
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI------------N----LKDMGVPLQ--NLNAGSKI 285 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~gs~i 285 (888)
. . ......+...+.......+.+|++|+++... . +..+...+. ....+..|
T Consensus 219 ~---~--------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~V 287 (398)
T PTZ00454 219 Y---L--------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKV 287 (398)
T ss_pred h---c--------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 1 1 1112222223333345678999999986420 0 111111111 12235667
Q ss_pred EEEecchhhhh--cc---CCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 286 VLTTRSVDVCD--QM---DAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 286 ivTtR~~~v~~--~~---~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
|+||...+... .. .-+ .+.+...+.++-.++|.............+ ..++++.+.|.-
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 77777543321 11 122 688888889988888887765433222222 455666666653
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.55 E-value=0.00034 Score=80.47 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHhhcCC---CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQD---KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+++|.+..++++..++.... ...+++.++|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999987531 234679999999999999999998765
No 170
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.55 E-value=0.0015 Score=71.26 Aligned_cols=105 Identities=17% Similarity=0.111 Sum_probs=66.0
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHcCCChh
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRIGFSEN 233 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l~~~~~ 233 (888)
.+++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||.++ --..+++........
T Consensus 176 d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~v 250 (459)
T PRK11331 176 DLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGV 250 (459)
T ss_pred cccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCCCC
Confidence 468889999999998865 3468889999999999999999887 344578888999887 122222222211110
Q ss_pred hhcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCc
Q 046470 234 WWKKKSPEEKAVDISSILS--RKEFVLLLDDIWKP 266 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~ 266 (888)
.+...+ .-....+....+ +++++||+|++...
T Consensus 251 gy~~~~-G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 GFRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CeEecC-chHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 011000 011112222222 46899999999754
No 171
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=0.00012 Score=78.61 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=57.6
Q ss_pred cccccceEEEEecCCCccCCCCCCCCchhhhhhccCC-cccccchHHhcCCcccEEEcCCC-CCcccChhhhcccCCCEE
Q 046470 499 EEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANS-IDEITDGFFQSMSSLRVLSLGSN-ALSKLPSGISSLVSLHHL 576 (888)
Q Consensus 499 ~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L 576 (888)
..+.++++|+++++.+..+|.++ ++|++|.+++|. ++.+|.. + .++|++|++++| .+..+|.+ |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceE
Confidence 34567889999999888887543 468999998755 6555543 3 358999999998 77777754 6666
Q ss_pred eccCCc---ccccCcccc
Q 046470 577 DLSWTE---ITGLPQELK 591 (888)
Q Consensus 577 ~L~~~~---i~~Lp~~i~ 591 (888)
+++++. +..+|.++.
T Consensus 118 ~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLT 135 (426)
T ss_pred EeCCCCCcccccCcchHh
Confidence 676654 555776544
No 172
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.54 E-value=0.0016 Score=77.82 Aligned_cols=159 Identities=19% Similarity=0.209 Sum_probs=85.3
Q ss_pred CCcccchHHHHHHHHHHhhcC----CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcC
Q 046470 154 DHTVVGQELLLYRVWKCITDQ----DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIG 229 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~ 229 (888)
+...+|.+..+++|+++|... .....++.++|++|+||||+|+.++... ...|-.+-+-.+.+. ..|. +
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~i~~~~~~d~-~~i~---g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALGGVRDE-AEIR---G 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEcCCCCCH-HHhc---c
Confidence 345799999999999988631 1345689999999999999999999876 333322221111111 1111 1
Q ss_pred CChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc------hhhhCCCCCC---------------CCCCcEEEEE
Q 046470 230 FSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN------LKDMGVPLQN---------------LNAGSKIVLT 288 (888)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~---------------~~~gs~iivT 288 (888)
.. ..+.+.....+.+.+...- ...-+++||+++.... ...+...+.. .-.+.-+|.|
T Consensus 394 ~~-~~~~g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~T 471 (784)
T PRK10787 394 HR-RTYIGSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVAT 471 (784)
T ss_pred ch-hccCCCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEc
Confidence 00 0011112223333333322 2344789999974311 1111111110 1122333445
Q ss_pred ecchhhhhccCCc--eeEcCCCChHHHHHHHHHHh
Q 046470 289 TRSVDVCDQMDAE--KVEVSCLAHDEAWKLFQKMV 321 (888)
Q Consensus 289 tR~~~v~~~~~~~--~~~l~~L~~~~a~~Lf~~~~ 321 (888)
+.+..+....-.. .+++.+++.+|-.++.+++.
T Consensus 472 aN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 472 SNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5444332222222 78999999999988887765
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00067 Score=80.27 Aligned_cols=153 Identities=16% Similarity=0.259 Sum_probs=87.1
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCC---CCEEEEEEecchHHHHHHHcCCCh
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHH---FDVVIWAAVSTLQDDIGKRIGFSE 232 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~l~~~i~~~l~~~~ 232 (888)
.++||+.+++++++.|... ...-+.++|++|+|||++|+.++......... .++.+|.. ++ ..+.. +..
T Consensus 187 ~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l--~~-~~lla--G~~- 258 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL--DI-GSLLA--GTK- 258 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec--cH-HHHhc--ccc-
Confidence 4799999999999999773 33445689999999999999998875221111 23444431 11 11111 000
Q ss_pred hhhcCCCHHHHHHHHHHHh-ccCcEEEEEccCCCc----------cchhhhCCCCCCCCCCcEEEEEecchhh-------
Q 046470 233 NWWKKKSPEEKAVDISSIL-SRKEFVLLLDDIWKP----------INLKDMGVPLQNLNAGSKIVLTTRSVDV------- 294 (888)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~iivTtR~~~v------- 294 (888)
...+.+.....+.+.+ +.++.+|++|++... .+...+..++... ..-+||-+|...+.
T Consensus 259 ---~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~~~D 334 (758)
T PRK11034 259 ---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKD 334 (758)
T ss_pred ---hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHhhcc
Confidence 0112223333333333 356789999999742 1122222222221 22344444443332
Q ss_pred ---hhccCCceeEcCCCChHHHHHHHHHHhh
Q 046470 295 ---CDQMDAEKVEVSCLAHDEAWKLFQKMVE 322 (888)
Q Consensus 295 ---~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 322 (888)
.++. ..+.+.+.+.++..+++.....
T Consensus 335 ~AL~rRF--q~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 335 RALARRF--QKIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred HHHHhhC--cEEEeCCCCHHHHHHHHHHHHH
Confidence 2222 2789999999999999987653
No 174
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.53 E-value=0.0011 Score=80.89 Aligned_cols=152 Identities=14% Similarity=0.220 Sum_probs=85.8
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCC----CCEEEE-EEecchHHHHHHHcCC
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHH----FDVVIW-AAVSTLQDDIGKRIGF 230 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~w-v~~~~l~~~i~~~l~~ 230 (888)
.++||+.+++++++.|.. ....-+.++|++|+|||++|..+..... .... .+..+| +.++.+.. ...
T Consensus 174 ~~igr~~ei~~~~~~l~r--~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~~p~~l~~~~~~~l~~~~l~a----~~~- 245 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSR--RTKNNPVLIGEPGVGKTAIVEGLAQRIV-NGDVPESLKNKRLLALDMGALIA----GAK- 245 (852)
T ss_pred cCCCcHHHHHHHHHHHhc--CCCCceEEEcCCCCCHHHHHHHHHHHHh-ccCCchhhcCCeEEEeeHHHHhh----cch-
Confidence 479999999999999977 3344566899999999999999988762 1111 122222 32222110 000
Q ss_pred ChhhhcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCcc---------chhhhCCCCCCCCCC-cEEEEEecchhhhh--
Q 046470 231 SENWWKKKSPEEKAVDISSILS--RKEFVLLLDDIWKPI---------NLKDMGVPLQNLNAG-SKIVLTTRSVDVCD-- 296 (888)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~iivTtR~~~v~~-- 296 (888)
+. ...+.....+.+.+. +++.+|++|++.... +...+..+.. ..| -++|-+|...+.-.
T Consensus 246 ----~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~ 318 (852)
T TIGR03346 246 ----YR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYI 318 (852)
T ss_pred ----hh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHh
Confidence 01 122223333333332 468999999997431 1222222222 223 34444444433311
Q ss_pred ------ccCCceeEcCCCChHHHHHHHHHHhh
Q 046470 297 ------QMDAEKVEVSCLAHDEAWKLFQKMVE 322 (888)
Q Consensus 297 ------~~~~~~~~l~~L~~~~a~~Lf~~~~~ 322 (888)
.-.-..+.+...+.++...++.....
T Consensus 319 ~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 319 EKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred hcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 01112678999999999999886644
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.52 E-value=0.0012 Score=80.22 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=84.8
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCC----CC-EEEEEEecchHHHHHHHcCC
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHH----FD-VVIWAAVSTLQDDIGKRIGF 230 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~-~~~wv~~~~l~~~i~~~l~~ 230 (888)
.++||+.+++++++.|.. ....-+.++|++|+|||++|+.+..... .... .+ .++.+.++.+.. ...
T Consensus 179 ~vigr~~ei~~~i~iL~r--~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~vp~~l~~~~~~~l~l~~l~a----g~~- 250 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPEGLKGRRVLALDMGALVA----GAK- 250 (857)
T ss_pred cCCCCHHHHHHHHHHHhc--CCcCceEEECCCCCCHHHHHHHHHHHhh-cCCCchhhCCCEEEEEehhhhhh----ccc-
Confidence 479999999999999977 3445566999999999999999998862 1110 12 233333332221 000
Q ss_pred ChhhhcCCCHHHHHHHHHHHh--ccCcEEEEEccCCCcc---------chhhhCCCCCCCCCCcEEEEEecchhh-----
Q 046470 231 SENWWKKKSPEEKAVDISSIL--SRKEFVLLLDDIWKPI---------NLKDMGVPLQNLNAGSKIVLTTRSVDV----- 294 (888)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~v----- 294 (888)
+. ...++....+.+.+ .+++.+|++|++.... +...+..+.... ..-++|-||...+.
T Consensus 251 ----~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~e~r~~~~ 324 (857)
T PRK10865 251 ----YR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDEYRQYIE 324 (857)
T ss_pred ----hh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCHHHHHHhh
Confidence 01 12222233232222 2568999999997532 122222222211 23345544444332
Q ss_pred ---hhccCCceeEcCCCChHHHHHHHHHHh
Q 046470 295 ---CDQMDAEKVEVSCLAHDEAWKLFQKMV 321 (888)
Q Consensus 295 ---~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 321 (888)
+-.-.-..+.+..-+.++...+++...
T Consensus 325 ~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 325 KDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 111111256677678899999887654
No 176
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.0042 Score=66.54 Aligned_cols=188 Identities=14% Similarity=0.146 Sum_probs=109.8
Q ss_pred CCcccchHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec------chHHHHH
Q 046470 154 DHTVVGQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS------TLQDDIG 225 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~------~l~~~i~ 225 (888)
+..++||+.+++.+.+|+... ....+.+-|.|.+|.|||.+...++.+.......| +++++... .++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~-~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSP-VTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccc-eeEEEeeccccchHHHHHHHH
Confidence 346899999999999998652 35567899999999999999999999873322333 33454433 5555555
Q ss_pred HHcCCChhhhcCCCHHHHHHHHHHHhccC--cEEEEEccCCCcc--chhhhCCCC-CCCCCCcEEEEEec-c-----hhh
Q 046470 226 KRIGFSENWWKKKSPEEKAVDISSILSRK--EFVLLLDDIWKPI--NLKDMGVPL-QNLNAGSKIVLTTR-S-----VDV 294 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~--~~~~l~~~l-~~~~~gs~iivTtR-~-----~~v 294 (888)
..+-... .......+....+.++..+. .+|+|+|.++... .-..+...| .+.-.++++|+--- + +..
T Consensus 228 ~~~~q~~--~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 228 SSLLQDL--VSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHh--cCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 5441000 01122255566666666544 5899999987431 111111111 12234565554222 1 111
Q ss_pred hhcc----CC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC
Q 046470 295 CDQM----DA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL 346 (888)
Q Consensus 295 ~~~~----~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 346 (888)
.... +. ..+...|.+.++-.++|.++..... ..+......+-+++||.|.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAP 361 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccC
Confidence 1111 11 2778899999999999999986543 1222233444455555443
No 177
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.0052 Score=60.89 Aligned_cols=173 Identities=17% Similarity=0.242 Sum_probs=101.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-----chHHHHHHHcCCChhhhcCCCHH----HHHHH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-----TLQDDIGKRIGFSENWWKKKSPE----EKAVD 246 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-----~l~~~i~~~l~~~~~~~~~~~~~----~~~~~ 246 (888)
++.+++.++|.-|.|||.++++..... . +.-.+++.+... .+...|...+... ...... +....
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~----p~~~~~~~~e~~~~~ 121 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N--EDQVAVVVIDKPTLSDATLLEAIVADLESQ----PKVNVNAVLEQIDRE 121 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C--CCceEEEEecCcchhHHHHHHHHHHHhccC----ccchhHHHHHHHHHH
Confidence 456799999999999999999665554 1 111222333222 6677777777652 222333 23333
Q ss_pred HHHHh-ccCc-EEEEEccCCCc--cchhhhCCC--C-CCCCCCcEEEEEec----c---hhhhhccCCc--e-eEcCCCC
Q 046470 247 ISSIL-SRKE-FVLLLDDIWKP--INLKDMGVP--L-QNLNAGSKIVLTTR----S---VDVCDQMDAE--K-VEVSCLA 309 (888)
Q Consensus 247 l~~~l-~~k~-~LlVlDdv~~~--~~~~~l~~~--l-~~~~~gs~iivTtR----~---~~v~~~~~~~--~-~~l~~L~ 309 (888)
+.+.. +++| ..+++||.... ..++.++-. + .+...--+|+..-. . ..+.+..+.. . |++.|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 33333 5677 99999998753 233333211 1 11111122332211 1 1122222322 3 8999999
Q ss_pred hHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHH
Q 046470 310 HDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGR 355 (888)
Q Consensus 310 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 355 (888)
.++...++..+........+---.+....|.....|.|.+|..++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999888876653222222356678899999999999988864
No 178
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.46 E-value=0.004 Score=62.00 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=60.5
Q ss_pred CcccchHHHHHHHHHHhhc--CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCCh
Q 046470 155 HTVVGQELLLYRVWKCITD--QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSE 232 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~ 232 (888)
+.++|.|..++.+++--.. .+....-+.+||..|.|||++++++.+... .++ .+ -|.+. .
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~-~~G---LR-lIev~-------------k 88 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA-DQG---LR-LIEVS-------------K 88 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh-hcC---ce-EEEEC-------------H
Confidence 4689999999888765432 123455677899999999999999998872 222 11 11111 0
Q ss_pred hhhcCCCHHHHHHHHHHHhccCcEEEEEccCCC---ccchhhhCCCC
Q 046470 233 NWWKKKSPEEKAVDISSILSRKEFVLLLDDIWK---PINLKDMGVPL 276 (888)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~l~~~l 276 (888)
. .-.+...+...+++ ...||+|++||+.= +.....++..+
T Consensus 89 ~--~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~L 131 (249)
T PF05673_consen 89 E--DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVL 131 (249)
T ss_pred H--HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHh
Confidence 0 12233344444432 34699999999852 23344444433
No 179
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.42 E-value=0.00042 Score=63.79 Aligned_cols=68 Identities=26% Similarity=0.217 Sum_probs=41.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccC-cEEEE
Q 046470 181 IGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRK-EFVLL 259 (888)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlV 259 (888)
|.|+|++|+||||+|+.+++.. .. ..+.++.+.+... ........+...+.+.-+.. +.+|+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~---~~~~i~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~vl~ 63 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GF---PFIEIDGSELISS-----------YAGDSEQKIRDFFKKAKKSAKPCVLF 63 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TS---EEEEEETTHHHTS-----------STTHHHHHHHHHHHHHHHTSTSEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cc---ccccccccccccc-----------cccccccccccccccccccccceeee
Confidence 5799999999999999999987 21 2355555432211 01112223333333333333 89999
Q ss_pred EccCCC
Q 046470 260 LDDIWK 265 (888)
Q Consensus 260 lDdv~~ 265 (888)
+||++.
T Consensus 64 iDe~d~ 69 (132)
T PF00004_consen 64 IDEIDK 69 (132)
T ss_dssp EETGGG
T ss_pred eccchh
Confidence 999974
No 180
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0034 Score=66.72 Aligned_cols=188 Identities=13% Similarity=0.166 Sum_probs=107.4
Q ss_pred cccchHHHHHHHHHHhhcCCCC-ceEEEEEcCCCCcHHHHHHHHHhccccc-------------cCCCCEEEEEEec---
Q 046470 156 TVVGQELLLYRVWKCITDQDKN-RGIIGLYGIGGVGKTTLLTQVNNNFCHE-------------QHHFDVVIWAAVS--- 218 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~-------------~~~f~~~~wv~~~--- 218 (888)
.++|.+..++.+...+.. ++ .+...++|+.|+||+++|..+.+..--. ..|-| ..|+.-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~--~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~ 81 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQ--NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQH 81 (314)
T ss_pred HhCCHHHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccc
Confidence 579999999999999877 44 4789999999999999999887765111 11222 2333211
Q ss_pred ---chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEE
Q 046470 219 ---TLQDDIGKRIGFSENWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLT 288 (888)
Q Consensus 219 ---~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivT 288 (888)
.+-...+...+........-..++ +..+.+.+ .+++-++|+|+++... ....+...+....+..-|++|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~ 160 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIA 160 (314)
T ss_pred cccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 011111111111000000111222 23344444 3566799999997542 333343333222233334445
Q ss_pred ecchhhhhccCCc--eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 289 TRSVDVCDQMDAE--KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 289 tR~~~v~~~~~~~--~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
+....+..-.... .+++.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 4444444433333 899999999999999998743211 1122468899999999766543
No 181
>PRK12377 putative replication protein; Provisional
Probab=97.39 E-value=0.00059 Score=69.46 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEE
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFV 257 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 257 (888)
...+.++|.+|+|||+||.++.+... .....++++++.++...+...... ...... +.+.+ .+--|
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~~l~~~l~~~~~~------~~~~~~----~l~~l-~~~dL 166 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVPDVMSRLHESYDN------GQSGEK----FLQEL-CKVDL 166 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHHHHHHHHHHHHhc------cchHHH----HHHHh-cCCCE
Confidence 46789999999999999999999872 333446888888777777655421 111122 22222 35669
Q ss_pred EEEccCCC
Q 046470 258 LLLDDIWK 265 (888)
Q Consensus 258 lVlDdv~~ 265 (888)
|||||+..
T Consensus 167 LiIDDlg~ 174 (248)
T PRK12377 167 LVLDEIGI 174 (248)
T ss_pred EEEcCCCC
Confidence 99999943
No 182
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0044 Score=67.03 Aligned_cols=144 Identities=19% Similarity=0.220 Sum_probs=92.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHh----
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSIL---- 251 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l---- 251 (888)
.....+.+.|++|+|||+||..++.. ..|..+--++. +.....++......+.+.+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSp---------------e~miG~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISP---------------EDMIGLSESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeCh---------------HHccCccHHHHHHHHHHHHHHhh
Confidence 34567788999999999999999765 35654433221 1123344444555555444
Q ss_pred ccCcEEEEEccCCCccchhhhCCCCC-------------CCCCCcEE--EEEecchhhhhccCCc-----eeEcCCCCh-
Q 046470 252 SRKEFVLLLDDIWKPINLKDMGVPLQ-------------NLNAGSKI--VLTTRSVDVCDQMDAE-----KVEVSCLAH- 310 (888)
Q Consensus 252 ~~k~~LlVlDdv~~~~~~~~l~~~l~-------------~~~~gs~i--ivTtR~~~v~~~~~~~-----~~~l~~L~~- 310 (888)
+..--.||+||+....+|..++..+. ....|-|. +-||....|.+.|+-. .|.+..++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 45667999999988777776654321 12234454 4488888898888753 789999988
Q ss_pred HHHHHHHHHHhhcccCCCCCChHHHHHHHHHHh
Q 046470 311 DEAWKLFQKMVERSTLDSHASIPELAKTLAREC 343 (888)
Q Consensus 311 ~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 343 (888)
++..+.+.+.-- -.+...+.++.+...+|
T Consensus 676 ~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 676 EQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 778887776531 12233456666666666
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0075 Score=70.11 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=71.4
Q ss_pred CcccchHHHHHHHHHHhhc-------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchH--HHHH
Q 046470 155 HTVVGQELLLYRVWKCITD-------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQ--DDIG 225 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~--~~i~ 225 (888)
..++|.+..++.+.+.+.. ......+....|+.|||||.||++++... -+.=+..+-++.|+.. ..+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHHH
Confidence 4589999999999988853 22345678889999999999999998876 2222456666777332 2233
Q ss_pred HHcCCChhhhcCCCHHHHHHHHHHHhccCcE-EEEEccCCCc--cchhhhCCCC
Q 046470 226 KRIGFSENWWKKKSPEEKAVDISSILSRKEF-VLLLDDIWKP--INLKDMGVPL 276 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~l~~~l 276 (888)
+-+|.+.. +-+-+. --.+-+..+.++| +|.||++... +.+.-+...|
T Consensus 568 rLIGaPPG-YVGyee---GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 568 RLIGAPPG-YVGYEE---GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred HHhCCCCC-Cceecc---ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 44443321 111111 1134556677887 8999999853 3344443333
No 184
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.35 E-value=0.0019 Score=72.51 Aligned_cols=159 Identities=14% Similarity=0.185 Sum_probs=87.1
Q ss_pred cccchHHHHHHHHHHhhc-----------CCCCceEEEEEcCCCCcHHHHHHHHHhcccccc---CCCCEEEEEEec--c
Q 046470 156 TVVGQELLLYRVWKCITD-----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ---HHFDVVIWAAVS--T 219 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~--~ 219 (888)
.+.|.+..++++.+.+.- +-...+-+.++|++|.|||++|+++++... .. ..+....++.+. +
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccchh
Confidence 467899999888887632 012345688999999999999999999872 11 012233444443 2
Q ss_pred hHHHHHHHcCCChhhhcCCCHHHHHHHHHHHh-ccCcEEEEEccCCCc---------cc-----hhhhCCCCCC--CCCC
Q 046470 220 LQDDIGKRIGFSENWWKKKSPEEKAVDISSIL-SRKEFVLLLDDIWKP---------IN-----LKDMGVPLQN--LNAG 282 (888)
Q Consensus 220 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------~~-----~~~l~~~l~~--~~~g 282 (888)
+.... .+. .......+....++.. .+++.+|++|+++.. .+ +..+...+.. ...+
T Consensus 262 Ll~ky---vGe-----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 262 LLNKY---VGE-----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred hcccc---cch-----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 21110 000 0001111222222221 347899999999742 11 1122222221 1123
Q ss_pred cEEEEEecchhhhh----c-cCCc-eeEcCCCChHHHHHHHHHHhhc
Q 046470 283 SKIVLTTRSVDVCD----Q-MDAE-KVEVSCLAHDEAWKLFQKMVER 323 (888)
Q Consensus 283 s~iivTtR~~~v~~----~-~~~~-~~~l~~L~~~~a~~Lf~~~~~~ 323 (888)
..||.||-..+... + ..-+ .+++...+.++..++|.++...
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 44555555433311 1 1223 6899999999999999988743
No 185
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.35 E-value=0.003 Score=72.43 Aligned_cols=176 Identities=16% Similarity=0.143 Sum_probs=95.3
Q ss_pred CcccchHHHHHHHHHHhh---cC-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHH
Q 046470 155 HTVVGQELLLYRVWKCIT---DQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQD 222 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~ 222 (888)
.+++|.+..++++.+.+. .. ....+-+.++|++|+|||++|+.+++.. ...| +.++ ++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~~~~~~ 126 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISGSDFVE 126 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccHHHHHH
Confidence 357888876665554442 21 1234568899999999999999998875 2222 2222 2221
Q ss_pred HHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc------------ch----hhhCCCCC--CCCCCcE
Q 046470 223 DIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI------------NL----KDMGVPLQ--NLNAGSK 284 (888)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~~----~~l~~~l~--~~~~gs~ 284 (888)
.. .......+...+.......+.+|++||++... .+ ..+...+. ....+-.
T Consensus 127 ~~-----------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 127 MF-----------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred HH-----------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE
Confidence 10 11122333334444445677999999996421 01 11111111 1123444
Q ss_pred EEEEecchhh-----hhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC-ccHHHHH
Q 046470 285 IVLTTRSVDV-----CDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL-PLALKTV 353 (888)
Q Consensus 285 iivTtR~~~v-----~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 353 (888)
||.||...+. .+...-+ .+.+...+.++-.++|........... ......+++.+.|. +-.|..+
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCCHHHHHHH
Confidence 5556654332 1111223 788888888888888888765432111 22345788888774 3333333
No 186
>CHL00176 ftsH cell division protein; Validated
Probab=97.32 E-value=0.0022 Score=74.53 Aligned_cols=170 Identities=16% Similarity=0.162 Sum_probs=95.1
Q ss_pred CcccchHHHHHHHHHH---hhcCC-------CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKC---ITDQD-------KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~---L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.+++|.++.++++.+. +.... ...+-|.++|++|+|||++|++++... ...| +.++.+++....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~---i~is~s~f~~~~ 256 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPF---FSISGSEFVEMF 256 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe---eeccHHHHHHHh
Confidence 3578887766555444 33311 224568999999999999999998865 2222 112222322111
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc----------------chhhhCCCCCC--CCCCcEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI----------------NLKDMGVPLQN--LNAGSKIV 286 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~--~~~gs~ii 286 (888)
.......+...+.......+.+|++||++... .+..+...+.. ...+-.||
T Consensus 257 -----------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVI 325 (638)
T CHL00176 257 -----------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVI 325 (638)
T ss_pred -----------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEE
Confidence 11122233334455556788999999996421 12222222211 22355566
Q ss_pred EEecchhhhh----ccC-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCC
Q 046470 287 LTTRSVDVCD----QMD-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGG 345 (888)
Q Consensus 287 vTtR~~~v~~----~~~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 345 (888)
.||...+... ..+ -+ .+.+...+.++-.++++.++..... ........+++.+.|
T Consensus 326 aaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 326 AATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPG 386 (638)
T ss_pred EecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCC
Confidence 6666543321 111 22 7788888999999999888754221 113345677888777
No 187
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=1.9e-05 Score=77.76 Aligned_cols=101 Identities=26% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCc--ccccCCccceec
Q 046470 523 SPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQ--ELKALEKLRYLN 600 (888)
Q Consensus 523 ~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~--~i~~L~~L~~L~ 600 (888)
+.+.+.|++.+|.++.+. ...+|+.|.+|.||-|.|+.+. .+..|++|+.|+|+.|.|..+-+ -+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 445677888888877664 3678999999999999999884 67889999999999998887633 477888999999
Q ss_pred cccccccCCccc----cccCCCCCCcEEec
Q 046470 601 LEHAYMLSIIPH----QLISGFSKLEVLRL 626 (888)
Q Consensus 601 l~~~~~l~~lp~----~~i~~L~~L~~L~l 626 (888)
|..|.....-+. .++.-|++|+.|+-
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccC
Confidence 988866554443 22455777777754
No 188
>PRK08181 transposase; Validated
Probab=97.25 E-value=0.00053 Score=70.76 Aligned_cols=72 Identities=21% Similarity=0.200 Sum_probs=47.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEE
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVL 258 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 258 (888)
.-+.++|++|+|||.||.++.+... .....++++.+.++...+..... ..+..... +.+ .+.-||
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~~~L~~~l~~a~~-------~~~~~~~l----~~l-~~~dLL 171 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRTTDLVQKLQVARR-------ELQLESAI----AKL-DKFDLL 171 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeHHHHHHHHHHHHh-------CCcHHHHH----HHH-hcCCEE
Confidence 4589999999999999999998762 23345677777777777654321 12222222 222 234599
Q ss_pred EEccCCC
Q 046470 259 LLDDIWK 265 (888)
Q Consensus 259 VlDdv~~ 265 (888)
||||+..
