Query 046470
Match_columns 888
No_of_seqs 649 out of 4131
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 22:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.3E-46 3.2E-50 427.7 25.5 303 154-476 127-470 (549)
2 1vt4_I APAF-1 related killer D 100.0 6.5E-39 2.2E-43 371.7 15.8 280 155-470 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-37 6.5E-42 398.2 24.4 305 154-476 123-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 5E-35 1.7E-39 343.9 24.6 301 155-474 124-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 4.3E-25 1.5E-29 241.3 17.6 290 496-843 38-328 (347)
6 4fmz_A Internalin; leucine ric 99.9 3.4E-24 1.2E-28 234.2 19.9 293 488-836 52-344 (347)
7 3o6n_A APL1; leucine-rich repe 99.9 5E-24 1.7E-28 236.8 15.1 290 500-846 43-338 (390)
8 3v47_A TOLL-like receptor 5B a 99.9 2E-23 6.8E-28 237.3 18.4 340 489-855 19-400 (455)
9 1o6v_A Internalin A; bacterial 99.9 7.3E-23 2.5E-27 232.9 21.8 134 491-632 57-190 (466)
10 3oja_B Anopheles plasmodium-re 99.9 1.1E-23 3.8E-28 247.0 14.0 286 500-842 49-340 (597)
11 4ecn_A Leucine-rich repeat pro 99.9 3.1E-23 1.1E-27 248.6 17.9 323 496-858 442-835 (876)
12 2id5_A Lingo-1, leucine rich r 99.9 8.2E-23 2.8E-27 233.6 20.1 293 502-836 32-331 (477)
13 2id5_A Lingo-1, leucine rich r 99.9 1.8E-22 6.2E-27 230.7 22.5 307 505-855 14-325 (477)
14 4eco_A Uncharacterized protein 99.9 2.2E-23 7.5E-28 245.9 15.3 339 498-858 202-595 (636)
15 2z63_A TOLL-like receptor 4, v 99.9 1.7E-22 5.9E-27 236.7 22.2 141 490-632 17-162 (570)
16 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-22 6.3E-27 238.1 21.9 143 489-633 20-167 (606)
17 1o6v_A Internalin A; bacterial 99.9 1.1E-22 3.6E-27 231.5 19.0 314 499-842 43-369 (466)
18 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-22 6.4E-27 235.1 19.4 172 502-673 26-210 (549)
19 3v47_A TOLL-like receptor 5B a 99.9 2.2E-22 7.4E-27 228.7 19.0 310 496-842 48-412 (455)
20 2ft3_A Biglycan; proteoglycan, 99.9 7.4E-23 2.5E-27 221.9 13.6 293 503-836 34-331 (332)
21 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-22 4.2E-27 239.7 16.5 110 497-606 51-165 (606)
22 2z7x_B TOLL-like receptor 1, v 99.9 6.1E-22 2.1E-26 229.1 21.9 333 502-855 21-473 (520)
23 3o6n_A APL1; leucine-rich repe 99.9 2.5E-22 8.7E-27 223.0 17.1 270 521-844 42-313 (390)
24 1xku_A Decorin; proteoglycan, 99.9 3.6E-22 1.2E-26 216.4 17.8 293 503-835 32-329 (330)
25 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-22 4.7E-27 228.6 15.0 123 497-630 37-159 (457)
26 3t6q_A CD180 antigen; protein- 99.9 6.4E-22 2.2E-26 233.5 20.6 327 502-857 33-432 (606)
27 3rgz_A Protein brassinosteroid 99.9 1.1E-22 3.9E-27 245.6 14.3 132 498-632 196-331 (768)
28 3t6q_A CD180 antigen; protein- 99.9 5.9E-22 2E-26 233.8 19.3 66 498-563 125-194 (606)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-21 5.7E-26 237.9 23.8 148 484-633 8-162 (844)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-21 3.5E-26 229.1 19.9 348 488-855 39-502 (562)
31 3bz5_A Internalin-J, INLJ; leu 99.9 6.7E-22 2.3E-26 223.0 17.3 303 491-842 53-355 (457)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2E-21 7E-26 226.6 21.6 328 502-857 31-480 (562)
33 1ziw_A TOLL-like receptor 3; i 99.9 3.1E-21 1.1E-25 230.9 23.0 142 489-632 13-158 (680)
34 2z63_A TOLL-like receptor 4, v 99.9 3.2E-22 1.1E-26 234.4 13.6 344 497-856 47-524 (570)
35 3oja_B Anopheles plasmodium-re 99.9 8.7E-22 3E-26 231.0 16.2 269 522-844 49-319 (597)
36 2z81_A CD282 antigen, TOLL-lik 99.9 2E-21 6.9E-26 226.4 17.8 134 496-630 44-183 (549)
37 3rgz_A Protein brassinosteroid 99.9 8.5E-22 2.9E-26 238.0 14.5 331 498-855 174-543 (768)
38 4ecn_A Leucine-rich repeat pro 99.9 2E-21 6.8E-26 232.9 17.3 318 500-843 489-844 (876)
39 4eco_A Uncharacterized protein 99.9 6.8E-22 2.3E-26 233.2 12.1 313 500-844 247-605 (636)
40 4fcg_A Uncharacterized protein 99.9 1.9E-21 6.4E-26 209.8 14.4 111 740-865 205-316 (328)
41 2z7x_B TOLL-like receptor 1, v 99.9 7.9E-21 2.7E-25 219.7 19.9 105 497-606 40-150 (520)
42 1ogq_A PGIP-2, polygalacturona 99.8 1.7E-21 5.8E-26 208.8 11.5 129 502-631 50-186 (313)
43 4fcg_A Uncharacterized protein 99.8 1.4E-20 4.8E-25 202.9 17.1 229 524-834 81-310 (328)
44 1ziw_A TOLL-like receptor 3; i 99.8 2.1E-20 7.1E-25 223.7 20.1 311 505-843 7-372 (680)
45 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-20 3.9E-25 230.6 17.5 293 505-843 7-379 (844)
46 2z80_A TOLL-like receptor 2, v 99.8 2.1E-20 7.2E-25 204.4 14.7 269 506-836 35-312 (353)
47 2z80_A TOLL-like receptor 2, v 99.8 2.9E-20 9.9E-25 203.3 13.5 261 490-812 41-312 (353)
48 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-19 7.3E-24 213.3 21.7 142 490-633 41-187 (635)
49 1xku_A Decorin; proteoglycan, 99.8 1.7E-19 5.8E-24 195.3 19.0 247 524-844 31-281 (330)
50 2z66_A Variable lymphocyte rec 99.8 1.7E-19 5.8E-24 193.0 17.3 126 505-632 10-139 (306)
51 3zyj_A Leucine-rich repeat-con 99.8 5.9E-20 2E-24 207.2 13.6 240 506-775 47-290 (440)
52 3zyi_A Leucine-rich repeat-con 99.8 6.8E-20 2.3E-24 207.5 13.6 239 506-774 58-300 (452)
53 2ft3_A Biglycan; proteoglycan, 99.8 9.8E-20 3.4E-24 197.3 14.2 263 524-837 33-306 (332)
54 3g06_A SSPH2 (leucine-rich rep 99.8 3.5E-19 1.2E-23 206.7 19.3 113 502-631 61-173 (622)
55 3zyj_A Leucine-rich repeat-con 99.8 2E-19 6.7E-24 202.9 13.7 233 491-752 54-290 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 1.4E-19 4.9E-24 204.8 12.3 223 502-752 75-301 (452)
57 2z66_A Variable lymphocyte rec 99.8 1.3E-18 4.6E-23 186.1 16.6 131 501-632 27-163 (306)
58 1jl5_A Outer protein YOPM; leu 99.8 1.6E-18 5.6E-23 195.1 17.7 181 502-723 111-291 (454)
59 1ogq_A PGIP-2, polygalacturona 99.8 1.9E-19 6.6E-24 192.8 8.7 233 495-818 69-308 (313)
60 1jl5_A Outer protein YOPM; leu 99.8 2.1E-18 7.2E-23 194.2 17.3 117 502-631 91-207 (454)
61 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-18 4.7E-23 186.7 13.5 248 522-845 32-282 (317)
62 4g8a_A TOLL-like receptor 4; l 99.8 3E-18 1E-22 203.4 17.9 335 497-855 71-572 (635)
63 3o53_A Protein LRIM1, AGAP0063 99.8 5.6E-20 1.9E-24 197.6 2.4 266 500-840 32-301 (317)
64 3g06_A SSPH2 (leucine-rich rep 99.8 8.7E-18 3E-22 194.9 20.2 255 503-836 41-295 (622)
65 3oja_A Leucine-rich immune mol 99.8 2.4E-18 8.4E-23 195.7 14.3 237 521-833 31-270 (487)
66 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-18 4.6E-23 183.9 10.9 219 505-776 14-237 (285)
67 1ozn_A Reticulon 4 receptor; N 99.7 1.3E-17 4.3E-22 176.4 12.8 219 527-812 14-236 (285)
68 3oja_A Leucine-rich immune mol 99.7 1.3E-18 4.5E-23 198.0 4.3 238 500-812 32-273 (487)
69 1h6u_A Internalin H; cell adhe 99.7 2.9E-17 9.9E-22 175.3 14.1 125 499-630 38-162 (308)
70 1wwl_A Monocyte differentiatio 99.7 1.3E-18 4.5E-23 186.4 2.7 244 501-812 42-307 (312)
71 1p9a_G Platelet glycoprotein I 99.7 7.9E-17 2.7E-21 170.1 15.5 132 498-632 6-137 (290)
72 1h6u_A Internalin H; cell adhe 99.7 5.2E-17 1.8E-21 173.3 13.5 102 523-631 40-141 (308)
73 1wwl_A Monocyte differentiatio 99.7 5.1E-18 1.7E-22 181.8 4.9 247 522-836 41-307 (312)
74 2xwt_C Thyrotropin receptor; s 99.7 8.1E-17 2.8E-21 165.3 13.2 81 525-605 32-116 (239)
75 2z62_A TOLL-like receptor 4, v 99.7 9.7E-17 3.3E-21 168.7 13.1 107 524-631 28-136 (276)
76 2xwt_C Thyrotropin receptor; s 99.7 1.2E-16 4E-21 164.1 13.0 100 529-632 16-118 (239)
77 3rfs_A Internalin B, repeat mo 99.7 8.6E-17 2.9E-21 168.5 12.0 132 497-631 36-169 (272)
78 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 167.1 12.6 128 503-632 17-146 (270)
79 2o6q_A Variable lymphocyte rec 99.7 3.6E-16 1.2E-20 163.7 15.8 104 525-632 17-122 (270)
80 1z7x_W Ribonuclease inhibitor; 99.7 3.3E-18 1.1E-22 194.5 -0.3 312 500-836 54-409 (461)
81 3rfs_A Internalin B, repeat mo 99.7 1.8E-16 6E-21 166.2 11.6 103 524-631 19-121 (272)
82 2z62_A TOLL-like receptor 4, v 99.7 2.5E-16 8.7E-21 165.5 12.8 203 502-753 28-236 (276)
83 1p9a_G Platelet glycoprotein I 99.6 1.6E-15 5.4E-20 160.1 16.8 197 521-812 7-206 (290)
84 3ogk_B Coronatine-insensitive 99.6 1.6E-16 5.4E-21 186.8 9.5 309 500-841 162-528 (592)
85 1z7x_W Ribonuclease inhibitor; 99.6 1.9E-17 6.4E-22 188.3 0.9 318 503-839 4-383 (461)
86 2ast_B S-phase kinase-associat 99.6 8.3E-17 2.8E-21 174.6 5.7 208 544-811 64-282 (336)
87 2qen_A Walker-type ATPase; unk 99.6 1.2E-14 4E-19 158.6 22.8 284 155-471 12-349 (350)
88 4ay9_X Follicle-stimulating ho 99.6 1.8E-15 6.1E-20 164.7 16.2 238 527-834 12-255 (350)
89 4ay9_X Follicle-stimulating ho 99.6 2.6E-15 8.9E-20 163.4 16.0 239 505-810 12-255 (350)
90 2fna_A Conserved hypothetical 99.6 2.6E-14 9E-19 156.3 22.4 283 155-470 13-356 (357)
91 1h6t_A Internalin B; cell adhe 99.6 1.9E-15 6.6E-20 159.6 12.2 188 524-775 24-211 (291)
92 3ogk_B Coronatine-insensitive 99.6 2.8E-16 9.7E-21 184.7 5.3 314 499-835 189-548 (592)
93 1m9s_A Internalin B; cell inva 99.6 2.6E-15 8.9E-20 174.0 11.5 188 524-775 21-208 (605)
94 4glp_A Monocyte differentiatio 99.6 6.4E-16 2.2E-20 165.3 5.4 205 547-812 90-305 (310)
95 1w5s_A Origin recognition comp 99.6 2.1E-14 7.2E-19 160.4 17.9 296 155-466 22-387 (412)
96 1h6t_A Internalin B; cell adhe 99.6 2.1E-15 7.1E-20 159.4 9.1 129 497-632 41-169 (291)
97 2ast_B S-phase kinase-associat 99.6 4E-16 1.4E-20 169.2 2.9 218 504-774 49-282 (336)
98 3m19_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 149.7 14.2 128 503-632 15-144 (251)
99 2p1m_B Transport inhibitor res 99.6 6.4E-16 2.2E-20 181.7 2.7 128 500-630 154-300 (594)
100 2ca6_A RAN GTPase-activating p 99.6 7.3E-16 2.5E-20 170.5 3.0 85 522-606 30-134 (386)
101 4ezg_A Putative uncharacterize 99.5 4.9E-15 1.7E-19 146.8 8.2 151 499-671 41-193 (197)
102 2ca6_A RAN GTPase-activating p 99.5 7.9E-16 2.7E-20 170.2 2.4 132 500-631 30-199 (386)
103 3m19_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 146.2 12.1 153 502-671 35-191 (251)
104 1m9s_A Internalin B; cell inva 99.5 1.1E-14 3.6E-19 168.9 8.4 150 497-671 38-187 (605)
105 3goz_A Leucine-rich repeat-con 99.5 1E-14 3.4E-19 159.7 6.8 258 507-812 3-295 (362)
106 4glp_A Monocyte differentiatio 99.5 3.8E-14 1.3E-18 151.5 10.1 108 524-631 91-209 (310)
107 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 140.4 12.5 131 502-633 40-173 (229)
108 1xeu_A Internalin C; cellular 99.5 6E-14 2.1E-18 145.6 9.5 152 495-672 34-185 (263)
109 2p1m_B Transport inhibitor res 99.5 2.6E-15 9E-20 176.5 -1.1 298 500-837 182-518 (594)
110 3qfl_A MLA10; coiled-coil, (CC 99.5 2.1E-13 7.2E-18 119.7 11.0 81 10-97 3-83 (115)
111 1xeu_A Internalin C; cellular 99.5 1.1E-13 3.7E-18 143.7 10.7 104 521-632 16-119 (263)
112 2v9t_B SLIT homolog 2 protein 99.5 2.1E-13 7.3E-18 137.4 11.5 131 502-633 32-166 (220)
113 3goz_A Leucine-rich repeat-con 99.5 7.5E-15 2.5E-19 160.7 0.7 237 502-779 22-298 (362)
114 4ezg_A Putative uncharacterize 99.5 2E-13 6.9E-18 135.1 10.9 140 489-632 53-194 (197)
115 2v9t_B SLIT homolog 2 protein 99.4 1.1E-13 3.8E-18 139.5 9.1 148 505-670 14-163 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.4 2E-13 7E-18 137.6 9.9 125 506-632 15-142 (220)
117 3cvr_A Invasion plasmid antige 99.4 7.6E-13 2.6E-17 151.5 14.7 114 503-632 60-173 (571)
118 3cvr_A Invasion plasmid antige 99.4 5.4E-13 1.9E-17 152.7 13.4 181 525-775 60-241 (571)
119 2o6s_A Variable lymphocyte rec 99.4 4.8E-13 1.6E-17 133.8 11.1 131 501-632 27-161 (208)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 3.1E-13 1.1E-17 136.2 9.2 131 502-633 32-167 (220)
121 3e6j_A Variable lymphocyte rec 99.4 3.2E-13 1.1E-17 137.1 8.9 148 504-670 21-170 (229)
122 2ell_A Acidic leucine-rich nuc 99.4 2.7E-13 9.1E-18 130.5 6.8 128 502-632 24-160 (168)
123 1a9n_A U2A', U2A'; complex (nu 99.4 1.6E-13 5.3E-18 133.2 5.0 130 498-630 15-151 (176)
124 2v1u_A Cell division control p 99.4 1.3E-11 4.5E-16 136.3 20.7 283 155-455 19-351 (387)
125 2xot_A Amphoterin-induced prot 99.4 4.1E-13 1.4E-17 146.7 7.7 126 505-632 21-149 (361)
126 2o6s_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 130.9 10.3 147 505-669 10-158 (208)
127 2je0_A Acidic leucine-rich nuc 99.4 3.4E-13 1.2E-17 126.8 5.8 123 502-627 17-148 (149)
128 2qby_B CDC6 homolog 3, cell di 99.4 4.1E-11 1.4E-15 132.2 22.8 284 155-455 20-339 (384)
129 2xot_A Amphoterin-induced prot 99.4 1.2E-12 4.1E-17 142.9 10.1 152 502-670 39-200 (361)
130 1w8a_A SLIT protein; signaling 99.3 2.8E-12 9.6E-17 126.2 9.8 127 505-633 11-140 (192)
131 2o6r_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 122.4 10.8 128 504-633 9-138 (177)
132 2wfh_A SLIT homolog 2 protein 99.3 5.3E-12 1.8E-16 124.1 10.5 126 505-633 13-140 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-12 5.1E-17 126.3 6.2 142 517-674 12-155 (176)
134 2qby_A CDC6 homolog 1, cell di 99.3 1.4E-10 4.7E-15 128.1 22.0 284 155-454 20-347 (386)
135 1fnn_A CDC6P, cell division co 99.3 1.6E-10 5.3E-15 127.8 21.7 286 155-455 17-351 (389)
136 2je0_A Acidic leucine-rich nuc 99.3 2.8E-12 9.7E-17 120.5 5.5 128 522-666 15-147 (149)
137 2ell_A Acidic leucine-rich nuc 99.2 2.4E-11 8.4E-16 116.7 11.0 114 498-612 45-164 (168)
138 1dce_A Protein (RAB geranylger 99.2 1.5E-11 5.2E-16 141.6 9.3 102 526-631 443-545 (567)
139 1dce_A Protein (RAB geranylger 99.2 1.6E-11 5.5E-16 141.4 8.8 121 503-626 442-567 (567)
140 2wfh_A SLIT homolog 2 protein 99.2 2.2E-11 7.6E-16 119.6 7.8 124 527-670 13-137 (193)
141 4b8c_D Glucose-repressible alc 99.2 1.5E-11 5.2E-16 146.2 7.9 110 520-632 220-329 (727)
142 1njg_A DNA polymerase III subu 99.2 7.4E-11 2.5E-15 121.1 11.2 196 155-357 23-231 (250)
143 4b8c_D Glucose-repressible alc 99.2 2.3E-11 7.9E-16 144.7 7.6 151 502-672 173-329 (727)
144 1w8a_A SLIT protein; signaling 99.2 2E-11 6.9E-16 120.0 5.7 124 527-670 11-137 (192)
145 2chg_A Replication factor C sm 99.1 3.6E-10 1.2E-14 114.1 14.8 178 155-355 17-205 (226)
146 3sb4_A Hypothetical leucine ri 99.1 7.8E-11 2.7E-15 126.8 9.9 100 707-831 224-327 (329)
147 1ds9_A Outer arm dynein; leuci 99.1 3.4E-12 1.2E-16 126.3 -1.0 110 543-671 43-152 (198)
148 1ds9_A Outer arm dynein; leuci 99.1 1.8E-12 6.2E-17 128.3 -4.5 153 503-665 24-180 (198)
149 2o6r_A Variable lymphocyte rec 99.1 1.7E-10 6E-15 111.7 9.4 111 501-611 27-141 (177)
150 3sb4_A Hypothetical leucine ri 99.1 1E-10 3.5E-15 125.8 8.3 100 739-856 224-327 (329)
151 2r9u_A Variable lymphocyte rec 99.1 1.7E-10 5.7E-15 111.2 8.0 102 528-633 16-119 (174)
152 3g39_A Variable lymphocyte rec 99.1 2.1E-10 7E-15 110.2 8.1 104 526-633 11-116 (170)
153 2r9u_A Variable lymphocyte rec 99.1 2.2E-10 7.4E-15 110.4 8.0 101 505-606 15-117 (174)
154 3g39_A Variable lymphocyte rec 99.0 2.2E-10 7.6E-15 109.9 7.7 102 504-606 11-114 (170)
155 1sxj_B Activator 1 37 kDa subu 99.0 1.1E-09 3.8E-14 117.4 10.9 179 155-356 21-212 (323)
156 1hqc_A RUVB; extended AAA-ATPa 98.9 7.2E-09 2.4E-13 111.1 12.6 175 155-357 12-214 (324)
157 4fdw_A Leucine rich hypothetic 98.9 4.9E-08 1.7E-12 107.2 19.4 98 525-627 136-234 (401)
158 4fdw_A Leucine rich hypothetic 98.9 3.5E-08 1.2E-12 108.4 17.7 122 498-627 132-256 (401)
159 2ifg_A High affinity nerve gro 98.7 7.9E-09 2.7E-13 112.0 7.2 99 530-632 14-116 (347)