T Consensus 172 IIDDlg~ 178 (269)
T PRK08181 172 ILDDLAY 178 (269)
T ss_pred EEecccc
Confidence 9999964
No 189
>PRK08118 topology modulation protein; Reviewed
Probab=97.25 E-value=0.00054 Score=65.72 Aligned_cols=36 Identities=39% Similarity=0.661 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEE
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIW 214 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w 214 (888)
+.|.|+|++|+||||+|+.+++......-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987322356777765
No 190
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.24 E-value=0.0016 Score=60.57 Aligned_cols=85 Identities=21% Similarity=0.184 Sum_probs=47.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHH---cCCChhhhcCCCHHHHHHHHHHHhccC-
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKR---IGFSENWWKKKSPEEKAVDISSILSRK- 254 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~---l~~~~~~~~~~~~~~~~~~l~~~l~~k- 254 (888)
..+.|+|++|+||||+|+.++... ......++.+..+......... ...... ............+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLLLIIVGGK-KASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHHhhhhhcc-CCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999887 2222345555555111111000 000000 01222333333444444444
Q ss_pred cEEEEEccCCCcc
Q 046470 255 EFVLLLDDIWKPI 267 (888)
Q Consensus 255 ~~LlVlDdv~~~~ 267 (888)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999998754
No 191
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.21 E-value=0.0083 Score=67.51 Aligned_cols=194 Identities=14% Similarity=0.140 Sum_probs=114.4
Q ss_pred CcccchHHHHHHHHHHhhc---CCCCceEEEEEcCCCCcHHHHHHHHHhcccc-----ccCCCCEEEEEEec------ch
Q 046470 155 HTVVGQELLLYRVWKCITD---QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCH-----EQHHFDVVIWAAVS------TL 220 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-----~~~~f~~~~wv~~~------~l 220 (888)
..+-+||.+..+|-.++.. .+...+.+-|.|.+|.|||..+..|.+.... .-..|+.+ .|..- ++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yv-eINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYV-EINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEE-EEcceeecCHHHH
Confidence 4567999999999988864 2234459999999999999999999996621 12234322 22221 67
Q ss_pred HHHHHHHcCCChhhhcCCCHHHHHHHHHHHhc-----cCcEEEEEccCCCccc--hhhhCCCCC-CCCCCcEEEEEec-c
Q 046470 221 QDDIGKRIGFSENWWKKKSPEEKAVDISSILS-----RKEFVLLLDDIWKPIN--LKDMGVPLQ-NLNAGSKIVLTTR-S 291 (888)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~iivTtR-~ 291 (888)
...|..++... ........+.+..++. .+..++++|+++..-. -+-+...|. ...++||++|-+= +
T Consensus 475 Y~~I~~~lsg~-----~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGE-----RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccC-----cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 77777777543 2233334444555543 4578999999864311 111111221 2456787765332 2
Q ss_pred ----------hhhhhccCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 292 ----------VDVCDQMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 292 ----------~~v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
..|++++|-..+...|.+.++-.++...+......-.....+=+++.|+.-.|..-.|+.+.-
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 234566676688888888888888877766443211112233345555554555444444443
No 192
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.14 E-value=0.0011 Score=70.06 Aligned_cols=118 Identities=19% Similarity=0.147 Sum_probs=71.8
Q ss_pred chHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhc
Q 046470 159 GQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWK 236 (888)
Q Consensus 159 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~ 236 (888)
++....+...+++..- +...+-+.++|..|+|||.||.++++... ..-..+.+++++.+...+....+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~---~~g~~v~~~~~~~l~~~lk~~~~~------ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA---KKGVSSTLLHFPEFIRELKNSISD------ 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEEHHHHHHHHHHHHhc------
Confidence 5555566666666531 12456799999999999999999999982 222346788888777777665531
Q ss_pred CCCHHHHHHHHHHHhccCcEEEEEccCCCc--cchhh--hCCCC-CCC-CCCcEEEEEecc
Q 046470 237 KKSPEEKAVDISSILSRKEFVLLLDDIWKP--INLKD--MGVPL-QNL-NAGSKIVLTTRS 291 (888)
Q Consensus 237 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~iivTtR~ 291 (888)
.+..+.. +.+ .+-=||||||+... .+|.. +...+ ... ..+-.+|+||--
T Consensus 206 -~~~~~~l----~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -GSVKEKI----DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -CcHHHHH----HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1222222 222 24568999999643 34542 32222 111 234557777763
No 193
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00026 Score=70.06 Aligned_cols=82 Identities=27% Similarity=0.401 Sum_probs=39.2
Q ss_pred CcccEEEcCCCCCcccChhhhcccCCCEEeccCC--cccc-cCcccccCCccceeccccccc--cCCccccccCCCCCCc
Q 046470 548 SSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWT--EITG-LPQELKALEKLRYLNLEHAYM--LSIIPHQLISGFSKLE 622 (888)
Q Consensus 548 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~--~i~~-Lp~~i~~L~~L~~L~l~~~~~--l~~lp~~~i~~L~~L~ 622 (888)
..|..|++.++.++.+- .+-.|++|++|.++.| ++.. ++....++++|++|++++|++ ++.+++ +..+.+|.
T Consensus 43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 33444444444333221 2224555666666555 3332 444444446666666666543 122332 44555566
Q ss_pred EEeccCCCCC
Q 046470 623 VLRLLGCGSN 632 (888)
Q Consensus 623 ~L~l~~~~~~ 632 (888)
.|+++.|...
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 6666666544
No 194
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0088 Score=63.37 Aligned_cols=174 Identities=11% Similarity=0.026 Sum_probs=94.9
Q ss_pred HHHHHHHHhhcCCCC-ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCC---------Ch
Q 046470 163 LLYRVWKCITDQDKN-RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGF---------SE 232 (888)
Q Consensus 163 ~~~~l~~~L~~~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~---------~~ 232 (888)
..+.+...+.. ++ ...+.++|+.|+||+++|..+.+..-- .....+- .+-+ ......-.. +.
T Consensus 12 ~~~~l~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~--~c~~---c~~~~~g~HPD~~~i~~~p~ 83 (319)
T PRK08769 12 AYDQTVAALDA--GRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAA--AQRT---RQLIAAGTHPDLQLVSFIPN 83 (319)
T ss_pred HHHHHHHHHHc--CCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCC--cchH---HHHHhcCCCCCEEEEecCCC
Confidence 44555555554 34 457889999999999999998876511 1101100 0000 000111000 00
Q ss_pred hhh----cCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecc-hhhhhccCC
Q 046470 233 NWW----KKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMDA 300 (888)
Q Consensus 233 ~~~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~ 300 (888)
... ..-..+++. .+.+.+ .+++-++|+|+++... .-..+...+..-..++.+|++|.+ ..+..-...
T Consensus 84 ~~~~k~~~~I~idqIR-~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 84 RTGDKLRTEIVIEQVR-EISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred cccccccccccHHHHH-HHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 000 001122222 233333 2456799999998642 233333334333456666666654 444433333
Q ss_pred c--eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 301 E--KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 301 ~--~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
. .+.+.+++.+++.+.+.+. + .+ +..+..++..++|.|+.+..+.
T Consensus 163 RCq~i~~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 163 RCQRLEFKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hheEeeCCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 3 7899999999999888754 1 11 3446788999999998765544
No 195
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.0019 Score=65.59 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=57.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHH
Q 046470 163 LLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEE 242 (888)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~ 242 (888)
.+..+.++...-......+.++|.+|+|||+||.++++... ..-..+++++++++...+...+.. ...+...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it~~~l~~~l~~~~~~-----~~~~~~~ 155 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIITVADIMSAMKDTFSN-----SETSEEQ 155 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEHHHHHHHHHHHHhh-----ccccHHH
Confidence 44455555443223345789999999999999999999872 233466778877777766655421 1112222
Q ss_pred HHHHHHHHhccCcEEEEEccCCCc
Q 046470 243 KAVDISSILSRKEFVLLLDDIWKP 266 (888)
Q Consensus 243 ~~~~l~~~l~~k~~LlVlDdv~~~ 266 (888)
+.+.+. +.=+|||||+...
T Consensus 156 ----~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 156 ----LLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred ----HHHHhc-cCCEEEEeCCCCC
Confidence 333344 3458889999643
No 196
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.13 E-value=0.031 Score=60.33 Aligned_cols=192 Identities=14% Similarity=0.179 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHH-HHHHhccccccCCCCEEEEEEec---------chHHHHHHHcC
Q 046470 160 QELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLL-TQVNNNFCHEQHHFDVVIWAAVS---------TLQDDIGKRIG 229 (888)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~---------~l~~~i~~~l~ 229 (888)
|.+..++|..||.+ ..-..|.|.||-|.||+.|+ ..+..+. +.+..+++. .+...++.++|
T Consensus 1 R~e~~~~L~~wL~e--~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvG 71 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE--NPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVG 71 (431)
T ss_pred CchHHHHHHHHHhc--CCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcC
Confidence 55678999999988 55679999999999999999 6665543 115566554 44555566655
Q ss_pred CCh-----------------------hhhcCCCHHHHHHHHHH---Hhc--------------------------cCcEE
Q 046470 230 FSE-----------------------NWWKKKSPEEKAVDISS---ILS--------------------------RKEFV 257 (888)
Q Consensus 230 ~~~-----------------------~~~~~~~~~~~~~~l~~---~l~--------------------------~k~~L 257 (888)
.-. ..+......++...+.. .|+ .++=+
T Consensus 72 Y~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PV 151 (431)
T PF10443_consen 72 YFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPV 151 (431)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCE
Confidence 321 01122222333222211 111 12568
Q ss_pred EEEccCCCc-----------cchhhhCCCCCCCCCCcEEEEEecchhh----hhccCCc---eeEcCCCChHHHHHHHHH
Q 046470 258 LLLDDIWKP-----------INLKDMGVPLQNLNAGSKIVLTTRSVDV----CDQMDAE---KVEVSCLAHDEAWKLFQK 319 (888)
Q Consensus 258 lVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v----~~~~~~~---~~~l~~L~~~~a~~Lf~~ 319 (888)
||+|+.-.. .+|... +.. .+-..||++|-+... ...+... .+.|...+.+.|.++...
T Consensus 152 VVIdnF~~k~~~~~~iy~~laeWAa~---Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 152 VVIDNFLHKAEENDFIYDKLAEWAAS---LVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred EEEcchhccCcccchHHHHHHHHHHH---HHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 999998543 234432 222 345678888877443 3445444 789999999999999999
Q ss_pred HhhcccCC------------CC-----CChHHHHHHHHHHhCCCccHHHHHHHHhccCCChh
Q 046470 320 MVERSTLD------------SH-----ASIPELAKTLARECGGLPLALKTVGRAMKSRSNIG 364 (888)
Q Consensus 320 ~~~~~~~~------------~~-----~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~ 364 (888)
+....... .+ ..........++..||=-.-+..+++.++...+++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 88653110 00 12345567788899999999999999998865543
No 197
>PRK07261 topology modulation protein; Provisional
Probab=97.11 E-value=0.001 Score=64.13 Aligned_cols=67 Identities=22% Similarity=0.518 Sum_probs=44.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEE
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLL 259 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlV 259 (888)
.|.|+|++|+||||||+.+........-+.|...|-. .+...+.++....+.+.+.+.+ .|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~--wI 62 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-----------------NWQERDDDDMIADISNFLLKHD--WI 62 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-----------------ccccCCHHHHHHHHHHHHhCCC--EE
Confidence 4899999999999999999876511122344444421 1234455667777788887766 67
Q ss_pred EccCCC
Q 046470 260 LDDIWK 265 (888)
Q Consensus 260 lDdv~~ 265 (888)
+|+...
T Consensus 63 idg~~~ 68 (171)
T PRK07261 63 IDGNYS 68 (171)
T ss_pred EcCcch
Confidence 888743
No 198
>PRK06526 transposase; Provisional
Probab=97.11 E-value=0.00033 Score=71.94 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEE
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFV 257 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 257 (888)
..-+.++|++|+|||+||..+..... ...+ .+.|++.+++...+..... ..... ..+.. + .+.-+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~--~~g~-~v~f~t~~~l~~~l~~~~~-------~~~~~---~~l~~-l-~~~dl 162 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC--QAGH-RVLFATAAQWVARLAAAHH-------AGRLQ---AELVK-L-GRYPL 162 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH--HCCC-chhhhhHHHHHHHHHHHHh-------cCcHH---HHHHH-h-ccCCE
Confidence 34689999999999999999988762 2222 3456666666666543321 11111 22222 2 23468
Q ss_pred EEEccCCC
Q 046470 258 LLLDDIWK 265 (888)
Q Consensus 258 lVlDdv~~ 265 (888)
||+||+..
T Consensus 163 LIIDD~g~ 170 (254)
T PRK06526 163 LIVDEVGY 170 (254)
T ss_pred EEEccccc
Confidence 99999964
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.008 Score=64.76 Aligned_cols=160 Identities=12% Similarity=0.074 Sum_probs=86.1
Q ss_pred cccc-hHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCCh-
Q 046470 156 TVVG-QELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSE- 232 (888)
Q Consensus 156 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~- 232 (888)
.++| .+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+.+...- ....+.. .|.. ..-+.+.. ...++
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~--~cg~C~~c~~~~~-~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE--PCGTCTNCKRIDS-GNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC--CCCcCHHHHHHhc-CCCCCE
Confidence 3567 777778887777652 23456799999999999999998776511 1100000 0000 00000000 00000
Q ss_pred ----hhhcCCCHHHHHHHHHHH----hccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecc-hhhhhccCCc
Q 046470 233 ----NWWKKKSPEEKAVDISSI----LSRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMDAE 301 (888)
Q Consensus 233 ----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~~ 301 (888)
........+++...+... ..+.+-++|+|+++... ....+...+.....++.+|++|.+ ..+..-....
T Consensus 81 ~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR 160 (329)
T PRK08058 81 HLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR 160 (329)
T ss_pred EEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh
Confidence 000112233333222211 23456689999997542 344444445444567777777765 3333323323
Q ss_pred --eeEcCCCChHHHHHHHHHH
Q 046470 302 --KVEVSCLAHDEAWKLFQKM 320 (888)
Q Consensus 302 --~~~l~~L~~~~a~~Lf~~~ 320 (888)
.+++.+++.++..+.+.+.
T Consensus 161 c~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 161 CQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceeeeCCCCCHHHHHHHHHHc
Confidence 8899999999998888653
No 200
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.09 E-value=8.7e-05 Score=85.57 Aligned_cols=110 Identities=25% Similarity=0.215 Sum_probs=54.3
Q ss_pred CCCchhhhhhccCC-ccccc-chHHhcCCcccEEEcCCC--CCccc----ChhhhcccCCCEEeccCCc-ccc--cCccc
Q 046470 522 TSPRLITLLLIANS-IDEIT-DGFFQSMSSLRVLSLGSN--ALSKL----PSGISSLVSLHHLDLSWTE-ITG--LPQEL 590 (888)
Q Consensus 522 ~~~~Lr~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~~--~i~~l----p~~i~~L~~L~~L~L~~~~-i~~--Lp~~i 590 (888)
.++.|+.|.+.++. +.... ......+++|+.|+++++ .+... +.....+.+|+.|+++++. ++. +..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36777777777664 33211 233566777777777763 11111 1223345666666666664 443 11112
Q ss_pred ccCCccceeccccccccCCc-cccccCCCCCCcEEeccCCCC
Q 046470 591 KALEKLRYLNLEHAYMLSII-PHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 591 ~~L~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~ 631 (888)
..+++|++|.+.+|..++.. -..+..++++|++|++.+|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 22556666665555421111 011133455566666665544
No 201
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.0092 Score=63.66 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEE
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVL 258 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 258 (888)
..+.++|..|+|||.||.++++... ..-..++++++.++...+...-. . ...+... . .+.+. .-=||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~~~l~~~l~~~~~-~----~~~~~~~---~-~~~l~-~~DLL 250 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTADELIEILREIRF-N----NDKELEE---V-YDLLI-NCDLL 250 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEHHHHHHHHHHHHh-c----cchhHHH---H-HHHhc-cCCEE
Confidence 6799999999999999999999872 22336778888877766654211 0 0111111 1 22232 23489
Q ss_pred EEccCCCc--cchh--hhCCCCCC-CCCCcEEEEEecc
Q 046470 259 LLDDIWKP--INLK--DMGVPLQN-LNAGSKIVLTTRS 291 (888)
Q Consensus 259 VlDdv~~~--~~~~--~l~~~l~~-~~~gs~iivTtR~ 291 (888)
||||+... .+|. .+...+.. -..+-.+||||.-
T Consensus 251 IIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 251 IIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 99999543 2221 22111111 1224558888874
No 202
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00027 Score=69.86 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=40.0
Q ss_pred ccceEEEEecCCCccCCCCCCCCchhhhhhccCC--cccccchHHhcCCcccEEEcCCCCCccc--ChhhhcccCCCEEe
Q 046470 502 EGAKRISLRGNRFDSLSEIPTSPRLITLLLIANS--IDEITDGFFQSMSSLRVLSLGSNALSKL--PSGISSLVSLHHLD 577 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~~~i~~l--p~~i~~L~~L~~L~ 577 (888)
..+..+++.+..++.+..++.+++|+.|.++.|. +..-..-....+++|++|++++|+|..+ -..+..+.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 4555555655566666666666666666666662 2211111133445555555555554421 11233444444444
Q ss_pred ccCCcc
Q 046470 578 LSWTEI 583 (888)
Q Consensus 578 L~~~~i 583 (888)
+.+|..
T Consensus 123 l~n~~~ 128 (260)
T KOG2739|consen 123 LFNCSV 128 (260)
T ss_pred cccCCc
Confidence 444433
No 203
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.04 E-value=0.00024 Score=70.01 Aligned_cols=88 Identities=24% Similarity=0.255 Sum_probs=61.6
Q ss_pred hcCCcccEEEcCCCCCc-----ccChhhhcccCCCEEeccCCccc----ccCc-------ccccCCccceeccccccccC
Q 046470 545 QSMSSLRVLSLGSNALS-----KLPSGISSLVSLHHLDLSWTEIT----GLPQ-------ELKALEKLRYLNLEHAYMLS 608 (888)
Q Consensus 545 ~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~i~----~Lp~-------~i~~L~~L~~L~l~~~~~l~ 608 (888)
..+..+..++||+|.|. .+...|.+-.+|+..+++.-... ++|+ .+-++++|+..+|+.|-+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34677888888888776 23445566677888877753211 1333 45678899999999988766
Q ss_pred Cccc---cccCCCCCCcEEeccCCCCC
Q 046470 609 IIPH---QLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 609 ~lp~---~~i~~L~~L~~L~l~~~~~~ 632 (888)
..|+ .+|++-+.|.+|.+++|+.-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 6664 34678899999999988764
No 204
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.02 E-value=0.0011 Score=63.94 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=62.1
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENW 234 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~ 234 (888)
.++||-++.++.+.-.-.+ ++.+-+.|.||+|+||||-+..+++... ...+ -+.++ .+..+
T Consensus 27 ~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LL--G~~~-----------ke~vL-ELNAS--- 87 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELL--GDSY-----------KEAVL-ELNAS--- 87 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHh--Chhh-----------hhHhh-hccCc---
Confidence 3589999999888766666 7788899999999999999998888761 1111 01111 12222
Q ss_pred hcCCCHHHHHHHHHHHhccC-------cEEEEEccCCCc
Q 046470 235 WKKKSPEEKAVDISSILSRK-------EFVLLLDDIWKP 266 (888)
Q Consensus 235 ~~~~~~~~~~~~l~~~l~~k-------~~LlVlDdv~~~ 266 (888)
++...+-...+|+.+-+.| .-.+|||..++.
T Consensus 88 -deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 88 -DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred -cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 3455566666666665543 457999999875
No 205
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.98 E-value=0.0008 Score=65.89 Aligned_cols=122 Identities=17% Similarity=0.214 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHH---------------
Q 046470 160 QELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDD--------------- 223 (888)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~--------------- 223 (888)
+..+-...++.|.. ..++.+.|++|.|||.||.+..-+. -..+.++.++++.-. ..-++
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 34455556666653 5689999999999999999988776 345888888887543 11111
Q ss_pred ---HHHHcCCChhhhcCCCHHHHHHH------HHHHhccC---cEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEe
Q 046470 224 ---IGKRIGFSENWWKKKSPEEKAVD------ISSILSRK---EFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTT 289 (888)
Q Consensus 224 ---i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt 289 (888)
+...+..- ......+.+.+. -..+++|+ ..++|+|++.+. .++..+. ...+.|||||++-
T Consensus 80 ~~p~~d~l~~~---~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il---TR~g~~skii~~G 153 (205)
T PF02562_consen 80 LRPIYDALEEL---FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL---TRIGEGSKIIITG 153 (205)
T ss_dssp THHHHHHHTTT---S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH---TTB-TT-EEEEEE
T ss_pred HHHHHHHHHHH---hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH---cccCCCcEEEEec
Confidence 11111100 011111111110 01133443 469999999864 4566553 3346799999986
Q ss_pred cch
Q 046470 290 RSV 292 (888)
Q Consensus 290 R~~ 292 (888)
-..
T Consensus 154 D~~ 156 (205)
T PF02562_consen 154 DPS 156 (205)
T ss_dssp ---
T ss_pred Cce
Confidence 543
No 206
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.97 E-value=0.0017 Score=65.09 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
-.++|+|..|.||||++..+.... ...|..+++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEecC
Confidence 368899999999999999999877 6788888777543
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.96 E-value=0.0027 Score=76.79 Aligned_cols=105 Identities=22% Similarity=0.254 Sum_probs=60.9
Q ss_pred CcccchHHHHHHHHHHhhc-------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHH--HHH
Q 046470 155 HTVVGQELLLYRVWKCITD-------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQD--DIG 225 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~--~i~ 225 (888)
..++|.+..++.+.+.+.. ++....++.++|+.|+|||.+|+.+.... -+.....+-++++.... .+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l---~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL---YGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH---hCCCcceEEEeHHHhhhhhhhc
Confidence 4689999999999988843 12334578999999999999999988775 12222334444443221 122
Q ss_pred HHcCCChhhhcCCCHHHHHHHHHHHhc-cCcEEEEEccCCCc
Q 046470 226 KRIGFSENWWKKKSPEEKAVDISSILS-RKEFVLLLDDIWKP 266 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~ 266 (888)
.-+|.+.. +.+.+... .+.+.++ ...-+|+||++...
T Consensus 643 ~l~g~~~g-yvg~~~~g---~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 643 RLKGSPPG-YVGYGEGG---VLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred cccCCCCC-cccccccc---hHHHHHHhCCCcEEEEechhhc
Confidence 22222211 11111111 1223333 44569999999753
No 208
>PRK09183 transposase/IS protein; Provisional
Probab=96.95 E-value=0.001 Score=68.87 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=44.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEE
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFV 257 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 257 (888)
...+.|+|++|+|||+||..+..... . .-..+.++...++...+..... ... ....+.+.+ .+.-+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~--~-~G~~v~~~~~~~l~~~l~~a~~-------~~~---~~~~~~~~~-~~~dl 167 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV--R-AGIKVRFTTAADLLLQLSTAQR-------QGR---YKTTLQRGV-MAPRL 167 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH--H-cCCeEEEEeHHHHHHHHHHHHH-------CCc---HHHHHHHHh-cCCCE
Confidence 34677999999999999999987651 1 2224455665555555433221 111 112222222 34569
Q ss_pred EEEccCCC
Q 046470 258 LLLDDIWK 265 (888)
Q Consensus 258 lVlDdv~~ 265 (888)
+|+||+..
T Consensus 168 LiiDdlg~ 175 (259)
T PRK09183 168 LIIDEIGY 175 (259)
T ss_pred EEEccccc
Confidence 99999964
No 209
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.95 E-value=0.0033 Score=59.17 Aligned_cols=131 Identities=20% Similarity=0.241 Sum_probs=77.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEe---c---------------------------chHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAV---S---------------------------TLQDDIGK 226 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~---------------------------~l~~~i~~ 226 (888)
.-..+.++|+.|.||||+.+.+|..... -...+|+.- + .+.+.++-
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p----t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP----TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC----CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 4468999999999999999999988621 122334321 1 22222222
Q ss_pred Hc---------------------CCChh----hhcCCCHHHHHHHHHHHhccCcEEEEEccCC----CccchhhhCCCCC
Q 046470 227 RI---------------------GFSEN----WWKKKSPEEKAVDISSILSRKEFVLLLDDIW----KPINLKDMGVPLQ 277 (888)
Q Consensus 227 ~l---------------------~~~~~----~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~----~~~~~~~l~~~l~ 277 (888)
.+ ++... ..+-+..++....|...+-+++-+|+=|.-. ....|+-+...-.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 22 22111 0122334555556777778889999999643 2334443321112
Q ss_pred CCCCCcEEEEEecchhhhhccCCc--eeEcCCCChH
Q 046470 278 NLNAGSKIVLTTRSVDVCDQMDAE--KVEVSCLAHD 311 (888)
Q Consensus 278 ~~~~gs~iivTtR~~~v~~~~~~~--~~~l~~L~~~ 311 (888)
-+..|..||++|-+.++...+... .++-+.|..+
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 245699999999999998877766 3344444443
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0031 Score=64.88 Aligned_cols=75 Identities=24% Similarity=0.269 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcE
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEF 256 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 256 (888)
...-+.++|.+|+|||.||.++.+... ..--.+.+++++++..++....... .... .+.+.+ .+-=
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~~~el~~~Lk~~~~~~------~~~~----~l~~~l-~~~d 169 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFITAPDLLSKLKAAFDEG------RLEE----KLLREL-KKVD 169 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHHHHHHHhcC------chHH----HHHHHh-hcCC
Confidence 455689999999999999999999982 3334678888888888887766421 1111 222222 2344
Q ss_pred EEEEccCCC
Q 046470 257 VLLLDDIWK 265 (888)
Q Consensus 257 LlVlDdv~~ 265 (888)
||||||+-.
T Consensus 170 lLIiDDlG~ 178 (254)
T COG1484 170 LLIIDDIGY 178 (254)
T ss_pred EEEEecccC
Confidence 899999954
No 211
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.013 Score=64.72 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=62.4
Q ss_pred cccchHHHHHHHHHHhhc---C-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHH
Q 046470 156 TVVGQELLLYRVWKCITD---Q-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIG 225 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~ 225 (888)
++=|.+..+.++.+++.. . -...+-|.++|++|.|||.||+++++.. .-.| +.++ .-.|.
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~is--Apeiv 260 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSIS--APEIV 260 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeec--chhhh
Confidence 456889888888887743 1 1235678899999999999999999987 2233 2222 00111
Q ss_pred HHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCC
Q 046470 226 KRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWK 265 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 265 (888)
.. ..+.+++.+.+.+.+.-..-++++++|+++-
T Consensus 261 SG-------vSGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 261 SG-------VSGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred cc-------cCcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 11 1344556666666666778899999999974
No 212
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.88 E-value=0.016 Score=57.18 Aligned_cols=170 Identities=16% Similarity=0.269 Sum_probs=97.1
Q ss_pred CcccchHHHHHH---HHHHhhcC----CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHH
Q 046470 155 HTVVGQELLLYR---VWKCITDQ----DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKR 227 (888)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~ 227 (888)
+++||.+..+.+ |++.|.+. +-..+-|..+|++|.|||-+|+++++.. +-.| +-|...+ -|.+.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~---l~vkat~---liGeh 191 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL---LLVKATE---LIGEH 191 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce---EEechHH---HHHHH
Confidence 457999877644 66777653 3467889999999999999999999987 3333 2222222 22222
Q ss_pred cCCChhhhcCCCHHHHHHHHHHHh-ccCcEEEEEccCCCc----------cchhh----hCCCCC--CCCCCcEEEEEec
Q 046470 228 IGFSENWWKKKSPEEKAVDISSIL-SRKEFVLLLDDIWKP----------INLKD----MGVPLQ--NLNAGSKIVLTTR 290 (888)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~----l~~~l~--~~~~gs~iivTtR 290 (888)
.| +....+..+.+.- +.-++.+++|.++-. .+..+ +...+. ..+.|-..|-.|-
T Consensus 192 VG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 192 VG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred hh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 22 2233344444433 346899999998632 11111 211221 1233555555565
Q ss_pred chhhhhc-cCCc---eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC
Q 046470 291 SVDVCDQ-MDAE---KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL 346 (888)
Q Consensus 291 ~~~v~~~-~~~~---~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 346 (888)
+.+.... .... .++..--+++|-.+++...+..-..+. ..-.+.++++.+|.
T Consensus 263 ~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv----~~~~~~~~~~t~g~ 318 (368)
T COG1223 263 RPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV----DADLRYLAAKTKGM 318 (368)
T ss_pred ChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc----ccCHHHHHHHhCCC
Confidence 5544321 1221 566666678888888888876433222 22356677777765
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.88 E-value=0.0029 Score=62.25 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhh-cCCCHHHHHHHHHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWW-KKKSPEEKAVDISS 249 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 249 (888)
+++|.++|+.|+||||.+.+++... ..+ -..+..++.. +-++..++.++.+-... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999999988887 222 4456666665 45666788887653211 22244444443333
Q ss_pred HhccC-cEEEEEccCC
Q 046470 250 ILSRK-EFVLLLDDIW 264 (888)
Q Consensus 250 ~l~~k-~~LlVlDdv~ 264 (888)
.++.+ .=++++|=.-
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 33433 3578888663
No 214
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0083 Score=67.83 Aligned_cols=158 Identities=22% Similarity=0.279 Sum_probs=88.4
Q ss_pred CcccchHHHHHHHHHHhhcC----CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCC
Q 046470 155 HTVVGQELLLYRVWKCITDQ----DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGF 230 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~ 230 (888)
.+-+|.++.+++|+++|.-. .-.-++++.||++|||||.|++.+++.. .+.|-.. +++.+.+. ++--|.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR~---sLGGvrDE-AEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVRI---SLGGVRDE-AEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEEE---ecCccccH-HHhccc
Confidence 34589999999999999642 2345799999999999999999999987 4555222 22211110 000000
Q ss_pred ChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc---------chhhhCCC-----CCC-----CCCCcEEE-EEec
Q 046470 231 SENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI---------NLKDMGVP-----LQN-----LNAGSKIV-LTTR 290 (888)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~l~~~-----l~~-----~~~gs~ii-vTtR 290 (888)
...+-+.-+..+++.+++ .+.+.=+++||.++... .+-++..| |.+ .-.=|+|+ |||-
T Consensus 396 -RRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 396 -RRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred -cccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 001122223333333333 24456789999997431 11111111 111 11134555 4555
Q ss_pred c-hh-hh-hccCCc-eeEcCCCChHHHHHHHHHHh
Q 046470 291 S-VD-VC-DQMDAE-KVEVSCLAHDEAWKLFQKMV 321 (888)
Q Consensus 291 ~-~~-v~-~~~~~~-~~~l~~L~~~~a~~Lf~~~~ 321 (888)
| -+ +. ..++-. ++++.+.+++|-.+.-+++.
T Consensus 474 Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 474 NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 22 32 222323 89999999999888877765
No 215
>PRK06921 hypothetical protein; Provisional
Probab=96.82 E-value=0.0019 Score=67.04 Aligned_cols=71 Identities=25% Similarity=0.314 Sum_probs=45.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcE
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEF 256 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 256 (888)
....+.++|..|+|||+||.++++... ......++++...+++..+...+ .... ...+.+ .+-=
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~~~l~~~l~~~~------------~~~~-~~~~~~-~~~d 179 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPFVEGFGDLKDDF------------DLLE-AKLNRM-KKVE 179 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEHHHHHHHHHHHH------------HHHH-HHHHHh-cCCC
Confidence 356799999999999999999999872 22134567777766555554322 0111 112223 2356
Q ss_pred EEEEccC
Q 046470 257 VLLLDDI 263 (888)
Q Consensus 257 LlVlDdv 263 (888)
||||||+
T Consensus 180 lLiIDDl 186 (266)
T PRK06921 180 VLFIDDL 186 (266)
T ss_pred EEEEecc
Confidence 9999999
No 216
>PHA00729 NTP-binding motif containing protein
Probab=96.81 E-value=0.005 Score=61.06 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=26.9
Q ss_pred HHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 167 VWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+++.+.. .+...|.|+|.+|+||||||..+.+..
T Consensus 8 ~~~~l~~--~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 8 IVSAYNN--NGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHhc--CCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444544 455679999999999999999998875
No 217
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.031 Score=58.09 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=103.2
Q ss_pred cccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 156 TVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.+=|-++.+++|.+...-+ =+..+=|.++|++|.|||-||++|++.. ...| +-|..|++.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF---IrvvgSElVqKY 225 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF---IRVVGSELVQKY 225 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE---EEeccHHHHHHH
Confidence 3457888888888776321 1345678899999999999999999986 3333 233333433322
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhc-cCcEEEEEccCCCcc----------------chhhhCCCCCC--CCCCcEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILS-RKEFVLLLDDIWKPI----------------NLKDMGVPLQN--LNAGSKI 285 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------------~~~~l~~~l~~--~~~gs~i 285 (888)
+ | ....++..+.+.-+ +.+..|++|.++... ..-++...+.. ....-||
T Consensus 226 i---G---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 226 I---G---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred h---c---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 1 1 12334444444443 568999999986320 12222222222 2345788
Q ss_pred EEEecchhhhh----ccCC-c-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc----cHHHHHHH
Q 046470 286 VLTTRSVDVCD----QMDA-E-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP----LALKTVGR 355 (888)
Q Consensus 286 ivTtR~~~v~~----~~~~-~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P----lai~~~~~ 355 (888)
|..|-..++.. +.|- + .+++..-+.+-=.++|+-++.......+-+ .+.+++.|.|.- -|+.+=|+
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEAG 369 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAICTEAG 369 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHHh
Confidence 88776655521 1222 2 677774444555567777766544333333 355666776654 34444455
Q ss_pred Hhc
Q 046470 356 AMK 358 (888)
Q Consensus 356 ~l~ 358 (888)
+++
T Consensus 370 m~A 372 (406)
T COG1222 370 MFA 372 (406)
T ss_pred HHH
Confidence 543
No 218
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.75 E-value=0.00027 Score=81.42 Aligned_cols=114 Identities=26% Similarity=0.171 Sum_probs=67.3
Q ss_pred HhcCCcccEEEcCCC-CCcc--cChhhhcccCCCEEeccCC--ccccc----CcccccCCccceeccccccccCCcc-cc
Q 046470 544 FQSMSSLRVLSLGSN-ALSK--LPSGISSLVSLHHLDLSWT--EITGL----PQELKALEKLRYLNLEHAYMLSIIP-HQ 613 (888)
Q Consensus 544 ~~~l~~L~~L~Ls~~-~i~~--lp~~i~~L~~L~~L~L~~~--~i~~L----p~~i~~L~~L~~L~l~~~~~l~~lp-~~ 613 (888)
...++.|+.|.+.++ .+.. +-.....+++|+.|+++++ .+... +.....+++|+.|++++|......- ..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 344677888888777 5554 3345667788888888763 22221 2234556788888888876323221 11
Q ss_pred ccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEech
Q 046470 614 LISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSS 671 (888)
Q Consensus 614 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 671 (888)
+...+++|++|.+.+|.... +.....-...+++|+.|+++.+..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt--------------~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLT--------------DEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCccc--------------hhHHHHHHHhcCcccEEeeecCcc
Confidence 12347788888877676421 222333345567788888876554
No 219
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.75 E-value=0.012 Score=66.80 Aligned_cols=55 Identities=22% Similarity=0.354 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHHhhcC---CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEE
Q 046470 157 VVGQELLLYRVWKCITDQ---DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAA 216 (888)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 216 (888)
++--.+-++++..||... ....+++.+.|++|+||||.++.+++.. .|+.+-|..
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 444456778888888652 2345799999999999999999998876 466677764
No 220
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0045 Score=56.64 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=38.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChh
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
+|.|-|++|.||||+|+.+.+.. . .-.|+.+.+++++++..+++-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---g-----l~~vsaG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---G-----LKLVSAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---C-----CceeeccHHHHHHHHHcCCCHH
Confidence 68999999999999999999887 1 2245666999999999988654
No 221
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.73 E-value=0.0046 Score=65.92 Aligned_cols=98 Identities=18% Similarity=0.172 Sum_probs=58.7
Q ss_pred HHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCE-EEEEEec-------chHHHHHHHcCCChhh--
Q 046470 165 YRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDV-VIWAAVS-------TLQDDIGKRIGFSENW-- 234 (888)
Q Consensus 165 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~-------~l~~~i~~~l~~~~~~-- 234 (888)
.++++.+..-. .-.-+.|+|.+|+|||||++.+.+... ..+-+. ++|+.+. ++.+.+...+..+..+
T Consensus 121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 44777776422 224569999999999999999988762 223344 4676666 6666666655433210
Q ss_pred -hcCCCHHHHHHHHHHHh--ccCcEEEEEccCCC
Q 046470 235 -WKKKSPEEKAVDISSIL--SRKEFVLLLDDIWK 265 (888)
Q Consensus 235 -~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 265 (888)
............+.+++ ++++++||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 00011111222333333 58899999999864
No 222
>PRK04132 replication factor C small subunit; Provisional
Probab=96.69 E-value=0.02 Score=68.12 Aligned_cols=145 Identities=8% Similarity=0.074 Sum_probs=86.3
Q ss_pred CCCCcHHHHHHHHHhccccccCCC-CEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHh-----c-cCcEEE
Q 046470 186 IGGVGKTTLLTQVNNNFCHEQHHF-DVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSIL-----S-RKEFVL 258 (888)
Q Consensus 186 ~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~Ll 258 (888)
|.++||||+|.++++.. -. ..+ ..++-+++++ ....+.+...+.++. . .+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l-~g-~~~~~~~lElNASd-----------------~rgid~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FG-ENWRHNFLELNASD-----------------ERGINVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhh-hc-ccccCeEEEEeCCC-----------------cccHHHHHHHHHHHHhcCCcCCCCCEEE
Confidence 77899999999999885 11 112 2344454441 111222222222222 1 245799
Q ss_pred EEccCCCcc--chhhhCCCCCCCCCCcEEEEEecc-hhhhhccCC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChH
Q 046470 259 LLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMDA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIP 333 (888)
Q Consensus 259 VlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~ 333 (888)
|+|+++... ....+...+.......++|++|.+ ..+..-... ..+++.+++.++-...+.+.+.......+ +
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~---~ 711 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT---E 711 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---H
Confidence 999998653 444444444333345666665554 444333232 38999999999999888877654332222 5
Q ss_pred HHHHHHHHHhCCCccHHHH
Q 046470 334 ELAKTLARECGGLPLALKT 352 (888)
Q Consensus 334 ~~~~~i~~~c~g~Plai~~ 352 (888)
+....|++.|+|.+-.+..
T Consensus 712 e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 6889999999998854433
No 223
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.67 E-value=0.0081 Score=72.18 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=61.1
Q ss_pred CcccchHHHHHHHHHHhhcC-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHH--HHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQD--DIG 225 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~--~i~ 225 (888)
..++|.+..++.+.+.+... +....++.++|+.|+|||++|+.++... . ...+.++.++... .+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~---~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---G---VHLERFDMSEYMEKHTVS 527 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---c---CCeEEEeCchhhhcccHH
Confidence 45789999999988887631 1224578899999999999999998876 1 2345556553222 122
Q ss_pred HHcCCChhhhcCCCHHHHHHHHHHHhccC-cEEEEEccCCCc
Q 046470 226 KRIGFSENWWKKKSPEEKAVDISSILSRK-EFVLLLDDIWKP 266 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~ 266 (888)
..++.+.. +...+.. ..+.+.++.+ .-+++||+++..
T Consensus 528 ~lig~~~g-yvg~~~~---~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 528 RLIGAPPG-YVGFEQG---GLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHhcCCCC-Ccccchh---hHHHHHHHhCCCeEEEEechhhc
Confidence 22332211 1111111 1233444434 459999999853
No 224
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.058 Score=60.29 Aligned_cols=83 Identities=24% Similarity=0.340 Sum_probs=45.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--c-----hHHHHHHHcCCChhhhcCCCHHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--T-----LQDDIGKRIGFSENWWKKKSPEEKAVDISS 249 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~-----l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 249 (888)
...+|+|+|++|+||||++..+.... ..+.....+..++.. . -+......++.... ...+...+...+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~ 425 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLER 425 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHH
Confidence 35799999999999999999988765 222222334444432 1 12222233333221 12233344444433
Q ss_pred HhccCcEEEEEccCC
Q 046470 250 ILSRKEFVLLLDDIW 264 (888)
Q Consensus 250 ~l~~k~~LlVlDdv~ 264 (888)
+. ..-+||+|..-
T Consensus 426 -l~-~~DLVLIDTaG 438 (559)
T PRK12727 426 -LR-DYKLVLIDTAG 438 (559)
T ss_pred -hc-cCCEEEecCCC
Confidence 33 35588888874
No 225
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.046 Score=58.07 Aligned_cols=173 Identities=9% Similarity=0.004 Sum_probs=94.5
Q ss_pred HHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCCh------hhhc
Q 046470 164 LYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSE------NWWK 236 (888)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~------~~~~ 236 (888)
.+.+.+.+..+ .-...+.+.|+.|+||+++|+.++...--. ...... .|.. ..-+.+.. -..++ ....
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~-~~~~~~--~Cg~C~sC~~~~~-g~HPD~~~i~p~~~~ 85 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQ-TPQGDQ--PCGQCHSCHLFQA-GNHPDFHILEPIDNK 85 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCC-CCCCCC--CCCCCHHHHHHhc-CCCCCEEEEccccCC
Confidence 34555555541 234678899999999999999988776210 100000 0000 01111110 00000 0001
Q ss_pred CCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecc-hhhhhccCC--ceeEcC
Q 046470 237 KKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMDA--EKVEVS 306 (888)
Q Consensus 237 ~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~--~~~~l~ 306 (888)
.-..++.. .+.+.+ .+++-++|+|+++.. .....+...+.....++.+|++|.+ ..+..-... ..+.+.
T Consensus 86 ~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~ 164 (325)
T PRK06871 86 DIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIH 164 (325)
T ss_pred CCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCC
Confidence 12233333 233333 356678899999864 3344444444444456667766665 444433333 388999
Q ss_pred CCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 307 CLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 307 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
+++.++..+.+.+..... ...+...++.++|.|+.+
T Consensus 165 ~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 165 PPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 999999999888764211 224667788999999644
No 226
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.63 E-value=0.002 Score=62.50 Aligned_cols=74 Identities=28% Similarity=0.305 Sum_probs=47.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEE
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFV 257 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 257 (888)
..-+.++|..|+|||.||.++.+... . .--.+.++.+++++..+.... ......... +.+. +-=|
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~--~-~g~~v~f~~~~~L~~~l~~~~-------~~~~~~~~~----~~l~-~~dl 111 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI--R-KGYSVLFITASDLLDELKQSR-------SDGSYEELL----KRLK-RVDL 111 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH--H-TT--EEEEEHHHHHHHHHCCH-------CCTTHCHHH----HHHH-TSSC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc--c-CCcceeEeecCceeccccccc-------cccchhhhc----Cccc-cccE
Confidence 45699999999999999999998872 2 233567888888777765432 111222222 2333 3458
Q ss_pred EEEccCCCc
Q 046470 258 LLLDDIWKP 266 (888)
Q Consensus 258 lVlDdv~~~ 266 (888)
|||||+-..
T Consensus 112 LilDDlG~~ 120 (178)
T PF01695_consen 112 LILDDLGYE 120 (178)
T ss_dssp EEEETCTSS
T ss_pred eccccccee
Confidence 889999643
No 227
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.61 E-value=0.03 Score=67.55 Aligned_cols=171 Identities=15% Similarity=0.153 Sum_probs=93.9
Q ss_pred cccchHHHHHHHHHHhhc-----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 156 TVVGQELLLYRVWKCITD-----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
++.|.+..++++.+.+.- +-...+-|.++|++|+|||++|+++++.. ...| +.+..+++...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f---i~v~~~~l~~~- 526 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF---IAVRGPEILSK- 526 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehHHHhhc-
Confidence 467888887777666531 11234568899999999999999999876 3333 23333332211
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc---------c-----hhhhCCCCCC--CCCCcEEEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI---------N-----LKDMGVPLQN--LNAGSKIVLT 288 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~-----~~~l~~~l~~--~~~gs~iivT 288 (888)
+.+.+...+...+...-+..+.+|++|+++... . ...+...+.. ...+.-||.|
T Consensus 527 ----------~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~a 596 (733)
T TIGR01243 527 ----------WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAA 596 (733)
T ss_pred ----------ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 112222333333344445678999999986421 0 1111111211 1223345556
Q ss_pred ecchhhhh--cc---CCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 289 TRSVDVCD--QM---DAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 289 tR~~~v~~--~~---~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
|...+... .. .-+ .+.+...+.++-.++|+............ ....+++.+.|.-
T Consensus 597 Tn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~----~l~~la~~t~g~s 657 (733)
T TIGR01243 597 TNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV----DLEELAEMTEGYT 657 (733)
T ss_pred CCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC----CHHHHHHHcCCCC
Confidence 65443321 11 223 77888888888888987665433211111 2456777777754
No 228
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.60 E-value=0.0079 Score=73.11 Aligned_cols=104 Identities=23% Similarity=0.324 Sum_probs=60.8
Q ss_pred CcccchHHHHHHHHHHhhcC-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH--HH
Q 046470 155 HTVVGQELLLYRVWKCITDQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD--IG 225 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~--i~ 225 (888)
..++|.+..++.+...+... +....++.++|+.|+|||++|+.+++.. ...-...+.++.+..... +.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l---~~~~~~~i~id~se~~~~~~~~ 644 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM---FDSDDAMVRIDMSEFMEKHSVS 644 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh---hcCCCcEEEEEhHHhhhhhhHH
Confidence 46889999998888887531 1223578899999999999999998765 122223455666543322 22
Q ss_pred HHcCCChhhhcCCCHHHHHHHHHHHhccC-cEEEEEccCCC
Q 046470 226 KRIGFSENWWKKKSPEEKAVDISSILSRK-EFVLLLDDIWK 265 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~ 265 (888)
.-+|.+.. +...+.. ..+.+.++.+ .-+|+|||+..
T Consensus 645 ~LiG~~pg-y~g~~~~---g~l~~~v~~~p~~vLllDEiek 681 (857)
T PRK10865 645 RLVGAPPG-YVGYEEG---GYLTEAVRRRPYSVILLDEVEK 681 (857)
T ss_pred HHhCCCCc-ccccchh---HHHHHHHHhCCCCeEEEeehhh
Confidence 22332211 1111111 1233333333 36999999974
No 229
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.59 E-value=0.018 Score=69.44 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=93.6
Q ss_pred cccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 156 TVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
++.|.+..++++.+.+.-. -...+-|.++|++|+|||++|+.+++.. ...| +.+..+.+...
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~~i~~~- 251 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGPEIMSK- 251 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecHHHhcc-
Confidence 4789999998888776321 0234568899999999999999998876 2222 33333322211
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--------c-----hhhhCCCCCC-CCCCcEEEE-Ee
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--------N-----LKDMGVPLQN-LNAGSKIVL-TT 289 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l~~-~~~gs~iiv-Tt 289 (888)
. .......+...+.......+.+|++||++... . ...+...+.. ...+..++| ||
T Consensus 252 ---~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 252 ---Y-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred ---c-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec
Confidence 0 11122233333444445667899999986421 0 1112111111 122334444 44
Q ss_pred cchh-hhh---ccC-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc
Q 046470 290 RSVD-VCD---QMD-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL 348 (888)
Q Consensus 290 R~~~-v~~---~~~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 348 (888)
...+ +-. ..+ -. .+.+...+.++-.+++........... ......+++.+.|.--
T Consensus 322 n~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 322 NRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred CChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCCH
Confidence 4322 211 111 12 677888888888888886543222111 2235678888888653
No 230
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.57 E-value=0.0096 Score=72.72 Aligned_cols=105 Identities=23% Similarity=0.312 Sum_probs=61.2
Q ss_pred CcccchHHHHHHHHHHhhcC-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH--HH
Q 046470 155 HTVVGQELLLYRVWKCITDQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD--IG 225 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~--i~ 225 (888)
..++|.+..++.+.+.+... .....++.++|+.|+|||++|+.+.... ...-...+.++.+..... +.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechhhcccchHH
Confidence 45899999999999988642 1124578899999999999999999875 222233445555532221 12
Q ss_pred HHcCCChhhhcCCCHHHHHHHHHHHhccC-cEEEEEccCCCc
Q 046470 226 KRIGFSENWWKKKSPEEKAVDISSILSRK-EFVLLLDDIWKP 266 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~ 266 (888)
.-++.+.. +.+.+. ...+.+.++.+ ..+|+||++...
T Consensus 642 ~l~g~~~g-~~g~~~---~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 642 RLIGAPPG-YVGYEE---GGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred HhcCCCCC-ccCccc---ccHHHHHHHcCCCcEEEEeccccC
Confidence 22232211 111110 01233333333 349999999754
No 231
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.57 E-value=0.0023 Score=67.87 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=41.3
Q ss_pred cccchHHHHHHHHHHhhcC----CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCITDQ----DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|.++.++++++++... +...+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999652 2356899999999999999999999887
No 232
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.54 E-value=0.029 Score=63.21 Aligned_cols=173 Identities=18% Similarity=0.127 Sum_probs=90.7
Q ss_pred cccchHHHHHHHHHHhh---c-----CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHH
Q 046470 156 TVVGQELLLYRVWKCIT---D-----QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKR 227 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~---~-----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~ 227 (888)
++.|.+..++.+.+... . +-...+-|.++|++|.|||.+|+++++.. .-.| +-++.+.+...
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~l~~~---- 298 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGKLFGG---- 298 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHHhccc----
Confidence 46787766665554321 1 11234678899999999999999999876 2222 12222221110
Q ss_pred cCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc-------c-------hhhhCCCCCCCCCCcEEEEEecchh
Q 046470 228 IGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI-------N-------LKDMGVPLQNLNAGSKIVLTTRSVD 293 (888)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~-------~~~l~~~l~~~~~gs~iivTtR~~~ 293 (888)
+.+.+...+.+.+...-...+++|++|+++..- + +..+...+.....+.-||.||.+.+
T Consensus 299 -------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 299 -------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred -------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 011222233333333334578999999997420 0 0011111111222333455665533
Q ss_pred h-----hhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 294 V-----CDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 294 v-----~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
- .+...-+ .+.++.-+.++-.++|+.+.......... ......+++.+.|.-
T Consensus 372 ~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 372 LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 2 1211223 67888888899999998887653211100 223456666666643
No 233
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.54 E-value=0.0019 Score=58.46 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998875
No 234
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.52 E-value=0.033 Score=57.33 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=96.2
Q ss_pred CcccchHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIG 225 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~ 225 (888)
..++|-.++..++-+++... .++..-+.|+|+.|.|||+|...+..+......+| +-|... -.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 35789999999999888652 24556788999999999999887776642223333 333333 1334444
Q ss_pred HHcCCChh--hhcCCCHHHHHHHHHHHhcc------CcEEEEEccCCCccc------hhhh-CCCCCCCCCCcEEEEEec
Q 046470 226 KRIGFSEN--WWKKKSPEEKAVDISSILSR------KEFVLLLDDIWKPIN------LKDM-GVPLQNLNAGSKIVLTTR 290 (888)
Q Consensus 226 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~------~~~l-~~~l~~~~~gs~iivTtR 290 (888)
+++..... .....+..+-...+-+.|+. -++..|+|.++-... +-.+ ...-....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 44432111 01222334444455555543 258888888764311 1111 001111234556678999
Q ss_pred ch-------hhhhccCCc-eeEcCCCChHHHHHHHHHHhh
Q 046470 291 SV-------DVCDQMDAE-KVEVSCLAHDEAWKLFQKMVE 322 (888)
Q Consensus 291 ~~-------~v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~ 322 (888)
-. .|-++.... ++-+++++-++...++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 63 344444545 667788888888888888763
No 235
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.49 E-value=0.0026 Score=59.01 Aligned_cols=107 Identities=16% Similarity=0.149 Sum_probs=58.5
Q ss_pred cchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcC
Q 046470 158 VGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKK 237 (888)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~ 237 (888)
||+-..++++.+.+..-......|.|+|..|+||+++|+.++.........|..+- . ..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~------------------~---~~ 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID------------------C---AS 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC------------------H---HC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec------------------h---hh
Confidence 46666677777666543234456789999999999999999887622223332110 0 11
Q ss_pred CCHHHHHHHHHHHhccCcEEEEEccCCCcc--chhhhCCCCC-CCCCCcEEEEEecch
Q 046470 238 KSPEEKAVDISSILSRKEFVLLLDDIWKPI--NLKDMGVPLQ-NLNAGSKIVLTTRSV 292 (888)
Q Consensus 238 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~iivTtR~~ 292 (888)
.+ .+ .+.+ .+.--|+|+|++... ....+...+. ......|+|.||+..
T Consensus 60 ~~-~~---~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 LP-AE---LLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TC-HH---HHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred Cc-HH---HHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 11 11 1111 255567899997642 2222222222 124577999998863
No 236
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.47 E-value=0.014 Score=71.18 Aligned_cols=105 Identities=24% Similarity=0.293 Sum_probs=60.4
Q ss_pred CcccchHHHHHHHHHHhhc-------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchH--HHHH
Q 046470 155 HTVVGQELLLYRVWKCITD-------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQ--DDIG 225 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~--~~i~ 225 (888)
..++|.+..++.+...+.. .+....++.++|+.|+|||+||+.+.+.. -..-...+-++.++.. ..+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhccccccHH
Confidence 5689999999999888753 11223567789999999999999998865 1111233444444211 1122
Q ss_pred HHcCCChhhhcCCCHHHHHHHHHHHhccCc-EEEEEccCCCc
Q 046470 226 KRIGFSENWWKKKSPEEKAVDISSILSRKE-FVLLLDDIWKP 266 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~ 266 (888)
.-++.+. .+...+.. ..+.+.++.++ -+++||+++..
T Consensus 586 ~l~g~~~-gyvg~~~~---~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 586 KLIGSPP-GYVGYNEG---GQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred HhcCCCC-cccCcCcc---chHHHHHHhCCCeEEEECChhhC
Confidence 2222211 01111111 12445555555 58999999853
No 237
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.1 Score=58.79 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=89.4
Q ss_pred cccchHHHHHHHHHHhhc-----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHH
Q 046470 156 TVVGQELLLYRVWKCITD-----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQD 222 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~ 222 (888)
++=|.|+-+.++-+...- +-...+-|..+|++|.|||++|+++++.. +-.| ++++ +++.