160 1iqp_A RFCS; clamp loader, ext 98.7 1.4E-08 4.7E-13 109.0 9.1 180 155-357 25-215 (327)
161 2ifg_A High affinity nerve gro 98.7 2.2E-08 7.4E-13 108.5 8.5 101 506-606 12-115 (347)
162 2chq_A Replication factor C sm 98.6 1.4E-07 4.8E-12 100.7 11.0 179 155-354 17-204 (319)
163 1jr3_A DNA polymerase III subu 98.6 5.7E-07 2E-11 98.3 16.0 192 155-354 16-221 (373)
164 3te6_A Regulatory protein SIR3 98.6 4E-07 1.4E-11 95.1 13.5 167 156-323 21-213 (318)
165 3bos_A Putative DNA replicatio 98.6 1.2E-07 4E-12 96.7 9.3 171 155-354 28-217 (242)
166 1jbk_A CLPB protein; beta barr 98.5 1.1E-07 3.9E-12 93.0 8.0 150 155-317 22-194 (195)
167 3un9_A NLR family member X1; l 98.5 1.5E-08 5.1E-13 110.2 0.2 104 502-605 72-194 (372)
168 2z4s_A Chromosomal replication 98.5 5.7E-07 1.9E-11 99.9 13.0 181 156-352 106-304 (440)
169 3un9_A NLR family member X1; l 98.4 1.8E-08 6.3E-13 109.5 -0.8 130 502-632 101-252 (372)
170 4fs7_A Uncharacterized protein 98.4 8.6E-07 2.9E-11 97.6 11.8 124 497-627 66-193 (394)
171 1sxj_D Activator 1 41 kDa subu 98.3 1.6E-06 5.4E-11 94.0 11.3 188 155-354 37-235 (353)
172 1l8q_A Chromosomal replication 98.3 4.1E-06 1.4E-10 89.4 13.3 167 163-349 22-203 (324)
173 3e4g_A ATP synthase subunit S, 98.2 4E-07 1.4E-11 85.8 3.2 86 742-840 62-154 (176)
174 1d2n_A N-ethylmaleimide-sensit 98.2 3.6E-05 1.2E-09 79.6 18.3 195 156-375 34-263 (272)
175 3h4m_A Proteasome-activating n 98.2 5.5E-06 1.9E-10 86.6 11.5 178 155-353 17-230 (285)
176 3syl_A Protein CBBX; photosynt 98.2 6.7E-06 2.3E-10 87.1 12.1 153 156-324 32-220 (309)
177 3uk6_A RUVB-like 2; hexameric 98.2 2.1E-05 7.2E-10 85.6 16.1 189 155-353 44-302 (368)
178 3pvs_A Replication-associated 98.2 9.3E-06 3.2E-10 89.8 13.3 173 155-353 26-214 (447)
179 3pfi_A Holliday junction ATP-d 98.2 1.3E-05 4.3E-10 86.2 14.0 171 155-354 29-227 (338)
180 3e4g_A ATP synthase subunit S, 98.2 9.4E-07 3.2E-11 83.2 4.1 89 709-817 61-155 (176)
181 1sxj_A Activator 1 95 kDa subu 98.1 1.1E-05 3.9E-10 91.6 13.4 184 155-355 39-254 (516)
182 3rw6_A Nuclear RNA export fact 98.1 7.9E-07 2.7E-11 90.5 3.2 107 520-627 137-259 (267)
183 3d8b_A Fidgetin-like protein 1 98.1 1.9E-05 6.6E-10 85.2 14.2 178 155-355 84-296 (357)
184 4fs7_A Uncharacterized protein 98.1 1.3E-05 4.3E-10 88.2 12.9 127 496-629 88-218 (394)
185 3u61_B DNA polymerase accessor 98.1 1.3E-05 4.6E-10 85.4 12.7 169 155-352 26-214 (324)
186 2ra8_A Uncharacterized protein 98.1 4E-06 1.4E-10 90.2 8.4 63 586-668 164-228 (362)
187 3eie_A Vacuolar protein sortin 98.1 3.3E-05 1.1E-09 82.0 15.6 179 155-354 18-228 (322)
188 1sxj_E Activator 1 40 kDa subu 98.1 7.8E-06 2.7E-10 88.5 10.5 194 155-354 14-237 (354)
189 1xwi_A SKD1 protein; VPS4B, AA 98.1 9.9E-05 3.4E-09 78.2 18.6 179 155-354 12-223 (322)
190 2qz4_A Paraplegin; AAA+, SPG7, 98.1 3.1E-05 1.1E-09 79.7 13.6 180 155-353 6-221 (262)
191 2qp9_X Vacuolar protein sortin 98.0 8.1E-05 2.8E-09 80.1 16.3 178 155-354 51-261 (355)
192 3vfd_A Spastin; ATPase, microt 98.0 0.00011 3.9E-09 80.2 17.8 179 155-354 115-326 (389)
193 2p65_A Hypothetical protein PF 98.0 1.6E-05 5.3E-10 77.0 9.1 46 155-202 22-67 (187)
194 1sxj_C Activator 1 40 kDa subu 98.0 2.3E-05 7.9E-10 84.1 11.3 171 156-350 26-208 (340)
195 2zan_A Vacuolar protein sortin 98.0 0.00019 6.4E-09 79.7 18.5 179 155-354 134-345 (444)
196 3b9p_A CG5977-PA, isoform A; A 98.0 0.00015 5.3E-09 76.0 16.8 178 155-354 21-233 (297)
197 4gt6_A Cell surface protein; l 98.0 0.00016 5.3E-09 79.4 17.5 119 503-627 65-190 (394)
198 1io0_A Tropomodulin; LRR prote 97.9 7.5E-06 2.6E-10 79.2 4.9 116 544-672 32-164 (185)
199 2ra8_A Uncharacterized protein 97.9 5E-06 1.7E-10 89.4 3.5 132 499-632 169-320 (362)
200 3n70_A Transport activator; si 97.9 5.8E-06 2E-10 76.4 3.2 47 156-202 2-48 (145)
201 1io0_A Tropomodulin; LRR prote 97.9 2.9E-06 1E-10 82.1 1.1 111 521-632 33-164 (185)
202 3pxg_A Negative regulator of g 97.8 8.5E-05 2.9E-09 83.1 12.2 148 156-323 181-340 (468)
203 1a5t_A Delta prime, HOLB; zinc 97.8 0.00024 8.2E-09 75.7 15.0 168 161-353 8-204 (334)
204 1qvr_A CLPB protein; coiled co 97.8 8.1E-05 2.8E-09 90.1 12.0 178 155-345 170-370 (854)
205 4gt6_A Cell surface protein; l 97.7 0.00051 1.8E-08 75.2 17.0 105 520-628 59-169 (394)
206 1in4_A RUVB, holliday junction 97.7 0.00037 1.3E-08 74.3 15.2 170 156-353 26-222 (334)
207 3cf0_A Transitional endoplasmi 97.7 0.00039 1.3E-08 72.9 15.1 174 155-349 15-223 (301)
208 3ec2_A DNA replication protein 97.7 1.6E-05 5.6E-10 76.5 3.6 118 160-291 19-142 (180)
209 2w58_A DNAI, primosome compone 97.7 9.1E-05 3.1E-09 72.7 8.7 116 161-291 35-158 (202)
210 3rw6_A Nuclear RNA export fact 97.6 3.6E-05 1.2E-09 78.3 5.3 75 526-601 172-258 (267)
211 3hu3_A Transitional endoplasmi 97.6 0.00019 6.5E-09 80.2 11.6 176 156-352 205-413 (489)
212 2bjv_A PSP operon transcriptio 97.6 6.3E-05 2.2E-09 77.5 6.9 63 155-220 6-68 (265)
213 1ojl_A Transcriptional regulat 97.6 7.5E-05 2.6E-09 78.4 6.6 67 155-224 2-68 (304)
214 4b4t_J 26S protease regulatory 97.5 0.00054 1.8E-08 73.3 12.6 172 155-347 148-354 (405)
215 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00071 2.4E-08 81.0 15.1 153 155-321 186-362 (758)
216 1ofh_A ATP-dependent HSL prote 97.5 0.00033 1.1E-08 73.9 10.7 48 155-202 15-74 (310)
217 3pxi_A Negative regulator of g 97.5 0.00028 9.4E-09 84.4 10.8 148 155-323 180-340 (758)
218 4h09_A Hypothetical leucine ri 97.5 0.001 3.5E-08 72.4 14.5 124 499-629 43-168 (379)
219 2r62_A Cell division protease 97.5 8.1E-05 2.8E-09 76.8 5.4 152 155-323 11-198 (268)
220 2c9o_A RUVB-like 1; hexameric 97.5 0.00061 2.1E-08 76.0 12.5 48 155-202 37-87 (456)
221 3co5_A Putative two-component 97.4 3.2E-05 1.1E-09 71.1 1.4 47 156-202 5-51 (143)
222 4fcw_A Chaperone protein CLPB; 97.4 0.00054 1.9E-08 72.3 10.2 48 155-202 17-71 (311)
223 2ce7_A Cell division protein F 97.3 0.0011 3.7E-08 73.4 12.2 172 155-347 16-221 (476)
224 4b4t_L 26S protease subunit RP 97.3 0.0013 4.3E-08 71.7 12.5 172 155-347 181-387 (437)
225 1lv7_A FTSH; alpha/beta domain 97.3 0.0028 9.4E-08 64.7 14.5 176 155-351 12-222 (257)
226 4b4t_H 26S protease regulatory 97.3 0.0036 1.2E-07 67.9 15.7 171 156-347 210-415 (467)
227 4b4t_M 26S protease regulatory 97.3 0.0026 8.9E-08 69.1 14.4 171 155-346 181-386 (434)
228 2gno_A DNA polymerase III, gam 97.2 0.0012 4.2E-08 68.8 10.6 143 159-321 1-152 (305)
229 4b4t_I 26S protease regulatory 97.2 0.0069 2.3E-07 65.0 15.9 170 156-346 183-387 (437)
230 4b4t_K 26S protease regulatory 97.2 0.0039 1.3E-07 67.7 14.1 171 155-346 172-378 (428)
231 2kjq_A DNAA-related protein; s 97.1 0.00019 6.6E-09 66.2 3.2 26 177-202 35-60 (149)
232 3pxi_A Negative regulator of g 97.1 0.00036 1.2E-08 83.4 6.2 147 155-321 491-675 (758)
233 4h09_A Hypothetical leucine ri 97.0 0.0056 1.9E-07 66.4 13.4 101 520-627 42-143 (379)
234 3t15_A Ribulose bisphosphate c 96.9 0.0058 2E-07 63.5 11.9 26 177-202 35-60 (293)
235 1iy2_A ATP-dependent metallopr 96.7 0.01 3.5E-07 61.2 12.5 172 155-347 40-245 (278)
236 3cf2_A TER ATPase, transitiona 96.7 0.0028 9.5E-08 74.4 8.7 171 156-347 205-407 (806)
237 1ixz_A ATP-dependent metallopr 96.7 0.011 3.9E-07 59.9 12.3 170 155-346 16-220 (254)
238 2qgz_A Helicase loader, putati 96.7 0.0023 8E-08 66.9 7.1 66 160-227 133-199 (308)
239 1ypw_A Transitional endoplasmi 96.6 0.0052 1.8E-07 73.3 10.0 152 156-324 205-388 (806)
240 3m6a_A ATP-dependent protease 96.5 0.0073 2.5E-07 68.6 10.5 47 156-202 82-132 (543)
241 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0097 3.3E-07 66.2 11.3 168 155-347 31-236 (499)
242 2x8a_A Nuclear valosin-contain 96.5 0.032 1.1E-06 57.2 13.8 150 155-322 10-192 (274)
243 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0062 2.1E-07 72.7 8.2 48 155-202 458-512 (758)
244 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0032 1.1E-07 65.0 4.4 69 178-265 123-193 (331)
245 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0067 2.3E-07 60.6 6.5 112 178-292 23-168 (235)
246 3hr8_A Protein RECA; alpha and 96.1 0.013 4.6E-07 61.9 8.6 87 177-266 60-151 (356)
247 1g5t_A COB(I)alamin adenosyltr 96.0 0.0088 3E-07 57.0 6.2 112 178-292 28-163 (196)
248 3lw7_A Adenylate kinase relate 96.0 0.012 4E-07 55.8 7.1 20 179-198 2-21 (179)
249 3io5_A Recombination and repai 95.9 0.024 8.3E-07 58.1 9.4 87 179-266 29-123 (333)
250 1qvr_A CLPB protein; coiled co 95.9 0.0088 3E-07 72.2 7.2 47 156-202 559-612 (854)
251 1jr3_D DNA polymerase III, del 95.8 0.053 1.8E-06 57.7 12.2 156 176-353 16-184 (343)
252 1u94_A RECA protein, recombina 95.8 0.019 6.5E-07 61.0 8.4 86 177-265 62-152 (356)
253 2b8t_A Thymidine kinase; deoxy 95.7 0.0049 1.7E-07 60.7 3.3 110 177-292 11-126 (223)
254 1n0w_A DNA repair protein RAD5 95.6 0.029 1E-06 56.2 8.9 89 177-265 23-130 (243)
255 2cvh_A DNA repair and recombin 95.5 0.046 1.6E-06 53.8 9.8 83 177-265 19-116 (220)
256 3c8u_A Fructokinase; YP_612366 95.5 0.013 4.3E-07 57.5 5.5 41 162-202 6-46 (208)
257 2zr9_A Protein RECA, recombina 95.5 0.028 9.5E-07 59.7 8.5 86 177-265 60-150 (349)
258 3ice_A Transcription terminati 95.5 0.026 8.9E-07 59.4 7.8 99 166-266 163-273 (422)
259 1j8m_F SRP54, signal recogniti 95.4 0.053 1.8E-06 56.1 10.0 83 178-263 98-189 (297)
260 2orw_A Thymidine kinase; TMTK, 95.4 0.0019 6.5E-08 61.9 -1.0 105 179-292 4-113 (184)
261 1rz3_A Hypothetical protein rb 95.3 0.02 6.9E-07 55.6 6.2 44 159-202 2-46 (201)
262 1xp8_A RECA protein, recombina 95.3 0.037 1.3E-06 59.0 8.5 86 177-265 73-163 (366)
263 2z43_A DNA repair and recombin 95.3 0.065 2.2E-06 56.4 10.4 88 177-264 106-213 (324)
264 3rfe_A Platelet glycoprotein I 95.3 0.018 6E-07 51.4 5.1 36 596-632 33-68 (130)
265 1v5w_A DMC1, meiotic recombina 95.2 0.092 3.2E-06 55.7 11.4 90 176-265 120-230 (343)
266 1vma_A Cell division protein F 95.2 0.074 2.5E-06 55.1 10.1 85 177-264 103-196 (306)
267 3sr0_A Adenylate kinase; phosp 95.0 0.028 9.7E-07 54.6 6.1 77 180-265 2-85 (206)
268 3hws_A ATP-dependent CLP prote 94.9 0.021 7.2E-07 61.4 5.3 47 156-202 16-75 (363)
269 3e70_C DPA, signal recognition 94.9 0.079 2.7E-06 55.5 9.4 27 176-202 127-153 (328)
270 3rfe_A Platelet glycoprotein I 94.8 0.032 1.1E-06 49.8 5.4 54 551-606 11-67 (130)
271 1kht_A Adenylate kinase; phosp 94.8 0.087 3E-06 50.4 9.1 48 179-229 4-51 (192)
272 3dm5_A SRP54, signal recogniti 94.8 0.13 4.4E-06 55.9 11.1 26 177-202 99-124 (443)
273 2cbz_A Multidrug resistance-as 94.7 0.067 2.3E-06 53.3 8.1 25 178-202 31-55 (237)
274 1pgv_A TMD-1, tropomodulin TMD 94.7 0.029 1E-06 53.6 5.1 118 544-671 37-169 (197)
275 2dr3_A UPF0273 protein PH0284; 94.7 0.057 2E-06 54.2 7.7 38 178-218 23-60 (247)
276 1odf_A YGR205W, hypothetical 3 94.6 0.038 1.3E-06 57.0 6.1 27 176-202 29-55 (290)
277 2r44_A Uncharacterized protein 94.6 0.035 1.2E-06 58.8 6.1 44 155-202 27-70 (331)
278 2ehv_A Hypothetical protein PH 94.6 0.065 2.2E-06 53.9 7.9 40 177-218 29-68 (251)
279 1qhx_A CPT, protein (chloramph 94.6 0.018 6.2E-07 54.6 3.4 24 179-202 4-27 (178)
280 2ck3_D ATP synthase subunit be 94.6 0.074 2.5E-06 57.8 8.4 96 167-265 143-264 (482)
281 3kb2_A SPBC2 prophage-derived 94.5 0.019 6.5E-07 54.1 3.3 24 179-202 2-25 (173)
282 1sky_E F1-ATPase, F1-ATP synth 94.5 0.053 1.8E-06 59.1 7.0 38 179-218 152-189 (473)
283 2xxa_A Signal recognition part 94.4 0.15 5E-06 55.7 10.5 40 177-218 99-138 (433)
284 4a74_A DNA repair and recombin 94.4 0.11 3.7E-06 51.4 8.8 42 177-218 24-68 (231)
285 3jvv_A Twitching mobility prot 94.3 0.012 4E-07 62.6 1.5 112 177-295 122-234 (356)
286 1fx0_B ATP synthase beta chain 94.3 0.097 3.3E-06 57.1 8.6 96 167-265 155-277 (498)
287 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.031 1.1E-06 62.2 4.9 44 155-202 22-65 (500)
288 2ffh_A Protein (FFH); SRP54, s 94.3 0.11 3.8E-06 56.3 9.1 84 177-263 97-189 (425)
289 2px0_A Flagellar biosynthesis 94.3 0.1 3.6E-06 53.8 8.5 26 177-202 104-129 (296)
290 3vaa_A Shikimate kinase, SK; s 94.2 0.025 8.5E-07 54.9 3.5 26 177-202 24-49 (199)
291 1zp6_A Hypothetical protein AT 94.2 0.029 9.8E-07 53.9 3.8 26 177-202 8-33 (191)
292 3bh0_A DNAB-like replicative h 94.2 0.11 3.7E-06 54.4 8.5 47 177-226 67-117 (315)
293 1kgd_A CASK, peripheral plasma 94.2 0.026 8.9E-07 53.7 3.5 25 178-202 5-29 (180)
294 3tlx_A Adenylate kinase 2; str 94.2 0.047 1.6E-06 54.8 5.5 44 159-202 10-53 (243)
295 1ly1_A Polynucleotide kinase; 94.1 0.028 9.5E-07 53.4 3.6 22 179-200 3-24 (181)
296 3kl4_A SRP54, signal recogniti 94.1 0.18 6.1E-06 54.8 10.3 26 177-202 96-121 (433)
297 2hf9_A Probable hydrogenase ni 94.1 0.051 1.7E-06 53.8 5.6 39 162-202 24-62 (226)
298 3tui_C Methionine import ATP-b 94.1 0.058 2E-06 57.1 6.1 26 177-202 53-78 (366)
299 1um8_A ATP-dependent CLP prote 94.0 0.043 1.5E-06 59.2 5.4 48 155-202 21-96 (376)
300 2ga8_A Hypothetical 39.9 kDa p 94.0 0.061 2.1E-06 56.3 6.1 45 158-202 2-48 (359)
301 3lda_A DNA repair protein RAD5 94.0 0.18 6.1E-06 54.4 10.0 88 177-264 177-283 (400)
302 3fwy_A Light-independent proto 94.0 0.03 1E-06 58.4 3.7 27 176-202 46-72 (314)
303 1kag_A SKI, shikimate kinase I 94.0 0.025 8.7E-07 53.3 2.9 24 179-202 5-28 (173)
304 3trf_A Shikimate kinase, SK; a 93.9 0.029 1E-06 53.6 3.3 25 178-202 5-29 (185)
305 2i1q_A DNA repair and recombin 93.8 0.17 6E-06 53.1 9.3 88 177-264 97-214 (322)
306 3uie_A Adenylyl-sulfate kinase 93.8 0.038 1.3E-06 53.5 3.9 27 176-202 23-49 (200)
307 1pzn_A RAD51, DNA repair and r 93.8 0.12 4.2E-06 54.8 8.1 89 177-265 130-242 (349)
308 1nks_A Adenylate kinase; therm 93.7 0.034 1.1E-06 53.5 3.4 24 179-202 2-25 (194)
309 2rhm_A Putative kinase; P-loop 93.7 0.038 1.3E-06 53.1 3.7 26 177-202 4-29 (193)
310 3tau_A Guanylate kinase, GMP k 93.6 0.041 1.4E-06 53.7 3.9 26 177-202 7-32 (208)
311 3tqc_A Pantothenate kinase; bi 93.6 0.073 2.5E-06 55.4 5.9 45 158-202 70-116 (321)
312 2wsm_A Hydrogenase expression/ 93.6 0.055 1.9E-06 53.3 4.8 42 159-202 13-54 (221)
313 3t61_A Gluconokinase; PSI-biol 93.6 0.03 1E-06 54.5 2.7 25 178-202 18-42 (202)
314 4a1f_A DNAB helicase, replicat 93.6 0.14 4.6E-06 53.8 7.8 39 177-218 45-83 (338)
315 2r6a_A DNAB helicase, replicat 93.6 0.8 2.7E-05 50.5 14.6 40 177-218 202-241 (454)
316 4eun_A Thermoresistant glucoki 93.5 0.042 1.4E-06 53.3 3.7 26 177-202 28-53 (200)
317 3iij_A Coilin-interacting nucl 93.5 0.034 1.1E-06 52.9 2.9 25 178-202 11-35 (180)
318 1ex7_A Guanylate kinase; subst 93.5 0.026 9E-07 53.7 2.1 24 179-202 2-25 (186)
319 1ls1_A Signal recognition part 93.5 0.17 5.9E-06 52.2 8.4 84 177-263 97-189 (295)
320 1knq_A Gluconate kinase; ALFA/ 93.5 0.043 1.5E-06 51.8 3.6 26 177-202 7-32 (175)
321 2ze6_A Isopentenyl transferase 93.5 0.04 1.4E-06 55.7 3.5 24 179-202 2-25 (253)
322 3tr0_A Guanylate kinase, GMP k 93.4 0.041 1.4E-06 53.5 3.5 25 178-202 7-31 (205)
323 2bdt_A BH3686; alpha-beta prot 93.4 0.045 1.6E-06 52.4 3.6 22 179-200 3-24 (189)
324 1via_A Shikimate kinase; struc 93.4 0.035 1.2E-06 52.4 2.7 24 179-202 5-28 (175)
325 1ye8_A Protein THEP1, hypothet 93.4 0.045 1.5E-06 51.8 3.5 23 180-202 2-24 (178)
326 2qor_A Guanylate kinase; phosp 93.3 0.04 1.4E-06 53.6 3.2 26 177-202 11-36 (204)
327 1gvn_B Zeta; postsegregational 93.3 0.086 2.9E-06 54.3 5.8 26 177-202 32-57 (287)
328 1g8p_A Magnesium-chelatase 38 93.3 0.033 1.1E-06 59.5 2.8 46 155-202 24-69 (350)
329 1zuh_A Shikimate kinase; alpha 93.3 0.045 1.5E-06 51.3 3.3 26 177-202 6-31 (168)
330 3umf_A Adenylate kinase; rossm 93.3 0.05 1.7E-06 53.2 3.7 27 176-202 27-53 (217)
331 3ch4_B Pmkase, phosphomevalona 93.3 0.17 5.8E-06 48.3 7.3 93 177-274 10-122 (202)
332 3a00_A Guanylate kinase, GMP k 93.3 0.037 1.3E-06 52.9 2.8 24 179-202 2-25 (186)
333 1ukz_A Uridylate kinase; trans 93.2 0.054 1.8E-06 52.6 4.0 27 176-202 13-39 (203)
334 2jaq_A Deoxyguanosine kinase; 93.2 0.044 1.5E-06 53.2 3.3 23 180-202 2-24 (205)
335 1y63_A LMAJ004144AAA protein; 93.2 0.051 1.8E-06 51.8 3.7 25 177-201 9-33 (184)
336 4gp7_A Metallophosphoesterase; 93.2 0.044 1.5E-06 51.6 3.1 22 178-199 9-30 (171)
337 1xjc_A MOBB protein homolog; s 93.2 0.053 1.8E-06 50.5 3.5 26 177-202 3-28 (169)
338 2c95_A Adenylate kinase 1; tra 93.2 0.05 1.7E-06 52.4 3.6 26 177-202 8-33 (196)
339 1uf9_A TT1252 protein; P-loop, 93.1 0.057 2E-06 52.3 3.9 26 176-201 6-31 (203)
340 2yvu_A Probable adenylyl-sulfa 93.1 0.057 1.9E-06 51.6 3.7 26 177-202 12-37 (186)
341 2qt1_A Nicotinamide riboside k 93.1 0.057 1.9E-06 52.6 3.8 27 176-202 19-45 (207)
342 1tev_A UMP-CMP kinase; ploop, 93.1 0.053 1.8E-06 52.1 3.6 25 178-202 3-27 (196)
343 3asz_A Uridine kinase; cytidin 93.1 0.055 1.9E-06 52.9 3.7 26 177-202 5-30 (211)
344 1lvg_A Guanylate kinase, GMP k 93.0 0.043 1.5E-06 53.1 2.9 24 179-202 5-28 (198)
345 2j41_A Guanylate kinase; GMP, 93.0 0.057 1.9E-06 52.5 3.8 25 178-202 6-30 (207)
346 2if2_A Dephospho-COA kinase; a 93.0 0.051 1.7E-06 52.8 3.4 22 179-200 2-23 (204)
347 2iyv_A Shikimate kinase, SK; t 93.0 0.039 1.3E-06 52.6 2.5 24 179-202 3-26 (184)
348 3ney_A 55 kDa erythrocyte memb 93.0 0.055 1.9E-06 51.9 3.4 26 177-202 18-43 (197)
349 1g41_A Heat shock protein HSLU 93.0 0.073 2.5E-06 57.9 4.8 48 155-202 15-74 (444)
350 3p32_A Probable GTPase RV1496/ 93.0 0.11 3.8E-06 55.4 6.2 39 164-202 65-103 (355)
351 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.059 2E-06 54.7 3.8 25 178-202 4-28 (260)
352 1cke_A CK, MSSA, protein (cyti 92.9 0.056 1.9E-06 53.5 3.5 24 179-202 6-29 (227)
353 3rlf_A Maltose/maltodextrin im 92.9 0.11 3.9E-06 55.2 6.0 25 178-202 29-53 (381)
354 3cm0_A Adenylate kinase; ATP-b 92.8 0.059 2E-06 51.4 3.5 24 179-202 5-28 (186)
355 2bwj_A Adenylate kinase 5; pho 92.8 0.055 1.9E-06 52.2 3.2 25 178-202 12-36 (199)
356 1e6c_A Shikimate kinase; phosp 92.8 0.05 1.7E-06 51.2 2.8 24 179-202 3-26 (173)
357 2p5t_B PEZT; postsegregational 92.7 0.089 3E-06 53.1 4.8 41 162-202 13-56 (253)
358 1jjv_A Dephospho-COA kinase; P 92.7 0.063 2.1E-06 52.3 3.5 22 179-200 3-24 (206)
359 2plr_A DTMP kinase, probable t 92.7 0.062 2.1E-06 52.5 3.5 24 179-202 5-28 (213)
360 1pgv_A TMD-1, tropomodulin TMD 92.7 0.065 2.2E-06 51.2 3.4 107 522-629 39-167 (197)
361 2cdn_A Adenylate kinase; phosp 92.7 0.07 2.4E-06 51.7 3.8 26 177-202 19-44 (201)
362 1zu4_A FTSY; GTPase, signal re 92.6 0.16 5.6E-06 53.0 6.8 39 177-218 104-142 (320)
363 1tue_A Replication protein E1; 92.6 0.095 3.3E-06 50.1 4.4 38 164-202 45-82 (212)
364 1uj2_A Uridine-cytidine kinase 92.6 0.071 2.4E-06 53.8 3.8 27 176-202 20-46 (252)
365 2bbw_A Adenylate kinase 4, AK4 92.5 0.068 2.3E-06 53.8 3.6 25 178-202 27-51 (246)
366 2vli_A Antibiotic resistance p 92.5 0.046 1.6E-06 52.0 2.2 25 178-202 5-29 (183)
367 3vr4_D V-type sodium ATPase su 92.5 0.12 3.9E-06 55.9 5.5 83 180-265 153-259 (465)
368 2pt5_A Shikimate kinase, SK; a 92.5 0.071 2.4E-06 49.8 3.5 23 180-202 2-24 (168)
369 1qf9_A UMP/CMP kinase, protein 92.5 0.068 2.3E-06 51.2 3.4 25 178-202 6-30 (194)
370 3l0o_A Transcription terminati 92.4 0.39 1.3E-05 50.6 9.0 51 166-218 164-214 (427)
371 1htw_A HI0065; nucleotide-bind 92.4 0.079 2.7E-06 48.9 3.6 26 177-202 32-57 (158)
372 1znw_A Guanylate kinase, GMP k 92.4 0.069 2.4E-06 52.0 3.3 26 177-202 19-44 (207)
373 3aez_A Pantothenate kinase; tr 92.4 0.08 2.7E-06 55.1 4.0 27 176-202 88-114 (312)
374 1aky_A Adenylate kinase; ATP:A 92.3 0.074 2.5E-06 52.4 3.5 25 178-202 4-28 (220)
375 2jeo_A Uridine-cytidine kinase 92.2 0.086 2.9E-06 52.9 3.9 26 177-202 24-49 (245)
376 2pbr_A DTMP kinase, thymidylat 92.2 0.077 2.6E-06 50.9 3.4 23 180-202 2-24 (195)
377 1z6g_A Guanylate kinase; struc 92.2 0.064 2.2E-06 52.8 2.8 25 178-202 23-47 (218)
378 2grj_A Dephospho-COA kinase; T 92.2 0.084 2.9E-06 50.6 3.6 27 176-202 10-36 (192)
379 4akg_A Glutathione S-transfera 92.2 0.55 1.9E-05 62.5 12.2 24 179-202 1268-1291(2695)
380 1zd8_A GTP:AMP phosphotransfer 92.2 0.076 2.6E-06 52.6 3.4 25 178-202 7-31 (227)
381 1rj9_A FTSY, signal recognitio 92.1 0.09 3.1E-06 54.5 3.9 26 177-202 101-126 (304)
382 1nn5_A Similar to deoxythymidy 92.1 0.084 2.9E-06 51.7 3.5 25 178-202 9-33 (215)
383 2wwf_A Thymidilate kinase, put 92.1 0.08 2.7E-06 51.7 3.4 25 178-202 10-34 (212)
384 4e22_A Cytidylate kinase; P-lo 92.0 0.089 3E-06 53.1 3.8 26 177-202 26-51 (252)
385 1s96_A Guanylate kinase, GMP k 92.0 0.091 3.1E-06 51.6 3.7 26 177-202 15-40 (219)
386 2j37_W Signal recognition part 92.0 0.64 2.2E-05 51.6 10.8 26 177-202 100-125 (504)
387 2v3c_C SRP54, signal recogniti 92.0 0.13 4.3E-06 56.2 5.1 25 178-202 99-123 (432)
388 3e1s_A Exodeoxyribonuclease V, 91.9 0.39 1.3E-05 54.6 9.3 25 178-202 204-228 (574)
389 3b9q_A Chloroplast SRP recepto 91.9 0.17 5.9E-06 52.3 5.9 26 177-202 99-124 (302)
390 3fb4_A Adenylate kinase; psych 91.9 0.082 2.8E-06 51.8 3.3 23 180-202 2-24 (216)
391 3cf2_A TER ATPase, transitiona 91.9 0.18 6E-06 59.2 6.5 94 155-265 477-581 (806)
392 1zak_A Adenylate kinase; ATP:A 91.9 0.076 2.6E-06 52.4 3.0 26 177-202 4-29 (222)
393 2v54_A DTMP kinase, thymidylat 91.8 0.092 3.1E-06 50.9 3.5 25 178-202 4-28 (204)
394 2z0h_A DTMP kinase, thymidylat 91.8 0.088 3E-06 50.7 3.3 23 180-202 2-24 (197)
395 3dl0_A Adenylate kinase; phosp 91.8 0.088 3E-06 51.6 3.4 23 180-202 2-24 (216)
396 2pez_A Bifunctional 3'-phospho 91.8 0.11 3.7E-06 49.2 3.8 26 177-202 4-29 (179)
397 2i3b_A HCR-ntpase, human cance 91.6 0.085 2.9E-06 50.4 2.9 23 180-202 3-25 (189)
398 1gtv_A TMK, thymidylate kinase 91.6 0.05 1.7E-06 53.3 1.2 23 180-202 2-24 (214)
399 1m7g_A Adenylylsulfate kinase; 91.5 0.11 3.8E-06 50.7 3.7 26 177-202 24-49 (211)
400 2f1r_A Molybdopterin-guanine d 91.5 0.064 2.2E-06 50.3 1.8 24 179-202 3-26 (171)
401 2onk_A Molybdate/tungstate ABC 91.5 0.11 3.7E-06 51.8 3.6 26 176-202 23-48 (240)
402 2f6r_A COA synthase, bifunctio 91.5 0.12 4E-06 53.1 3.9 23 177-199 74-96 (281)
403 3d3q_A TRNA delta(2)-isopenten 91.4 0.11 3.6E-06 54.4 3.5 24 179-202 8-31 (340)
404 1vht_A Dephospho-COA kinase; s 91.4 0.13 4.3E-06 50.6 4.0 23 178-200 4-26 (218)
405 1np6_A Molybdopterin-guanine d 91.3 0.12 4.1E-06 48.6 3.5 26 177-202 5-30 (174)
406 1sq5_A Pantothenate kinase; P- 91.3 0.22 7.7E-06 51.8 6.0 27 176-202 78-104 (308)
407 2og2_A Putative signal recogni 91.2 0.23 7.9E-06 52.6 6.0 26 177-202 156-181 (359)
408 3exa_A TRNA delta(2)-isopenten 91.2 0.13 4.5E-06 52.8 3.9 25 178-202 3-27 (322)
409 3nwj_A ATSK2; P loop, shikimat 91.2 0.095 3.3E-06 52.5 2.8 24 179-202 49-72 (250)
410 3bgw_A DNAB-like replicative h 91.1 0.39 1.3E-05 52.7 8.0 46 177-225 196-245 (444)
411 3r20_A Cytidylate kinase; stru 91.1 0.12 4E-06 51.1 3.3 25 178-202 9-33 (233)
412 2q6t_A DNAB replication FORK h 91.1 0.56 1.9E-05 51.6 9.2 40 177-218 199-238 (444)
413 3a8t_A Adenylate isopentenyltr 91.1 0.14 4.7E-06 53.3 4.0 26 177-202 39-64 (339)
414 3crm_A TRNA delta(2)-isopenten 90.9 0.13 4.3E-06 53.4 3.6 25 178-202 5-29 (323)
415 2pcj_A ABC transporter, lipopr 90.9 0.11 3.7E-06 51.3 3.0 25 178-202 30-54 (224)
416 3tif_A Uncharacterized ABC tra 90.9 0.11 3.8E-06 51.6 3.0 26 177-202 30-55 (235)
417 3lnc_A Guanylate kinase, GMP k 90.9 0.082 2.8E-06 52.5 2.1 25 178-202 27-52 (231)
418 1svm_A Large T antigen; AAA+ f 90.9 0.25 8.5E-06 52.7 5.9 37 166-202 157-193 (377)
419 3cmu_A Protein RECA, recombina 90.8 0.38 1.3E-05 61.8 8.3 85 177-264 1426-1515(2050)
420 3ake_A Cytidylate kinase; CMP 90.8 0.13 4.5E-06 49.9 3.4 23 180-202 4-26 (208)
421 2xb4_A Adenylate kinase; ATP-b 90.7 0.13 4.4E-06 50.8 3.3 23 180-202 2-24 (223)
422 3be4_A Adenylate kinase; malar 90.7 0.13 4.3E-06 50.6 3.2 24 179-202 6-29 (217)
423 1ak2_A Adenylate kinase isoenz 90.7 0.14 4.9E-06 50.8 3.7 26 177-202 15-40 (233)
424 3b85_A Phosphate starvation-in 90.7 0.11 3.6E-06 50.6 2.6 23 179-201 23-45 (208)
425 3end_A Light-independent proto 90.6 0.18 6.2E-06 52.5 4.5 40 176-218 39-78 (307)
426 1e4v_A Adenylate kinase; trans 90.6 0.13 4.4E-06 50.3 3.2 23 180-202 2-24 (214)
427 1u0j_A DNA replication protein 90.5 0.27 9.2E-06 49.3 5.4 39 164-202 90-128 (267)
428 3k1j_A LON protease, ATP-depen 90.5 0.19 6.4E-06 57.9 4.9 43 156-202 42-84 (604)
429 3gfo_A Cobalt import ATP-bindi 90.4 0.13 4.5E-06 52.3 3.1 25 178-202 34-58 (275)
430 1oix_A RAS-related protein RAB 90.4 0.15 5.2E-06 48.8 3.4 25 178-202 29-53 (191)
431 3foz_A TRNA delta(2)-isopenten 90.3 0.19 6.4E-06 51.5 4.1 26 177-202 9-34 (316)
432 2r8r_A Sensor protein; KDPD, P 90.3 0.22 7.6E-06 48.5 4.4 24 179-202 7-30 (228)
433 1b0u_A Histidine permease; ABC 90.3 0.14 4.6E-06 51.9 3.1 26 177-202 31-56 (262)
434 1yrb_A ATP(GTP)binding protein 90.3 0.16 5.6E-06 51.4 3.7 27 176-202 12-38 (262)
435 1q57_A DNA primase/helicase; d 90.3 0.85 2.9E-05 51.1 10.0 40 177-218 241-280 (503)
436 1tq4_A IIGP1, interferon-induc 90.2 0.17 5.9E-06 54.6 3.9 36 166-201 57-92 (413)
437 1sgw_A Putative ABC transporte 90.1 0.12 4.2E-06 50.4 2.5 24 179-202 36-59 (214)
438 3oaa_A ATP synthase subunit al 90.1 0.79 2.7E-05 50.0 8.9 83 179-265 163-265 (513)
439 2d2e_A SUFC protein; ABC-ATPas 90.1 0.16 5.4E-06 51.1 3.3 24 178-201 29-52 (250)
440 1ji0_A ABC transporter; ATP bi 90.1 0.14 4.9E-06 51.0 3.0 25 178-202 32-56 (240)
441 2dyk_A GTP-binding protein; GT 90.1 0.19 6.5E-06 46.2 3.7 24 179-202 2-25 (161)
442 2olj_A Amino acid ABC transpor 90.1 0.15 5E-06 51.6 3.1 26 177-202 49-74 (263)
443 1a7j_A Phosphoribulokinase; tr 90.0 0.099 3.4E-06 53.9 1.8 26 177-202 4-29 (290)
444 4g1u_C Hemin import ATP-bindin 90.0 0.15 5E-06 51.8 3.1 25 178-202 37-61 (266)
445 2pze_A Cystic fibrosis transme 90.0 0.15 5.2E-06 50.4 3.1 25 178-202 34-58 (229)
446 1g6h_A High-affinity branched- 90.0 0.15 5E-06 51.6 3.0 25 178-202 33-57 (257)
447 2zu0_C Probable ATP-dependent 90.0 0.17 5.6E-06 51.5 3.4 25 177-201 45-69 (267)
448 3gqb_B V-type ATP synthase bet 89.9 0.21 7.2E-06 53.9 4.2 86 179-265 148-262 (464)
449 2wji_A Ferrous iron transport 89.9 0.18 6.2E-06 46.8 3.4 23 179-201 4-26 (165)
450 1mv5_A LMRA, multidrug resista 89.9 0.16 5.6E-06 50.7 3.2 26 177-202 27-52 (243)
451 1fx0_A ATP synthase alpha chai 89.9 0.75 2.6E-05 50.3 8.6 82 179-265 164-266 (507)
452 1vpl_A ABC transporter, ATP-bi 89.8 0.16 5.4E-06 51.2 3.1 26 177-202 40-65 (256)
453 2qmh_A HPR kinase/phosphorylas 89.8 0.18 6.3E-06 47.8 3.3 25 178-202 34-58 (205)
454 2c61_A A-type ATP synthase non 89.8 0.33 1.1E-05 52.8 5.7 85 179-264 153-259 (469)
455 2ff7_A Alpha-hemolysin translo 89.8 0.16 5.4E-06 50.9 3.0 25 178-202 35-59 (247)
456 2f9l_A RAB11B, member RAS onco 89.8 0.17 5.8E-06 48.7 3.2 25 178-202 5-29 (199)
457 1ltq_A Polynucleotide kinase; 89.7 0.18 6.3E-06 52.2 3.6 23 179-201 3-25 (301)
458 2zej_A Dardarin, leucine-rich 89.7 0.15 5.2E-06 48.4 2.7 22 180-201 4-25 (184)
459 3cmw_A Protein RECA, recombina 89.7 0.5 1.7E-05 59.9 8.0 82 179-263 384-470 (1706)
460 3cmu_A Protein RECA, recombina 89.6 0.54 1.9E-05 60.4 8.3 86 177-265 382-472 (2050)
461 2qi9_C Vitamin B12 import ATP- 89.6 0.17 5.8E-06 50.7 3.1 25 178-202 26-50 (249)
462 2eyu_A Twitching motility prot 89.6 0.19 6.6E-06 50.7 3.6 105 176-294 23-135 (261)
463 3zvl_A Bifunctional polynucleo 89.6 0.2 6.8E-06 54.6 3.9 27 176-202 256-282 (416)
464 2ghi_A Transport protein; mult 89.5 0.17 5.8E-06 51.2 3.0 25 178-202 46-70 (260)
465 2ixe_A Antigen peptide transpo 89.5 0.17 5.8E-06 51.5 3.0 26 177-202 44-69 (271)
466 1cp2_A CP2, nitrogenase iron p 89.4 0.29 9.9E-06 49.8 4.8 37 179-218 2-38 (269)
467 2yhs_A FTSY, cell division pro 89.4 0.22 7.5E-06 54.6 4.0 26 177-202 292-317 (503)
468 2nq2_C Hypothetical ABC transp 89.3 0.18 6.1E-06 50.7 3.0 25 178-202 31-55 (253)
469 2ihy_A ABC transporter, ATP-bi 89.3 0.18 6.2E-06 51.5 3.1 25 178-202 47-71 (279)
470 3b5x_A Lipid A export ATP-bind 89.3 0.66 2.3E-05 53.0 8.2 26 177-202 368-393 (582)
471 1ypw_A Transitional endoplasmi 89.3 0.089 3E-06 62.7 0.9 48 155-202 477-535 (806)
472 2yz2_A Putative ABC transporte 89.3 0.18 6.1E-06 51.2 3.0 25 178-202 33-57 (266)
473 2v9p_A Replication protein E1; 89.2 0.22 7.5E-06 51.3 3.6 27 176-202 124-150 (305)
474 4eaq_A DTMP kinase, thymidylat 89.1 0.25 8.5E-06 48.8 3.9 26 177-202 25-50 (229)
475 2ce2_X GTPase HRAS; signaling 89.0 0.21 7.1E-06 46.0 3.1 23 180-202 5-27 (166)
476 2p67_A LAO/AO transport system 89.0 0.46 1.6E-05 50.2 6.1 27 176-202 54-80 (341)
477 3f9v_A Minichromosome maintena 89.0 0.13 4.4E-06 58.9 1.9 48 155-202 295-351 (595)
478 1fzq_A ADP-ribosylation factor 89.0 0.26 9E-06 46.5 3.8 26 176-201 14-39 (181)
479 2wjg_A FEOB, ferrous iron tran 88.8 0.26 8.9E-06 46.7 3.7 24 178-201 7-30 (188)
480 1z2a_A RAS-related protein RAB 88.8 0.23 7.8E-06 46.0 3.2 25 178-202 5-29 (168)
481 2qe7_A ATP synthase subunit al 88.8 1.1 3.8E-05 48.9 8.9 93 167-265 152-265 (502)
482 3sop_A Neuronal-specific septi 88.7 0.22 7.6E-06 50.6 3.3 23 180-202 4-26 (270)
483 2orv_A Thymidine kinase; TP4A 88.7 0.46 1.6E-05 46.3 5.3 105 178-292 19-126 (234)
484 1q3t_A Cytidylate kinase; nucl 88.7 0.26 9E-06 49.0 3.8 26 177-202 15-40 (236)
485 2afh_E Nitrogenase iron protei 88.7 0.31 1.1E-05 50.2 4.4 38 178-218 2-39 (289)
486 2qm8_A GTPase/ATPase; G protei 88.7 0.42 1.4E-05 50.4 5.4 27 176-202 53-79 (337)
487 3upu_A ATP-dependent DNA helic 88.6 1 3.5E-05 49.8 8.8 66 159-229 29-95 (459)
488 2vp4_A Deoxynucleoside kinase; 88.6 0.22 7.5E-06 49.3 3.1 26 176-201 18-43 (230)
489 2ocp_A DGK, deoxyguanosine kin 88.6 0.26 9E-06 49.1 3.7 25 178-202 2-26 (241)
490 3eph_A TRNA isopentenyltransfe 88.6 0.23 7.9E-06 52.9 3.3 24 179-202 3-26 (409)
491 2lkc_A Translation initiation 88.5 0.31 1.1E-05 45.6 4.0 27 176-202 6-32 (178)
492 3con_A GTPase NRAS; structural 88.5 0.24 8.2E-06 47.1 3.2 24 179-202 22-45 (190)
493 2r9v_A ATP synthase subunit al 88.4 0.73 2.5E-05 50.4 7.2 82 179-265 176-278 (515)
494 2ged_A SR-beta, signal recogni 88.4 0.35 1.2E-05 46.0 4.4 26 177-202 47-72 (193)
495 2nzj_A GTP-binding protein REM 88.4 0.24 8.2E-06 46.2 3.1 25 178-202 4-28 (175)
496 1nlf_A Regulatory protein REPA 88.4 0.23 7.9E-06 50.8 3.2 26 177-202 29-54 (279)
497 2pjz_A Hypothetical protein ST 88.4 0.23 7.9E-06 50.2 3.1 24 178-201 30-53 (263)
498 1g8f_A Sulfate adenylyltransfe 88.3 0.33 1.1E-05 53.9 4.4 45 158-202 375-419 (511)
499 1cr0_A DNA primase/helicase; R 88.2 0.24 8.3E-06 51.2 3.3 26 177-202 34-59 (296)