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgpEL~s 506 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGPELFS 506 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCHHHHH
Confidence 444577666666544431 11456788899999999999999999986 4444 2222 2221
Q ss_pred HHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc-------------chhhhCCCCCCCCCCcEEEE--
Q 046470 223 DIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI-------------NLKDMGVPLQNLNAGSKIVL-- 287 (888)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~~~~~gs~iiv-- 287 (888)
. |-+.++..+.+.+++.-+--+.+|+||.++... .+..+...+........|+|
T Consensus 507 k-----------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 507 K-----------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred H-----------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEe
Confidence 1 223344455555555555667999999986421 01222222222222223433
Q ss_pred -Eecchhh-hhccC---Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHH
Q 046470 288 -TTRSVDV-CDQMD---AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELA 336 (888)
Q Consensus 288 -TtR~~~v-~~~~~---~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~ 336 (888)
|-|...+ ...+. -+ .+.++.=+.+--.++|+.++.........++++++
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 4444443 11222 23 56666666666778999888765433333444443
No 238
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.02 Score=64.00 Aligned_cols=185 Identities=16% Similarity=0.196 Sum_probs=108.7
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcccccc-CCCC--EEEEEEecchHHHHHHH--cC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ-HHFD--VVIWAAVSTLQDDIGKR--IG 229 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~--~~~wv~~~~l~~~i~~~--l~ 229 (888)
+++||.+.-...|...+... .-.......|+-|+||||+|+-++...--.. ...+ ..+ ..-+.|... ..
T Consensus 16 ~evvGQe~v~~~L~nal~~~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C-----~~Ck~I~~g~~~D 89 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC-----ISCKEINEGSLID 89 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh-----hhhHhhhcCCccc
Confidence 35799999999999988762 2345677899999999999999887651111 1111 111 111122211 00
Q ss_pred CCh-hhhcCCCHHHHHHHHHHHh----ccCcEEEEEccCCC--ccchhhhCCCCCCCCCCcEEEEEecc-hhhhhcc--C
Q 046470 230 FSE-NWWKKKSPEEKAVDISSIL----SRKEFVLLLDDIWK--PINLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQM--D 299 (888)
Q Consensus 230 ~~~-~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~--~ 299 (888)
+-. +.-.....++....+.+.. +++-=+.|+|+|.- ...|..+..-+.....+.+.|+.|.+ ..+..-. .
T Consensus 90 viEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSR 169 (515)
T COG2812 90 VIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSR 169 (515)
T ss_pred chhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhc
Confidence 000 0001222333222222211 34556899999974 45677776666544556666665555 4443222 2
Q ss_pred CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc
Q 046470 300 AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL 348 (888)
Q Consensus 300 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 348 (888)
+..|.++.++.++-...+...+..+..... ++...-|++..+|..-
T Consensus 170 cq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 170 CQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred cccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 238999999999999999988876553333 5667777777777554
No 239
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.37 E-value=0.0093 Score=57.11 Aligned_cols=113 Identities=18% Similarity=0.254 Sum_probs=63.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecch-----HHHHHHHcCCChhhhcCCCHHHHHHHHHHHhc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTL-----QDDIGKRIGFSENWWKKKSPEEKAVDISSILS 252 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l-----~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 252 (888)
-.+++|+|..|.|||||.+.++... ......+++.-..+ .+.....++... +-...+...-.+...+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~---qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDARRAGIAMVY---QLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHHhcCeEEEE---ecCHHHHHHHHHHHHHh
Confidence 4689999999999999999998765 23344455433211 111111222111 12233344445666677
Q ss_pred cCcEEEEEccCCCccc---hhhhCCCCCC-CCCCcEEEEEecchhhhhc
Q 046470 253 RKEFVLLLDDIWKPIN---LKDMGVPLQN-LNAGSKIVLTTRSVDVCDQ 297 (888)
Q Consensus 253 ~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~iivTtR~~~v~~~ 297 (888)
.++-++++|+.-..-+ ...+...+.. ...|..||++|.+...+..
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7888999999864322 2222222211 1236678888888664443
No 240
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.024 Score=61.66 Aligned_cols=47 Identities=28% Similarity=0.241 Sum_probs=36.8
Q ss_pred cccchHH---HHHHHHHHhhcCC-------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQEL---LLYRVWKCITDQD-------KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~---~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++-|-|+ ++++|+++|.++. .=.+-|.++|++|.|||-||++|+-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567654 6788889997741 234678899999999999999998876
No 241
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.36 E-value=0.029 Score=60.27 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=35.5
Q ss_pred ccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 157 VVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++|....++++.+.+..-.....-|.|+|..|+||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777777775533344568899999999999999998765
No 242
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.057 Score=57.98 Aligned_cols=175 Identities=10% Similarity=0.009 Sum_probs=95.7
Q ss_pred HHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcccccc-CC-CCEEEEEEecchHHHHHHHcCCCh------hh
Q 046470 163 LLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ-HH-FDVVIWAAVSTLQDDIGKRIGFSE------NW 234 (888)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~-f~~~~wv~~~~l~~~i~~~l~~~~------~~ 234 (888)
.-+++.+.+..+ .-...+.+.|+.|+||+|+|..++...--.. .. -.|- .| .--+.+. ....++ +.
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg--~C--~sC~~~~-~g~HPD~~~i~p~~ 83 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCG--HC--RGCQLMQ-AGTHPDYYTLTPEK 83 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CC--HHHHHHH-cCCCCCEEEEeccc
Confidence 345566666552 3356788999999999999999877651100 00 0000 00 0000000 000000 00
Q ss_pred -hcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecc-hhhhhccC--Ccee
Q 046470 235 -WKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMD--AEKV 303 (888)
Q Consensus 235 -~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~--~~~~ 303 (888)
...-..++..+ +.+.+ .+++-++|+|+++.. +....+...+..-..++.+|++|.+ ..+..-.. ...+
T Consensus 84 ~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 84 GKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred ccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 01122333332 33333 356679999999864 3344444444444456666666665 44543323 2378
Q ss_pred EcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 304 EVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
.+.+++.+++.+.+.+..+. + .+.+..+++.++|.|.....
T Consensus 163 ~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 163 YLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred cCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHHH
Confidence 99999999999888654321 1 34577889999999965433
No 243
>PRK04296 thymidine kinase; Provisional
Probab=96.34 E-value=0.0055 Score=60.27 Aligned_cols=109 Identities=19% Similarity=0.115 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEe--c--chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccC
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAV--S--TLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRK 254 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~--~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k 254 (888)
.++.|+|..|.||||+|..+..+. ..+...++.+.- . .....++.+++............++...+.+ ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCC
Confidence 477899999999999999988876 222233333422 1 2233455555543221112334455555555 3345
Q ss_pred cEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecchh
Q 046470 255 EFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSVD 293 (888)
Q Consensus 255 ~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (888)
.-+||+|.+.-. ++..++...+ ...|..||+|.++.+
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 569999999642 2232222221 235788999999853
No 244
>PRK06696 uridine kinase; Validated
Probab=96.34 E-value=0.0057 Score=62.04 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHhhc-CCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 159 GQELLLYRVWKCITD-QDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 159 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|++-+++|.+.+.. ..+...+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467777888888764 23567899999999999999999999876
No 245
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.31 E-value=0.017 Score=61.12 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhhh---cCCCHHHHHHHHHHHh
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENWW---KKKSPEEKAVDISSIL 251 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~l 251 (888)
+.-+++-|+|++|+||||||..++... ...-..++|++.. .+-...+++++...+.. ...+.++....+...+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 445789999999999999999988766 2334567888876 34445566666543321 2334555555555554
Q ss_pred c-cCcEEEEEccCC
Q 046470 252 S-RKEFVLLLDDIW 264 (888)
Q Consensus 252 ~-~k~~LlVlDdv~ 264 (888)
+ +..-++|+|-|-
T Consensus 130 ~s~~~~lIVIDSva 143 (325)
T cd00983 130 RSGAVDLIVVDSVA 143 (325)
T ss_pred hccCCCEEEEcchH
Confidence 3 456799999875
No 246
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.30 E-value=0.015 Score=60.39 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEE
Q 046470 158 VGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVV 212 (888)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~ 212 (888)
-+|..+..-.++.|.+ +++..|.+.|.+|.|||.||.+..=...-.++.|..+
T Consensus 227 ~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 227 RPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred CcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 3466666777788888 7899999999999999999887544432234445444
No 247
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.29 E-value=0.023 Score=54.17 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHhhcCCCC-ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCC----h
Q 046470 159 GQELLLYRVWKCITDQDKN-RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFS----E 232 (888)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~----~ 232 (888)
|.+...+.+.+.+.. ++ ...+.++|+.|+||+|+|..+.+..-. ...... .+.. ...+.+...-... .
T Consensus 1 gq~~~~~~L~~~~~~--~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~-~~~~~~---~c~~c~~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS--GRLPHALLFHGPSGSGKKTLALAFARALLC-SNPNED---PCGECRSCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHC--TC--SEEEEECSTTSSHHHHHHHHHHHHC--TT-CTT-----SSSHHHHHHHTT-CTTEEEEE
T ss_pred CcHHHHHHHHHHHHc--CCcceeEEEECCCCCCHHHHHHHHHHHHcC-CCCCCC---CCCCCHHHHHHHhccCcceEEEe
Confidence 556667777777766 44 457899999999999999998887621 111111 1111 1111111110000 0
Q ss_pred hhhc--CCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecchh-hhhccCCc-
Q 046470 233 NWWK--KKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSVD-VCDQMDAE- 301 (888)
Q Consensus 233 ~~~~--~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~- 301 (888)
.... ....++.. .+.+.+ .++.=++|+||++.. +....+...+.....++++|++|++.+ +..-....
T Consensus 75 ~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc 153 (162)
T PF13177_consen 75 PDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRC 153 (162)
T ss_dssp TTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTS
T ss_pred cccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhc
Confidence 0000 12334444 444443 245679999999864 344455444545556888888888754 33222222
Q ss_pred -eeEcCCCC
Q 046470 302 -KVEVSCLA 309 (888)
Q Consensus 302 -~~~l~~L~ 309 (888)
.+.+.++|
T Consensus 154 ~~i~~~~ls 162 (162)
T PF13177_consen 154 QVIRFRPLS 162 (162)
T ss_dssp EEEEE----
T ss_pred eEEecCCCC
Confidence 55665553
No 248
>PRK06762 hypothetical protein; Provisional
Probab=96.27 E-value=0.029 Score=53.93 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998775
No 249
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.27 E-value=0.0094 Score=58.01 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEE
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAA 216 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 216 (888)
....+|.+.|+.|+||||+|+.+++.. ...+...+++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 345699999999999999999999887 34455555554
No 250
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.22 E-value=0.011 Score=70.18 Aligned_cols=102 Identities=23% Similarity=0.262 Sum_probs=60.4
Q ss_pred CcccchHHHHHHHHHHhhcC-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHH--HHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQD--DIG 225 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~--~i~ 225 (888)
..++|.+..++.|.+.+... ......+.++|+.|+|||++|+.++... .. ..+.++.++... .+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~---~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GI---ELLRFDMSEYMERHTVS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CC---CcEEeechhhcccccHH
Confidence 35799999999998888631 1234578999999999999999998876 22 233445552211 223
Q ss_pred HHcCCChhhhcCCCHHHHHHHHHHHhcc-CcEEEEEccCCCc
Q 046470 226 KRIGFSENWWKKKSPEEKAVDISSILSR-KEFVLLLDDIWKP 266 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~ 266 (888)
.-+|.+.. +...+.. ..+.+.++. ..-+|+||+++..
T Consensus 532 ~LiG~~~g-yvg~~~~---g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 532 RLIGAPPG-YVGFDQG---GLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHcCCCCC-ccccccc---chHHHHHHhCCCcEEEeccHhhh
Confidence 33333211 1111111 123333333 3469999999864
No 251
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.21 E-value=0.072 Score=63.88 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|+...++++.+.+..-......|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 358999998888877775432344568899999999999999998875
No 252
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.19 E-value=0.016 Score=59.55 Aligned_cols=86 Identities=24% Similarity=0.445 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCC-CEEEEEEec-------chHHHHHHHcCCChh----hhcCCCH-H---
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHF-DVVIWAAVS-------TLQDDIGKRIGFSEN----WWKKKSP-E--- 241 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~-------~l~~~i~~~l~~~~~----~~~~~~~-~--- 241 (888)
-.-++|+|..|+|||||++.+++.. +.+| +.++++-++ ++.+.+...-..... ...+... .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3568999999999999999999987 3233 455666665 233333321111000 0011111 1
Q ss_pred --HHHHHHHHHh--c-cCcEEEEEccCCCc
Q 046470 242 --EKAVDISSIL--S-RKEFVLLLDDIWKP 266 (888)
Q Consensus 242 --~~~~~l~~~l--~-~k~~LlVlDdv~~~ 266 (888)
.....+.+++ + ++.+|+++||+-..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1223456666 3 88999999998653
No 253
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.17 E-value=0.1 Score=55.35 Aligned_cols=174 Identities=9% Similarity=0.008 Sum_probs=95.3
Q ss_pred HHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCCh-------hh
Q 046470 163 LLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSE-------NW 234 (888)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~-------~~ 234 (888)
..+++.+.+..+ .-...+.+.|+.|+||+++|+.+....--...... .|.. ..-+.+. ....++ ..
T Consensus 11 ~~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C~sC~~~~-~g~HPD~~~i~p~~~ 84 (319)
T PRK06090 11 VWQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFCHSCELMQ-SGNHPDLHVIKPEKE 84 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCHHHHHHH-cCCCCCEEEEecCcC
Confidence 344555555441 33468899999999999999998776511110000 0000 0000010 000000 00
Q ss_pred hcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecc-hhhhhccCCc--eeE
Q 046470 235 WKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMDAE--KVE 304 (888)
Q Consensus 235 ~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~~--~~~ 304 (888)
...-..+++. .+.+.+ .+++-++|+|+++.. .....+...+..-..++.+|++|.+ ..+..-.... .+.
T Consensus 85 ~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~ 163 (319)
T PRK06090 85 GKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWV 163 (319)
T ss_pred CCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEe
Confidence 0112333333 333333 244568999999864 3344444444444456666665554 4554444333 889
Q ss_pred cCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 305 VSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 305 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
+.+++.+++.+.+.+.. . . .+..+++.++|.|+.+..+.
T Consensus 164 ~~~~~~~~~~~~L~~~~---~-------~-~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 164 VTPPSTAQAMQWLKGQG---I-------T-VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred CCCCCHHHHHHHHHHcC---C-------c-hHHHHHHHcCCCHHHHHHHh
Confidence 99999999999886541 1 1 24577899999999776553
No 254
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.13 E-value=0.025 Score=59.77 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhh---hcCCCHHHHHHHHHHHh
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENW---WKKKSPEEKAVDISSIL 251 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l 251 (888)
+.-+++-|+|++|+||||||..+.... ...-..++|++.. ..-...+++++...+. ....+.++....+...+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 455799999999999999999987776 2334567888877 3333456666654332 12334555555555555
Q ss_pred c-cCcEEEEEccCCC
Q 046470 252 S-RKEFVLLLDDIWK 265 (888)
Q Consensus 252 ~-~k~~LlVlDdv~~ 265 (888)
+ +..-++|+|-|-.
T Consensus 130 ~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 130 RSGAVDIIVVDSVAA 144 (321)
T ss_pred hccCCcEEEEcchhh
Confidence 3 4567999998853
No 255
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.10 E-value=0.01 Score=58.88 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHH-cCCChhhhcCCCHHHHHHHHHHHhccCcEE
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKR-IGFSENWWKKKSPEEKAVDISSILSRKEFV 257 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~-l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 257 (888)
.+|.|+|+.|.||||++..+.... .......+++--..+ +..... ...........+.......++..+...+=.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e~~~-E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ 77 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIEDPI-EFVHESKRSLINQREVGLDTLSFENALKAALRQDPDV 77 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEcCCc-cccccCccceeeecccCCCccCHHHHHHHHhcCCcCE
Confidence 478999999999999999887765 222333444322211 000000 000000000112233455677778777889
Q ss_pred EEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhh
Q 046470 258 LLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDV 294 (888)
Q Consensus 258 lVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 294 (888)
+++|++.+.+.+...... ...|-.++.|+-..++
T Consensus 78 ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 78 ILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred EEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 999999877655433222 1235557777765544
No 256
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.09 E-value=0.021 Score=55.79 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=64.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEE---ec-----ch------HHHHHHHcCCChhh---h-cCC
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAA---VS-----TL------QDDIGKRIGFSENW---W-KKK 238 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~-----~l------~~~i~~~l~~~~~~---~-~~~ 238 (888)
.-.+++|+|..|.|||||++.++... ......+++. +. .. ..++++.+++.... . .-.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 34689999999999999999998865 1222333332 11 11 11134455543210 0 112
Q ss_pred CHHHHHHHHHHHhccCcEEEEEccCCCccc---hhhhCCCCCCC-CC-CcEEEEEecchhhhhcc
Q 046470 239 SPEEKAVDISSILSRKEFVLLLDDIWKPIN---LKDMGVPLQNL-NA-GSKIVLTTRSVDVCDQM 298 (888)
Q Consensus 239 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~-~~-gs~iivTtR~~~v~~~~ 298 (888)
..+...-.+...+-..+-++++|+.-..-+ ...+...+... .. |..||++|.+.+....+
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~ 164 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY 164 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 223334456666777889999999764322 22222222211 12 56788888876654333
No 257
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.08 E-value=0.055 Score=56.27 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 163 LLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-++++..++.. -..|.+.|++|+|||++|+.+++..
T Consensus 10 l~~~~l~~l~~----g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 10 VTSRALRYLKS----GYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHhc----CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555543 2346689999999999999998754
No 258
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.07 E-value=0.21 Score=54.08 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcCC-CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 161 ELLLYRVWKCITDQD-KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 161 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.-.+.+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445567777777643 567899999999999999999999887
No 259
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.06 E-value=0.011 Score=63.53 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|+...+.++.+.+..-.....-|.|+|..|+||+++|+.++..-
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 358999999988888886533344568899999999999999998654
No 260
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.06 E-value=0.0051 Score=60.84 Aligned_cols=104 Identities=21% Similarity=0.225 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhhhcCCCHHHHHHHHHHH-h---
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENWWKKKSPEEKAVDISSI-L--- 251 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l--- 251 (888)
.-+++.|.|++|.||||+++.+.... ... . ..++++.-+ .....+.+..+.... +........... .
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~-~~~-g-~~v~~~apT~~Aa~~L~~~~~~~a~-----Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEAL-EAA-G-KRVIGLAPTNKAAKELREKTGIEAQ-----TIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHH-HHT-T---EEEEESSHHHHHHHHHHHTS-EE-----EHHHHTTEECCEECCSS
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHH-HhC-C-CeEEEECCcHHHHHHHHHhhCcchh-----hHHHHHhcCCccccccc
Confidence 44788899999999999999998876 222 2 334444444 445555555443211 111100000000 0
Q ss_pred --ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEec
Q 046470 252 --SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTR 290 (888)
Q Consensus 252 --~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR 290 (888)
..++-+||+|++.... .+..+..... ..|+|+|+.-=
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD 129 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGD 129 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 1234599999997543 4444433332 24778776543
No 261
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.05 E-value=0.084 Score=62.31 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEE
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVL 258 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 258 (888)
+-|.++|++|.|||++|+.+.... ...| +.++.+++... + .......+...+.......+.+|
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~~~~~----~-------~g~~~~~~~~~f~~a~~~~P~Ii 248 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVEM----F-------VGVGASRVRDMFEQAKKAAPCII 248 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHHhHHh----h-------hcccHHHHHHHHHHHHhcCCcEE
Confidence 459999999999999999998876 2333 23333332211 1 11122233333444445578999
Q ss_pred EEccCCCcc------------c----hhhhCCCCCC--CCCCcEEEEEecchhhhh----ccC-Cc-eeEcCCCChHHHH
Q 046470 259 LLDDIWKPI------------N----LKDMGVPLQN--LNAGSKIVLTTRSVDVCD----QMD-AE-KVEVSCLAHDEAW 314 (888)
Q Consensus 259 VlDdv~~~~------------~----~~~l~~~l~~--~~~gs~iivTtR~~~v~~----~~~-~~-~~~l~~L~~~~a~ 314 (888)
++|+++... . +..+...+.. ...+.-||.||...+... +.+ -+ .+.+..-+.++-.
T Consensus 249 fIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~ 328 (644)
T PRK10733 249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 328 (644)
T ss_pred EehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHH
Confidence 999996531 0 1111111111 122344455666654321 111 22 6778888888888
Q ss_pred HHHHHHhhcccCCCCCChHHHHHHHHHHhCC
Q 046470 315 KLFQKMVERSTLDSHASIPELAKTLARECGG 345 (888)
Q Consensus 315 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 345 (888)
++++.+..........+ ...+++.+.|
T Consensus 329 ~Il~~~~~~~~l~~~~d----~~~la~~t~G 355 (644)
T PRK10733 329 QILKVHMRRVPLAPDID----AAIIARGTPG 355 (644)
T ss_pred HHHHHHhhcCCCCCcCC----HHHHHhhCCC
Confidence 88887765433222222 2345666655
No 262
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.024 Score=57.91 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccc-cccCCCCEEEEEEec--chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccC
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFC-HEQHHFDVVIWAAVS--TLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRK 254 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~~f~~~~wv~~~--~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k 254 (888)
-++|.++|++|.|||+|.+++++..+ +..+.+....-+.+. .++...... .+.-...+.++|++.++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE--------SgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE--------SGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh--------hhhHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999873 223334434444443 343332211 3345667778888888776
Q ss_pred c--EEEEEccCCC
Q 046470 255 E--FVLLLDDIWK 265 (888)
Q Consensus 255 ~--~LlVlDdv~~ 265 (888)
. +.+.+|.|..
T Consensus 249 ~~lVfvLIDEVES 261 (423)
T KOG0744|consen 249 GNLVFVLIDEVES 261 (423)
T ss_pred CcEEEEEeHHHHH
Confidence 5 4667898864
No 263
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.01 E-value=0.13 Score=51.65 Aligned_cols=215 Identities=13% Similarity=0.164 Sum_probs=114.9
Q ss_pred ccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccc---cccCCCCEEEEEEec--chHHHHHH---Hc
Q 046470 157 VVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFC---HEQHHFDVVIWAAVS--TLQDDIGK---RI 228 (888)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~---~~~~~f~~~~wv~~~--~l~~~i~~---~l 228 (888)
+.++++....+...... .+.+-..++|+.|.||-|.+..+.+..- ..+-.-+...|.+-+ ++.-.... .+
T Consensus 15 l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 56777777777665553 6688899999999999998877766641 112234455665544 11000000 00
Q ss_pred CCChhhhcCCCHHHHHHHHHHHh-------c-cCcE-EEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecc-hhhhh
Q 046470 229 GFSENWWKKKSPEEKAVDISSIL-------S-RKEF-VLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRS-VDVCD 296 (888)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~l-------~-~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~ 296 (888)
.+...+...-|..-.++.+++.- + .+.| ++|+-.+++. +.-..++.....-.+.+|+|+..-+ ..+..
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIe 172 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIE 172 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchh
Confidence 00000011111111222222211 1 2334 5666666532 1122222111122345666653332 11222
Q ss_pred ccCCc--eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccC----------CChh
Q 046470 297 QMDAE--KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSR----------SNIG 364 (888)
Q Consensus 297 ~~~~~--~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~----------~~~~ 364 (888)
-.... .+++...+++|-...+++....+....+ .+++.+|+++++|.---...+-..++-+ -..-
T Consensus 173 pIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~ 249 (351)
T KOG2035|consen 173 PIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKP 249 (351)
T ss_pred HHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCc
Confidence 22222 7899999999999999999877664444 8999999999998754333333333222 1234
Q ss_pred HHHHHHHHHHhc
Q 046470 365 DWKRAIKKIRTS 376 (888)
Q Consensus 365 ~w~~~~~~l~~~ 376 (888)
+|+-...+....
T Consensus 250 dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 250 DWEIYIQEIARV 261 (351)
T ss_pred cHHHHHHHHHHH
Confidence 799888776554
No 264
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.082 Score=59.88 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=41.2
Q ss_pred CcccchHHHHHHHHHHhhc----CCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITD----QDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+-+|.++-+++|++++.- ++-.-+++..+|++|||||.+|+.++...
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 3458999999999999964 23456899999999999999999999987
No 265
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.00 E-value=0.046 Score=55.98 Aligned_cols=47 Identities=21% Similarity=0.165 Sum_probs=34.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIG 225 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~ 225 (888)
..-.++.|.|.+|+|||++|.++.... ...-..++||+...-..++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee~~~~i~ 65 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEEHPVQVR 65 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeCCHHHHH
Confidence 456799999999999999999876654 13356788888874333333
No 266
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.045 Score=63.88 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=85.8
Q ss_pred ccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCC------CCEEEEEEecchHHHHHHHcCC
Q 046470 157 VVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHH------FDVVIWAAVSTLQDDIGKRIGF 230 (888)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~------f~~~~wv~~~~l~~~i~~~l~~ 230 (888)
++||+.+++++++.|.....+-+ ..+|.+|||||++|.-++.+. +.+. ...++-.+++. +..
T Consensus 172 vIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rI--v~g~VP~~L~~~~i~sLD~g~----LvA---- 239 (786)
T COG0542 172 VIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRI--VNGDVPESLKDKRIYSLDLGS----LVA---- 239 (786)
T ss_pred CcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHH--hcCCCCHHHcCCEEEEecHHH----Hhc----
Confidence 69999999999999987544433 368999999999998888776 1221 11222222221 111
Q ss_pred ChhhhcCCCHHHHHHHHHHHh-ccCcEEEEEccCCCcc----------chhhhCCCCCCCCCCcEEEEEecchh--h---
Q 046470 231 SENWWKKKSPEEKAVDISSIL-SRKEFVLLLDDIWKPI----------NLKDMGVPLQNLNAGSKIVLTTRSVD--V--- 294 (888)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtR~~~--v--- 294 (888)
+.. -..+.++....+.+.+ +.++..|++|.+.+.. +...+..|-...+.--.|=.||-++- .
T Consensus 240 -Gak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEK 317 (786)
T COG0542 240 -GAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEK 317 (786)
T ss_pred -ccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhh
Confidence 111 1224445555544444 4558999999997531 11222212111122223334555421 1
Q ss_pred --hhccCCceeEcCCCChHHHHHHHHHHh
Q 046470 295 --CDQMDAEKVEVSCLAHDEAWKLFQKMV 321 (888)
Q Consensus 295 --~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 321 (888)
|-...-..+.+..-+.+++...++-..
T Consensus 318 D~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 318 DAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred chHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 212222378899999999999887654
No 267
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.003 Score=62.73 Aligned_cols=70 Identities=27% Similarity=0.398 Sum_probs=49.3
Q ss_pred cccccCCcccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccc-hHHhcCCcccEEEcCCCC
Q 046470 490 FRLTEAPAVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITD-GFFQSMSSLRVLSLGSNA 559 (888)
Q Consensus 490 ~~~~~~~~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~~~ 559 (888)
.++.++.-...++.+..|+|+-|.++.+..+..|.+|+.|+|..|.|..+.. ..+.++++||+|.|..|.
T Consensus 29 ~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 29 CGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred CCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 3444454455677788888888888888888888888888888887766543 225667777777777663
No 268
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.97 E-value=0.039 Score=53.44 Aligned_cols=121 Identities=15% Similarity=0.226 Sum_probs=70.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--------------------------------------
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------------------------------------- 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------------------------------------- 218 (888)
.-.|++|+|+.|.|||||.+.+..-. ..-...+|+...
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 34689999999999999999986654 222234444321
Q ss_pred ------------chHHHHHHHcCCChhh----hcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc---hhhhCCCCCC-
Q 046470 219 ------------TLQDDIGKRIGFSENW----WKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN---LKDMGVPLQN- 278 (888)
Q Consensus 219 ------------~l~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~- 278 (888)
+...++++.+++.+.. .+-+..++..-.|.+.|.-++-++.+|...+.-| ..++......
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 2233344444443321 1223344555567888888889999999876432 1111111111
Q ss_pred CCCCcEEEEEecchhhhhccCCc
Q 046470 279 LNAGSKIVLTTRSVDVCDQMDAE 301 (888)
Q Consensus 279 ~~~gs~iivTtR~~~v~~~~~~~ 301 (888)
...|--.|+.|-....|+.....