500 2gj8_A MNME, tRNA modification 88.1 0.26 8.8E-06 46.2 3.1 24 179-202 5-28 (172)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.3e-46 Score=427.73 Aligned_cols=303 Identities=16% Similarity=0.196 Sum_probs=241.2
Q ss_pred CCcccchHHHHHHHHHHhhcC-CCCceEEEEEcCCCCcHHHHHHHHHh--ccccccCCCCEEEEEEec--------chHH
Q 046470 154 DHTVVGQELLLYRVWKCITDQ-DKNRGIIGLYGIGGVGKTTLLTQVNN--NFCHEQHHFDVVIWAAVS--------TLQD 222 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~--------~l~~ 222 (888)
.+..|||+.++++|.++|... +...++|+|+||||+||||||+++|+ +. +++.+|++++||+++ .++.
T Consensus 127 ~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 127 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 334369999999999999764 34689999999999999999999998 44 568899999999987 3567
Q ss_pred HHHHHcCCChh-----hhcCCCHHHHHHHHHHHhccC-cEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhhhh
Q 046470 223 DIGKRIGFSEN-----WWKKKSPEEKAVDISSILSRK-EFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDVCD 296 (888)
Q Consensus 223 ~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 296 (888)
.|+.+++.... .....+...+...+++.|+++ ||||||||||+..++ .+ + ..+||+||||||++.|+.
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHH
Confidence 77888765421 112334567889999999996 999999999998754 11 1 127999999999999999
Q ss_pred ccC-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCChhHHHHHHHHHH
Q 046470 297 QMD-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNIGDWKRAIKKIR 374 (888)
Q Consensus 297 ~~~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~ 374 (888)
.++ .. .|+|++|+.++||+||.+.++... .++.+++++++|+++|+|+||||+++|+.|+.+ .|+.+ +.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~ 352 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLN 352 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhH
Confidence 886 43 799999999999999999987643 246778899999999999999999999999764 25543 4444
Q ss_pred hcccccCCchHHHHhhhhhccccchHHHHHHHh-----------hhccCCCCccccHHHHHHHHHHc--CCCcCcc----
Q 046470 375 TSASKFSGMEEKVFSRLKFSYDSLSDELRSCLL-----------YCCLYPEDYKISKRELIDYWISE--GFVDDFD---- 437 (888)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~w~a~--g~~~~~~---- 437 (888)
...+... .+.+..++.+||++||.++|.||+ |||+||+++.|+ +++|+|+ ||+....
T Consensus 353 ~~l~~~~--~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 353 NKLESRG--LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHHHC--SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred HHhhccc--HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 4332211 135889999999999999999999 999999999999 8999999 9997653
Q ss_pred --hhHHHHHHHHHhcccccc---CCcchhhhhHHHHHHHHHHhh
Q 046470 438 --DGWEFINDLLHACLLEEE---GDDHVKMHDMIREMSLWVACT 476 (888)
Q Consensus 438 --~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~~~~~ 476 (888)
++.+|+++|+++||++.. ...+|+|||+||++|+.++.+
T Consensus 427 ~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 427 DDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp THHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 244599999999999986 345799999999999988754
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.5e-39 Score=371.71 Aligned_cols=280 Identities=18% Similarity=0.256 Sum_probs=223.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCE-EEEEEec------chHHHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDV-VIWAAVS------TLQDDIGKR 227 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~------~l~~~i~~~ 227 (888)
+..|||+.++++|.++|... +..++|+|+||||+||||||+++|++. +++.+|+. ++|++++ .++..|+..
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34599999999999999863 347899999999999999999999876 56778986 9999998 445555553
Q ss_pred cCCCh---h-hhc-----CCCHHHHHHHHHHHh---ccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhhh
Q 046470 228 IGFSE---N-WWK-----KKSPEEKAVDISSIL---SRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDVC 295 (888)
Q Consensus 228 l~~~~---~-~~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 295 (888)
++... . ... ..+.+.+...+++.| .+||+||||||||+.+.|+.+ ..||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHH
Confidence 32110 0 000 012345566677766 679999999999998888764 1689999999999998
Q ss_pred hccCCc-eeEcC------CCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCC-ChhHHH
Q 046470 296 DQMDAE-KVEVS------CLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRS-NIGDWK 367 (888)
Q Consensus 296 ~~~~~~-~~~l~------~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~-~~~~w~ 367 (888)
..+... .+.++ +|+.+|||+||.+..+.. ..++..+| |+|+||||+++|+.|+.+. +.++|+
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 755444 66777 999999999999985321 13344444 9999999999999999873 677887
Q ss_pred HHHHHHHhcccccCCchHHHHhhhhhccccchHHH-HHHHhhhccCCCCccccHHHHHHHHHHcCCCcCcchhHHHHHHH
Q 046470 368 RAIKKIRTSASKFSGMEEKVFSRLKFSYDSLSDEL-RSCLLYCCLYPEDYKISKRELIDYWISEGFVDDFDDGWEFINDL 446 (888)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~l~~L 446 (888)
.. . .+.+..+|.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ...+..++++|
T Consensus 349 ~~------------~-~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----eedAe~~L~eL 411 (1221)
T 1vt4_I 349 HV------------N-CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDVMVVVNKL 411 (1221)
T ss_dssp HC------------S-CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----SHHHHHHHHHH
T ss_pred cC------------C-hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----HHHHHHHHHHH
Confidence 52 1 2579999999999999998 99999999999999999999999999988 23488999999
Q ss_pred HHhcccccc-CCcchhhhhHHHHHH
Q 046470 447 LHACLLEEE-GDDHVKMHDMIREMS 470 (888)
Q Consensus 447 ~~~~ll~~~-~~~~~~mHdlv~~~a 470 (888)
+++||++.. ...+|+|||++++++
T Consensus 412 vdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 412 HKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HhhCCEEEeCCCCEEEehHHHHHHh
Confidence 999999986 467899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-37 Score=398.22 Aligned_cols=305 Identities=20% Similarity=0.336 Sum_probs=249.2
Q ss_pred CCcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccC-CCCEEEEEEec--------chHHHH
Q 046470 154 DHTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQH-HFDVVIWAAVS--------TLQDDI 224 (888)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~--------~l~~~i 224 (888)
.+.||||++++++|.++|...++..++|+|+||||+||||||+++|++...... .|+.++||+++ ..+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 356999999999999999765577899999999999999999999998622234 56788899998 234556
Q ss_pred HHHcCCChh--hhcCCCHHHHHHHHHHHhccC--cEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhhhhc-cC
Q 046470 225 GKRIGFSEN--WWKKKSPEEKAVDISSILSRK--EFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDVCDQ-MD 299 (888)
Q Consensus 225 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-~~ 299 (888)
+..++.... .....+.+.+...++..+.++ |+||||||||+..+|..+ .+||+||||||++.++.. ++
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCS
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcC
Confidence 666654321 113456788888999999877 999999999998877754 578999999999999855 44
Q ss_pred Cc-eeEcCC-CChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCChhHHHHHHHHHHhcc
Q 046470 300 AE-KVEVSC-LAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNIGDWKRAIKKIRTSA 377 (888)
Q Consensus 300 ~~-~~~l~~-L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 377 (888)
.. .+++.+ |+.+||++||...++.. .+..++++++|+++|+|+||||+++|++|+.+. .+|+..++.+....
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 44 889996 99999999999988543 244567899999999999999999999999864 47999999887654
Q ss_pred ccc-----CCchHHHHhhhhhccccchHHHHHHHhhhccCCCCccccHHHHHHHHHHcCCCcCcchhHHHHHHHHHhccc
Q 046470 378 SKF-----SGMEEKVFSRLKFSYDSLSDELRSCLLYCCLYPEDYKISKRELIDYWISEGFVDDFDDGWEFINDLLHACLL 452 (888)
Q Consensus 378 ~~~-----~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~l~~L~~~~ll 452 (888)
+.. ....+.+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.+++ ..+++++++|+++||+
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----EEVEDILQEFVNKSLL 424 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTTSC
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----HHHHHHHHHHHhccce
Confidence 321 112357999999999999999999999999999999999999999996652 4488999999999999
Q ss_pred cccCC---cchhhhhHHHHHHHHHHhh
Q 046470 453 EEEGD---DHVKMHDMIREMSLWVACT 476 (888)
Q Consensus 453 ~~~~~---~~~~mHdlv~~~a~~~~~~ 476 (888)
+.... .+|+||+++|++++..+.+
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhH
Confidence 97633 3599999999999987654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=343.86 Aligned_cols=301 Identities=21% Similarity=0.347 Sum_probs=238.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccc-cCCC-CEEEEEEec-----chHHHH---
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHE-QHHF-DVVIWAAVS-----TLQDDI--- 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~~-----~l~~~i--- 224 (888)
+.||||+.++++|.++|...++..++|+|+||||+||||||++++++. .. ..+| +.++|++++ .+...+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l 202 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQDKSGLLMKLQNL 202 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCCHHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCchHHHHHHHHHH
Confidence 568999999999999998654668999999999999999999999886 43 5678 589999987 223333
Q ss_pred HHHcCCCh--hhhcCCCHHHHHHHHHHHhcc--CcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhhhhccCC
Q 046470 225 GKRIGFSE--NWWKKKSPEEKAVDISSILSR--KEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDVCDQMDA 300 (888)
Q Consensus 225 ~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 300 (888)
+..++... ......+.+.....+.+.+.+ +++||||||+|+...+..+ ..|++||||||+..++..++.
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~~ 275 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMG 275 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCCS
T ss_pred HHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcCC
Confidence 33443211 011345667788888888877 7899999999987666532 468999999999999877654
Q ss_pred ceeEc---CCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHhccCCChhHHHHHHHHHHhcc
Q 046470 301 EKVEV---SCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAMKSRSNIGDWKRAIKKIRTSA 377 (888)
Q Consensus 301 ~~~~l---~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 377 (888)
..+++ ++|+.+||++||.+.++... +...+.+.+|+++|+|+||||..+|+.++.+. .+|...++.+....
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQ 349 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhH
Confidence 44444 58999999999999987522 22246789999999999999999999998753 47999888887653
Q ss_pred cc-c----CCchHHHHhhhhhccccchHHHHHHHhhhccCCCCccccHHHHHHHHHHcCCCcCcchhHHHHHHHHHhccc
Q 046470 378 SK-F----SGMEEKVFSRLKFSYDSLSDELRSCLLYCCLYPEDYKISKRELIDYWISEGFVDDFDDGWEFINDLLHACLL 452 (888)
Q Consensus 378 ~~-~----~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~l~~L~~~~ll 452 (888)
.. . ......+..++..||+.||++.|.||++||+||+++.|+.+.++..|.++ ...+..++++|+++||+
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----~~~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----TEEVEDILQEFVNKSLL 424 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----HHHHHHHHHHHHHTTSS
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----HHHHHHHHHHHHhCcCe
Confidence 21 1 11234799999999999999999999999999999999999999999653 23478899999999999
Q ss_pred ccc---CCcchhhhhHHHHHHHHHH
Q 046470 453 EEE---GDDHVKMHDMIREMSLWVA 474 (888)
Q Consensus 453 ~~~---~~~~~~mHdlv~~~a~~~~ 474 (888)
+.. ...+|+||+++|++++...
T Consensus 425 ~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 425 FCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEEETTEEEEECCHHHHHHHHHHT
T ss_pred EEecCCCccEEEEcHHHHHHHHhhh
Confidence 865 2347999999999998763
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4.3e-25 Score=241.35 Aligned_cols=290 Identities=20% Similarity=0.260 Sum_probs=210.5
Q ss_pred CcccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCE
Q 046470 496 PAVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHH 575 (888)
Q Consensus 496 ~~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 575 (888)
.....++++++|++.++.+..++.+..+++|++|++++|.++.+++ |..+++|++|++++|.++.+| .++.+++|++
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred ccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 3445677888888988888888888888889999998888887776 788889999999998888876 6888889999
Q ss_pred EeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHh
Q 046470 576 LDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKEL 655 (888)
Q Consensus 576 L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 655 (888)
|++++|.++.+|. +..+++|++|++++|.....++. +..+++|++|++.+|..... ..+
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~------------------~~~ 173 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV------------------TPI 173 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC------------------GGG
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc------------------hhh
Confidence 9999888888876 88888899999988876666655 78888899998888876532 116
Q ss_pred hcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCcccccc
Q 046470 656 LGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKL 735 (888)
Q Consensus 656 ~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~ 735 (888)
..+++|+.|+++.+.......+. ....++.+.+.++....... +..+++|++|++++|.+..+.+ +
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~------ 239 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L------ 239 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGGGG----GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G------
T ss_pred ccCCCCCEEEccCCccccccccc----CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h------
Confidence 67788888888776654443322 23467777777766543333 6677888888888877765432 1
Q ss_pred ccccCCCccEEEEecCCCCCCCchhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeecccccccc
Q 046470 736 FQSGFRSLSIVSVENCEKMKDLTWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLK 815 (888)
Q Consensus 736 ~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~ 815 (888)
..+++|+.|++++| .++.++.+..+++|+.|++++|. +++++ ....+++|+.|++++|. +.
T Consensus 240 --~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--------------~~~~l~~L~~L~L~~n~-l~ 300 (347)
T 4fmz_A 240 --ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS--------------VLNNLSQLNSLFLNNNQ-LG 300 (347)
T ss_dssp --TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG--------------GGGGCTTCSEEECCSSC-CC
T ss_pred --hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCCh--------------hhcCCCCCCEEECcCCc-CC
Confidence 25778888888887 46666777778888888888763 54441 34567788888888774 43
Q ss_pred ccC-CCCCCCCCccEEEecCCCCCCCCCC
Q 046470 816 SIY-PNPLPFPKLKKIQIYSCPELKKLPL 843 (888)
Q Consensus 816 ~i~-~~~~~~p~L~~L~i~~C~~L~~lP~ 843 (888)
... .....+|+|+.|++.+|+ ++.+|.
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred CcChhHhhccccCCEEEccCCc-cccccC
Confidence 332 233457788888888875 555544
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3.4e-24 Score=234.22 Aligned_cols=293 Identities=16% Similarity=0.243 Sum_probs=239.6
Q ss_pred cCcccccCCcccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhh
Q 046470 488 TGFRLTEAPAVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGI 567 (888)
Q Consensus 488 ~~~~~~~~~~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i 567 (888)
.+......+.+..++++++|++++|.+..++.+..+++|++|++++|.++.++. |..+++|++|++++|.++.+|. +
T Consensus 52 ~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~ 128 (347)
T 4fmz_A 52 AGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-L 128 (347)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-G
T ss_pred eCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-h
Confidence 344445566778889999999999999998889999999999999999988753 8999999999999999999876 9
Q ss_pred hcccCCCEEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccc
Q 046470 568 SSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDD 647 (888)
Q Consensus 568 ~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 647 (888)
..+++|++|++++|.....+..+..+++|++|++++|.. ..++. +..+++|++|++++|.....
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~--~~~l~~L~~L~l~~n~l~~~------------- 192 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTP--IANLTDLYSLSLNYNQIEDI------------- 192 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECTTSCCCCC-------------
T ss_pred ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchh--hccCCCCCEEEccCCccccc-------------
Confidence 999999999999995555445599999999999999976 55665 78999999999999977532
Q ss_pred hhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeec
Q 046470 648 AGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRID 727 (888)
Q Consensus 648 ~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~ 727 (888)
..+..+++|+.++++.+.......+. ..+.++.|.+.++....... +..+++|++|++++|.+..+ .
T Consensus 193 -----~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 193 -----SPLASLTSLHYFTAYVNQITDITPVA----NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp -----GGGGGCTTCCEEECCSSCCCCCGGGG----GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred -----ccccCCCccceeecccCCCCCCchhh----cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence 12778899999999887765544322 23579999999988755544 78899999999999988754 2
Q ss_pred CCccccccccccCCCccEEEEecCCCCCCCchhhhccCcceEeeecccccchhcccccccccccccCccCccccccceee
Q 046470 728 GPEEVKKLFQSGFRSLSIVSVENCEKMKDLTWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALN 807 (888)
Q Consensus 728 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~ 807 (888)
.+ ..+++|+.|++++| .++.++.+..+++|+.|++++|. +...+. ..+..+++|+.|+
T Consensus 260 ~~--------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 260 AV--------KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDM------------EVIGGLTNLTTLF 317 (347)
T ss_dssp GG--------TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGH------------HHHHTCTTCSEEE
T ss_pred hH--------hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcCh------------hHhhccccCCEEE
Confidence 22 25899999999999 67778889999999999999976 554433 2566799999999
Q ss_pred ccccccccccCCCCCCCCCccEEEecCCC
Q 046470 808 IFNNVNLKSIYPNPLPFPKLKKIQIYSCP 836 (888)
Q Consensus 808 L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 836 (888)
+++|+ ++.++. ...+++|+.|++.+|+
T Consensus 318 L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 318 LSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccCCc-cccccC-hhhhhccceeehhhhc
Confidence 99995 666654 5668999999999985
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=5e-24 Score=236.81 Aligned_cols=290 Identities=18% Similarity=0.211 Sum_probs=226.3
Q ss_pred ccccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEE
Q 046470 500 EWEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHL 576 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L 576 (888)
.+.+++.+++.++.+..+|. +..+++|++|++++|.++.+++..|..+++|++|+|++|.++.+| ..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45789999999999998886 577899999999999999998878999999999999999999884 568999999999
Q ss_pred eccCCcccccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHh
Q 046470 577 DLSWTEITGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKEL 655 (888)
Q Consensus 577 ~L~~~~i~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 655 (888)
++++|.++.+|.. +.++++|++|++++|.+ ..++...+.++++|++|++++|..... .+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------~~ 182 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV-------------------DL 182 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBC-------------------CG
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCcc-------------------cc
Confidence 9999999999887 58999999999999977 455555589999999999999877531 24
Q ss_pred hcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCcccccc
Q 046470 656 LGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKL 735 (888)
Q Consensus 656 ~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~ 735 (888)
..+++|+.|+++.+....+ .....++.|.+.++..... .....++|+.|++++|.+... .++
T Consensus 183 ~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~l~~~--~~l------ 244 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLTDT--AWL------ 244 (390)
T ss_dssp GGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEE---ECCCCSSCCEEECCSSCCCCC--GGG------
T ss_pred ccccccceeeccccccccc-------CCCCcceEEECCCCeeeec---cccccccccEEECCCCCCccc--HHH------
Confidence 5678888888876654332 1224677888877765333 223357889999998887743 222
Q ss_pred ccccCCCccEEEEecCCCCCCC--chhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeecccccc
Q 046470 736 FQSGFRSLSIVSVENCEKMKDL--TWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVN 813 (888)
Q Consensus 736 ~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~ 813 (888)
..+++|+.|+|++|. +..+ ..+..+++|+.|+|++|. ++.++. ....+|+|+.|+|++| .
T Consensus 245 --~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------------~~~~l~~L~~L~L~~n-~ 306 (390)
T 3o6n_A 245 --LNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALNL-------------YGQPIPTLKVLDLSHN-H 306 (390)
T ss_dssp --GGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSC-CCEEEC-------------SSSCCTTCCEEECCSS-C
T ss_pred --cCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCc-CcccCc-------------ccCCCCCCCEEECCCC-c
Confidence 257889999999884 4443 357788999999998854 555533 4467889999999888 5
Q ss_pred ccccCCCCCCCCCccEEEecCCCCCCCCCCCCC
Q 046470 814 LKSIYPNPLPFPKLKKIQIYSCPELKKLPLNSS 846 (888)
Q Consensus 814 L~~i~~~~~~~p~L~~L~i~~C~~L~~lP~~~~ 846 (888)
+..++.....+++|+.|++.+|+ ++.+|....
T Consensus 307 l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~ 338 (390)
T 3o6n_A 307 LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTH 338 (390)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTT
T ss_pred ceecCccccccCcCCEEECCCCc-cceeCchhh
Confidence 77777666668899999998874 777775444
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2e-23 Score=237.29 Aligned_cols=340 Identities=18% Similarity=0.180 Sum_probs=224.8
Q ss_pred CcccccCCcccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcc-cccchHHhcCCcccEEEcCCCCCccc-C
Q 046470 489 GFRLTEAPAVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSID-EITDGFFQSMSSLRVLSLGSNALSKL-P 564 (888)
Q Consensus 489 ~~~~~~~~~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~~~i~~l-p 564 (888)
+.+...+|. -.+++++|++++|.+..++ .+..+++|++|++++|.+. .+++..|.++++|++|+|++|.++.+ |
T Consensus 19 ~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 19 NRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp SSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence 334555555 2368999999999998863 4788999999999999875 66677799999999999999999976 7
Q ss_pred hhhhcccCCCEEeccCCcccc-cCcc--cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccC
Q 046470 565 SGISSLVSLHHLDLSWTEITG-LPQE--LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEG 641 (888)
Q Consensus 565 ~~i~~L~~L~~L~L~~~~i~~-Lp~~--i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 641 (888)
..++++++|++|++++|.++. +|.. +.++++|++|++++|.+....|...+.++++|++|++++|............
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 889999999999999999987 4544 8999999999999998755557655789999999999998775421100000
Q ss_pred ---c------c----ccc-----chhhHHHHhhcCCCCceEEEEEechhhHH--hhhcCCccccceEEEEEeecCCCc--
Q 046470 642 ---N------V----LCD-----DAGLLMKELLGLKHLNFLSWSFRSSLAVQ--KFFKYPKLVSITQSVVVYQCECPL-- 699 (888)
Q Consensus 642 ---~------~----~~~-----~~~~~~~~L~~L~~L~~L~l~~~~~~~~~--~~~~~~~l~~~L~~L~l~~~~~~~-- 699 (888)
. . ... ........+..+++|+.|+++.+...... .+.... ....++.|.+.++....
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT-TTCCEEEEECTTCTTTSCC
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc-cccceeeEeeccccccccc
Confidence 0 0 000 00000111224456777777665432211 111110 01356666665543211
Q ss_pred --------cccccccc--cCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCC-c-hhhhccCcc
Q 046470 700 --------FNVLHLAY--MENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL-T-WLVFVQNLK 767 (888)
Q Consensus 700 --------~~~l~l~~--l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~ 767 (888)
.....+.. .++|+.|++++|.+..+.+..+. .+++|+.|+|++|. +..+ + .+..+++|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS--------HFTDLEQLTLAQNE-INKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT--------TCTTCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcc--------cCCCCCEEECCCCc-ccccChhHhcCcccCC
Confidence 01111222 25788888888877766555543 57788888888874 4443 2 567788888
Q ss_pred eEeeecccccchhcccccccccccccCccCccccccceeecccccccccc-CCCCCCCCCccEEEecCCCCCCCCCCCCC
Q 046470 768 ELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSI-YPNPLPFPKLKKIQIYSCPELKKLPLNSS 846 (888)
Q Consensus 768 ~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lP~~~~ 846 (888)
+|+|++|. ++.++. ..+..+++|++|+|++| .++.+ +.....+++|+.|++.+| +++.+|....
T Consensus 327 ~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 391 (455)
T 3v47_A 327 KLNLSQNF-LGSIDS------------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIF 391 (455)
T ss_dssp EEECCSSC-CCEECG------------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred EEECCCCc-cCCcCh------------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHh
Confidence 88888854 454433 24567788888888887 45555 445556788888888875 5777776554
Q ss_pred cccCcceEE
Q 046470 847 SAKERRVVI 855 (888)
Q Consensus 847 ~~~~~l~~i 855 (888)
....++..+
T Consensus 392 ~~l~~L~~L 400 (455)
T 3v47_A 392 DRLTSLQKI 400 (455)
T ss_dssp TTCTTCCEE
T ss_pred ccCCcccEE
Confidence 333444444
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=7.3e-23 Score=232.86 Aligned_cols=134 Identities=20% Similarity=0.377 Sum_probs=98.6
Q ss_pred ccccCCcccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcc
Q 046470 491 RLTEAPAVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSL 570 (888)
Q Consensus 491 ~~~~~~~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L 570 (888)
.....+.+..+++++.|++++|.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+|. ++.+
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l 133 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNL 133 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCC
Confidence 344455667778888888888888887777888888888888888877766 7888888888888888888764 7888
Q ss_pred cCCCEEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 571 VSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 571 ~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
++|++|++++|.++.+|. +..+++|++|+++++ . ..++. +.++++|++|++++|...
T Consensus 134 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~-~-~~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 134 TNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ-V-TDLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp TTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES-C-CCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCccCCChh-hccCCcccEeecCCc-c-cCchh--hccCCCCCEEECcCCcCC
Confidence 888888888888777753 666666666666432 2 33333 566777777777766544
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.1e-23 Score=247.04 Aligned_cols=286 Identities=18% Similarity=0.205 Sum_probs=175.7
Q ss_pred ccccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEE
Q 046470 500 EWEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHL 576 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 576 (888)
.+.+++.+++.+|.+..+|. +..+++|++|++++|.++.+++..|..+++|++|+|++|.++.+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35678889999888888775 5678889999999999888888778899999999999999887754 56889999999
Q ss_pred eccCCcccccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHh
Q 046470 577 DLSWTEITGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKEL 655 (888)
Q Consensus 577 ~L~~~~i~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 655 (888)
+|++|.++.+|.. ++++++|++|++++|.+. .+|+..++++++|++|++++|..... .+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~-------------------~~ 188 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV-------------------DL 188 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBC-------------------CG
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCc-------------------Ch
Confidence 9999999888776 488999999999998764 44444488899999999988876532 13
Q ss_pred hcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCcccccc
Q 046470 656 LGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKL 735 (888)
Q Consensus 656 ~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~ 735 (888)
..+++|+.|+++.+....+. ....++.|.++++....... ...++|+.|++++|.+... .++
T Consensus 189 ~~l~~L~~L~l~~n~l~~l~-------~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l------ 250 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWL------ 250 (597)
T ss_dssp GGCTTCSEEECCSSCCSEEE-------CCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGG------
T ss_pred hhhhhhhhhhcccCcccccc-------CCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhh------
Confidence 44566666666554432211 11244555555444322111 1124555555555544421 111
Q ss_pred ccccCCCccEEEEecCCCCCCC--chhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeecccccc
Q 046470 736 FQSGFRSLSIVSVENCEKMKDL--TWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVN 813 (888)
Q Consensus 736 ~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~ 813 (888)
..+++|+.|+|++|. +..+ ..++.+++|+.|+|++|. ++.++. ....+|+|+.|+|++| .
T Consensus 251 --~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~-------------~~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 251 --LNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALNL-------------YGQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp --GGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSC-CCEEEC-------------SSSCCTTCCEEECCSS-C
T ss_pred --ccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCC-CCCCCc-------------ccccCCCCcEEECCCC-C
Confidence 134555555555553 2222 134455555555555532 333322 2334555555555554 3
Q ss_pred ccccCCCCCCCCCccEEEecCCCCCCCCC
Q 046470 814 LKSIYPNPLPFPKLKKIQIYSCPELKKLP 842 (888)
Q Consensus 814 L~~i~~~~~~~p~L~~L~i~~C~~L~~lP 842 (888)
+..++.....+++|+.|++.+|+ ++.+|
T Consensus 313 l~~i~~~~~~l~~L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 313 LLHVERNQPQFDRLENLYLDHNS-IVTLK 340 (597)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred CCccCcccccCCCCCEEECCCCC-CCCcC
Confidence 44444333444555555555542 44444
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=3.1e-23 Score=248.55 Aligned_cols=323 Identities=15% Similarity=0.147 Sum_probs=219.5
Q ss_pred CcccccccceEEEEecCCCcc------------------CCC-CC--CCCchhhhhhccCCcccccchHHhcCCcccEEE
Q 046470 496 PAVEEWEGAKRISLRGNRFDS------------------LSE-IP--TSPRLITLLLIANSIDEITDGFFQSMSSLRVLS 554 (888)
Q Consensus 496 ~~~~~~~~lr~L~l~~n~~~~------------------l~~-~~--~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~ 554 (888)
+.+..+++++.|++++|.+.. +|. +. .+++|++|++++|.+....+..|.++++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 346778899999999999887 664 34 789999999999986655556688999999999
Q ss_pred cCCCC-Ccc--cChhhhccc-------CCCEEeccCCcccccCc--ccccCCccceeccccccccCCccccccCCCCCCc
Q 046470 555 LGSNA-LSK--LPSGISSLV-------SLHHLDLSWTEITGLPQ--ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLE 622 (888)
Q Consensus 555 Ls~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~i~~Lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 622 (888)
|++|. ++. +|..++.+. +|++|+|++|.++.+|. .++++++|++|++++|.+. .+| . ++++++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcce
Confidence 99997 874 788888776 99999999999989998 8999999999999999764 888 3 88999999
Q ss_pred EEeccCCCCCCcccccccCcccccchhhHHHHhhcCCC-CceEEEEEechhhHHhhhcCC--------------------
Q 046470 623 VLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKH-LNFLSWSFRSSLAVQKFFKYP-------------------- 681 (888)
Q Consensus 623 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~-L~~L~l~~~~~~~~~~~~~~~-------------------- 681 (888)
+|++++|..... +..+..+++ |+.|+++.|....++......
T Consensus 599 ~L~Ls~N~l~~l-----------------p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 599 DLKLDYNQIEEI-----------------PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp EEECCSSCCSCC-----------------CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred EEECcCCccccc-----------------hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 999988876521 112334444 555555444433221110000
Q ss_pred ------c--cccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCC
Q 046470 682 ------K--LVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEK 753 (888)
Q Consensus 682 ------~--l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 753 (888)
. ....|+.|.++++.........+..+++|+.|++++|.+..++...+... ......+++|+.|+|++| .
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~-~~~l~nl~~L~~L~Ls~N-~ 739 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK-DGNYKNTYLLTTIDLRFN-K 739 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT-TSCCTTGGGCCEEECCSS-C
T ss_pred cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc-cccccccCCccEEECCCC-C
Confidence 0 01245666666555443332224466778888888877775433322200 000112348999999988 4
Q ss_pred CCCCc-hhh--hccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccc------cccccCCCCCCC
Q 046470 754 MKDLT-WLV--FVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNV------NLKSIYPNPLPF 824 (888)
Q Consensus 754 l~~l~-~l~--~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~------~L~~i~~~~~~~ 824 (888)
++.+| .+. .+++|+.|+|++|. ++.++. .+..+++|+.|+|++|+ -...++.....+
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~-------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT-------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSC-CSSCCC-------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CccchHHhhhccCCCcCEEEeCCCC-CCccch-------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 55665 454 78899999999864 555543 56678899999997743 344556666678
Q ss_pred CCccEEEecCCCCCCCCCCCCCcccCcceEEEch
Q 046470 825 PKLKKIQIYSCPELKKLPLNSSSAKERRVVIEGT 858 (888)
Q Consensus 825 p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~i~~~ 858 (888)
++|+.|++++|. ++.+|....+ ++..++-.
T Consensus 806 ~~L~~L~Ls~N~-L~~Ip~~l~~---~L~~LdLs 835 (876)
T 4ecn_A 806 PSLIQLQIGSND-IRKVDEKLTP---QLYILDIA 835 (876)
T ss_dssp SSCCEEECCSSC-CCBCCSCCCS---SSCEEECC
T ss_pred CCCCEEECCCCC-CCccCHhhcC---CCCEEECC
Confidence 999999999885 5888887543 44455443
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=8.2e-23 Score=233.55 Aligned_cols=293 Identities=22% Similarity=0.267 Sum_probs=176.2
Q ss_pred ccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEec
Q 046470 502 EGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDL 578 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L 578 (888)
.+++.|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|.++.+|.. ++++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57788888888887764 467788888888888888877777788888888888888888877654 677888888888
Q ss_pred cCCccccc-CcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhc
Q 046470 579 SWTEITGL-PQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLG 657 (888)
Q Consensus 579 ~~~~i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 657 (888)
++|.++.+ |..+.++++|++|++++|.+ ..++...+.++++|++|++.+|..... ....+.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~l~~ 174 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSI----------------PTEALSH 174 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSC----------------CHHHHTT
T ss_pred CCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCccc----------------ChhHhcc
Confidence 88888775 56678888888888888865 334333477888888888887765421 2345677
Q ss_pred CCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCcccccccc
Q 046470 658 LKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQ 737 (888)
Q Consensus 658 L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~ 737 (888)
+++|+.|+++.+........ .......|+.|.+.++..............+|++|++++|.+..++...+
T Consensus 175 l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-------- 244 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV-------- 244 (477)
T ss_dssp CTTCCEEEEESCCCCEECTT--CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH--------
T ss_pred cCCCcEEeCCCCcCcEeChh--hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh--------
Confidence 77788888776654332110 11112345555555543321111112222355666665555554322211
Q ss_pred ccCCCccEEEEecCCCCCCCc--hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeecccccccc
Q 046470 738 SGFRSLSIVSVENCEKMKDLT--WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLK 815 (888)
Q Consensus 738 ~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~ 815 (888)
..+++|+.|+|++|. ++.++ .+..+++|+.|+|++|. ++.+.. ..+..+++|+.|+|++| .++
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~ 309 (477)
T 2id5_A 245 RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP------------YAFRGLNYLRVLNVSGN-QLT 309 (477)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSC-CSEECT------------TTBTTCTTCCEEECCSS-CCS
T ss_pred cCccccCeeECCCCc-CCccChhhccccccCCEEECCCCc-cceECH------------HHhcCcccCCEEECCCC-cCc
Confidence 135556666665553 33332 24555566666665533 333322 23445566666666655 344
Q ss_pred ccCCCC-CCCCCccEEEecCCC
Q 046470 816 SIYPNP-LPFPKLKKIQIYSCP 836 (888)
Q Consensus 816 ~i~~~~-~~~p~L~~L~i~~C~ 836 (888)
.++... ..+++|+.|++.++|
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSC
T ss_pred eeCHhHcCCCcccCEEEccCCC
Confidence 444322 235556666665543
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=230.71 Aligned_cols=307 Identities=14% Similarity=0.151 Sum_probs=238.4
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCcc
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTEI 583 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~i 583 (888)
+.++.+++.+..+|.. -.+++++|++++|.++.+++..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 4566677777777752 246899999999999999888899999999999999999977 78899999999999999999
Q ss_pred cccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCc
Q 046470 584 TGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLN 662 (888)
Q Consensus 584 ~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 662 (888)
+.+|.. +.++++|++|++++|.+....|. .+.++++|++|++.+|..... ....+.++++|+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~l~~L~ 155 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYI----------------SHRAFSGLNSLE 155 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEE----------------CTTSSTTCTTCC
T ss_pred CccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCcccee----------------ChhhccCCCCCC
Confidence 998765 79999999999999987444444 489999999999999876532 223567889999
Q ss_pred eEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCC
Q 046470 663 FLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRS 742 (888)
Q Consensus 663 ~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~ 742 (888)
.|+++.+....+.... ....+.|+.|.+.++.........+..+++|+.|+++++......+.... ...+
T Consensus 156 ~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------~~~~ 225 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEA--LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--------YGLN 225 (477)
T ss_dssp EEEEESCCCSSCCHHH--HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT--------TTCC
T ss_pred EEECCCCcCcccChhH--hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc--------cCcc
Confidence 9999988755433210 01235789999999887666666788999999999999554322222221 2459
Q ss_pred ccEEEEecCCCCCCCc--hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccC-C
Q 046470 743 LSIVSVENCEKMKDLT--WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIY-P 819 (888)
Q Consensus 743 L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~-~ 819 (888)
|+.|+|++| .++.++ .+..+++|+.|+|++|. ++.++. ..+..+++|+.|+|+++ .+..+. .