T Consensus 183 A~eGmTMivVTHEM~FAr~Vadr 205 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREVADR 205 (240)
T ss_pred HHcCCeEEEEechhHHHHHhhhe
Confidence 23466677777776666655554
No 269
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.97 E-value=0.0079 Score=63.45 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=44.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHH---h-
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSI---L- 251 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~---l- 251 (888)
.....++|||++|.|||.+|+++++.. ...| +-++.+++... +-..+...+.+.+... .
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el---g~~~---i~vsa~eL~sk-----------~vGEsEk~IR~~F~~A~~~a~ 208 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM---GIEP---IVMSAGELESE-----------NAGEPGKLIRQRYREAADIIK 208 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCe---EEEEHHHhhcC-----------cCCcHHHHHHHHHHHHHHHhh
Confidence 346799999999999999999999987 3332 22333333221 1122222233322222 1
Q ss_pred -ccCcEEEEEccCC
Q 046470 252 -SRKEFVLLLDDIW 264 (888)
Q Consensus 252 -~~k~~LlVlDdv~ 264 (888)
++++++|++||++
T Consensus 209 ~~~aPcVLFIDEID 222 (413)
T PLN00020 209 KKGKMSCLFINDLD 222 (413)
T ss_pred ccCCCeEEEEehhh
Confidence 4689999999996
No 270
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.96 E-value=0.029 Score=55.70 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhccCcEEEEEccCCCc------cchhhhCCCCCCCCCCcEEEEEecchhhhhccCC
Q 046470 240 PEEKAVDISSILSRKEFVLLLDDIWKP------INLKDMGVPLQNLNAGSKIVLTTRSVDVCDQMDA 300 (888)
Q Consensus 240 ~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 300 (888)
.++..-.+.+.|-..+-+|+-|+--.. .....+...+ ....|..||+.|-+..+|..++-
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~-~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL-NKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH-HHhcCCEEEEEcCCHHHHHhCCE
Confidence 445555677888888899999976422 1111221111 12347789999999999885544
No 271
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.037 Score=55.81 Aligned_cols=117 Identities=20% Similarity=0.251 Sum_probs=65.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccC----------CC---CEEEEEEec--------------------------
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQH----------HF---DVVIWAAVS-------------------------- 218 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~~~-------------------------- 218 (888)
-..++|+|+.|.|||||.+.+..-....++ .+ ..+.||.=.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 378999999999999999999874311000 01 234554211
Q ss_pred --------chHHHHHHHcCCChh---hhcCCC-HHHHHHHHHHHhccCcEEEEEccCCCc------cchhhhCCCCCCCC
Q 046470 219 --------TLQDDIGKRIGFSEN---WWKKKS-PEEKAVDISSILSRKEFVLLLDDIWKP------INLKDMGVPLQNLN 280 (888)
Q Consensus 219 --------~l~~~i~~~l~~~~~---~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~l~~~~ 280 (888)
+..+..++++++..- .....+ .+.....|.+.|..++=||+||.--.- ..+..+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 112223333333221 112222 233344567788889999999975432 2333333334332
Q ss_pred CCcEEEEEecchhhhh
Q 046470 281 AGSKIVLTTRSVDVCD 296 (888)
Q Consensus 281 ~gs~iivTtR~~~v~~ 296 (888)
|.-|+++|-+-+...
T Consensus 189 -g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 -GKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCEEEEEeCCcHHhH
Confidence 788999998855443
No 272
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.94 E-value=0.028 Score=61.20 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH---HHHcCCChhhh---cCCCHHHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI---GKRIGFSENWW---KKKSPEEKAVDISSI 250 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i---~~~l~~~~~~~---~~~~~~~~~~~l~~~ 250 (888)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+-..++ +..++...+.. ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~-- 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE-- 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH--
Confidence 457999999999999999999988762 223568888876333333 33455432211 1223333333332
Q ss_pred hccCcEEEEEccCCC
Q 046470 251 LSRKEFVLLLDDIWK 265 (888)
Q Consensus 251 l~~k~~LlVlDdv~~ 265 (888)
+.+.-+||+|.+..
T Consensus 156 -~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 -ELKPDLVIIDSIQT 169 (372)
T ss_pred -hcCCcEEEEcchHH
Confidence 24667889998743
No 273
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.93 E-value=0.0092 Score=66.70 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=40.8
Q ss_pred cccchHHHHHHHHHHhhc----CCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCITD----QDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+++|.++.+++|++.|.. -+...+++.++|++|+||||||+.+.+..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 479999999999999932 23566899999999999999999999876
No 274
>PRK09354 recA recombinase A; Provisional
Probab=95.91 E-value=0.053 Score=57.83 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=59.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhh---hcCCCHHHHHHHHHHHh
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENW---WKKKSPEEKAVDISSIL 251 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l 251 (888)
+.-+++-|+|++|+||||||..+.... ...-..++||+.. .+-...+++++...+. ....+.++....+...+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 455799999999999999999988776 2345678899887 3444567777664332 12334555555555555
Q ss_pred c-cCcEEEEEccCC
Q 046470 252 S-RKEFVLLLDDIW 264 (888)
Q Consensus 252 ~-~k~~LlVlDdv~ 264 (888)
+ ++.-+||+|-|-
T Consensus 135 ~s~~~~lIVIDSva 148 (349)
T PRK09354 135 RSGAVDLIVVDSVA 148 (349)
T ss_pred hcCCCCEEEEeChh
Confidence 4 456799999885
No 275
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.90 E-value=0.034 Score=51.88 Aligned_cols=106 Identities=22% Similarity=0.355 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcE
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEF 256 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 256 (888)
.-.+++|+|..|.|||||++.+.... ......+|+.-. ..++... +-...+...-.+...+-.++-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~-------~~i~~~~---~lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGST-------VKIGYFE---QLSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCe-------EEEEEEc---cCCHHHHHHHHHHHHHhcCCC
Confidence 34689999999999999999998765 122333443211 0000000 011223333345666667788
Q ss_pred EEEEccCCCccc---hhhhCCCCCCCCCCcEEEEEecchhhhhcc
Q 046470 257 VLLLDDIWKPIN---LKDMGVPLQNLNAGSKIVLTTRSVDVCDQM 298 (888)
Q Consensus 257 LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 298 (888)
++++|+.-..-+ ...+...+... +..||++|.+.+.+...
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~ 133 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV 133 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh
Confidence 999998754322 22222222211 24677888776655443
No 276
>PRK10867 signal recognition particle protein; Provisional
Probab=95.89 E-value=0.05 Score=60.20 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhh-cCCCHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWW-KKKSPEEKAVDIS 248 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 248 (888)
...+|.++|++|+||||.|..++... ..+ .-..+..|+.. +-++..++..+.+-... ...++..+.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l-~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL-KKK-KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHh-cCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 46899999999999999999888776 222 12234445444 11223345554432110 2234455554443
Q ss_pred HHhccCcE-EEEEccCC
Q 046470 249 SILSRKEF-VLLLDDIW 264 (888)
Q Consensus 249 ~~l~~k~~-LlVlDdv~ 264 (888)
+..+.+.| ++|+|-.-
T Consensus 177 ~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 177 EEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 43333334 66666553
No 277
>PRK07667 uridine kinase; Provisional
Probab=95.89 E-value=0.012 Score=58.18 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 164 LYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+.+.+.+....+...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666665544566899999999999999999999876
No 278
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.88 E-value=0.0059 Score=56.92 Aligned_cols=37 Identities=27% Similarity=0.201 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
.+|-+.|.+|.||||||+++.... ...-..+..++..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LDgD 39 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLDGD 39 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEecCc
Confidence 589999999999999999999988 2333456666554
No 279
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.87 E-value=0.067 Score=54.44 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=52.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCC------CEEEEEEec-----chHHHHHHHcCCChh-------hhcC
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHF------DVVIWAAVS-----TLQDDIGKRIGFSEN-------WWKK 237 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f------~~~~wv~~~-----~l~~~i~~~l~~~~~-------~~~~ 237 (888)
..-.++.|+|.+|+|||++|..+.... .... ..++|++.. .-+..+.+..+.... -...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeC
Confidence 345799999999999999999987765 1222 567888876 123333333322110 0122
Q ss_pred CCHHHHHHHHHHHhc----cCcEEEEEccCCC
Q 046470 238 KSPEEKAVDISSILS----RKEFVLLLDDIWK 265 (888)
Q Consensus 238 ~~~~~~~~~l~~~l~----~k~~LlVlDdv~~ 265 (888)
.+.+++...+.+..+ .+.-++|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 345555555555443 3445888888743
No 280
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.15 Score=54.73 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=57.8
Q ss_pred cCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecc-hhhhhccCC--ceeEcCCCChHHHHHHHHHHhhcccCC
Q 046470 253 RKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRS-VDVCDQMDA--EKVEVSCLAHDEAWKLFQKMVERSTLD 327 (888)
Q Consensus 253 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 327 (888)
+++-++|+|+++.. +....+...+..-..++.+|++|.+ ..+..-... ..+.+.+++.++..+.+.+.. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 45568999999864 3445554445444556666655554 555433332 388999999999999887751 1
Q ss_pred CCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 328 SHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 328 ~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
+ + ...++..++|.|..+..+.
T Consensus 206 -~---~--~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 -A---D--ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -C---h--HHHHHHHcCCCHHHHHHHH
Confidence 1 1 2345788999997655443
No 281
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.85 E-value=0.043 Score=51.47 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEE---Eec--chHHHHHHHcC-CC------hhhhcCCCHHH----
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWA---AVS--TLQDDIGKRIG-FS------ENWWKKKSPEE---- 242 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv---~~~--~l~~~i~~~l~-~~------~~~~~~~~~~~---- 242 (888)
..|-|++..|.||||+|....-+.. ...+ .+.++ ... .--..+++.++ +. ...+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGY-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHH
Confidence 5788999999999999998877651 2222 23332 221 11122333331 00 00011111212
Q ss_pred ---HHHHHHHHhcc-CcEEEEEccCCCc-----cchhhhCCCCCCCCCCcEEEEEecch
Q 046470 243 ---KAVDISSILSR-KEFVLLLDDIWKP-----INLKDMGVPLQNLNAGSKIVLTTRSV 292 (888)
Q Consensus 243 ---~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (888)
..+..++.+.. +-=|||||++-.. .+.+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223334433 3459999998543 23344444444455677899999984
No 282
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.01 Score=54.39 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..-|+|.|++|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4568999999999999999999887
No 283
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.79 E-value=0.04 Score=55.33 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=32.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
..-.++.|+|++|+|||++|.++.... ......++|++..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECC
Confidence 345799999999999999999988776 2335678999886
No 284
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.17 Score=58.82 Aligned_cols=174 Identities=17% Similarity=0.172 Sum_probs=97.3
Q ss_pred cccchHHHH---HHHHHHhhcC-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHH
Q 046470 156 TVVGQELLL---YRVWKCITDQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIG 225 (888)
Q Consensus 156 ~~vGr~~~~---~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~ 225 (888)
++.|-++.+ .+++++|..+ ..-++=+.++|++|.|||-||++++-.. .-.| +-++.|+..+.
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVPF---~svSGSEFvE~-- 383 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPF---FSVSGSEFVEM-- 383 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---CCce---eeechHHHHHH--
Confidence 567877654 5555566542 1235678899999999999999998876 2222 12222232221
Q ss_pred HHcCCChhhhcCCCHHHHHHHHH-HHhccCcEEEEEccCCCcc-----------------chhhhCCCCCCCCCCcEEE-
Q 046470 226 KRIGFSENWWKKKSPEEKAVDIS-SILSRKEFVLLLDDIWKPI-----------------NLKDMGVPLQNLNAGSKIV- 286 (888)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~~~~gs~ii- 286 (888)
+.- .. ...+..+. ..-...+..+.+|+++... .+..+...+.....++.||
T Consensus 384 --~~g-------~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~ 453 (774)
T KOG0731|consen 384 --FVG-------VG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIV 453 (774)
T ss_pred --hcc-------cc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEE
Confidence 111 01 11122222 2223567899999986431 1233322222222333233
Q ss_pred -EEecchhhhh----ccCC-c-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 287 -LTTRSVDVCD----QMDA-E-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 287 -vTtR~~~v~~----~~~~-~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
-+|...++.. +.|- + .+.++.=+...-.++|..++...... .+..++.+ |+...-|.+=|.
T Consensus 454 ~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 454 LAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 3555555521 1222 2 77888888888899999888654422 33456666 888888887554
No 285
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.78 E-value=0.053 Score=60.14 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhh-cCCCHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWW-KKKSPEEKAVDIS 248 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 248 (888)
...+|.++|.+|+||||.|..++... .. ..+ .+.-|++. +-+..++.+++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46799999999999999999999877 22 222 34445444 23445566666542211 1223333333333
Q ss_pred HHhccCcEEEEEccCC
Q 046470 249 SILSRKEFVLLLDDIW 264 (888)
Q Consensus 249 ~~l~~k~~LlVlDdv~ 264 (888)
+.+.+. -++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333443 568888774
No 286
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.77 E-value=0.034 Score=56.57 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=32.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
..-.++.|+|.+|+|||++|.+++.... ..-..++|++..
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC
Confidence 3457999999999999999999988762 234678888876
No 287
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.76 E-value=0.075 Score=56.04 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhhh---cCCCHHHHHHHHHHHhc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENWW---KKKSPEEKAVDISSILS 252 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~l~ 252 (888)
.-+++-|+|+.|+||||||..+.... +..-..++||+.. .+-...++.+|...+.. ...+.++....+.+.++
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lir 128 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIR 128 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhh
Confidence 45799999999999999999998876 3345678999998 56666777887755421 23445555565666665
Q ss_pred cC-cEEEEEccCCCc
Q 046470 253 RK-EFVLLLDDIWKP 266 (888)
Q Consensus 253 ~k-~~LlVlDdv~~~ 266 (888)
.. --++|+|-|-..
T Consensus 129 sg~~~lVVvDSv~al 143 (322)
T PF00154_consen 129 SGAVDLVVVDSVAAL 143 (322)
T ss_dssp TTSESEEEEE-CTT-
T ss_pred cccccEEEEecCccc
Confidence 43 458899988654
No 288
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.077 Score=56.99 Aligned_cols=84 Identities=25% Similarity=0.296 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhhcCCCHHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWWKKKSPEEKAVDISS 249 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 249 (888)
..++|+++|++|+||||++..++... . ... ..+..++.. +-+...+..++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcC-CcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 45799999999999999999998876 2 222 234455553 112223334444321 23455666655544
Q ss_pred Hhcc-CcEEEEEccCCC
Q 046470 250 ILSR-KEFVLLLDDIWK 265 (888)
Q Consensus 250 ~l~~-k~~LlVlDdv~~ 265 (888)
.-.. +.=++++|-.-.
T Consensus 315 lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 315 FKEEARVDYILIDTAGK 331 (436)
T ss_pred HHhccCCCEEEEeCccc
Confidence 4322 335778887643
No 289
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.73 E-value=0.0042 Score=36.70 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=7.0
Q ss_pred ccEEEcCCCCCcccChh
Q 046470 550 LRVLSLGSNALSKLPSG 566 (888)
Q Consensus 550 L~~L~Ls~~~i~~lp~~ 566 (888)
|++|||++|+++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 290
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.73 E-value=0.047 Score=57.38 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=45.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhhcCCCHHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWWKKKSPEEKAVDISS 249 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 249 (888)
..++++++|++|+||||++..++... ..+..-..+..|+.. .-+......++.+.. ...+...+...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH
Confidence 45799999999999999999998876 222111245555554 112222333443321 22334444444443
Q ss_pred HhccCcEEEEEccC
Q 046470 250 ILSRKEFVLLLDDI 263 (888)
Q Consensus 250 ~l~~k~~LlVlDdv 263 (888)
. .+ .=+|++|..
T Consensus 270 ~-~~-~d~vliDt~ 281 (282)
T TIGR03499 270 L-RD-KDLILIDTA 281 (282)
T ss_pred c-cC-CCEEEEeCC
Confidence 3 33 357777753
No 291
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.041 Score=62.10 Aligned_cols=157 Identities=18% Similarity=0.132 Sum_probs=86.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHH----HHHHHHhc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKA----VDISSILS 252 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~----~~l~~~l~ 252 (888)
..+-|.|.|+.|+|||+||+++++... +...-.+..|+++.+- ....+..+ ..+.+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~---------------~~~~e~iQk~l~~vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLD---------------GSSLEKIQKFLNNVFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhcc---------------chhHHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999983 5666667777777221 11122222 23344556
Q ss_pred cCcEEEEEccCCCc--------cchhh----hCCCCC-----CCCCCcE--EEEEecchhhh----hccC-Cc-eeEcCC
Q 046470 253 RKEFVLLLDDIWKP--------INLKD----MGVPLQ-----NLNAGSK--IVLTTRSVDVC----DQMD-AE-KVEVSC 307 (888)
Q Consensus 253 ~k~~LlVlDdv~~~--------~~~~~----l~~~l~-----~~~~gs~--iivTtR~~~v~----~~~~-~~-~~~l~~ 307 (888)
..+-+|||||++-. .+|.. +...+. -...+.+ +|.|.....-. .... .. +..+..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 78999999999632 11211 000110 1223444 33344432211 1111 12 667888
Q ss_pred CChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC-ccHHHHH
Q 046470 308 LAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL-PLALKTV 353 (888)
Q Consensus 308 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 353 (888)
+...+-.++++........ ....+...-++.+|+|. |.-+.++
T Consensus 573 p~~~~R~~IL~~~~s~~~~---~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLS---DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHHHhhhh---hhhhHHHHHHHHhcCCccchhHHHH
Confidence 8877777776665443221 11133344478888773 4444444
No 292
>PRK04040 adenylate kinase; Provisional
Probab=95.72 E-value=0.043 Score=53.75 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCC
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGF 230 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~ 230 (888)
.+|+|+|++|+||||+++.+.... . .. .-+++.+++...++...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l-~--~~---~~~~~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL-K--ED---YKIVNFGDVMLEVAKEEGL 48 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh-c--cC---CeEEecchHHHHHHHHcCC
Confidence 589999999999999999998876 1 12 2346667777777777765
No 293
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.70 E-value=0.021 Score=55.11 Aligned_cols=114 Identities=16% Similarity=0.124 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEe---cchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAV---STLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSR 253 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 253 (888)
.-.+++|+|+.|.|||||++.+..-. ......+++.. +-+.+. . .-...+...-.+...+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~q~----~-------~LSgGq~qrv~laral~~ 88 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL----IPNGDNDEWDGITPVYKPQY----I-------DLSGGELQRVAIAAALLR 88 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC----CCCCcEEEECCEEEEEEccc----C-------CCCHHHHHHHHHHHHHhc
Confidence 34689999999999999999998765 12222333221 100000 0 011223334456666777
Q ss_pred CcEEEEEccCCCccc---hhhhCCCCCC--CCCCcEEEEEecchhhhhccCCceeEc
Q 046470 254 KEFVLLLDDIWKPIN---LKDMGVPLQN--LNAGSKIVLTTRSVDVCDQMDAEKVEV 305 (888)
Q Consensus 254 k~~LlVlDdv~~~~~---~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~~~~~~l 305 (888)
++-++++|+--..-+ ...+...+.. ...+..||++|.+...........+.+
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 145 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF 145 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 888999998754322 1111111111 112256777777765544333333333
No 294
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.68 E-value=0.069 Score=54.64 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=54.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHH---HcCCChhhh-----------------
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGK---RIGFSENWW----------------- 235 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~---~l~~~~~~~----------------- 235 (888)
+.-.++.|+|.+|+|||++|.++.... ...-..++|++..+-.+++.+ +++......
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 456799999999999999999986654 123457889988833344433 333221110
Q ss_pred -cCCCHHHHHHHHHHHhcc-CcEEEEEccCC
Q 046470 236 -KKKSPEEKAVDISSILSR-KEFVLLLDDIW 264 (888)
Q Consensus 236 -~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 264 (888)
...+.+++...+.+.+.. +.-++|+|.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 112334566666666653 55688899875
No 295
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.68 E-value=0.03 Score=61.75 Aligned_cols=49 Identities=29% Similarity=0.296 Sum_probs=36.6
Q ss_pred CCcccchHHHHHHHHHHhhc-------C-----C--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 154 DHTVVGQELLLYRVWKCITD-------Q-----D--KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~-------~-----~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+..++|.+..++.+...+.. . + ...+.+.++|++|+|||++|+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999988887655421 0 0 123568999999999999999998765
No 296
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0048 Score=36.43 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=18.2
Q ss_pred CCCEEeccCCcccccCcccccC
Q 046470 572 SLHHLDLSWTEITGLPQELKAL 593 (888)
Q Consensus 572 ~L~~L~L~~~~i~~Lp~~i~~L 593 (888)
+|++|+|++|+++.+|.++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 297
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.67 E-value=0.032 Score=54.68 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHH
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQD 222 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~ 222 (888)
+|.|+|++|+||||+|+.+.... ....++.+++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~--------~~~~is~~d~lr 35 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF--------GFTHLSAGDLLR 35 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc--------CCeEEECChHHH
Confidence 58899999999999999998765 124566654444
No 298
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.67 E-value=0.0097 Score=55.59 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 299
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.65 E-value=0.063 Score=54.26 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
..-.++.|.|.+|+||||+|.+++... ...-..++|++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECC
Confidence 345799999999999999999998776 2233467788665
No 300
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.048 Score=52.70 Aligned_cols=117 Identities=17% Similarity=0.284 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchH----HHHHHHcCCChh--h-hc-------CCCHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQ----DDIGKRIGFSEN--W-WK-------KKSPEE 242 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~----~~i~~~l~~~~~--~-~~-------~~~~~~ 242 (888)
.-.+++|+|+.|.|||||.+.++.-. ......+++.-..+. ......++.... . +. -...+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY----DPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 34689999999999999999998875 122333333222111 111112211000 0 00 011122
Q ss_pred HHHHHHHHhccCcEEEEEccCCCccc---hhhhCCCCCCCCCCcEEEEEecchhhhhc
Q 046470 243 KAVDISSILSRKEFVLLLDDIWKPIN---LKDMGVPLQNLNAGSKIVLTTRSVDVCDQ 297 (888)
Q Consensus 243 ~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 297 (888)
..-.+...+-.++-++++|+-...-| ...+...+.....+..||++|.+.+....
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22345566667788999999764322 22221112111124668888888766654
No 301
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.047 Score=58.00 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH---HHHcCCChhhh---cCCCHHHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI---GKRIGFSENWW---KKKSPEEKAVDISSI 250 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i---~~~l~~~~~~~---~~~~~~~~~~~l~~~ 250 (888)
.-.+|.|-|-+|+|||||..++..+.. +.. .+.+|+..+-..+| ++.++.+.+.. ...+.+.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA--~~~--~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~-- 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLA--KRG--KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE-- 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHH--hcC--cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHH--
Confidence 347899999999999999999999882 122 78888887444444 55666544322 2334444444333
Q ss_pred hccCcEEEEEccCCC
Q 046470 251 LSRKEFVLLLDDIWK 265 (888)
Q Consensus 251 l~~k~~LlVlDdv~~ 265 (888)
+.++-++|+|-+.+
T Consensus 166 -~~~p~lvVIDSIQT 179 (456)
T COG1066 166 -QEKPDLVVIDSIQT 179 (456)
T ss_pred -hcCCCEEEEeccce
Confidence 37889999998864
No 302
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.65 E-value=0.056 Score=53.03 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHHHhhc--CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChh
Q 046470 156 TVVGQELLLYRVWKCITD--QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
.++|.|...+.+++--.. .+....-|.+||.-|.|||.|++++.+.. ....-.. |.|.
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~---~~~glrL--VEV~--------------- 120 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY---ADEGLRL--VEVD--------------- 120 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH---HhcCCeE--EEEc---------------
Confidence 578988888777754432 12344568899999999999999999987 2332222 2222
Q ss_pred hhcCCCHHHHHHHHHHHh--ccCcEEEEEccCCCc---cchhhhCCCCC
Q 046470 234 WWKKKSPEEKAVDISSIL--SRKEFVLLLDDIWKP---INLKDMGVPLQ 277 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~---~~~~~l~~~l~ 277 (888)
..++..+ ..|.+.| ...||.|+.||+.=+ .....++..+.
T Consensus 121 ---k~dl~~L-p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 121 ---KEDLATL-PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred ---HHHHhhH-HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 1111111 1233444 357999999999532 34555555553
No 303
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.063 Score=51.96 Aligned_cols=120 Identities=18% Similarity=0.311 Sum_probs=63.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchH---HHHHHHcCCChh---hhc---------CCCHHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQ---DDIGKRIGFSEN---WWK---------KKSPEE 242 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~---~~i~~~l~~~~~---~~~---------~~~~~~ 242 (888)
-.+++|+|..|.|||||++.++... ......+++.-..+. ..+...++...+ .+. -...+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 4689999999999999999998765 122334443221110 111111111000 001 111222
Q ss_pred HHHHHHHHhccCcEEEEEccCCCccc---hhhhCCCCCC-CCCCcEEEEEecchhhhhccCCc
Q 046470 243 KAVDISSILSRKEFVLLLDDIWKPIN---LKDMGVPLQN-LNAGSKIVLTTRSVDVCDQMDAE 301 (888)
Q Consensus 243 ~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~ 301 (888)
..-.+...+..++-++++|+.-..-| ...+...+.. ...|..||++|.+..........
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~ 164 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 33356667778889999999865422 1122112211 12366788888887665544333
No 304
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.058 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|..|.|||||++.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34689999999999999999987654
No 305
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.64 E-value=0.025 Score=65.61 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=45.8
Q ss_pred CCcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecch
Q 046470 154 DHTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTL 220 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l 220 (888)
...++|....++++.+.+..-......|.|+|..|+|||++|+.+++...+.... .+.|+++.+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~p---fv~i~c~~~ 258 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRP---FVKVNCAAL 258 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCC---eEEeecCCC
Confidence 4578999999999988886533344567899999999999999999875222223 345555533
No 306
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.62 E-value=0.035 Score=53.83 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++.++|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 307
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.60 E-value=0.06 Score=61.92 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=47.9
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
..++|+...++++.+.+..-.....-|.|+|..|+|||++|+.+++...+.. ...+.|+++.+-..
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~---~p~v~v~c~~~~~~ 252 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRAD---KPLVYLNCAALPES 252 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCC---CCeEEEEcccCChH
Confidence 4689999999999888876444456788999999999999999998752222 23455565544333
No 308
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.60 E-value=0.038 Score=54.98 Aligned_cols=26 Identities=38% Similarity=0.601 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999988764
No 309
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.055 Score=57.84 Aligned_cols=153 Identities=15% Similarity=0.086 Sum_probs=76.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccccc--------------------CCCCEEEEEEecchHHHHHHHcCCChhhhc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ--------------------HHFDVVIWAAVSTLQDDIGKRIGFSENWWK 236 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~ 236 (888)
-...+.++|+.|+||||+|+.+.....-.. .|-|.+ ++.-.. .-...+....
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~-~~~p~~-------~~~~~g~~~~ 91 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFY-EITPLS-------DEPENGRKLL 91 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-EEeccc-------ccccccccCC
Confidence 345788999999999999999988751100 011111 110000 0000000000
Q ss_pred CCCHHHHHHHHHHHhc-----cCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecch-hhhhccCCc--eeEcC
Q 046470 237 KKSPEEKAVDISSILS-----RKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRSV-DVCDQMDAE--KVEVS 306 (888)
Q Consensus 237 ~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~--~~~l~ 306 (888)
.-..+++.+ +.+.+. +++-++|+|++.... ....+...+.....+..+|++|.+. .+....... .+.+.