T Consensus 226 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~ 290 (477)
T 2id5_A 226 LTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG------------SMLHELLRLQEIQLVGG-QLAVVEPY 290 (477)
T ss_dssp CSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT------------TSCTTCTTCCEEECCSS-CCSEECTT
T ss_pred ccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh------------hhccccccCCEEECCCC-ccceECHH
Confidence 999999999 566766 57899999999999965 666544 35778999999999998 466664 4
Q ss_pred CCCCCCCccEEEecCCCCCCCCCCCCCcccCcceEE
Q 046470 820 NPLPFPKLKKIQIYSCPELKKLPLNSSSAKERRVVI 855 (888)
Q Consensus 820 ~~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~i 855 (888)
....+++|+.|++.+| +++.+|........++..+
T Consensus 291 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEE
T ss_pred HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEE
Confidence 5556899999999997 7888887654333444444
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2.2e-23 Score=245.94 Aligned_cols=339 Identities=13% Similarity=0.132 Sum_probs=182.8
Q ss_pred ccccccceEEEEecCCCcc------------------CCC-CC--CCCchhhhhhccCCcccccchHHhcCCcccEEEcC
Q 046470 498 VEEWEGAKRISLRGNRFDS------------------LSE-IP--TSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLG 556 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~------------------l~~-~~--~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 556 (888)
+..+++++.|++++|.+.. +|. +. .+++|++|++++|.+....+..|.++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4455566666666666655 443 33 56666666666666444433445666666666666
Q ss_pred CCC-Cc--ccChhhhcc------cCCCEEeccCCcccccCc--ccccCCccceeccccccccCCccccccCCCCCCcEEe
Q 046470 557 SNA-LS--KLPSGISSL------VSLHHLDLSWTEITGLPQ--ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLR 625 (888)
Q Consensus 557 ~~~-i~--~lp~~i~~L------~~L~~L~L~~~~i~~Lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~ 625 (888)
+|. ++ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.+...+| . ++.+++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEE
Confidence 665 55 256655554 666666666666666665 56666666666666665533555 2 55556666666
Q ss_pred ccCCCCCCcc--ccccc--Cc---ccccchhhHHHHhhc--CCCCceEEEEEechhhHHh--hhcC-C--ccccceEEEE
Q 046470 626 LLGCGSNCVT--VTEEE--GN---VLCDDAGLLMKELLG--LKHLNFLSWSFRSSLAVQK--FFKY-P--KLVSITQSVV 691 (888)
Q Consensus 626 l~~~~~~~~~--~~~~~--~~---~~~~~~~~~~~~L~~--L~~L~~L~l~~~~~~~~~~--~~~~-~--~l~~~L~~L~ 691 (888)
+++|...... +.... .. +....-...+..+.. +++|+.|+++.+....... +... . -....++.|.
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 6555433110 00000 00 000000000011111 2255566665554332110 0000 0 0123567777
Q ss_pred EeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc-hhh--hccCcce
Q 046470 692 VYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT-WLV--FVQNLKE 768 (888)
Q Consensus 692 l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~--~l~~L~~ 768 (888)
+.++.........+..+++|++|++++|.+..++...+.... .....+++|+.|+|++|. ++.+| .+. .+++|+.
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-ENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVG 517 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-EECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCE
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-ccccccCCccEEECcCCc-CCccChhhhhccCCCcCE
Confidence 776665433333345577788888888777755433322000 000123388888888884 55555 454 7888888
Q ss_pred EeeecccccchhcccccccccccccCccCccccccceeeccc------cccccccCCCCCCCCCccEEEecCCCCCCCCC
Q 046470 769 LEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFN------NVNLKSIYPNPLPFPKLKKIQIYSCPELKKLP 842 (888)
Q Consensus 769 L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~------~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP 842 (888)
|+|++|. ++.++. .+..+++|+.|+|++ +.-...++.....+++|+.|++++|. ++.+|
T Consensus 518 L~Ls~N~-l~~ip~-------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip 582 (636)
T 4eco_A 518 IDLSYNS-FSKFPT-------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVN 582 (636)
T ss_dssp EECCSSC-CSSCCC-------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCC
T ss_pred EECCCCC-CCCcCh-------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccC
Confidence 8888854 555543 455688888888854 33345566666678888888888874 58888
Q ss_pred CCCCcccCcceEEEch
Q 046470 843 LNSSSAKERRVVIEGT 858 (888)
Q Consensus 843 ~~~~~~~~~l~~i~~~ 858 (888)
.... ..+..++-.
T Consensus 583 ~~~~---~~L~~L~Ls 595 (636)
T 4eco_A 583 EKIT---PNISVLDIK 595 (636)
T ss_dssp SCCC---TTCCEEECC
T ss_pred HhHh---CcCCEEECc
Confidence 7644 344444443
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=236.67 Aligned_cols=141 Identities=28% Similarity=0.347 Sum_probs=106.0
Q ss_pred cccccCCcccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hh
Q 046470 490 FRLTEAPAVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SG 566 (888)
Q Consensus 490 ~~~~~~~~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~ 566 (888)
.+...+|. .-.+++++|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|.++.+| ..
T Consensus 17 ~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 17 LNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 34444443 12357888888888887765 4677888888888888888887777888888888888888888764 67
Q ss_pred hhcccCCCEEeccCCcccccCc-ccccCCccceeccccccccC-CccccccCCCCCCcEEeccCCCCC
Q 046470 567 ISSLVSLHHLDLSWTEITGLPQ-ELKALEKLRYLNLEHAYMLS-IIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 567 i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
++++.+|++|++++|.++.+|. .++++++|++|++++|.+.. .+|.. ++++++|++|++++|...
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccc
Confidence 8888888888888888888765 57888888888888886643 35665 778888888888877654
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.9e-22 Score=238.14 Aligned_cols=143 Identities=24% Similarity=0.273 Sum_probs=122.2
Q ss_pred CcccccCCcccccccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-Ch
Q 046470 489 GFRLTEAPAVEEWEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PS 565 (888)
Q Consensus 489 ~~~~~~~~~~~~~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~ 565 (888)
+.+...+|.. -.+++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.++.+ |.
T Consensus 20 ~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 20 DQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp TSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh
Confidence 3444555542 23689999999999988764 78899999999999999999888899999999999999999987 88
Q ss_pred hhhcccCCCEEeccCCcccccC-cccccCCccceeccccccccC-CccccccCCCCCCcEEeccCCCCCC
Q 046470 566 GISSLVSLHHLDLSWTEITGLP-QELKALEKLRYLNLEHAYMLS-IIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 566 ~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
.++++++|++|++++|.++.+| ..++++++|++|++++|.+.. .+|.. ++++++|++|++++|....
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee
Confidence 8999999999999999999876 679999999999999997744 56776 8999999999999987653
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.1e-22 Score=231.53 Aligned_cols=314 Identities=17% Similarity=0.254 Sum_probs=190.7
Q ss_pred cccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEec
Q 046470 499 EEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDL 578 (888)
Q Consensus 499 ~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 578 (888)
..+.+++.|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++|.++.++. ++++++|++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 3467899999999999999988899999999999999998887 8999999999999999999876 999999999999
Q ss_pred cCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCccccccc-Ccc--cccchhhHHHHh
Q 046470 579 SWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEE-GNV--LCDDAGLLMKEL 655 (888)
Q Consensus 579 ~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~L 655 (888)
++|.++.+|. +.++++|++|++++|.+ ..+|. ++++++|++|++.++......+.... ... ........+..+
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l 195 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNTI-SDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 195 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEEE-CCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCcc-CCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhh
Confidence 9999999976 99999999999999976 56765 89999999999963221100000000 000 000000011224
Q ss_pred hcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCcccccc
Q 046470 656 LGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKL 735 (888)
Q Consensus 656 ~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~ 735 (888)
..+++|+.|+++.+.......+ ...+.|+.|.+.++..... ..+..+++|+.|++++|.+..+.+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--------- 260 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITPL----GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--------- 260 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---------
T ss_pred ccCCCCCEEEecCCcccccccc----cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---------
Confidence 4445555555544433222211 1123455555555543322 124455556666665555443211
Q ss_pred ccccCCCccEEEEecCCCCCCCchhhhccCcceEeeecccccchhccccccccc----------ccccCccCccccccce
Q 046470 736 FQSGFRSLSIVSVENCEKMKDLTWLVFVQNLKELEISRCHAVEDIISVDKLRDI----------SEIIGSEHNFFAQLEA 805 (888)
Q Consensus 736 ~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~----------~~~~~~~~~~~p~L~~ 805 (888)
...+++|+.|++++| .+..++.+..+++|+.|++++|. ++.++.......+ .+. .....+++|+.
T Consensus 261 -~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 335 (466)
T 1o6v_A 261 -LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQR 335 (466)
T ss_dssp -GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCCSCC--GGGGGCTTCCE
T ss_pred -hhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCcCCCc--hhhccCccCCE
Confidence 113444444444444 23333334444444444444432 2222210000000 000 12456778888
Q ss_pred eeccccccccccCCCCCCCCCccEEEecCCCCCCCCC
Q 046470 806 LNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLP 842 (888)
Q Consensus 806 L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP 842 (888)
|++++| .+..++ ....+++|+.|++.+|+ ++.++
T Consensus 336 L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~ 369 (466)
T 1o6v_A 336 LFFYNN-KVSDVS-SLANLTNINWLSAGHNQ-ISDLT 369 (466)
T ss_dssp EECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCBCG
T ss_pred eECCCC-ccCCch-hhccCCCCCEEeCCCCc-cCccc
Confidence 888777 455553 44557888888888875 44433
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.9e-22 Score=235.15 Aligned_cols=172 Identities=20% Similarity=0.239 Sum_probs=129.1
Q ss_pred ccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEec
Q 046470 502 EGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDL 578 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L 578 (888)
+++++|++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|+|++|.++.+|.. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 68999999999988764 478889999999999999888888889999999999999999988655 899999999999
Q ss_pred cCCcccc--cCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccC-------cccccchh
Q 046470 579 SWTEITG--LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEG-------NVLCDDAG 649 (888)
Q Consensus 579 ~~~~i~~--Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~-------~~~~~~~~ 649 (888)
++|.++. .|..++++++|++|++++|.....+|...+.++++|++|++.+|............ .+......
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999885 46788999999999999997667777555889999999999988765321100000 00000011
Q ss_pred hHH-HHhhcCCCCceEEEEEechhh
Q 046470 650 LLM-KELLGLKHLNFLSWSFRSSLA 673 (888)
Q Consensus 650 ~~~-~~L~~L~~L~~L~l~~~~~~~ 673 (888)
... ..+..+++|+.|+++.+....
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccchhhHhhcccccEEEccCCcccc
Confidence 111 123457888888888766443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.2e-22 Score=228.73 Aligned_cols=310 Identities=17% Similarity=0.209 Sum_probs=229.7
Q ss_pred CcccccccceEEEEecCCCc-cCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcc-cChh--hhc
Q 046470 496 PAVEEWEGAKRISLRGNRFD-SLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSK-LPSG--ISS 569 (888)
Q Consensus 496 ~~~~~~~~lr~L~l~~n~~~-~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~-lp~~--i~~ 569 (888)
..+..+++++.|++++|.+. .++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.++. .|.. ++.
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 45677889999999999875 333 37889999999999999988877779999999999999999985 4544 889
Q ss_pred ccCCCEEeccCCccccc-Ccc-cccCCccceeccccccccCCccccccCCC-----------------------------
Q 046470 570 LVSLHHLDLSWTEITGL-PQE-LKALEKLRYLNLEHAYMLSIIPHQLISGF----------------------------- 618 (888)
Q Consensus 570 L~~L~~L~L~~~~i~~L-p~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L----------------------------- 618 (888)
+++|++|++++|.++.+ |.. +.++++|++|++++|.+....|.. +..+
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhccccccc
Confidence 99999999999999986 555 889999999999999775444433 4333
Q ss_pred -----CCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHH----hhh-----cCCc-c
Q 046470 619 -----SKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQ----KFF-----KYPK-L 683 (888)
Q Consensus 619 -----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~----~~~-----~~~~-l 683 (888)
++|++|++++|..... ....+.......+|+.|+++.+...... .+. .... .
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~-------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKES-------------MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHH-------------HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGT
T ss_pred cccccceeeeEecCCCccccc-------------chhhhhccccccceeeEeeccccccccccchhhhccCccccccccc
Confidence 4566666665554311 1222333344578888887655321100 000 0000 1
Q ss_pred ccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc--hhh
Q 046470 684 VSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT--WLV 761 (888)
Q Consensus 684 ~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~ 761 (888)
...++.|++.++.........+..+++|++|++++|.+..+.+..+. .+++|+.|+|++|. ++.++ .+.
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~Ls~N~-l~~~~~~~~~ 344 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--------GLTHLLKLNLSQNF-LGSIDSRMFE 344 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECCSSC-CCEECGGGGT
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc--------CcccCCEEECCCCc-cCCcChhHhc
Confidence 24789999998887665555688899999999999999987666554 58999999999994 55542 578
Q ss_pred hccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCC-CCCCCccEEEecCCCCCCC
Q 046470 762 FVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNP-LPFPKLKKIQIYSCPELKK 840 (888)
Q Consensus 762 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~ 840 (888)
.+++|++|+|++|. ++.++. ..+..+++|++|+|++| .++.++... ..+++|+.|++.+|+--..
T Consensus 345 ~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 345 NLDKLEVLDLSYNH-IRALGD------------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TCTTCCEEECCSSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcccCCEEECCCCc-ccccCh------------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccC
Confidence 99999999999965 565543 36778999999999998 688877654 5689999999999864333
Q ss_pred CC
Q 046470 841 LP 842 (888)
Q Consensus 841 lP 842 (888)
.|
T Consensus 411 ~~ 412 (455)
T 3v47_A 411 CP 412 (455)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=7.4e-23 Score=221.91 Aligned_cols=293 Identities=18% Similarity=0.186 Sum_probs=213.9
Q ss_pred cceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCC
Q 046470 503 GAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWT 581 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~ 581 (888)
+++.++++++.+..+|... .++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 6788999999998887532 47899999999999999887799999999999999999977 778999999999999999
Q ss_pred cccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCC
Q 046470 582 EITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHL 661 (888)
Q Consensus 582 ~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 661 (888)
.++.+|..+. ++|++|++++|.+ ..+|...+.++++|++|++.+|..... ......+..+ +|
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~~~l-~L 174 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENS--------------GFEPGAFDGL-KL 174 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGG--------------GSCTTSSCSC-CC
T ss_pred cCCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccC--------------CCCcccccCC-cc
Confidence 9999998776 8999999999976 667766689999999999999876421 1122334455 78
Q ss_pred ceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCC
Q 046470 662 NFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFR 741 (888)
Q Consensus 662 ~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~ 741 (888)
+.|+++.+....++. ...+.++.|.+.++.........+..+++|+.|++++|.+..+.+..+. .++
T Consensus 175 ~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~ 241 (332)
T 2ft3_A 175 NYLRISEAKLTGIPK-----DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS--------FLP 241 (332)
T ss_dssp SCCBCCSSBCSSCCS-----SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG--------GCT
T ss_pred CEEECcCCCCCccCc-----cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh--------CCC
Confidence 888887776544322 1225677888887776555555677888888888888888765444433 578
Q ss_pred CccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccc--c-
Q 046470 742 SLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKS--I- 817 (888)
Q Consensus 742 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~--i- 817 (888)
+|+.|+|++| .++.+| .+..+++|+.|++++|. ++.++....... .....+++|+.|.+.+++ +.. +
T Consensus 242 ~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~------~~~~~~~~l~~L~l~~N~-~~~~~~~ 312 (332)
T 2ft3_A 242 TLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV------GFGVKRAYYNGISLFNNP-VPYWEVQ 312 (332)
T ss_dssp TCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS------SCCSSSCCBSEEECCSSS-SCGGGSC
T ss_pred CCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHcccc------ccccccccccceEeecCc-ccccccC
Confidence 8889998888 455655 57888889999988854 666654221110 012236788888888886 332 2
Q ss_pred CCCCCCCCCccEEEecCCC
Q 046470 818 YPNPLPFPKLKKIQIYSCP 836 (888)
Q Consensus 818 ~~~~~~~p~L~~L~i~~C~ 836 (888)
+.....+++|+.|++.+|.
T Consensus 313 ~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 313 PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGGTTBCCSTTEEC----
T ss_pred cccccccchhhhhhccccc
Confidence 2223346778888887764
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.2e-22 Score=239.72 Aligned_cols=110 Identities=22% Similarity=0.354 Sum_probs=74.3
Q ss_pred cccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCC
Q 046470 497 AVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSL 573 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L 573 (888)
.+..++++++|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|++++|.++.+| ..++++++|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 3556667777777777766653 2566677777777777776665555677777777777777776654 556777777
Q ss_pred CEEeccCCcccc--cCcccccCCccceeccccccc
Q 046470 574 HHLDLSWTEITG--LPQELKALEKLRYLNLEHAYM 606 (888)
Q Consensus 574 ~~L~L~~~~i~~--Lp~~i~~L~~L~~L~l~~~~~ 606 (888)
++|++++|.++. +|..++++++|++|++++|.+
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 777777776663 566677777777777766644
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=6.1e-22 Score=229.05 Aligned_cols=333 Identities=16% Similarity=0.197 Sum_probs=203.4
Q ss_pred ccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEecc
Q 046470 502 EGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLS 579 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 579 (888)
+++++|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 68889999998888775 367888899999999988888777788899999999999988888876 78899999999
Q ss_pred CCcccc--cCcccccCCccceeccccccccCCccccccCCCCCC--cEEeccCCCC--CCcccccccCccccc-c-----
Q 046470 580 WTEITG--LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKL--EVLRLLGCGS--NCVTVTEEEGNVLCD-D----- 647 (888)
Q Consensus 580 ~~~i~~--Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~--~~~~~~~~~~~~~~~-~----- 647 (888)
+|.++. +|..++++++|++|++++|.+.. . .+..+++| ++|++.+|.. .... ......... .
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~-~~~~l~~L~L~~L~l~~n~l~~~~~~--~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK---S-SVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVF 172 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---G-GGGGGTTSCEEEEEEEECTTTTSSCC--TTTTTTCCEEEEEEEC
T ss_pred CCccccccchhhhccCCcceEEEecCcccch---h-hccccccceeeEEEeecccccccccc--cccccccccceEEEEe
Confidence 998886 57888899999999998886533 1 26677777 8898888766 2110 000000000 0
Q ss_pred ------------------------------------hhhHHHHhhcCCCCceEEEEEechhhH--HhhhcCCccccceEE
Q 046470 648 ------------------------------------AGLLMKELLGLKHLNFLSWSFRSSLAV--QKFFKYPKLVSITQS 689 (888)
Q Consensus 648 ------------------------------------~~~~~~~L~~L~~L~~L~l~~~~~~~~--~~~~~~~~l~~~L~~ 689 (888)
....+..+..+++|+.|+++.+..... ..+.... ....++.
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh-hhCcccE
Confidence 011122345555555555554332110 0000000 0013333
Q ss_pred EEEeecCCCc----------------------------cc------------------------ccc-ccccCCcceEEe
Q 046470 690 VVVYQCECPL----------------------------FN------------------------VLH-LAYMENLQELHL 716 (888)
Q Consensus 690 L~l~~~~~~~----------------------------~~------------------------~l~-l~~l~~L~~L~l 716 (888)
|.+.++.... .. ... ...+++|++|++
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 3333332110 00 000 134556666666
Q ss_pred ecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc----hhhhccCcceEeeecccccch-hccccc--cccc
Q 046470 717 EDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT----WLVFVQNLKELEISRCHAVED-IISVDK--LRDI 789 (888)
Q Consensus 717 ~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~L~~c~~l~~-l~~~~~--~~~~ 789 (888)
++|.+....+.++ ..+++|+.|++++|. ++.++ .+..+++|++|++++|. ++. ++.... ...+
T Consensus 332 s~n~l~~~~~~~~--------~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 332 SNNLLTDTVFENC--------GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CSSCCCTTTTTTC--------CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTC
T ss_pred ECCccChhhhhhh--------ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccC
Confidence 6655553223322 257788888888773 44432 36678888888888865 443 443110 1111
Q ss_pred ccccC-------ccCccc-cccceeeccccccccccCCCCCCCCCccEEEecCCCCCCCCCCCCCcccCcceEE
Q 046470 790 SEIIG-------SEHNFF-AQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLPLNSSSAKERRVVI 855 (888)
Q Consensus 790 ~~~~~-------~~~~~~-p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~i 855 (888)
..+.. .....+ ++|+.|++++| +++.++.....+++|+.|++.+| +++.+|........++..+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEE
Confidence 11100 011123 68999999988 67788877778999999999998 7899998733333445544
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.5e-22 Score=223.02 Aligned_cols=270 Identities=19% Similarity=0.232 Sum_probs=221.7
Q ss_pred CCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEEeccCCcccccC-cccccCCccce
Q 046470 521 PTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDLSWTEITGLP-QELKALEKLRY 598 (888)
Q Consensus 521 ~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~ 598 (888)
..++++++|++.+|.++.+|..+|..+++|++|++++|.++.+| ..++.+++|++|++++|.++.+| ..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34688999999999999999999999999999999999999885 48999999999999999999975 55899999999
Q ss_pred eccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhh
Q 046470 599 LNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFF 678 (888)
Q Consensus 599 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~ 678 (888)
|++++|.+ ..+|...++++++|++|++++|..... ....+..+++|+.|+++.+......
T Consensus 122 L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~----------------~~~~~~~l~~L~~L~l~~n~l~~~~--- 181 (390)
T 3o6n_A 122 LVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERI----------------EDDTFQATTSLQNLQLSSNRLTHVD--- 181 (390)
T ss_dssp EECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBC----------------CTTTTSSCTTCCEEECCSSCCSBCC---
T ss_pred EECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCcc----------------ChhhccCCCCCCEEECCCCcCCccc---
Confidence 99999976 688887679999999999999877532 2234678899999999887654431
Q ss_pred cCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc
Q 046470 679 KYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT 758 (888)
Q Consensus 679 ~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 758 (888)
....+.++.|.+.++.... +...++|++|++++|.+..++.. .+++|+.|++++| .++.++
T Consensus 182 --~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~-----------~~~~L~~L~l~~n-~l~~~~ 242 (390)
T 3o6n_A 182 --LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-----------VNVELTILKLQHN-NLTDTA 242 (390)
T ss_dssp --GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC-----------CCSSCCEEECCSS-CCCCCG
T ss_pred --cccccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc-----------ccccccEEECCCC-CCcccH
Confidence 1223578888887765422 34457899999999998866322 3679999999999 577788
Q ss_pred hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecCCCCC
Q 046470 759 WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPEL 838 (888)
Q Consensus 759 ~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L 838 (888)
++..+++|++|+|++|. ++.++. ..+..+++|+.|+|+++ .++.++.....+|+|+.|++.+| ++
T Consensus 243 ~l~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l 307 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNE-LEKIMY------------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HL 307 (390)
T ss_dssp GGGGCTTCSEEECCSSC-CCEEES------------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CC
T ss_pred HHcCCCCccEEECCCCc-CCCcCh------------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cc
Confidence 99999999999999965 555533 36678999999999998 68888877778999999999998 68
Q ss_pred CCCCCC
Q 046470 839 KKLPLN 844 (888)
Q Consensus 839 ~~lP~~ 844 (888)
+.+|..
T Consensus 308 ~~~~~~ 313 (390)
T 3o6n_A 308 LHVERN 313 (390)
T ss_dssp CCCGGG
T ss_pred eecCcc
Confidence 888764
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=3.6e-22 Score=216.36 Aligned_cols=293 Identities=17% Similarity=0.203 Sum_probs=217.7
Q ss_pred cceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCC
Q 046470 503 GAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWT 581 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~ 581 (888)
+++.++++++.+..+|.. -.++|++|++++|.++.+++..|..+++|++|+|++|.++.+ |..++.+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 678899998888887752 237899999999999999988899999999999999999987 888999999999999999
Q ss_pred cccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCC
Q 046470 582 EITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHL 661 (888)
Q Consensus 582 ~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 661 (888)
.++.+|..+. ++|++|++++|.+ ..++...+.++++|++|++++|.... .......+.++++|
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKS--------------SGIENGAFQGMKKL 173 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCG--------------GGBCTTGGGGCTTC
T ss_pred cCCccChhhc--ccccEEECCCCcc-cccCHhHhcCCccccEEECCCCcCCc--------------cCcChhhccCCCCc
Confidence 9999988775 7999999999976 55665558999999999999887642 11233457788999
Q ss_pred ceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCC
Q 046470 662 NFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFR 741 (888)
Q Consensus 662 ~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~ 741 (888)
+.|+++.+....++. ...+.|+.|.+.++.........+..+++|++|++++|.+..+.+..+. .++
T Consensus 174 ~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l~ 240 (330)
T 1xku_A 174 SYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--------NTP 240 (330)
T ss_dssp CEEECCSSCCCSCCS-----SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--------GST
T ss_pred CEEECCCCccccCCc-----cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc--------CCC
Confidence 999998776544322 1225788888888776555555677888899999988888876554443 578
Q ss_pred CccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCC-
Q 046470 742 SLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYP- 819 (888)
Q Consensus 742 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~- 819 (888)
+|+.|+|++|. ++.+| ++..+++|++|++++|. ++.++...+... .....+++|+.|++.+++ +..+..
T Consensus 241 ~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~------~~~~~~~~l~~l~l~~N~-~~~~~i~ 311 (330)
T 1xku_A 241 HLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP------GYNTKKASYSGVSLFSNP-VQYWEIQ 311 (330)
T ss_dssp TCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS------SCCTTSCCCSEEECCSSS-SCGGGSC
T ss_pred CCCEEECCCCc-CccCChhhccCCCcCEEECCCCc-CCccChhhcCCc------ccccccccccceEeecCc-ccccccC
Confidence 88999998884 55554 67788889999998854 666655222111 112246788888888876 333222
Q ss_pred --CCCCCCCccEEEecCC
Q 046470 820 --NPLPFPKLKKIQIYSC 835 (888)
Q Consensus 820 --~~~~~p~L~~L~i~~C 835 (888)
....+++|+.+++.++
T Consensus 312 ~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGTTCCCGGGEEC---
T ss_pred ccccccccceeEEEeccc
Confidence 2233567777777664
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.4e-22 Score=228.61 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=76.2
Q ss_pred cccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEE
Q 046470 497 AVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHL 576 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 576 (888)
.+..+++++.|++++|.+..++.+..+++|++|++++|.++.++ +..+++|++|++++|.++.+| ++.+++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 34445666666666666666665666666666666666666553 556666666666666666654 5666666666
Q ss_pred eccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCC
Q 046470 577 DLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCG 630 (888)
Q Consensus 577 ~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 630 (888)
++++|.++.+| ++.+++|++|++++|.+ ..+| ++++++|++|++++|.
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~---l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTL-TEID---VSHNTQLTELDCHLNK 159 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCC-SCCC---CTTCTTCCEEECTTCS
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCcc-ceec---cccCCcCCEEECCCCC
Confidence 66666666664 56666666666666654 3333 5566666666666654
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=6.4e-22 Score=233.53 Aligned_cols=327 Identities=18% Similarity=0.142 Sum_probs=211.7
Q ss_pred ccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEec
Q 046470 502 EGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDL 578 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L 578 (888)
..+++|++++|.+..++ .+..+++|++|++++|.+..+.+..|.++++|++|+|++|.++.+ |..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 47899999999998874 478899999999999999998888899999999999999999876 778999999999999
Q ss_pred cCCccccc-CcccccCCccceeccccccccC-CccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhh
Q 046470 579 SWTEITGL-PQELKALEKLRYLNLEHAYMLS-IIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELL 656 (888)
Q Consensus 579 ~~~~i~~L-p~~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 656 (888)
++|.++.+ |..++++++|++|++++|.+.. ..|. +..+++|++|++++|..... ....+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~----------------~~~~~~ 174 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYL----------------SKEDMS 174 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEECCSSCCCEE----------------CHHHHH
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEcccCccccc----------------Chhhhh
Confidence 99999997 6789999999999999997644 2244 55699999999999876532 234455
Q ss_pred cCCCCc--eEEEEEechhhHHh-hhcCC-----------------------------------------------cc-cc
Q 046470 657 GLKHLN--FLSWSFRSSLAVQK-FFKYP-----------------------------------------------KL-VS 685 (888)
Q Consensus 657 ~L~~L~--~L~l~~~~~~~~~~-~~~~~-----------------------------------------------~l-~~ 685 (888)
.+++|+ .|+++.+....... ..... .+ ..
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 566666 34443333221110 00000 00 01
Q ss_pred ceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCC-c-hhhhc
Q 046470 686 ITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL-T-WLVFV 763 (888)
Q Consensus 686 ~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l 763 (888)
.++.|.+.++.........+..+++|++|++++|.+..++ .++. .+++|++|++++|. +..+ + .+..+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~l~--------~l~~L~~L~l~~n~-l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLV--------GLSTLKKLVLSANK-FENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC-SSCC--------SCTTCCEEECTTCC-CSBGGGGCGGGC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC-hhhc--------ccccCCEEECccCC-cCcCchhhhhcc
Confidence 4666666666555554445777888888888888777552 2222 35666666666663 3332 2 35566
Q ss_pred cCcceEeeecccccchhcccc--cccc----------ccccc--CccCccccccceeecccccccccc-CCCCCCCCCcc
Q 046470 764 QNLKELEISRCHAVEDIISVD--KLRD----------ISEII--GSEHNFFAQLEALNIFNNVNLKSI-YPNPLPFPKLK 828 (888)
Q Consensus 764 ~~L~~L~L~~c~~l~~l~~~~--~~~~----------~~~~~--~~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~p~L~ 828 (888)
++|++|++++|.....++... .... +.... +..+..+++|++|++++|. +..+ +.....+++|+
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLE 403 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCS
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCC
Confidence 666666666654322222200 0000 00000 1245667778888887774 4443 33445578888
Q ss_pred EEEecCCCCCCCCCCCCCcccCcceEEEc
Q 046470 829 KIQIYSCPELKKLPLNSSSAKERRVVIEG 857 (888)
Q Consensus 829 ~L~i~~C~~L~~lP~~~~~~~~~l~~i~~ 857 (888)
.|++.+|.--...|........++..++.
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 88888774333333332333345555543
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.1e-22 Score=245.60 Aligned_cols=132 Identities=21% Similarity=0.269 Sum_probs=97.3
Q ss_pred ccccccceEEEEecCCCcc-CCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcc-cChhhhcccCCCE
Q 046470 498 VEEWEGAKRISLRGNRFDS-LSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSK-LPSGISSLVSLHH 575 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~-l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~ 575 (888)
...+.+++.|++++|.+.. ++.+..+++|++|++++|.++...+..|..+++|++|++++|.+.. +|.. .+++|++
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 3567788888888888765 4457778888888888888876666668888888888888887774 3432 6777777
Q ss_pred EeccCCccc-ccCcccccC-CccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 576 LDLSWTEIT-GLPQELKAL-EKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 576 L~L~~~~i~-~Lp~~i~~L-~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
|++++|.++ .+|..+..+ ++|++|++++|.+...+|.. ++++++|++|++++|...
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFS 331 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEE
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCccc
Confidence 777777776 467776664 77777777777765566655 777777777777776553
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=5.9e-22 Score=233.83 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=42.8
Q ss_pred ccccccceEEEEecCCCccC--CCCCCCCchhhhhhccCCcccccchHHhcCCccc--EEEcCCCCCccc
Q 046470 498 VEEWEGAKRISLRGNRFDSL--SEIPTSPRLITLLLIANSIDEITDGFFQSMSSLR--VLSLGSNALSKL 563 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~l--~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~--~L~Ls~~~i~~l 563 (888)
+..+++++.|++++|.+..+ +.+..+++|++|++++|.++.+++..|..+++|+ .|++++|.++.+
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 45566777777777776654 4455567777777777777666666666666666 666666655543
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=237.93 Aligned_cols=148 Identities=21% Similarity=0.283 Sum_probs=124.1
Q ss_pred eEEEcCcccccCCcccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCC-cccccchHHhcCCcccEEEcCCCCC
Q 046470 484 YLVRTGFRLTEAPAVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANS-IDEITDGFFQSMSSLRVLSLGSNAL 560 (888)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~~~i 560 (888)
.+...+.+...+|. ..+++++|++++|.+..+. .+..+++|++|++++|. +..+++..|.++++|++|+|++|.+
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 33344556666776 5679999999999998764 57899999999999995 5667677799999999999999999
Q ss_pred ccc-ChhhhcccCCCEEeccCCcccc-cCcc--cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCC
Q 046470 561 SKL-PSGISSLVSLHHLDLSWTEITG-LPQE--LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 561 ~~l-p~~i~~L~~L~~L~L~~~~i~~-Lp~~--i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
+.+ |..++++++|++|+|++|.++. +|.. ++++++|++|++++|.+....|...+++|++|++|++++|....
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 977 8899999999999999999987 5655 99999999999999987554443448999999999999987653
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1e-21 Score=229.13 Aligned_cols=348 Identities=19% Similarity=0.211 Sum_probs=216.2
Q ss_pred cCcccccCCcccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh
Q 046470 488 TGFRLTEAPAVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS 565 (888)
Q Consensus 488 ~~~~~~~~~~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~ 565 (888)
.+.....+|.. -.++++.|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|.++.+|.
T Consensus 39 s~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 39 SNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp TTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS
T ss_pred CCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc
Confidence 34444444432 1368999999999998876 47889999999999999999888889999999999999999999987
Q ss_pred hhhcccCCCEEeccCCcccccC--cccccCCccceeccccccccCCccccccCCCCCC--cEEeccCCCC--CCcccccc
Q 046470 566 GISSLVSLHHLDLSWTEITGLP--QELKALEKLRYLNLEHAYMLSIIPHQLISGFSKL--EVLRLLGCGS--NCVTVTEE 639 (888)
Q Consensus 566 ~i~~L~~L~~L~L~~~~i~~Lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~--~~~~~~~~ 639 (888)
. .+++|++|++++|.++.+| ..++++++|++|++++|.+.. .+ +..+++| ++|++.+|.. ........
T Consensus 118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccccccccCcccc
Confidence 7 8999999999999998864 789999999999999987633 21 4555555 9999988866 21110000
Q ss_pred cC-c----------------c----------------c-----ccchhhHHHHhhcCCCCceEEEEEechhh--HHhhhc
Q 046470 640 EG-N----------------V----------------L-----CDDAGLLMKELLGLKHLNFLSWSFRSSLA--VQKFFK 679 (888)
Q Consensus 640 ~~-~----------------~----------------~-----~~~~~~~~~~L~~L~~L~~L~l~~~~~~~--~~~~~~ 679 (888)
.. . . . .......+..+..+++|+.+++..+.... +.....
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 00 0 0 0 00011223345555555555554433211 000000
Q ss_pred CCccccceEEEEEeecCCCc-c---------------------------------------------------cccc-cc
Q 046470 680 YPKLVSITQSVVVYQCECPL-F---------------------------------------------------NVLH-LA 706 (888)
Q Consensus 680 ~~~l~~~L~~L~l~~~~~~~-~---------------------------------------------------~~l~-l~ 706 (888)
.. ....++.|.+.++.... . .... ..
T Consensus 272 ~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 350 (562)
T 3a79_B 272 FF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350 (562)
T ss_dssp HH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred hh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence 00 00134444444432110 0 0000 15
Q ss_pred ccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc----hhhhccCcceEeeecccccch-hc
Q 046470 707 YMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT----WLVFVQNLKELEISRCHAVED-II 781 (888)
Q Consensus 707 ~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~L~~c~~l~~-l~ 781 (888)
.+++|++|++++|.+....+..+. .+++|+.|++++| .++.++ .+..+++|+.|++++|. ++. ++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 420 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCS--------TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAY 420 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCC--------SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCS
T ss_pred CCCCceEEECCCCccccchhhhhc--------ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccC
Confidence 567888888888777653333332 4677888888777 455433 25677777888877755 333 33
Q ss_pred cccc--cccccccc-------CccCccc-cccceeeccccccccccCCCCCCCCCccEEEecCCCCCCCCCCCCCcccCc
Q 046470 782 SVDK--LRDISEII-------GSEHNFF-AQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLPLNSSSAKER 851 (888)
Q Consensus 782 ~~~~--~~~~~~~~-------~~~~~~~-p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~~ 851 (888)
.... ...+..+. ......+ ++|+.|+|++| .++.++.....+++|+.|++.+| +++.+|........+
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTS 498 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTT
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCC
Confidence 2100 00110000 0112233 69999999998 78889887778999999999997 688999873333344
Q ss_pred ceEE
Q 046470 852 RVVI 855 (888)
Q Consensus 852 l~~i 855 (888)
+..+
T Consensus 499 L~~L 502 (562)
T 3a79_B 499 LQYI 502 (562)
T ss_dssp CCCE
T ss_pred CCEE
Confidence 4444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=6.7e-22 Score=223.02 Aligned_cols=303 Identities=14% Similarity=0.148 Sum_probs=231.2
Q ss_pred ccccCCcccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcc
Q 046470 491 RLTEAPAVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSL 570 (888)
Q Consensus 491 ~~~~~~~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L 570 (888)
.....+.+..++++++|++++|.+..++ +..+++|++|++++|.++.++ +..+++|++|++++|.++.+| ++.+
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l 126 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQN 126 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTC
T ss_pred CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec--CCCC
Confidence 3444567788899999999999999986 889999999999999998875 789999999999999999986 8999
Q ss_pred cCCCEEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhh
Q 046470 571 VSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGL 650 (888)
Q Consensus 571 ~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 650 (888)
++|++|++++|.++.+| ++++++|++|++++|.....++ ++.+++|++|++++|.....
T Consensus 127 ~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l---------------- 185 (457)
T 3bz5_A 127 PLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL---------------- 185 (457)
T ss_dssp TTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC----------------
T ss_pred CcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee----------------
Confidence 99999999999999985 8899999999999997667663 78999999999999877521
Q ss_pred HHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCc
Q 046470 651 LMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPE 730 (888)
Q Consensus 651 ~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~ 730 (888)
.+..+++|+.|+++.+...... ....+.|+.|+++++..... ++..+++|+.|++++|.+..+++..+.