T Consensus 92 ~I~id~iR~-l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~ 170 (325)
T PRK08699 92 QIKIDAVRE-IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLP 170 (325)
T ss_pred CcCHHHHHH-HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCC
Confidence 112333333 333332 344456678886532 2222222222222345566666664 444333333 88999
Q ss_pred CCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccH
Q 046470 307 CLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLA 349 (888)
Q Consensus 307 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 349 (888)
+++.+++.+.+.+.. . +. .. ..+..++|.|+.
T Consensus 171 ~~~~~~~~~~L~~~~---~---~~--~~---~~l~~~~g~p~~ 202 (325)
T PRK08699 171 APSHEEALAYLRERG---V---AE--PE---ERLAFHSGAPLF 202 (325)
T ss_pred CCCHHHHHHHHHhcC---C---Cc--HH---HHHHHhCCChhh
Confidence 999999998886541 1 11 11 123568999954
No 310
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.16 Score=56.46 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=86.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccC
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRK 254 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k 254 (888)
...-|.+||++|.|||-||++|+|.. +-.| ++|. +++... -+.++..+.+.+++.-..-
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGPELlNkY-----------VGESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGPELLNKY-----------VGESERAVRQVFQRARASA 604 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCHHHHHHH-----------hhhHHHHHHHHHHHhhcCC
Confidence 35568899999999999999999987 4454 3333 444332 2234444445555555677
Q ss_pred cEEEEEccCCCc-------cc------hhhhCCCCCC--CCCCcEEEEEecchhhhh----ccCC-c-eeEcCCCChHHH
Q 046470 255 EFVLLLDDIWKP-------IN------LKDMGVPLQN--LNAGSKIVLTTRSVDVCD----QMDA-E-KVEVSCLAHDEA 313 (888)
Q Consensus 255 ~~LlVlDdv~~~-------~~------~~~l~~~l~~--~~~gs~iivTtR~~~v~~----~~~~-~-~~~l~~L~~~~a 313 (888)
+++|++|.++.. .. ...+...+.. ...|--||-.|-..++.. +.|- + .+-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999999742 11 1222222221 223555665555444421 1222 2 667777788888
Q ss_pred HHHHHHHhhcc--cCCCCCChHHHHHHHHHHhCCCc
Q 046470 314 WKLFQKMVERS--TLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 314 ~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
.++++...... ....+.+++++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888887632 22233445555542 3455543
No 311
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.59 E-value=0.3 Score=53.76 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.++|+.|+||||++..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998766
No 312
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.57 E-value=0.035 Score=54.44 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec---chHHHH--HHHcCCChhhhcCCCHHHHHHHHHHH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS---TLQDDI--GKRIGFSENWWKKKSPEEKAVDISSI 250 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~---~l~~~i--~~~l~~~~~~~~~~~~~~~~~~l~~~ 250 (888)
..+.+|+|.|.+|.||||+|+.++..+ +.+. +.-++-. .-.... .......-+.....+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~--~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQL---GVEK--VVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHh---CcCc--ceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 345799999999999999999999988 3232 1112211 111111 11111111112445666677788888
Q ss_pred hccCc
Q 046470 251 LSRKE 255 (888)
Q Consensus 251 l~~k~ 255 (888)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 313
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.16 Score=58.10 Aligned_cols=93 Identities=24% Similarity=0.215 Sum_probs=65.0
Q ss_pred CcccchHHHHHHHHHHhhc----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHH
Q 046470 155 HTVVGQELLLYRVWKCITD----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQD 222 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~ 222 (888)
+++=|.++.+.+|.+-+.- +-....=|..+|++|.|||-+|++|+-.. . .-+++|. ++++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGPELLN 743 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGPELLN 743 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCHHHHH
Confidence 3556888888888877642 11235578899999999999999998876 1 3345554 5554
Q ss_pred HHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCc
Q 046470 223 DIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKP 266 (888)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 266 (888)
.. -+.+++.+...+.+.-..++++|++|.+++.
T Consensus 744 MY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 744 MY-----------VGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HH-----------hcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 32 2335556666666666789999999999863
No 314
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.57 E-value=0.032 Score=63.15 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=44.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhc---
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILS--- 252 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--- 252 (888)
+.-++..++|++|+||||||.-+++.. .|. ++=|.+| ++.+...+..+|...++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----GYs-VvEINAS-----------------DeRt~~~v~~kI~~avq~~s 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----GYS-VVEINAS-----------------DERTAPMVKEKIENAVQNHS 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----Cce-EEEeccc-----------------ccccHHHHHHHHHHHHhhcc
Confidence 456899999999999999999997764 232 3333333 23333334444444433
Q ss_pred -----cCcEEEEEccCCCc
Q 046470 253 -----RKEFVLLLDDIWKP 266 (888)
Q Consensus 253 -----~k~~LlVlDdv~~~ 266 (888)
+++.-||+|.++..
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 46677999999864
No 315
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.55 E-value=0.065 Score=50.94 Aligned_cols=114 Identities=19% Similarity=0.314 Sum_probs=63.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecch----HHHHHHHcCCChhhhcCCCHHHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTL----QDDIGKRIGFSENWWKKKSPEEKAVDISSILSR 253 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l----~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 253 (888)
-.+++|+|..|.|||||++.+.... ......+++....+ .......++... +-...+...-.+...+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~---qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEELRRRIGYVP---QLSGGQRQRVALARALLL 97 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHHHhceEEEe---eCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999998865 23344555543321 112222222111 112223344446666666
Q ss_pred CcEEEEEccCCCccc---hhhhCCCCCC-CCCCcEEEEEecchhhhhcc
Q 046470 254 KEFVLLLDDIWKPIN---LKDMGVPLQN-LNAGSKIVLTTRSVDVCDQM 298 (888)
Q Consensus 254 k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~ 298 (888)
.+-++++|+....-| ...+...+.. ...+..++++|.+.+.....
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 788999999864322 2222111211 11246688888876665544
No 316
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.55 E-value=0.078 Score=54.33 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccC----CCCEEEEEEec
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQH----HFDVVIWAAVS 218 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~ 218 (888)
..-.++.|+|.+|+|||++|..++... .... ....++|++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCC
Confidence 345799999999999999999997553 1111 13678899876
No 317
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.54 E-value=0.033 Score=53.20 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
++.|+|.+|+||||++..+.... ...-..++|++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECC
Confidence 36899999999999999998876 2345677888877
No 318
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.54 E-value=0.051 Score=56.11 Aligned_cols=88 Identities=23% Similarity=0.213 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccc---ccCCCCEEEEEEec-----chHHHHHHHcCCChhh-------hcCCCHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCH---EQHHFDVVIWAAVS-----TLQDDIGKRIGFSENW-------WKKKSPE 241 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~-----~l~~~i~~~l~~~~~~-------~~~~~~~ 241 (888)
.-.+.=|+|.+|+|||.|+..++-.... ..+.-..++|++.. +-+.+|+++.+...+. ....+.+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHH
Confidence 3469999999999999999887654311 12234578999876 4455677766543321 1223334
Q ss_pred HHHHHH---HHHhc-cCcEEEEEccCC
Q 046470 242 EKAVDI---SSILS-RKEFVLLLDDIW 264 (888)
Q Consensus 242 ~~~~~l---~~~l~-~k~~LlVlDdv~ 264 (888)
++...+ ...+. .+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 433333 33332 344589999874
No 319
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.097 Score=57.09 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccccc-CCCCEEEEEEec-------chHHHHHHHcCCChhhhcCCCHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ-HHFDVVIWAAVS-------TLQDDIGKRIGFSENWWKKKSPEEKAVDIS 248 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 248 (888)
..++|.++|+.|+||||.+..++....... .+-..+..+++. .-++..++.++.+-. ...+...+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999987762111 122345556554 224445555655431 2334444444444
Q ss_pred HHhccCcEEEEEccCCC
Q 046470 249 SILSRKEFVLLLDDIWK 265 (888)
Q Consensus 249 ~~l~~k~~LlVlDdv~~ 265 (888)
+. .+.-++++|....
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 43 3456888998753
No 320
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.50 E-value=0.041 Score=53.44 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.|+|++|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999886
No 321
>PRK14974 cell division protein FtsY; Provisional
Probab=95.47 E-value=0.11 Score=55.67 Aligned_cols=86 Identities=23% Similarity=0.277 Sum_probs=47.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhh-hcCCCHHHHH-HHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENW-WKKKSPEEKA-VDI 247 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~-~~~~~~~~~~-~~l 247 (888)
+..+|.++|++|+||||++..++... . ...+ .++.+... .-++..+..++.+... ....+....+ ..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46899999999999999998888776 2 2223 33344433 2234455666643211 1223333332 222
Q ss_pred HHHhccCcEEEEEccCCC
Q 046470 248 SSILSRKEFVLLLDDIWK 265 (888)
Q Consensus 248 ~~~l~~k~~LlVlDdv~~ 265 (888)
........=++++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222222233889998754
No 322
>PRK06547 hypothetical protein; Provisional
Probab=95.47 E-value=0.021 Score=54.98 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|.|++|+||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 667899999999999999999998765
No 323
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.47 E-value=0.057 Score=58.49 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=37.7
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|-+....++..+..........+.++|++|+||||+|..+.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 35777888888888887543334459999999999999999999876
No 324
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.44 E-value=0.04 Score=53.35 Aligned_cols=115 Identities=12% Similarity=0.235 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecch----HHHHHHHcCCChhh---hc-------CCCHHHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTL----QDDIGKRIGFSENW---WK-------KKSPEEK 243 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l----~~~i~~~l~~~~~~---~~-------~~~~~~~ 243 (888)
-.+++|+|..|.|||||++.+.... ......+++.-..+ ...+...++..... +. -...+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL----RPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc----CCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHH
Confidence 4589999999999999999998765 12223333322111 11122222111000 00 1112223
Q ss_pred HHHHHHHhccCcEEEEEccCCCccc---hhhhCCCCCC-CCCCcEEEEEecchhhhh
Q 046470 244 AVDISSILSRKEFVLLLDDIWKPIN---LKDMGVPLQN-LNAGSKIVLTTRSVDVCD 296 (888)
Q Consensus 244 ~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 296 (888)
.-.+...+-.++-++++|+....-| ...+...+.. ...|..||++|.+.+...
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3345566667778999999865322 1122111211 123667888888776654
No 325
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.034 Score=54.10 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 326
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.43 E-value=0.047 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 327
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.39 E-value=0.056 Score=53.11 Aligned_cols=35 Identities=23% Similarity=0.114 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 181 IGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
+.|.|++|+|||++|.++..... ..-..++|++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECC
Confidence 67999999999999999877652 223457888877
No 328
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.39 E-value=0.012 Score=53.76 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 046470 181 IGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (888)
|.|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 329
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.052 Score=58.67 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhhcCCCHHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWWKKKSPEEKAVDISS 249 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 249 (888)
.-.++.++|+.|+||||++.++..... .+.....+..++.. +-+....+.++.+.. ...+..++...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l~- 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLALA- 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHHH-
Confidence 347999999999999999999988751 11112345555544 234444556665432 1222223333332
Q ss_pred HhccCcEEEEEccCC
Q 046470 250 ILSRKEFVLLLDDIW 264 (888)
Q Consensus 250 ~l~~k~~LlVlDdv~ 264 (888)
.+.++ -++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34444 556689875
No 330
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.013 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.|.+.|.+|+||||+|+++....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 567889999999999999998877
No 331
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.38 E-value=0.057 Score=60.57 Aligned_cols=82 Identities=22% Similarity=0.309 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH---HHHcCCChhhh---cCCCHHHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI---GKRIGFSENWW---KKKSPEEKAVDISSI 250 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i---~~~l~~~~~~~---~~~~~~~~~~~l~~~ 250 (888)
.-.++.|.|.+|+|||||+.++..... ..-..++|++..+-..++ ++.++...+.. ...+.+++...+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~-- 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIE-- 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH--
Confidence 456999999999999999999988762 223467888877444444 34454422111 1223333333332
Q ss_pred hccCcEEEEEccCC
Q 046470 251 LSRKEFVLLLDDIW 264 (888)
Q Consensus 251 l~~k~~LlVlDdv~ 264 (888)
+.+.-++|+|.+.
T Consensus 154 -~~~~~lVVIDSIq 166 (446)
T PRK11823 154 -EEKPDLVVIDSIQ 166 (446)
T ss_pred -hhCCCEEEEechh
Confidence 2355678888764
No 332
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.34 E-value=0.13 Score=52.37 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
..-.++.|.|.+|+||||+|.++..... ..-..++|++..
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e 57 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTE 57 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEcc
Confidence 3457999999999999999998765541 234577888876
No 333
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.33 E-value=0.14 Score=53.45 Aligned_cols=86 Identities=24% Similarity=0.295 Sum_probs=48.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhh-hcCCCHHHH-HHH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENW-WKKKSPEEK-AVD 246 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 246 (888)
...++|.++|++|+||||++..++... . ..-..+.+++.. +-+...++..+.+... ....+.... ...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 456899999999999999999998776 2 222356666654 1122234444432110 012233332 233
Q ss_pred HHHHhccCcEEEEEccCC
Q 046470 247 ISSILSRKEFVLLLDDIW 264 (888)
Q Consensus 247 l~~~l~~k~~LlVlDdv~ 264 (888)
+.....+..-++|+|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444444445678888764
No 334
>PRK04328 hypothetical protein; Provisional
Probab=95.33 E-value=0.1 Score=53.72 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
+.-.++.|.|.+|+|||+||.++.... ...-..++|++..
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~e 60 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALE 60 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEee
Confidence 345799999999999999999976654 1234567888886
No 335
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.31 E-value=0.053 Score=52.80 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchH---HHHHHHcCCChhh------------hc-CCCHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQ---DDIGKRIGFSENW------------WK-KKSPE 241 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~---~~i~~~l~~~~~~------------~~-~~~~~ 241 (888)
-.+++|.|..|.|||||++.+..... .-...+++.-..+. ..+...++...+. .. -...+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 45899999999999999999987651 12233343322221 1112222110000 01 11122
Q ss_pred HHHHHHHHHhccCcEEEEEccCCCccc---hhhhCCCCCCCCCCcEEEEEecchhhhh
Q 046470 242 EKAVDISSILSRKEFVLLLDDIWKPIN---LKDMGVPLQNLNAGSKIVLTTRSVDVCD 296 (888)
Q Consensus 242 ~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtR~~~v~~ 296 (888)
...-.+...+-.++-++++|+....-+ .+.+...+.....+..||++|.+.+...
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 233345566667888999999865422 1111111211123567888888876654
No 336
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.29 E-value=0.021 Score=59.16 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.|.|.|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999987
No 337
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.29 E-value=0.032 Score=50.60 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 162 LLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 162 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++.+++.+.|...-..-.+|.+.|.-|+||||+++.+....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555555554422334689999999999999999999886
No 338
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.039 Score=49.76 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCCh-hhhcCCCHHHHHHHHHHHhccC
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSE-NWWKKKSPEEKAVDISSILSRK 254 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~k 254 (888)
.+-|.|.|.+|+||||+|.+++... . .-|+++|++.++=--.-+... ......+.+.+.+.|...+.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcC
Confidence 4568999999999999999998654 2 347788854432111111111 1123456667777777666543
No 339
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.075 Score=63.04 Aligned_cols=104 Identities=24% Similarity=0.342 Sum_probs=72.0
Q ss_pred CcccchHHHHHHHHHHhhcC-----C-CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHc
Q 046470 155 HTVVGQELLLYRVWKCITDQ-----D-KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRI 228 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l 228 (888)
..++|.++.+..|.+.+... + .....+.+.|+.|+|||.||++++... -+..+..+-++.+...+ +.+..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~e-vskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQE-VSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhh-hhhcc
Confidence 35789999999998888642 1 145688899999999999999998876 55666777777776555 44444
Q ss_pred CCChhhhcCCCHHHHHHHHHHHhccCcE-EEEEccCCCc
Q 046470 229 GFSENWWKKKSPEEKAVDISSILSRKEF-VLLLDDIWKP 266 (888)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 266 (888)
+.+. .+.+. +....|.+.++.++| +|+||||+..
T Consensus 638 gsp~-gyvG~---e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 638 GSPP-GYVGK---EEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred CCCc-ccccc---hhHHHHHHHHhcCCceEEEEechhhc
Confidence 4322 11121 223367777877776 7788999864
No 340
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.25 E-value=0.026 Score=51.53 Aligned_cols=99 Identities=15% Similarity=0.301 Sum_probs=32.1
Q ss_pred CCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEEeccCCcccccCc-ccccCCccceec
Q 046470 523 SPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHLDLSWTEITGLPQ-ELKALEKLRYLN 600 (888)
Q Consensus 523 ~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~ 600 (888)
+.+|+.+.+.. .+..+....|..++.|+.+.+..+ +..++. .+.++.+|+.+.+.. .+..++. .+..+++|+.++
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 33444444332 233444444444444444444442 333322 233443444444433 2223222 233344444444
Q ss_pred cccccccCCccccccCCCCCCcEEecc
Q 046470 601 LEHAYMLSIIPHQLISGFSKLEVLRLL 627 (888)
Q Consensus 601 l~~~~~l~~lp~~~i~~L~~L~~L~l~ 627 (888)
+..+ +..++...+.++ +|+.+.+.
T Consensus 88 ~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 88 IPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cCcc--ccEEchhhhcCC-CceEEEEC
Confidence 4332 133333334444 44444443
No 341
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.24 E-value=0.12 Score=53.66 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=68.0
Q ss_pred HHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-----chHHHHHHHcCC-Chhhh-c
Q 046470 164 LYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-----TLQDDIGKRIGF-SENWW-K 236 (888)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-----~l~~~i~~~l~~-~~~~~-~ 236 (888)
.+.++..+... .+..-++|+|+.|.||||+.+.+..... .....+++.-. +-..+++..... +.... .
T Consensus 98 ~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhHHHHHHHhcccccccccc
Confidence 34444445432 3457899999999999999999988762 22223333211 112344433221 11100 0
Q ss_pred ---CCCHHHHHHHHHHHhc-cCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhh
Q 046470 237 ---KKSPEEKAVDISSILS-RKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDV 294 (888)
Q Consensus 237 ---~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 294 (888)
..+.......+...+. ..+-++++|.+...+.+..+...+ ..|..||+||-+..+
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 0011111222333333 578899999998766665554443 247789999987655
No 342
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.24 E-value=0.087 Score=50.55 Aligned_cols=113 Identities=13% Similarity=0.189 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCC--CC---EEEEEEec------chHHHHHHHcCCChhhhcCCCHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHH--FD---VVIWAAVS------TLQDDIGKRIGFSENWWKKKSPEEKAV 245 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~~------~l~~~i~~~l~~~~~~~~~~~~~~~~~ 245 (888)
.-.+++|+|..|.|||||++.+........+. ++ .+.++.-. .+.+.+... .. ..-...+...-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WD--DVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CC--CCCCHHHHHHH
Confidence 34689999999999999999998875211111 11 11111100 222222210 00 02223334444
Q ss_pred HHHHHhccCcEEEEEccCCCccc---hhhhCCCCCCCCCCcEEEEEecchhhhh
Q 046470 246 DISSILSRKEFVLLLDDIWKPIN---LKDMGVPLQNLNAGSKIVLTTRSVDVCD 296 (888)
Q Consensus 246 ~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtR~~~v~~ 296 (888)
.+...+-.++-++++|+--..-+ ...+...+... +..||++|.+.....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 56666777888899998754322 22221222211 356777777766543
No 343
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.23 E-value=0.028 Score=62.13 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++||++.++.+...+..+ .-|.+.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHh
Confidence 45899999999998888652 348899999999999999999876
No 344
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.22 E-value=0.028 Score=57.24 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+...+|+|.|+.|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998876
No 345
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.21 E-value=0.057 Score=59.26 Aligned_cols=49 Identities=27% Similarity=0.253 Sum_probs=37.1
Q ss_pred CCcccchHHHHHHHHHHhh-------c--CC---C----CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 154 DHTVVGQELLLYRVWKCIT-------D--QD---K----NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~-------~--~~---~----~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+..++|.+..++.+...+. . .. + ....|.++|++|+|||++|+.+....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4578999999988876551 1 00 1 13579999999999999999998765
No 346
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.21 E-value=0.06 Score=51.53 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=41.6
Q ss_pred ccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 157 VVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
+||....++++.+.+..-.....-|.|+|..|+||+.+|+.+++.- .+.-...+-|+++.+-.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~~~~~ 64 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAALPEE 64 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTTS-HH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhhhhcc
Confidence 4788888888888776532333567799999999999999999975 222334455666644433
No 347
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.17 E-value=0.016 Score=57.40 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
||+|.|++|+||||+|+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999987
No 348
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.17 E-value=0.19 Score=57.40 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|....++++.+.+..-......|.|.|..|+||+++|+.+++.-
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 348999988888888775432344578899999999999999999764
No 349
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.16 E-value=0.085 Score=58.35 Aligned_cols=86 Identities=22% Similarity=0.282 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhh-cCCCHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWW-KKKSPEEKAVDIS 248 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 248 (888)
...++.++|.+|+||||.|..++... ..+.. ..+.-|+.. +-+...+...+.+.... ...++.++.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 46799999999999999999988775 11122 234444443 11223344455432111 2234545544444
Q ss_pred HHhccCcE-EEEEccCC
Q 046470 249 SILSRKEF-VLLLDDIW 264 (888)
Q Consensus 249 ~~l~~k~~-LlVlDdv~ 264 (888)
+.+..+.| ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44444445 77888764
No 350
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.15 E-value=0.061 Score=59.05 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhccCcEEEEEccCCCccchhhh---CCCCCCCCCCcEEEEEecchhhhhccCCceeEc
Q 046470 241 EEKAVDISSILSRKEFVLLLDDIWKPINLKDM---GVPLQNLNAGSKIVLTTRSVDVCDQMDAEKVEV 305 (888)
Q Consensus 241 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~l 305 (888)
..+...+.+.|-.++.||.||+-.+.-|++.+ -..|.....+ .+||++|+++......+.++++
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l 292 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHL 292 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhhee
Confidence 44455566666678999999998765443322 1222222222 6899999988766666554443
No 351
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.14 E-value=0.017 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.14 E-value=0.069 Score=51.55 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=62.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccc--cC---CCC--EEEEEEecchHHHHHHHcCCChh----hhcCCC-HHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHE--QH---HFD--VVIWAAVSTLQDDIGKRIGFSEN----WWKKKS-PEEKA 244 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~~~l~~~i~~~l~~~~~----~~~~~~-~~~~~ 244 (888)
.-.+++|+|+.|.|||||.+.+..+.-.+ .. .|. .+.|+ .+ .+.+..+++... .....+ .+...
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--LQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--HHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 34689999999999999999986431011 11 111 12332 22 456666665321 011111 22333
Q ss_pred HHHHHHhccC--cEEEEEccCCCccc---hhhhCCCCCC-CCCCcEEEEEecchhhhh
Q 046470 245 VDISSILSRK--EFVLLLDDIWKPIN---LKDMGVPLQN-LNAGSKIVLTTRSVDVCD 296 (888)
Q Consensus 245 ~~l~~~l~~k--~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 296 (888)
-.+...+-.+ +-++++|+.-..-+ ...+...+.. ...|..||++|.+.+...
T Consensus 96 l~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 96 VKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3455566667 78889998754322 2222222211 124667888888876654
No 353
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.3 Score=52.90 Aligned_cols=150 Identities=17% Similarity=0.237 Sum_probs=85.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhc--cCc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISSILS--RKE 255 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~ 255 (888)
.+-..++|++|.|||+++.++++.. .||... +.+. ...+.. .++..|. ..+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd--------------LeLt----~v~~n~----dLr~LL~~t~~k 287 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD--------------LELT----EVKLDS----DLRHLLLATPNK 287 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc-----CCceEE--------------eeec----cccCcH----HHHHHHHhCCCC
Confidence 3567899999999999999999886 344331 1111 111111 2344442 356
Q ss_pred EEEEEccCCCccc--------------------hhhhCCCC---CCCCCCcEEEE-Eecchhh-----hhccCCc-eeEc
Q 046470 256 FVLLLDDIWKPIN--------------------LKDMGVPL---QNLNAGSKIVL-TTRSVDV-----CDQMDAE-KVEV 305 (888)
Q Consensus 256 ~LlVlDdv~~~~~--------------------~~~l~~~l---~~~~~gs~iiv-TtR~~~v-----~~~~~~~-~~~l 305 (888)
-+||+.|++-.-+ +..+...+ .....+-|||| ||-..+- .+.-..+ .+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 7888888863211 11121121 11222346665 6665443 2222233 7889
Q ss_pred CCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHH-HhccC
Q 046470 306 SCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGR-AMKSR 360 (888)
Q Consensus 306 ~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~-~l~~~ 360 (888)
.--+.+.-..||.+..+... . ..++.+|.+.-.|.-+.=..++. +|..+
T Consensus 368 gyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 99999999999999987532 1 35666666666666555555554 44443
No 354
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.12 E-value=0.088 Score=59.13 Aligned_cols=84 Identities=23% Similarity=0.275 Sum_probs=49.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHH---HHcCCChhhh---cCCCHHHHHHHHHH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIG---KRIGFSENWW---KKKSPEEKAVDISS 249 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~---~~l~~~~~~~---~~~~~~~~~~~l~~ 249 (888)
..-.++.|.|.+|+|||||+.++..... ..-..++|++..+-.+++. ..++...+.. ...+.+.+...+.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~- 167 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIE- 167 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHH-
Confidence 3457999999999999999999977762 1223578888764444443 3444332211 1223333333322
Q ss_pred HhccCcEEEEEccCCC
Q 046470 250 ILSRKEFVLLLDDIWK 265 (888)
Q Consensus 250 ~l~~k~~LlVlDdv~~ 265 (888)
+.+.-++|+|.+..
T Consensus 168 --~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 --EENPQACVIDSIQT 181 (454)
T ss_pred --hcCCcEEEEecchh
Confidence 23455788887643
No 355
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.11 E-value=0.074 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 356
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.083 Score=53.05 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998764
No 357
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.09 E-value=0.11 Score=52.70 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|.|..|.|||||++.+....
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 358
>PRK08233 hypothetical protein; Provisional
Probab=95.08 E-value=0.019 Score=56.14 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998876
No 359
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.07 E-value=0.14 Score=56.92 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecc-------hHHHHHHHcCCChhhhcCCCHHHHHHHHHHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVST-------LQDDIGKRIGFSENWWKKKSPEEKAVDISSI 250 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-------l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 250 (888)
.+++.++|++|+||||++..++... .....-..+..|+... -+....+.++.+.. ...+..++...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3689999999999999999987766 2012234566666651 12223344444321 22334444444443
Q ss_pred hccCcEEEEEccCC
Q 046470 251 LSRKEFVLLLDDIW 264 (888)
Q Consensus 251 l~~k~~LlVlDdv~ 264 (888)
+. ..=+||+|..-
T Consensus 297 ~~-~~DlVlIDt~G 309 (424)
T PRK05703 297 LR-DCDVILIDTAG 309 (424)
T ss_pred hC-CCCEEEEeCCC
Confidence 22 35678888763
No 360
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.07 E-value=0.093 Score=53.08 Aligned_cols=137 Identities=13% Similarity=0.188 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-----------chHHHHHHHcCCChhhh-----cCCCH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-----------TLQDDIGKRIGFSENWW-----KKKSP 240 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-----------~l~~~i~~~l~~~~~~~-----~~~~~ 240 (888)
+-.+++++|..|.||||+++.+..-. ... ...+++... +-..++++.++...+.. +-...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 44689999999999999999998765 222 233333311 23445556666544211 12222
Q ss_pred HHHHHHHHHHhccCcEEEEEccCCCccch------hhhCCCCCCCCCCcEEEEEecchhhhhccCCc--eeEcCC-CChH
Q 046470 241 EEKAVDISSILSRKEFVLLLDDIWKPINL------KDMGVPLQNLNAGSKIVLTTRSVDVCDQMDAE--KVEVSC-LAHD 311 (888)
Q Consensus 241 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~--~~~l~~-L~~~ 311 (888)
+...-.+.+.|.-++-++|.|+.-+.-+. ..+...+ ....|-..+.-|-+-.|+..+... +..++. ....
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g 192 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIG 192 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEec
Confidence 33334577888899999999987654221 1111111 123466678888888887776665 333332 2333
Q ss_pred HHHHHHH
Q 046470 312 EAWKLFQ 318 (888)
Q Consensus 312 ~a~~Lf~ 318 (888)
...++|.
T Consensus 193 ~~~~~~~ 199 (268)
T COG4608 193 PTEEVFS 199 (268)
T ss_pred CHHHHhh
Confidence 4444554
No 361
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.07 E-value=0.082 Score=53.51 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.++.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998764
No 362
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.06 E-value=0.095 Score=53.75 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc-cccCCCCEEEEEEec-------chHHHHHHHcCCChh-----hhcCCCHHH---
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFC-HEQHHFDVVIWAAVS-------TLQDDIGKRIGFSEN-----WWKKKSPEE--- 242 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~-----~~~~~~~~~--- 242 (888)
.-++|.|..|+|||+|+..+.++.. ..+.+-+.++++-++ ++.+.+...-.+... .........
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 4689999999999999999887751 012335778888777 333333322111100 001111111
Q ss_pred --HHHHHHHHhc---cCcEEEEEccCCCc
Q 046470 243 --KAVDISSILS---RKEFVLLLDDIWKP 266 (888)
Q Consensus 243 --~~~~l~~~l~---~k~~LlVlDdv~~~ 266 (888)
....+.++++ ++++|+++||+...
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 2234566663 68999999999654
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.04 E-value=0.072 Score=60.57 Aligned_cols=128 Identities=18% Similarity=0.219 Sum_probs=69.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCC-----CEEEEEEec--------ch---------------HHHHHHHcC
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHF-----DVVIWAAVS--------TL---------------QDDIGKRIG 229 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-----~~~~wv~~~--------~l---------------~~~i~~~l~ 229 (888)
-..|+|+|+.|+|||||.+.+........+.. -.+.++.-. .+ .+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 35699999999999999999966541111110 111111111 11 122233334
Q ss_pred CChhhh----c-CCCHHHHHHHHHHHhccCcEEEEEccCCCccchh---hhCCCCCCCCCCcEEEEEecchhhhhccCCc
Q 046470 230 FSENWW----K-KKSPEEKAVDISSILSRKEFVLLLDDIWKPINLK---DMGVPLQNLNAGSKIVLTTRSVDVCDQMDAE 301 (888)
Q Consensus 230 ~~~~~~----~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 301 (888)
.+.+.. . -+..+...-.+...+-.++-+||||.-.+.-|.+ .+..++... .|+ ||+.|-++.......+.
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va~~ 505 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVATR 505 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhcce
Confidence 333211 1 1122233334555666788999999887654332 222223221 243 88888888887777666
Q ss_pred eeEcCC
Q 046470 302 KVEVSC 307 (888)
Q Consensus 302 ~~~l~~ 307 (888)
.+.+.+
T Consensus 506 i~~~~~ 511 (530)
T COG0488 506 IWLVED 511 (530)
T ss_pred EEEEcC
Confidence 555553
No 364
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.03 E-value=0.068 Score=58.28 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.||||||+.+.--.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHccc
Confidence 4589999999999999999986543
No 365
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.02 E-value=0.11 Score=55.27 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||.+.+....
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998764
No 366
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.01 E-value=0.047 Score=54.70 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHcCCChhhh-cCCCHHHHHHHHHHHh--c
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRIGFSENWW-KKKSPEEKAVDISSIL--S 252 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l--~ 252 (888)
.+++.|+|+.|.||||+.+.+.... .. .+-...+|..-. ...+++...++...... ...+...-.+++...+ .
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~-~l-a~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~ 106 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIV-FL-AHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLA 106 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH-HH-HhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhC
Confidence 4889999999999999999987432 00 111122222111 23333333333221100 1112222223333332 3
Q ss_pred cCcEEEEEccCCCccch-------hhhCCCCCCC-CCCcEEEEEecchhhhhcc
Q 046470 253 RKEFVLLLDDIWKPINL-------KDMGVPLQNL-NAGSKIVLTTRSVDVCDQM 298 (888)
Q Consensus 253 ~k~~LlVlDdv~~~~~~-------~~l~~~l~~~-~~gs~iivTtR~~~v~~~~ 298 (888)
.++.|++||+.-.-.+. ..+...+... ..+..+|+||-..+++...
T Consensus 107 ~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 107 TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 67899999998653221 1122222222 2345799999998876543
No 367
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.00 E-value=0.09 Score=53.14 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3689999999999999999998764
No 368
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.99 E-value=0.022 Score=57.11 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998875
No 369
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.092 Score=53.16 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998764
No 370
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.98 E-value=0.073 Score=54.76 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|+|||||++.+....
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998765
No 371
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.98 E-value=0.09 Score=53.34 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 372
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.96 E-value=0.22 Score=51.72 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+..+|.|+|.+|+|||||+..+.+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 678999999999999999999998876
No 373
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.097 Score=52.59 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+++|+|+.|.|||||++.++...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998654
No 374
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.93 E-value=0.054 Score=53.97 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.--.|+|+|+.|+|||||.+.+.--.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 375
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.92 E-value=0.11 Score=55.53 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhhcCCCHHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWWKKKSPEEKAVDISS 249 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 249 (888)
..+++.++|+.|+||||++..++... ..+ -..+.+|+.. .-++..+..++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46799999999999999999998766 222 2346666664 223334444554321 23455666555544
Q ss_pred Hhc-cCcEEEEEccCCC
Q 046470 250 ILS-RKEFVLLLDDIWK 265 (888)
Q Consensus 250 ~l~-~k~~LlVlDdv~~ 265 (888)
.-. +..=++++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 321 3446788887643
No 376
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.90 E-value=0.1 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998764
No 377
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.89 E-value=0.075 Score=52.74 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|.|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998875
No 378
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.083 Score=53.18 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 379
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.87 E-value=0.14 Score=51.96 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=37.3
Q ss_pred HHHHHHHHhccCcEEEEEccCCCccch------hhhCCCCCCCCCCcEEEEEecchhhhhccCCcee
Q 046470 243 KAVDISSILSRKEFVLLLDDIWKPINL------KDMGVPLQNLNAGSKIVLTTRSVDVCDQMDAEKV 303 (888)
Q Consensus 243 ~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~ 303 (888)
....+...|.++.=+|+||+--+.-|. -++...+ ....|.-||+++-+-+.|.+.....+
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l-~~~~~~tvv~vlHDlN~A~ryad~~i 210 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL-NREKGLTVVMVLHDLNLAARYADHLI 210 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHH-HHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 334566777788889999987554221 1111112 12457779999999888777666533
No 380
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.87 E-value=0.16 Score=54.64 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccccc---CCCCEEEEEEec-----chHHHHHHHcCC
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ---HHFDVVIWAAVS-----TLQDDIGKRIGF 230 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~-----~l~~~i~~~l~~ 230 (888)
..-.++-|+|++|+|||+++.+++....... ..=..++||+.. +-+.++++.++.
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~ 162 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGL 162 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCC
Confidence 4467899999999999999999986641110 111478999876 234445555554
No 381
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.82 E-value=0.071 Score=59.20 Aligned_cols=87 Identities=24% Similarity=0.433 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChh----hhcCCCH------
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSEN----WWKKKSP------ 240 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~----~~~~~~~------ 240 (888)
-.-++|.|.+|+|||||+.++.+... +.+-+.++++-++ ++.+.+...-.+... ...+.+.
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 35699999999999999999988862 3367888888776 233333322111100 0011111
Q ss_pred HHHHHHHHHHh--c-cCcEEEEEccCCCc
Q 046470 241 EEKAVDISSIL--S-RKEFVLLLDDIWKP 266 (888)
Q Consensus 241 ~~~~~~l~~~l--~-~k~~LlVlDdv~~~ 266 (888)
...+..+.+++ + ++.+||++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 12233466666 3 78999999999643
No 382
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.81 E-value=0.06 Score=54.78 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHH---HcCCChhh-------------hc---
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGK---RIGFSENW-------------WK--- 236 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~---~l~~~~~~-------------~~--- 236 (888)
+.-.++.|.|.+|+|||++|.++..... +..-..++||+...-.+++.+ .++..... ..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 3457999999999999999999765541 111346788988733333333 33322110 01
Q ss_pred --CCCHHHHHHHHHHHhcc-CcEEEEEccCC
Q 046470 237 --KKSPEEKAVDISSILSR-KEFVLLLDDIW 264 (888)
Q Consensus 237 --~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 264 (888)
..+...+...+.+.++. +...+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34667777777777754 45788999864
No 383
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.81 E-value=0.085 Score=51.57 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998765
No 384
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.80 E-value=0.08 Score=53.33 Aligned_cols=79 Identities=15% Similarity=0.024 Sum_probs=44.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChh-------hhcCCCHHHHHHHHHHHhc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSEN-------WWKKKSPEEKAVDISSILS 252 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~-------~~~~~~~~~~~~~l~~~l~ 252 (888)
.|.|.|++|+||||+|+.+.... ....++++++++.....-..... .....+.+.....+.+.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~--------~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~ 73 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY--------GIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLA 73 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh--------CCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence 38899999999999999997765 13455666555543322110000 0012233344555555554
Q ss_pred cC--cEEEEEccCCCc
Q 046470 253 RK--EFVLLLDDIWKP 266 (888)
Q Consensus 253 ~k--~~LlVlDdv~~~ 266 (888)
.. ..-+|||..+..
T Consensus 74 ~~~~~~g~VlDGfPr~ 89 (215)
T PRK00279 74 QPDCKNGFLLDGFPRT 89 (215)
T ss_pred ccCccCCEEEecCCCC
Confidence 32 125789998654
No 385
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.80 E-value=0.12 Score=51.54 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.++.-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998764
No 386
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.78 E-value=0.12 Score=52.55 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.++...
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998764
No 387
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.77 E-value=0.063 Score=53.93 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 163 LLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
...++++.+.....+..+|+|.|++|+|||||.-.+.... ..+++--.++-|+-|
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPS 68 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPS 68 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GG
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCC
Confidence 4456666666555677899999999999999999999888 333333334444433
No 388
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.76 E-value=0.099 Score=52.62 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998764
No 389
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.76 E-value=0.11 Score=59.70 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=44.0
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
..++|....++++.+.+..-...-..|.|+|..|+||+++|+.++..-.+... ..+.++++.+-...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~---pfv~inca~~~~~~ 270 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKK---PFLALNCASIPDDV 270 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCC---CeEEeccccCCHHH
Confidence 46899988888888777532223344789999999999999998765411222 33455555443333
No 390
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.74 E-value=0.13 Score=51.85 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|..|.|||||++.+....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 391
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.73 E-value=0.12 Score=52.98 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998654
No 392
>PTZ00301 uridine kinase; Provisional
Probab=94.72 E-value=0.026 Score=56.09 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|+|.|.+|+||||+|+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 393
>PRK05973 replicative DNA helicase; Provisional
Probab=94.71 E-value=0.22 Score=50.32 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=30.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
..-.++.|.|.+|+|||++|.++..... ..-..+++++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEe
Confidence 3456899999999999999999877652 223467777776
No 394
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.70 E-value=0.017 Score=51.31 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhccccccCCCCE
Q 046470 181 IGLYGIGGVGKTTLLTQVNNNFCHEQHHFDV 211 (888)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~ 211 (888)
|.++|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999887 556643
No 395
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.69 E-value=0.028 Score=56.23 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+...+|+|+|++|+||||||+.+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998875
No 396
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.68 E-value=0.12 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998654
No 397
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.66 E-value=0.14 Score=48.25 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999997764
No 398
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.13 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+....
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998764
No 399
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.65 E-value=0.16 Score=48.36 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=58.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEE--EEEEec--chHHHHHHHcCCCh----h--hhcCCCH------
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVV--IWAAVS--TLQDDIGKRIGFSE----N--WWKKKSP------ 240 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~--~wv~~~--~l~~~i~~~l~~~~----~--~~~~~~~------ 240 (888)
....|-|++..|.||||.|..+.-+.. ...+.+. -|+... .=-..+++.++..- . .+...+.
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 346888999999999999998877751 2222221 122221 00111222221110 0 0111111
Q ss_pred -HHHHHHHHHHhccCc-EEEEEccCCCc-----cchhhhCCCCCCCCCCcEEEEEecch
Q 046470 241 -EEKAVDISSILSRKE-FVLLLDDIWKP-----INLKDMGVPLQNLNAGSKIVLTTRSV 292 (888)
Q Consensus 241 -~~~~~~l~~~l~~k~-~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (888)
.+.....++.+...+ =|+|||.+-.. .+.+++...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 112223344444444 59999998532 23334444444455677899999984
No 400
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.63 E-value=0.025 Score=55.43 Aligned_cols=116 Identities=19% Similarity=0.165 Sum_probs=60.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHcCCChhhh-cCCCHHHHHHHHHHHhcc--C
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRIGFSENWW-KKKSPEEKAVDISSILSR--K 254 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l~~--k 254 (888)
++.|+|+.|.||||+.+.+.-.. ...+-.+.+|.... ...+.+...++..+... ...+...-..++...+.. +
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~--~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~ 78 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV--IMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATE 78 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH--HHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCC
Confidence 47799999999999999988433 11122222222111 22223333333221100 111222333345555554 8
Q ss_pred cEEEEEccCCCccch---h----hhCCCCCCCCCCcEEEEEecchhhhhcc
Q 046470 255 EFVLLLDDIWKPINL---K----DMGVPLQNLNAGSKIVLTTRSVDVCDQM 298 (888)
Q Consensus 255 ~~LlVlDdv~~~~~~---~----~l~~~l~~~~~gs~iivTtR~~~v~~~~ 298 (888)
+-++++|+.-.-.+. . .+...+.. ..+..+|++|...++....
T Consensus 79 ~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 79 NSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 899999998643221 1 11111211 2367899999988776544
No 401
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.62 E-value=0.12 Score=52.87 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4689999999999999999998754
No 402
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.60 E-value=0.03 Score=55.14 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998664
No 403
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.59 E-value=0.072 Score=58.41 Aligned_cols=85 Identities=25% Similarity=0.344 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----chHHHHHHHcCCC---hh----hhcCCCHH----
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS----TLQDDIGKRIGFS---EN----WWKKKSPE---- 241 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----~l~~~i~~~l~~~---~~----~~~~~~~~---- 241 (888)
.-..++|+|..|+|||||++.+.+.. ..+.++.+-++ ++.+-+-..++.. .. ...+.+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 34679999999999999999998654 22455556565 2222222222211 00 00111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEccCCCc
Q 046470 242 --EKAVDISSIL--SRKEFVLLLDDIWKP 266 (888)
Q Consensus 242 --~~~~~l~~~l--~~k~~LlVlDdv~~~ 266 (888)
..+..+.+++ +++.+||++||+-..
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1222355555 588999999999653
No 404
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.59 E-value=0.15 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+....
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999998654
No 405
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.58 E-value=0.16 Score=50.74 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|.|..|.|||||++.+....
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34689999999999999999997654
No 406
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.56 E-value=0.13 Score=53.06 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|..|.|||||++.++...
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 407
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.55 E-value=0.076 Score=47.19 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHhh----cC-CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCIT----DQ-DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~----~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|..-..+.|++.+. .. ....-|++.+|+.|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46777666665555553 32 3456799999999999999999988874
No 408
>PRK03839 putative kinase; Provisional
Probab=94.53 E-value=0.029 Score=54.80 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 409
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.52 E-value=0.053 Score=60.58 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEE-EEec---chHHHHHHHcC---C-Ch---hhhcCCCHHHHHHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIW-AAVS---TLQDDIGKRIG---F-SE---NWWKKKSPEEKAVD 246 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w-v~~~---~l~~~i~~~l~---~-~~---~~~~~~~~~~~~~~ 246 (888)
-.-..|+|++|+|||||++.+.+... ..+-++.++ +-|. .-..++.+.+. + .. ..........+...
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999998762 233344433 3333 22223333331 0 00 00001111223334
Q ss_pred HHHHh--ccCcEEEEEccCCCc
Q 046470 247 ISSIL--SRKEFVLLLDDIWKP 266 (888)
Q Consensus 247 l~~~l--~~k~~LlVlDdv~~~ 266 (888)
+.+++ +++.+||++|++...
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHH
Confidence 55555 688999999998643
No 410
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.50 E-value=0.056 Score=58.59 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHhhcC------------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQ------------DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+++|.++.++.+.-.+... ....+-|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999988887666531 1124678999999999999999998876
No 411
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.48 E-value=0.18 Score=55.48 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=43.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhhcCCCHHHHHHHHHHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWWKKKSPEEKAVDISSI 250 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 250 (888)
..+++++|+.|+||||++..+.... ......+.+..+... +-+...++.++.+.. ...+..++...+. .
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~al~-~ 266 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLMLH-E 266 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHHHH-H
Confidence 4799999999999999999887653 111222334444433 223344555555432 2223333332222 2
Q ss_pred hccCcEEEEEccC
Q 046470 251 LSRKEFVLLLDDI 263 (888)
Q Consensus 251 l~~k~~LlVlDdv 263 (888)
++++ -++++|-.
T Consensus 267 l~~~-d~VLIDTa 278 (420)
T PRK14721 267 LRGK-HMVLIDTV 278 (420)
T ss_pred hcCC-CEEEecCC
Confidence 3333 34666655
No 412
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.48 E-value=0.04 Score=52.72 Aligned_cols=142 Identities=18% Similarity=0.264 Sum_probs=70.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-----chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhcc--
Q 046470 181 IGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-----TLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSR-- 253 (888)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-----~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-- 253 (888)
+.|.|.+|+|||++|.++.... ...++++.-. +..+.|..--......+ ...+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w---~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDEMAERIARHRKRRPAHW---RTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHHHHHHHHHHHHhCCCCc---eEeecHHHHHHHHHhcC
Confidence 6799999999999999986542 1245555444 34444433211111111 112222334444421
Q ss_pred CcEEEEEccCCCc--------c---------chhhhCCCCCCCCCCcEEEEEecchhhhhccCCceeEcCCCChHHHHHH
Q 046470 254 KEFVLLLDDIWKP--------I---------NLKDMGVPLQNLNAGSKIVLTTRSVDVCDQMDAEKVEVSCLAHDEAWKL 316 (888)
Q Consensus 254 k~~LlVlDdv~~~--------~---------~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~l~~L~~~~a~~L 316 (888)
+.-.+++|.+..- . .+..+...+ ...+..+|+||.. +-.+..+.+..-..
T Consensus 73 ~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l--~~~~~~~viVsnE-----------vG~g~vp~~~~~r~ 139 (169)
T cd00544 73 PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAV--RNKPGTLILVSNE-----------VGLGVVPENALGRR 139 (169)
T ss_pred CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHH--HcCCCcEEEEECC-----------cCCCCCCCCHHHHH
Confidence 3347999987321 0 011111112 1234556666542 22445566777778
Q ss_pred HHHHhhcccCCCCCChHHHHHHHHHHhCCCcc
Q 046470 317 FQKMVERSTLDSHASIPELAKTLARECGGLPL 348 (888)
Q Consensus 317 f~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 348 (888)
|...++.-. ..+...+.+++.-..|+|+
T Consensus 140 f~d~lG~ln----q~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 140 FRDELGRLN----QRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHHHHH----HHHHHHCCEEEEEECCcce
Confidence 887776433 2223333333344466665
No 413
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.47 E-value=0.25 Score=54.51 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhh-----cCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEE
Q 046470 161 ELLLYRVWKCIT-----DQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWA 215 (888)
Q Consensus 161 ~~~~~~l~~~L~-----~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 215 (888)
..-++++-.||. ...-+.+++.|.|++|+||||.++.++... .+..+-|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 445677888887 323456799999999999999999988765 34455565
No 414
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.26 Score=48.35 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhccCcEEEEEccCCCccchhhhC------CCCCCCCCCcEEEEEecchhhhhccCCc
Q 046470 241 EEKAVDISSILSRKEFVLLLDDIWKPINLKDMG------VPLQNLNAGSKIVLTTRSVDVCDQMDAE 301 (888)
Q Consensus 241 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~------~~l~~~~~gs~iivTtR~~~v~~~~~~~ 301 (888)
+.....+.+.+--++-+.|||..++--|.+.+. ..+. ..|+-++|.|-.+.++.....+
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCC
Confidence 334445566666678899999998755544332 1222 2366677777778888777655
No 415
>PTZ00494 tuzin-like protein; Provisional
Probab=94.46 E-value=1.2 Score=48.22 Aligned_cols=161 Identities=13% Similarity=0.027 Sum_probs=97.4
Q ss_pred CCcccchHHHHHHHHHHhhcCC-CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec---chHHHHHHHcC
Q 046470 154 DHTVVGQELLLYRVWKCITDQD-KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS---TLQDDIGKRIG 229 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~---~l~~~i~~~l~ 229 (888)
...+|.|+.+-..+.+.|.+-+ ...+++.+.|.-|.||++|.+...... . -..++|++. +-++.|.++++
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~EDtLrsVVKALg 443 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGTEDTLRSVVRALG 443 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCCcchHHHHHHHhC
Confidence 4568999998888888887643 467899999999999999999887665 1 235677776 88999999998
Q ss_pred CChhhhcCCCHHHHHHHHHH---HhccCcEEEEEccCCCccchhhh---CCCCCCCCCCcEEEEEecchhhhhc----cC
Q 046470 230 FSENWWKKKSPEEKAVDISS---ILSRKEFVLLLDDIWKPINLKDM---GVPLQNLNAGSKIVLTTRSVDVCDQ----MD 299 (888)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~---~l~~k~~LlVlDdv~~~~~~~~l---~~~l~~~~~gs~iivTtR~~~v~~~----~~ 299 (888)
.+.-..=..-.+-+.+..+. ...++.=+||+-== +-.++..+ ...|.....-+.|++----+.+.-. ..
T Consensus 444 V~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~LPR 522 (664)
T PTZ00494 444 VSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSRR 522 (664)
T ss_pred CCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccCcc
Confidence 76432112222223332222 23455556665321 11111111 0112223344566664444333211 11
Q ss_pred CceeEcCCCChHHHHHHHHHHh
Q 046470 300 AEKVEVSCLAHDEAWKLFQKMV 321 (888)
Q Consensus 300 ~~~~~l~~L~~~~a~~Lf~~~~ 321 (888)
-+.|.+.+++.++|.+...+..
T Consensus 523 LDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 523 LDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ceeEecCCcCHHHHHHHHhccc
Confidence 2278899999999998877654
No 416
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.45 E-value=0.1 Score=57.59 Aligned_cols=87 Identities=26% Similarity=0.477 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChh----hhcCCCH-H----
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSEN----WWKKKSP-E---- 241 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~----~~~~~~~-~---- 241 (888)
-.-++|.|.+|+|||+|+.++.++. . +.+-+.++++-++ ++.+.+...-.+... ...+.+. .
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 3568999999999999999998875 2 2345788888776 233333322111100 0011111 1
Q ss_pred -HHHHHHHHHhc---cCcEEEEEccCCCc
Q 046470 242 -EKAVDISSILS---RKEFVLLLDDIWKP 266 (888)
Q Consensus 242 -~~~~~l~~~l~---~k~~LlVlDdv~~~ 266 (888)
.....+.++++ ++.+||++||+-..
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 22334667764 58999999999653
No 417
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.44 E-value=0.11 Score=52.74 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=62.5
Q ss_pred CcccchHHHHHHHHHHhhc----C-CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcC
Q 046470 155 HTVVGQELLLYRVWKCITD----Q-DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIG 229 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~ 229 (888)
..++|..-..+.|+..+.+ . ..+.-+++.+|..|+||.-.++.++++..+..-+- .....+.....
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S---------~~V~~fvat~h 152 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS---------PFVHHFVATLH 152 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc---------hhHHHhhhhcc
Confidence 3467777767667666643 2 24567999999999999999999998872221111 22233333444
Q ss_pred CChhhhcCCCHHHHHHHHHHHhc-cCcEEEEEccCCCc
Q 046470 230 FSENWWKKKSPEEKAVDISSILS-RKEFVLLLDDIWKP 266 (888)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~ 266 (888)
.+....-..-.+++...+++.++ -+|-|+|+|+++..
T Consensus 153 FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 153 FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 33221111122344445555443 47999999999864
No 418
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.42 E-value=0.18 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||++.+....
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34689999999999999999998764
No 419
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.41 E-value=0.18 Score=52.22 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998754
No 420
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.41 E-value=0.068 Score=57.96 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=39.1
Q ss_pred CCcccchHHHHHHHHHHhhcC------------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 154 DHTVVGQELLLYRVWKCITDQ------------DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.+++|.+..++.+..++... +...+.|.++|++|+|||++|+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999988887431 0124678999999999999999998876
No 421
>PRK05439 pantothenate kinase; Provisional
Probab=94.39 E-value=0.2 Score=52.80 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998765
No 422
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.38 E-value=0.11 Score=51.44 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCC-------CEEEEEEec
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHF-------DVVIWAAVS 218 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~~ 218 (888)
-.++.|.|++|+||||++..+..........| ..++|++..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E 79 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLE 79 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEecc
Confidence 35889999999999999999988773222222 378888776
No 423
>PRK06217 hypothetical protein; Validated
Probab=94.38 E-value=0.036 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 424
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.37 E-value=0.14 Score=50.10 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|.|.|.+|.||||+|+.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998876
No 425
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.37 E-value=0.063 Score=54.70 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=39.4
Q ss_pred HHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 164 LYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
-.+++..+....++..+|+|.|.||+|||||.-++...+ ...++--.++=|+-|
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPS 90 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPS 90 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCC
Confidence 345666666555778899999999999999999998888 444444444445444
No 426
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.48 Score=46.96 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=40.7
Q ss_pred cccCCCCC--cccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 148 AIELPVDH--TVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 148 ~~~~~~~~--~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+++.|++. ++=|.+..++++++.+.-. -...+-+..+|++|.|||-+|++.+...
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 45556543 4678899999998887321 1235678899999999999999987764
No 427
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.34 E-value=0.24 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|..|.|||||++.+....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccC
Confidence 34689999999999999999998764
No 428
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.34 E-value=0.26 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+..-.
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998764
No 429
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.34 E-value=0.14 Score=52.48 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|..|.|||||.+.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 430
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.33 E-value=0.0075 Score=57.87 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++.|.|.+|+||||+|..+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999997764
No 431
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.32 E-value=0.14 Score=52.22 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 432
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.0043 Score=59.04 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=34.2
Q ss_pred CCCccEEEEecCCCCCCC--chhh-hccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccc
Q 046470 740 FRSLSIVSVENCEKMKDL--TWLV-FVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNL 814 (888)
Q Consensus 740 l~~L~~L~L~~c~~l~~l--~~l~-~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L 814 (888)
++.++.|.+.+|..+.+. ..++ -.++|+.|+|++|+.|++-.- ..+..|++|+.|.|.+++..
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------------~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------------ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------------HHHHHhhhhHHHHhcCchhh
Confidence 555566666666544431 1222 346666666666666655422 24555666666666665543
No 433
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.31 E-value=0.14 Score=52.78 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.++...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998764
No 434
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.30 E-value=0.021 Score=68.24 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=88.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc-ccccCCC-CEEEEEEecchHHHHHHHcCCChhhh-cCCCHHHHHHHHHHHhc-
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF-CHEQHHF-DVVIWAAVSTLQDDIGKRIGFSENWW-KKKSPEEKAVDISSILS- 252 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~-~~~~~~f-~~~~wv~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l~- 252 (888)
+..++.|+|+.|.||||+.+.+.-.. ....+.| .......+ ..+.++...++...... ...+...-...+...+.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHh
Confidence 34789999999999999999987652 0001101 00000000 11122211111110000 00111111122333333
Q ss_pred -cCcEEEEEccCCCccc---hhhh----CCCCCCCCCCcEEEEEecchhhhhccCCc----eeEcCCCChHHHHHHHHHH
Q 046470 253 -RKEFVLLLDDIWKPIN---LKDM----GVPLQNLNAGSKIVLTTRSVDVCDQMDAE----KVEVSCLAHDEAWKLFQKM 320 (888)
Q Consensus 253 -~k~~LlVlDdv~~~~~---~~~l----~~~l~~~~~gs~iivTtR~~~v~~~~~~~----~~~l~~L~~~~a~~Lf~~~ 320 (888)
.++-|+++|+.-.-.+ -..+ ...+. ..|+.+|+||-..++....... ...+. ++. +... |..+
T Consensus 400 ~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Yk 474 (771)
T TIGR01069 400 TTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYK 474 (771)
T ss_pred cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEE
Confidence 4789999999865322 1122 12222 3578899999998775433222 11121 111 1100 1111
Q ss_pred hhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 046470 321 VERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNIGDWKRAIKKIRTS 376 (888)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~ 376 (888)
.-.+. + -..-|-+|++++ |+|-.|.--|..+... ...+...++..+...
T Consensus 475 l~~G~----~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 475 LLKGI----P-GESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLSAL 523 (771)
T ss_pred ECCCC----C-CCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 11111 1 134577788777 8888888888776553 334555555555443
No 435
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.29 E-value=0.034 Score=53.76 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999987
No 436
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.29 E-value=0.072 Score=55.06 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|.++|++|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998876
No 437
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.26 E-value=0.16 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|..|.|||||.+.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999988764
No 438
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.23 E-value=0.29 Score=52.44 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccc---cCCCCEEEEEEec-----chHHHHHHHcCCC
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHE---QHHFDVVIWAAVS-----TLQDDIGKRIGFS 231 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~-----~l~~~i~~~l~~~ 231 (888)
..-.++-|+|.+|+||||++.+++...... ...-..++||+.. +-+.++++.++..
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~ 156 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLD 156 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 345789999999999999999997764110 1112378999876 2344555555543
No 439
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.23 E-value=0.27 Score=57.90 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhhcCCCHHHHHHHHHHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWWKKKSPEEKAVDISSI 250 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 250 (888)
..+|+++|+.|+||||.+.++.... ........+..++.. +-++...+.++.+.. ...+..++...+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~~- 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALAA- 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHHH-
Confidence 4799999999999999999988766 212222345555544 334445555555432 23355555544543
Q ss_pred hccCcEEEEEccCC
Q 046470 251 LSRKEFVLLLDDIW 264 (888)
Q Consensus 251 l~~k~~LlVlDdv~ 264 (888)
++++ =++++|=.-
T Consensus 261 ~~~~-D~VLIDTAG 273 (767)
T PRK14723 261 LGDK-HLVLIDTVG 273 (767)
T ss_pred hcCC-CEEEEeCCC
Confidence 3444 377777664
No 440
>PRK00625 shikimate kinase; Provisional
Probab=94.23 E-value=0.035 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998875
No 441
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.22 E-value=0.22 Score=53.17 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=36.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccc---ccCCCCEEEEEEecc-----hHHHHHHHcCCC
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCH---EQHHFDVVIWAAVST-----LQDDIGKRIGFS 231 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~-----l~~~i~~~l~~~ 231 (888)
..-.++.|+|.+|+||||++..++..... ....-..++|++... -+.++++.++..
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~ 157 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLN 157 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 45689999999999999999988764310 111224678988762 233455555543
No 442
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.22 E-value=0.11 Score=56.42 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=60.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcC-CChhhhcCCCHHHHHHHHHHHhccCcE
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIG-FSENWWKKKSPEEKAVDISSILSRKEF 256 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~-~~~~~~~~~~~~~~~~~l~~~l~~k~~ 256 (888)
...|.|.|+.|.||||+++.+.+.. ..+....++.--..+.-..-.... ..... ...+.......++..|+..+=
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~tiEdp~E~~~~~~~~~i~q~e-vg~~~~~~~~~l~~~lr~~pd 197 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITIEDPIEYVHRNKRSLINQRE-VGLDTLSFANALRAALREDPD 197 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEEcCChhhhccCccceEEccc-cCCCCcCHHHHHHHhhccCCC
Confidence 4789999999999999999988765 233344444432211000000000 00000 111122355667788888999
Q ss_pred EEEEccCCCccchhhhCCCCCCCCCCcEEEEEecch
Q 046470 257 VLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSV 292 (888)
Q Consensus 257 LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (888)
.|++|++.+.+.+...... ...|-.|+.|+-..
T Consensus 198 ~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 198 VILIGEMRDLETVELALTA---AETGHLVFGTLHTN 230 (343)
T ss_pred EEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCC
Confidence 9999999887665532111 22344455555543
No 443
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.21 E-value=0.22 Score=53.37 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=52.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccc---ccCCCCEEEEEEec-----chHHHHHHHcCCChhh-------hcCCCH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCH---EQHHFDVVIWAAVS-----TLQDDIGKRIGFSENW-------WKKKSP 240 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~-----~l~~~i~~~l~~~~~~-------~~~~~~ 240 (888)
..-.+.-|+|.+|+|||+|+..++-.... ....-..++|++.. +-+.++++.++...+. ....+.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCH
Confidence 34578889999999999999988644311 11223578999885 4455677777654321 112233
Q ss_pred HHHHH---HHHHHh-ccCcEEEEEccCC
Q 046470 241 EEKAV---DISSIL-SRKEFVLLLDDIW 264 (888)
Q Consensus 241 ~~~~~---~l~~~l-~~k~~LlVlDdv~ 264 (888)
+++.. .+...+ +.+--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 33322 222233 2344578888774
No 444
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.21 E-value=0.19 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+....
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998764
No 445
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.20 E-value=0.12 Score=48.44 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|-..|.+|.||||+|.+++...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999987
No 446
>PRK01184 hypothetical protein; Provisional
Probab=94.18 E-value=0.15 Score=49.90 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHH
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGK 226 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~ 226 (888)
.+|+|+|++|+||||+|+ +.... + ..+++.+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~-------g-~~~i~~~d~lr~~~~ 40 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM-------G-IPVVVMGDVIREEVK 40 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc-------C-CcEEEhhHHHHHHHH
Confidence 479999999999999987 43332 1 234555666555543
No 447
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.18 E-value=0.032 Score=49.03 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 046470 181 IGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (888)
|-|+|.+|+|||++|+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988876
No 448
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.16 E-value=0.13 Score=56.96 Aligned_cols=87 Identities=24% Similarity=0.447 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChh----hhcCCCHH-----
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSEN----WWKKKSPE----- 241 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~----~~~~~~~~----- 241 (888)
-.-++|.|.+|+|||||+.++..... .++-+.++++-++ ++.+.+...-..... ...+.+..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35699999999999999999877762 1222466777666 233333322111100 00111111
Q ss_pred -HHHHHHHHHh---ccCcEEEEEccCCCc
Q 046470 242 -EKAVDISSIL---SRKEFVLLLDDIWKP 266 (888)
Q Consensus 242 -~~~~~l~~~l---~~k~~LlVlDdv~~~ 266 (888)
.....+.+++ +++.+||++||+...
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 2233466776 678999999999653
No 449
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.15 E-value=0.037 Score=51.59 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 046470 180 IIGLYGIGGVGKTTLLTQVN 199 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~ 199 (888)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 450
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.13 E-value=0.23 Score=51.53 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
.-.++.|.|.+|+|||++|.++..... ..-..+++++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEec
Confidence 457999999999999999999866541 223467777766
No 451
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.12 E-value=0.067 Score=49.46 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEe
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAV 217 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 217 (888)
++|.|+|..|+|||||++.+.+... ++.+...+..+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEc
Confidence 5899999999999999999999982 344444444433
No 452
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.11 E-value=0.18 Score=55.65 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----chHHHHHHHcCCCh---h----hhcCCCH-H---
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS----TLQDDIGKRIGFSE---N----WWKKKSP-E--- 241 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----~l~~~i~~~l~~~~---~----~~~~~~~-~--- 241 (888)
.-..++|+|..|+|||||++.+++.. ..+.++.+-++ ++.+-+.+.++... . ...+.+. .
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 44678999999999999999998765 12445555555 33332322332111 0 0011111 1
Q ss_pred --HHHHHHHHHh--ccCcEEEEEccCCCc
Q 046470 242 --EKAVDISSIL--SRKEFVLLLDDIWKP 266 (888)
Q Consensus 242 --~~~~~l~~~l--~~k~~LlVlDdv~~~ 266 (888)
.....+.+++ +++.+|+++||+-..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1223355665 588999999999653
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.10 E-value=0.23 Score=50.40 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
.-.++.|.|.+|+||||+|.++..... +.. ..+++++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e 61 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQ 61 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCC
Confidence 446999999999999999866655441 122 345666655
No 454
>PRK08149 ATP synthase SpaL; Validated
Probab=94.09 E-value=0.17 Score=55.62 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----ch---HHHHHHHcCCChh----hhcCCCH-----
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS----TL---QDDIGKRIGFSEN----WWKKKSP----- 240 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----~l---~~~i~~~l~~~~~----~~~~~~~----- 240 (888)
+-..++|+|..|+|||||+..+++.. .-+.++...+. ++ .+........... ...+.+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 34679999999999999999998754 22333333333 32 2333322111100 0011111
Q ss_pred -HHHHHHHHHHh--ccCcEEEEEccCCCc
Q 046470 241 -EEKAVDISSIL--SRKEFVLLLDDIWKP 266 (888)
Q Consensus 241 -~~~~~~l~~~l--~~k~~LlVlDdv~~~ 266 (888)
......+.+++ ++|.+||++||+-..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12233455555 589999999999653
No 455
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.06 E-value=0.096 Score=52.54 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=42.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCCh-------hhhcCCCHHHHHHHHHHHhcc
Q 046470 181 IGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSE-------NWWKKKSPEEKAVDISSILSR 253 (888)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~-------~~~~~~~~~~~~~~l~~~l~~ 253 (888)
|.|.|++|+||||+|+.+.... ....++++++++..+..-.... ......+.+.....+.+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~--------g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~ 73 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY--------GLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQ 73 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc--------CCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 7899999999999999997765 1234555555444222110000 000122334445556666644
Q ss_pred C---cEEEEEccCCC
Q 046470 254 K---EFVLLLDDIWK 265 (888)
Q Consensus 254 k---~~LlVlDdv~~ 265 (888)
. ..-+|||....
T Consensus 74 ~~~~~~~~ilDGfPr 88 (210)
T TIGR01351 74 NQDNENGFILDGFPR 88 (210)
T ss_pred CcccCCcEEEeCCCC
Confidence 1 33568898754
No 456
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.17 Score=51.66 Aligned_cols=25 Identities=36% Similarity=0.419 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||.+.++...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998775
No 457
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.05 E-value=0.2 Score=49.88 Aligned_cols=35 Identities=46% Similarity=0.752 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
.-++|.|.+|+|||+|+..+.+.. .-+.++++.++
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iG 50 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIG 50 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEES
T ss_pred CEEEEEcCcccccchhhHHHHhcc-----cccceeeeecc
Confidence 568999999999999999998886 23445777776
No 458
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.03 E-value=0.4 Score=50.97 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=51.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccc---cCCCCEEEEEEec-----chHHHHHHHcCCChhhh-------cCCCH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHE---QHHFDVVIWAAVS-----TLQDDIGKRIGFSENWW-------KKKSP 240 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~-----~l~~~i~~~l~~~~~~~-------~~~~~ 240 (888)
..-+++-|+|++|+|||+++..++-..... ...-..++||+.. +-+.+++++++...+.. ...+.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCH
Confidence 345789999999999999998876433111 1223478999876 33455677776543210 11233
Q ss_pred HHHH---HHHHHHh-ccCcEEEEEccCC
Q 046470 241 EEKA---VDISSIL-SRKEFVLLLDDIW 264 (888)
Q Consensus 241 ~~~~---~~l~~~l-~~k~~LlVlDdv~ 264 (888)
++.. ..+...+ +++--|||+|.+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 3333 2333333 2345578888774
No 459
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.02 E-value=0.034 Score=30.40 Aligned_cols=16 Identities=50% Similarity=0.723 Sum_probs=5.6
Q ss_pred CCCEEeccCCcccccC
Q 046470 572 SLHHLDLSWTEITGLP 587 (888)
Q Consensus 572 ~L~~L~L~~~~i~~Lp 587 (888)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 460
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.26 Score=49.92 Aligned_cols=93 Identities=22% Similarity=0.231 Sum_probs=58.9
Q ss_pred CcccchHHHHHHHHHHhh----------cCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCIT----------DQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.++.|.|..++.+.+... ......+-|.++|++|.||+.||++|+... ..-| +-|+-|++....
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTF---FSvSSSDLvSKW 206 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSSDLVSKW 206 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCce---EEeehHHHHHHH
Confidence 356888888888777653 111235788999999999999999998876 2222 112222433321
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHh-ccCcEEEEEccCCC
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSIL-SRKEFVLLLDDIWK 265 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 265 (888)
.. ..+.++..+.+.- ++|+-+|++|.++.
T Consensus 207 -----------mG-ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 207 -----------MG-ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred -----------hc-cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11 1234444444443 57899999999963
No 461
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.96 E-value=0.003 Score=61.06 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCcccee
Q 046470 520 IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYL 599 (888)
Q Consensus 520 ~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 599 (888)
+..+...++|+++.|.+-.+... |+-++.|..||++.|.|..+|..++.+..++.+++..|..+.+|.+.+.+++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 34456666677766665444443 55566666677777777777777777777777777666666777777777777777
Q ss_pred ccccccc
Q 046470 600 NLEHAYM 606 (888)
Q Consensus 600 ~l~~~~~ 606 (888)
++.++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 7766643
No 462
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.27 Score=50.69 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999864
No 463
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.93 E-value=0.15 Score=56.17 Aligned_cols=87 Identities=23% Similarity=0.423 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChh----hhcCCC-HHH---
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSEN----WWKKKS-PEE--- 242 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~----~~~~~~-~~~--- 242 (888)
-.-++|.|.+|+|||||+.++..+.. .++-+.++++-++ ++.+.+...-..... ...+.+ ...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35689999999999999999887751 2233466777666 333333322111100 001111 111
Q ss_pred --HHHHHHHHh---ccCcEEEEEccCCCc
Q 046470 243 --KAVDISSIL---SRKEFVLLLDDIWKP 266 (888)
Q Consensus 243 --~~~~l~~~l---~~k~~LlVlDdv~~~ 266 (888)
....+.+++ +++.+||++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 233466777 468999999999654
No 464
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.92 E-value=0.22 Score=56.98 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=41.8
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecch
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTL 220 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l 220 (888)
.++|......++.+.+.........+.|.|..|+||+++|+.+.... .......+-++++.+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~---~~~~~~~~~~~c~~~ 196 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS---PRANGPFIALNMAAI 196 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC---CCCCCCeEEEeCCCC
Confidence 47887777777776665432334567899999999999999998875 222233444555533
No 465
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.91 E-value=0.18 Score=54.47 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+..-.
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998765
No 466
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.90 E-value=0.19 Score=51.56 Aligned_cols=53 Identities=30% Similarity=0.481 Sum_probs=34.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCC-------CEEEEEEec-------chHHHHHHHcCCCh
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHF-------DVVIWAAVS-------TLQDDIGKRIGFSE 232 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~~-------~l~~~i~~~l~~~~ 232 (888)
++.|+|.||+||||++...+=....-+.-| ..+++|++. .-++.+..+++++.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 445679999999999987655442223334 367777776 23445666777654
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.90 E-value=0.33 Score=55.40 Aligned_cols=95 Identities=19% Similarity=0.135 Sum_probs=55.9
Q ss_pred HHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHH---HHcCCChhhh--------
Q 046470 167 VWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIG---KRIGFSENWW-------- 235 (888)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~---~~l~~~~~~~-------- 235 (888)
+-+.|..+=..-.++.|.|++|+|||||+.++..... ..-..+++++..+-..+|. +.++.....+
T Consensus 252 lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~ 328 (484)
T TIGR02655 252 LDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKI 328 (484)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEE
Confidence 3333433324567999999999999999999988762 3345678887774333333 3444432110
Q ss_pred -----cCCCHHHHHHHHHHHhcc-CcEEEEEccCC
Q 046470 236 -----KKKSPEEKAVDISSILSR-KEFVLLLDDIW 264 (888)
Q Consensus 236 -----~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 264 (888)
.....++....+.+.+.. +.-.+|+|.+.
T Consensus 329 ~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 329 ICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred EEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 112234555555555543 44567777663
No 468
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.89 E-value=0.12 Score=53.68 Aligned_cols=57 Identities=26% Similarity=0.263 Sum_probs=41.5
Q ss_pred CCCcccchHHHHHH---HHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCC
Q 046470 153 VDHTVVGQELLLYR---VWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD 210 (888)
Q Consensus 153 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~ 210 (888)
..+-+||..+..+. ++++..+..-.-+.|.|+|++|.|||+||..+.+.. -..-+|.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCce
Confidence 45678998765543 556665533345789999999999999999999987 3344553
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.89 E-value=0.04 Score=54.73 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|+|.|+.|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997764
No 470
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.88 E-value=0.051 Score=52.67 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...|.++|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 471
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.24 Score=50.41 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+....
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3579999999999999999998765
No 472
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.87 E-value=0.078 Score=55.40 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999998876554
No 473
>PRK13409 putative ATPase RIL; Provisional
Probab=93.86 E-value=0.2 Score=58.58 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|+|||||++.++...
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998764
No 474
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.86 E-value=0.042 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 475
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.85 E-value=0.28 Score=52.35 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 476
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.83 E-value=0.0032 Score=60.88 Aligned_cols=85 Identities=25% Similarity=0.186 Sum_probs=47.9
Q ss_pred HhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcE
Q 046470 544 FQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEV 623 (888)
Q Consensus 544 ~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 623 (888)
+..++..++||++.|.+-.+-..++.++.|..|+++.|.+.-+|.+++.+..+.++++..|. .+..|.. .++++.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcch
Confidence 44455555666666655555555555555556666655555566666666666666555553 2555554 555555555
Q ss_pred EeccCCC
Q 046470 624 LRLLGCG 630 (888)
Q Consensus 624 L~l~~~~ 630 (888)
++.-++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 5555444
No 477
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.83 E-value=0.04 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 478
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.83 E-value=0.23 Score=52.18 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|..|.|||||++.+....
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999998654
No 479
>PRK04182 cytidylate kinase; Provisional
Probab=93.80 E-value=0.15 Score=49.72 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCC
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGF 230 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~ 230 (888)
+|.|.|+.|+||||+|+.+.+.. . + -+++.+++...+....+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l---g--~---~~id~~~~~~~~~~~~g~ 44 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL---G--L---KHVSAGEIFRELAKERGM 44 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--C---cEecHHHHHHHHHHHcCC
Confidence 68999999999999999998876 1 1 234444666666665554
No 480
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.79 E-value=0.12 Score=52.32 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 181 IGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
|.|.|++|+||||+|+.+.... ....++.++++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~--------g~~~is~gdllr~ 43 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE--------NLKHINMGNILRE 43 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--------CCcEEECChHHHH
Confidence 8899999999999999998775 1234555655544
No 481
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.77 E-value=0.15 Score=51.86 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.2
Q ss_pred EEcCCCCcHHHHHHHHHhcc
Q 046470 183 LYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 183 I~G~gGvGKTtLa~~v~~~~ 202 (888)
|+|++|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987
No 482
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.77 E-value=0.31 Score=53.71 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-..|++||+.|+|||||.+.++-+.
T Consensus 415 ~~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 415 LDSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred cccceeEecCCCCchhhhHHHHhhcc
Confidence 34679999999999999999998887
No 483
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.77 E-value=0.045 Score=54.31 Aligned_cols=117 Identities=13% Similarity=0.134 Sum_probs=61.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----chHHHHHHHcCCChhhh-cCCCHHHHHHHHHHHh
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS----TLQDDIGKRIGFSENWW-KKKSPEEKAVDISSIL 251 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l 251 (888)
...++.|.|+.|.||||+.+.+..... ..+.. ..|... .+.+.|...++..+... ...+...-..++...+
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~--la~~G--~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAI--MAQIG--CFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--HHHcC--CCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 347899999999999999998865431 11111 111111 34445544444332100 0011111111222222
Q ss_pred --ccCcEEEEEccCCC---ccch----hhhCCCCCCCCCCcEEEEEecchhhhhccC
Q 046470 252 --SRKEFVLLLDDIWK---PINL----KDMGVPLQNLNAGSKIVLTTRSVDVCDQMD 299 (888)
Q Consensus 252 --~~k~~LlVlDdv~~---~~~~----~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 299 (888)
..++-|+++|+... ..+- ..+...+. ..|..+|+||-..+++....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 35688999999843 2221 11222222 23788999999988876554
No 484
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.75 E-value=0.11 Score=54.22 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=38.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGK 226 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~ 226 (888)
+.-+++.|+|.+|+|||+++.++.... ......++||+...-..++.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEESPEELLE 68 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCCHHHHHH
Confidence 566899999999999999999998887 445888999999844444443
No 485
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.75 E-value=0.29 Score=47.87 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=64.7
Q ss_pred HHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCC--EEEEEEec-chH--------HHHHHHcCCChhhh
Q 046470 167 VWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD--VVIWAAVS-TLQ--------DDIGKRIGFSENWW 235 (888)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~-~l~--------~~i~~~l~~~~~~~ 235 (888)
++..|.+ ....-..|.|++|+||||+.+.+++..+.....|- .+.-|+-+ ++. ..+...+..-
T Consensus 128 li~~ly~--~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVl---- 201 (308)
T COG3854 128 LIKDLYQ--NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVL---- 201 (308)
T ss_pred HHHHHHh--cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhc----
Confidence 5555555 44555789999999999999999887743334443 22223222 111 1111111111
Q ss_pred cCCC-HHHHHHHHHHHhccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhh
Q 046470 236 KKKS-PEEKAVDISSILSRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDV 294 (888)
Q Consensus 236 ~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 294 (888)
+... .+.+...++. .-+=++|+|.+-..++-..+..++ ..|-++|.|..-..+
T Consensus 202 d~cpk~~gmmmaIrs---m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 202 DPCPKAEGMMMAIRS---MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred ccchHHHHHHHHHHh---cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 1111 1122222322 357799999999887766665444 357888777665443
No 486
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.74 E-value=0.13 Score=59.20 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
.++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 589999999998887755 34456789999999999999999864
No 487
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=93.74 E-value=0.11 Score=56.83 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=71.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCE---E--EEEEec---------------------------chHHHHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDV---V--IWAAVS---------------------------TLQDDIG 225 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~---~--~wv~~~---------------------------~l~~~i~ 225 (888)
-+..++||..|+|||||.+++.+.. ...|.. + ..+... ++...|+
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~~~---v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIANGQ---VSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHhcC---cCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 3678999999999999999999943 223321 1 111100 1122244
Q ss_pred HHcCCChhh-----hcCCCHHHHHHHHHHHhccCcEEEEEccCCCccchhh---hCCCCCCCCCCcEEEEEecchhhhhc
Q 046470 226 KRIGFSENW-----WKKKSPEEKAVDISSILSRKEFVLLLDDIWKPINLKD---MGVPLQNLNAGSKIVLTTRSVDVCDQ 297 (888)
Q Consensus 226 ~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~---l~~~l~~~~~gs~iivTtR~~~v~~~ 297 (888)
..+|...+- -.-.....+.-.+.+.+-.++=||.||.-.+.-|... +...+.. .+.-+||.|-++.....
T Consensus 183 ~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t--~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 183 AGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT--WKITSLIVSHDRNFLNT 260 (582)
T ss_pred HhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh--CCceEEEEeccHHHHHH
Confidence 455554321 0112234455567777778899999998876543221 2223322 12557788888777666
Q ss_pred cCCceeEcCC
Q 046470 298 MDAEKVEVSC 307 (888)
Q Consensus 298 ~~~~~~~l~~ 307 (888)
..++++++..
T Consensus 261 V~tdIIH~~~ 270 (582)
T KOG0062|consen 261 VCTDIIHLEN 270 (582)
T ss_pred HHHHHHHHhh
Confidence 5555444443
No 488
>PRK14531 adenylate kinase; Provisional
Probab=93.71 E-value=0.17 Score=49.49 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..|.|.|++|+||||+++.+....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998775
No 489
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.71 E-value=0.055 Score=52.77 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998765
No 490
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.70 E-value=0.064 Score=53.89 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=64.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHcCCChhhh-cCCCHHHHHHHHHHHhc-
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRIGFSENWW-KKKSPEEKAVDISSILS- 252 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l~- 252 (888)
..+++.|.|+.|.||||+.+.+.-.. ...+-.+.+|..-. ...++|...++..+... ...+-..-..++...++
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~--~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~ 107 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALIT--IMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSN 107 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHh
Confidence 34688999999999999999987732 12222333343211 23333333333221100 11222333334444443
Q ss_pred -cCcEEEEEccCCCcc---c----hhhhCCCCCCCCCCcEEEEEecchhhhhcc
Q 046470 253 -RKEFVLLLDDIWKPI---N----LKDMGVPLQNLNAGSKIVLTTRSVDVCDQM 298 (888)
Q Consensus 253 -~k~~LlVlDdv~~~~---~----~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 298 (888)
+++-|+++|+.-.-. + ...+...+.. ..++.+|++|...+++...
T Consensus 108 ~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 108 CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHHH
Confidence 578999999974321 1 1112222222 2478899999998876543
No 491
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.68 E-value=0.098 Score=56.06 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+||.+..+..++-.+.+ +...-+.|.|..|+||||+++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~--~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVID--PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcC--CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 579999999888776666 456668899999999999999997554
No 492
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.68 E-value=0.084 Score=51.65 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEE
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAA 216 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 216 (888)
.++|.|+|+.|+|||||++.+.... ...|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999876 56675444443
No 493
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.67 E-value=0.31 Score=50.67 Aligned_cols=26 Identities=38% Similarity=0.696 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||++.+....
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998865
No 494
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.66 E-value=0.22 Score=54.85 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----chHHHHHHHcCCCh---h----hhcCCCHHH---
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS----TLQDDIGKRIGFSE---N----WWKKKSPEE--- 242 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----~l~~~i~~~l~~~~---~----~~~~~~~~~--- 242 (888)
.-..++|.|..|+|||||.+.+++.. .-+.++.+-++ ++.+-+-..++... . ...+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 34679999999999999999998875 23566777666 33222222222111 0 001111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEccCCCc
Q 046470 243 ---KAVDISSIL--SRKEFVLLLDDIWKP 266 (888)
Q Consensus 243 ---~~~~l~~~l--~~k~~LlVlDdv~~~ 266 (888)
....+.+++ +++.+|+++||+...
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122355555 588999999999653
No 495
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.65 E-value=0.22 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+..-.
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998764
No 496
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.64 E-value=0.07 Score=53.19 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.....|.++||+|.||||..+.++...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 345688899999999999999999887
No 497
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.64 E-value=0.18 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 046470 181 IGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999876
No 498
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.64 E-value=0.32 Score=50.87 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|..|.|||||++.++.-.
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 34589999999999999999998765
No 499
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.64 E-value=0.46 Score=51.07 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccc---ccCCCCEEEEEEec-----chHHHHHHHcCCC
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCH---EQHHFDVVIWAAVS-----TLQDDIGKRIGFS 231 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~-----~l~~~i~~~l~~~ 231 (888)
..-.++-|+|.+|+|||+++..++-.... ....-..++|++.. +-+.+|++.++..
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~ 184 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLN 184 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCC
Confidence 34678899999999999999987754310 11122378999887 3355677777654
No 500
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.63 E-value=0.053 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
Done!