T Consensus 186 ---~l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~~i---p~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 186 ---DVSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp ---CCTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred ---ccccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCccccc---CccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 1667889999999887765431 22246889999998876553 378889999999999998876543322
Q ss_pred cccccccccCCCccEEEEecCCCCCCCchhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccc
Q 046470 731 EVKKLFQSGFRSLSIVSVENCEKMKDLTWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFN 810 (888)
Q Consensus 731 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~ 810 (888)
....+. -...+|+.|++++|..+..+| .+.+++|+.|++++|..++.++.. ...+..+ .+...|+|+.|++++
T Consensus 255 ~L~~L~-l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~--~~~L~~L---~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 255 KLTTLH-CIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQ--AAGITEL---DLSQNPKLVYLYLNN 327 (457)
T ss_dssp TCCEEE-CTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECT--TCCCSCC---CCTTCTTCCEEECTT
T ss_pred CCCEEe-ccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccC--CCcceEe---chhhcccCCEEECCC
Confidence 111000 012355566666665454444 567899999999999887777641 1122221 356678899999988
Q ss_pred cccccccCCCCCCCCCccEEEecCCCCCCCCC
Q 046470 811 NVNLKSIYPNPLPFPKLKKIQIYSCPELKKLP 842 (888)
Q Consensus 811 ~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP 842 (888)
+ +++.++ ...+++|+.|++.++ +++.+|
T Consensus 328 N-~l~~l~--l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 328 T-ELTELD--VSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp C-CCSCCC--CTTCTTCSEEECCSS-CCCBCT
T ss_pred C-cccccc--cccCCcCcEEECCCC-CCCCcc
Confidence 7 577763 566899999999874 455443
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2e-21 Score=226.60 Aligned_cols=328 Identities=16% Similarity=0.173 Sum_probs=208.2
Q ss_pred ccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccC
Q 046470 502 EGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSW 580 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~ 580 (888)
...++++++++.++.+|... .++|++|++++|.++.+++..|.++++|++|+|++|.++.+ |..++++++|++|++++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 34589999999999988622 38999999999999999988899999999999999999987 77899999999999999
Q ss_pred CcccccCcccccCCccceeccccccccCCcc--ccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcC
Q 046470 581 TEITGLPQELKALEKLRYLNLEHAYMLSIIP--HQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGL 658 (888)
Q Consensus 581 ~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 658 (888)
|.++.+|.. .+++|++|++++|.+ ..+| .. ++++++|++|++++|..... .+..+.++
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l-~~l~~p~~-~~~l~~L~~L~L~~n~l~~~----------------~~~~l~~L 169 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDF-DVLPVCKE-FGNLTKLTFLGLSAAKFRQL----------------DLLPVAHL 169 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCC-SBCCCCGG-GGGCTTCCEEEEECSBCCTT----------------TTGGGTTS
T ss_pred CcCCccCcc--ccccCCEEECCCCCc-cccCchHh-hcccCcccEEecCCCccccC----------------chhhhhhc
Confidence 999999987 899999999999976 4443 44 89999999999999876421 22334444
Q ss_pred CCCceEEEEEech--hhHH--hhhcCC----------------------ccccceEEEEEeecCC---------------
Q 046470 659 KHLNFLSWSFRSS--LAVQ--KFFKYP----------------------KLVSITQSVVVYQCEC--------------- 697 (888)
Q Consensus 659 ~~L~~L~l~~~~~--~~~~--~~~~~~----------------------~l~~~L~~L~l~~~~~--------------- 697 (888)
+|+.|+++.+.. .... .+.... .....++.+++.++..
T Consensus 170 -~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 170 -HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp -CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred -eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence 448888877654 1100 000000 0122444444444310
Q ss_pred Ccccccc----------------ccccCCcceEEeecCCcceeeecCC-----ccc------------------------
Q 046470 698 PLFNVLH----------------LAYMENLQELHLEDSDLEEMRIDGP-----EEV------------------------ 732 (888)
Q Consensus 698 ~~~~~l~----------------l~~l~~L~~L~l~~~~l~~l~~~~~-----~~~------------------------ 732 (888)
.....+. ....++|++|+++++.+....+..+ ...
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~ 328 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhh
Confidence 0000000 0112367777776654431111111 000
Q ss_pred ---------------cccc-cccCCCccEEEEecCCCCCCC-chhhhccCcceEeeecccccchhccc----ccccc---
Q 046470 733 ---------------KKLF-QSGFRSLSIVSVENCEKMKDL-TWLVFVQNLKELEISRCHAVEDIISV----DKLRD--- 788 (888)
Q Consensus 733 ---------------~~~~-~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~l~~~----~~~~~--- 788 (888)
.... ...+++|+.|++++|.....+ ..++.+++|+.|++++|. ++.++.. .....
T Consensus 329 ~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCE
T ss_pred ccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCE
Confidence 0000 146789999999999543323 468899999999999964 6654320 00000
Q ss_pred -------ccc-ccCccCccccccceeeccccccccccCCCCCCC-CCccEEEecCCCCCCCCCCCCCcccCcceEEEc
Q 046470 789 -------ISE-IIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPF-PKLKKIQIYSCPELKKLPLNSSSAKERRVVIEG 857 (888)
Q Consensus 789 -------~~~-~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~-p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~i~~ 857 (888)
+.. +.......+++|+.|++++|. ++.... ..+ ++|+.|++.+| +++.+|.... ...++..++-
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~l~~~L~~L~L~~N-~l~~ip~~~~-~l~~L~~L~L 480 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSVF--RCLPPKVKVLDLHNN-RIMSIPKDVT-HLQALQELNV 480 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGGG--SSCCTTCSEEECCSS-CCCCCCTTTT-SSCCCSEEEC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcchh--hhhcCcCCEEECCCC-cCcccChhhc-CCCCCCEEEC
Confidence 011 111123445666666666653 322111 122 68999999887 7888888766 3455555543
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=3.1e-21 Score=230.90 Aligned_cols=142 Identities=22% Similarity=0.231 Sum_probs=121.6
Q ss_pred CcccccCCcccccccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-
Q 046470 489 GFRLTEAPAVEEWEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS- 565 (888)
Q Consensus 489 ~~~~~~~~~~~~~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~- 565 (888)
+.....+|... ..++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.++.+|.
T Consensus 13 ~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 13 HLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp SSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh
Confidence 33444555322 2689999999999988764 7889999999999999999988889999999999999999999986
Q ss_pred hhhcccCCCEEeccCCcccccC-cccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 566 GISSLVSLHHLDLSWTEITGLP-QELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 566 ~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
.++++++|++|++++|.++.+| ..++++++|++|++++|.+....|. .++++++|++|++++|...
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCccc
Confidence 5999999999999999999986 6799999999999999977554444 4889999999999998765
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=234.43 Aligned_cols=344 Identities=16% Similarity=0.122 Sum_probs=220.0
Q ss_pred cccccccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCC
Q 046470 497 AVEEWEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSL 573 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L 573 (888)
.+..++++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++|.++.+|. .++++++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 56778899999999999888753 7889999999999999999988889999999999999999998865 68999999
Q ss_pred CEEeccCCcccc--cCcccccCCccceeccccccccCCccccccCCCCCC----cEEeccCCCCCCcccccccC------
Q 046470 574 HHLDLSWTEITG--LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKL----EVLRLLGCGSNCVTVTEEEG------ 641 (888)
Q Consensus 574 ~~L~L~~~~i~~--Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L----~~L~l~~~~~~~~~~~~~~~------ 641 (888)
++|++++|.++. +|..++++++|++|++++|.+ ..++...++.+++| ++|++++|............
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 999999999886 689999999999999999976 44443336666666 67777766543211000000
Q ss_pred ----c---------------------------------------ccc----------------cchhhHHHHhhcCCCCc
Q 046470 642 ----N---------------------------------------VLC----------------DDAGLLMKELLGLKHLN 662 (888)
Q Consensus 642 ----~---------------------------------------~~~----------------~~~~~~~~~L~~L~~L~ 662 (888)
+ ... .........+..+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 0 000 00001112234445555
Q ss_pred eEEEEEechhhHHhhhc---------------------C------------------CccccceEEEEEeecCCCccc--
Q 046470 663 FLSWSFRSSLAVQKFFK---------------------Y------------------PKLVSITQSVVVYQCECPLFN-- 701 (888)
Q Consensus 663 ~L~l~~~~~~~~~~~~~---------------------~------------------~~l~~~L~~L~l~~~~~~~~~-- 701 (888)
.|+++.+....++.... . ....+.|+.|+++++......
T Consensus 286 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp EEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEE
T ss_pred EEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccc
Confidence 55555443322211100 0 012346777777776654332
Q ss_pred cccccccCCcceEEeecCCcceeeecCCcc---c-----------ccc---ccccCCCccEEEEecCCCCCCCc-hhhhc
Q 046470 702 VLHLAYMENLQELHLEDSDLEEMRIDGPEE---V-----------KKL---FQSGFRSLSIVSVENCEKMKDLT-WLVFV 763 (888)
Q Consensus 702 ~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~---~-----------~~~---~~~~l~~L~~L~L~~c~~l~~l~-~l~~l 763 (888)
...+..+++|++|++++|.+..+... +.. . ... ....+++|+.|++++|.....++ .+..+
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred cccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 23366788899999988877766443 221 0 000 01234555555555553222222 34455
Q ss_pred cCcceEeeecccccchhcccccccccccccCccCccccccceeecccccccccc-CCCCCCCCCccEEEecCCCCCCCCC
Q 046470 764 QNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSI-YPNPLPFPKLKKIQIYSCPELKKLP 842 (888)
Q Consensus 764 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lP 842 (888)
++|+.|++++|...... .+..+..+++|+.|+|++| .++.+ +.....+++|+.|++.+| +++.+|
T Consensus 445 ~~L~~L~l~~n~l~~~~------------~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENF------------LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp TTCCEEECTTCEEGGGE------------ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred CcCcEEECcCCcCcccc------------chhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCC
Confidence 56666666554421111 1135678899999999998 46665 555667899999999998 688888
Q ss_pred CCCCcccCcceEEE
Q 046470 843 LNSSSAKERRVVIE 856 (888)
Q Consensus 843 ~~~~~~~~~l~~i~ 856 (888)
........++..++
T Consensus 511 ~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 511 DGIFDRLTSLQKIW 524 (570)
T ss_dssp TTTTTTCTTCCEEE
T ss_pred HHHhhcccCCcEEE
Confidence 76544445555554
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=8.7e-22 Score=230.97 Aligned_cols=269 Identities=19% Similarity=0.234 Sum_probs=221.1
Q ss_pred CCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEEeccCCcccccCc-ccccCCcccee
Q 046470 522 TSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDLSWTEITGLPQ-ELKALEKLRYL 599 (888)
Q Consensus 522 ~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L 599 (888)
.+++++.|++.+|.+..+|+.+|..+++|++|+|++|.++.+| ..++.+++|++|+|++|.++.+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4578899999999999999999999999999999999999885 589999999999999999999755 57999999999
Q ss_pred ccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhc
Q 046470 600 NLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFK 679 (888)
Q Consensus 600 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~ 679 (888)
++++|.+ ..+|...++++++|++|++++|..... ....+..+++|+.|+++.+......
T Consensus 129 ~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~N~l~~~~---- 187 (597)
T 3oja_B 129 VLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERI----------------EDDTFQATTSLQNLQLSSNRLTHVD---- 187 (597)
T ss_dssp ECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBC----------------CTTTTTTCTTCCEEECTTSCCSBCC----
T ss_pred EeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCC----------------ChhhhhcCCcCcEEECcCCCCCCcC----
Confidence 9999976 678887679999999999999977532 2335678899999999877654431
Q ss_pred CCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCch
Q 046470 680 YPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLTW 759 (888)
Q Consensus 680 ~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~ 759 (888)
....+.++.|.+.++.... +...++|+.|++++|.+..+... .+++|+.|+|++| .++.+++
T Consensus 188 -~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-----------~~~~L~~L~L~~n-~l~~~~~ 249 (597)
T 3oja_B 188 -LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-----------VNVELTILKLQHN-NLTDTAW 249 (597)
T ss_dssp -GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-----------CCSCCCEEECCSS-CCCCCGG
T ss_pred -hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-----------cCCCCCEEECCCC-CCCCChh
Confidence 1223578888887765422 34567899999999998866432 2578999999999 5777889
Q ss_pred hhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecCCCCCC
Q 046470 760 LVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELK 839 (888)
Q Consensus 760 l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~ 839 (888)
+..+++|+.|+|++|. ++.+++ ..+..+++|+.|+|++| .+..++.....+|+|+.|++++| .++
T Consensus 250 l~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~ 314 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNE-LEKIMY------------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLL 314 (597)
T ss_dssp GGGCTTCSEEECCSSC-CCEEES------------GGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCC
T ss_pred hccCCCCCEEECCCCc-cCCCCH------------HHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCC
Confidence 9999999999999965 555543 36778999999999998 68888877778999999999998 577
Q ss_pred CCCCC
Q 046470 840 KLPLN 844 (888)
Q Consensus 840 ~lP~~ 844 (888)
.+|..
T Consensus 315 ~i~~~ 319 (597)
T 3oja_B 315 HVERN 319 (597)
T ss_dssp CCGGG
T ss_pred ccCcc
Confidence 77764
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=2e-21 Score=226.41 Aligned_cols=134 Identities=17% Similarity=0.266 Sum_probs=113.2
Q ss_pred CcccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcc--cChhhhccc
Q 046470 496 PAVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSK--LPSGISSLV 571 (888)
Q Consensus 496 ~~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~--lp~~i~~L~ 571 (888)
..+..++++++|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|++++|.++. .|..+++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 35677899999999999998876 37889999999999999999999889999999999999999985 467899999
Q ss_pred CCCEEeccCCc-ccccC-cccccCCccceeccccccccCCccccccCCCCCCcEEeccCCC
Q 046470 572 SLHHLDLSWTE-ITGLP-QELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCG 630 (888)
Q Consensus 572 ~L~~L~L~~~~-i~~Lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 630 (888)
+|++|++++|. +..+| ..+.++++|++|++++|.+....|.. ++.+++|++|++.+|.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSB
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCc
Confidence 99999999997 67776 57999999999999999875556654 6666666666665544
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=8.5e-22 Score=237.98 Aligned_cols=331 Identities=18% Similarity=0.150 Sum_probs=204.6
Q ss_pred ccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCc-ccChhhhcccCCCEE
Q 046470 498 VEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALS-KLPSGISSLVSLHHL 576 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L 576 (888)
+..+++++.|++++|.+........+++|++|++++|.+....+. +..+++|++|++++|.++ .+|..++.+++|++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 456678999999999888766678899999999999998876666 899999999999999998 568899999999999
Q ss_pred eccCCcccc-cCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCccccccc----C---ccccc-c
Q 046470 577 DLSWTEITG-LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEE----G---NVLCD-D 647 (888)
Q Consensus 577 ~L~~~~i~~-Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~----~---~~~~~-~ 647 (888)
++++|.++. +|.. .+++|++|++++|.+...+|..+...+++|++|++++|........... . ..... .
T Consensus 253 ~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 253 NISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp ECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence 999998886 4543 8999999999999887788987334459999999999976522100000 0 00000 0
Q ss_pred h-hhHHHHhhcCCCCceEEEEEechh-hHHhhhcCCccccceEEEEEeecC--------------------------CCc
Q 046470 648 A-GLLMKELLGLKHLNFLSWSFRSSL-AVQKFFKYPKLVSITQSVVVYQCE--------------------------CPL 699 (888)
Q Consensus 648 ~-~~~~~~L~~L~~L~~L~l~~~~~~-~~~~~~~~~~l~~~L~~L~l~~~~--------------------------~~~ 699 (888)
. ......+..+++|+.|+++.+... ..+... ..+...++.|++.++. ...
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHH--HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 0 111223556666666666554432 000000 0000133344433332 211
Q ss_pred cccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccccc
Q 046470 700 FNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVE 778 (888)
Q Consensus 700 ~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~ 778 (888)
..+..+..+++|+.|++++|.+....+..+ ..+++|+.|+|++|.....+| .+..+++|+.|+|++|....
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSL--------GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGG--------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHH--------hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 111123334444444444443332222221 135556666665554332333 35555666666666544222
Q ss_pred hhcccccccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecCCCCCCCCCCCCCcccCcceEE
Q 046470 779 DIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLPLNSSSAKERRVVI 855 (888)
Q Consensus 779 ~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~i 855 (888)
.++ ..+..+++|+.|+|++|.-...++.....+++|+.|++++|.-...+|..... ..++..+
T Consensus 481 ~~p-------------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L 543 (768)
T 3rgz_A 481 EIP-------------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWL 543 (768)
T ss_dssp CCC-------------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEE
T ss_pred cCC-------------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEE
Confidence 221 35677889999999988644467766777899999999998654467755443 2444444
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=2e-21 Score=232.94 Aligned_cols=318 Identities=15% Similarity=0.139 Sum_probs=213.2
Q ss_pred ccccceEEEEecCCCcc-CC-CCCCCCchhhhhhccCC-ccc--ccchHHhcCC-------cccEEEcCCCCCcccCh--
Q 046470 500 EWEGAKRISLRGNRFDS-LS-EIPTSPRLITLLLIANS-IDE--ITDGFFQSMS-------SLRVLSLGSNALSKLPS-- 565 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~-l~-~~~~~~~Lr~L~l~~n~-l~~--~~~~~~~~l~-------~L~~L~Ls~~~i~~lp~-- 565 (888)
.+++++.|++++|.+.. +| .+..+++|++|++++|. ++. +|.. +..++ +|++|+|++|.++.+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 67788888888887543 44 36678888888888887 765 4443 44444 88888888888888887
Q ss_pred hhhcccCCCEEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCC-CcEEeccCCCCCCcccccccC---
Q 046470 566 GISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSK-LEVLRLLGCGSNCVTVTEEEG--- 641 (888)
Q Consensus 566 ~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~~~~--- 641 (888)
.++++++|++|+|++|.++.+| .++++++|++|++++|.+. .+|.. +.++++ |++|++++|...... .....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLKYIP-NIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCCSCC-SCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHH-HhhccccCCEEECcCCCCCcCc-hhhhcccc
Confidence 7888888888888888888888 7888888888888888764 77766 777887 888888887765221 00000
Q ss_pred ------cccccchhhHH----HHhh--cCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCcccccccc---
Q 046470 642 ------NVLCDDAGLLM----KELL--GLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLA--- 706 (888)
Q Consensus 642 ------~~~~~~~~~~~----~~L~--~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~--- 706 (888)
.+........+ ..+. .+.+|+.|+++.+....++.... ...+.|+.|.++++.........+.
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~--~~l~~L~~L~Ls~N~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF--ATGSPISTIILSNNLMTSIPENSLKPKD 721 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH--HTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH--ccCCCCCEEECCCCcCCccChHHhcccc
Confidence 00000000000 1111 23478888888776654332111 1235789999998876544332222
Q ss_pred ----ccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhc
Q 046470 707 ----YMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDII 781 (888)
Q Consensus 707 ----~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~ 781 (888)
++++|+.|++++|.+..++.... ...+++|+.|+|++|. +..+| .+..+++|+.|+|++|..+..-
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~~lp~~l~-------~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N- 792 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLTSLSDDFR-------ATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGN- 792 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCCCCCGGGS-------TTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCC-
T ss_pred ccccccCCccEEECCCCCCccchHHhh-------hccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccc-
Confidence 34599999999999885533221 1258999999999995 55565 6889999999999874411100
Q ss_pred ccccccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecCCCCCCCCCC
Q 046470 782 SVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLPL 843 (888)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP~ 843 (888)
.+....+..+..+++|+.|+|++|. +..+|... +++|+.|++++|+ +..++.
T Consensus 793 ------~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~LdLs~N~-l~~i~~ 844 (876)
T 4ecn_A 793 ------RILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNP-NISIDV 844 (876)
T ss_dssp ------BCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC--CSSSCEEECCSCT-TCEEEC
T ss_pred ------cccccChHHHhcCCCCCEEECCCCC-CCccCHhh--cCCCCEEECCCCC-CCccCh
Confidence 0001111367789999999999994 68887664 4899999999997 554443
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=6.8e-22 Score=233.23 Aligned_cols=313 Identities=15% Similarity=0.161 Sum_probs=194.7
Q ss_pred ccccceEEEEecCCCcc-CC-CCCCCCchhhhhhccCC-ccc--ccchHHhcC------CcccEEEcCCCCCcccCh--h
Q 046470 500 EWEGAKRISLRGNRFDS-LS-EIPTSPRLITLLLIANS-IDE--ITDGFFQSM------SSLRVLSLGSNALSKLPS--G 566 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~-l~-~~~~~~~Lr~L~l~~n~-l~~--~~~~~~~~l------~~L~~L~Ls~~~i~~lp~--~ 566 (888)
.+++++.|++++|.+.. +| .+..+++|++|++++|. ++. +|.. +..+ ++|++|++++|.++.+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 45666666666665433 33 34556666666666665 554 3333 4443 666666666666666666 6
Q ss_pred hhcccCCCEEeccCCccc-ccCcccccCCccceeccccccccCCccccccCCCCC-CcEEeccCCCCCCcccccccC---
Q 046470 567 ISSLVSLHHLDLSWTEIT-GLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSK-LEVLRLLGCGSNCVTVTEEEG--- 641 (888)
Q Consensus 567 i~~L~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~~~~--- 641 (888)
++++++|++|++++|.++ .+| .++.+++|++|++++|.+ ..+|.. +.++++ |++|++++|...... .....
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l-~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp-~~~~~~~l 401 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI-TEIPAN-FCGFTEQVENLSFAHNKLKYIP-NIFDAKSV 401 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE-EECCTT-SEEECTTCCEEECCSSCCSSCC-SCCCTTCS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc-ccccHh-hhhhcccCcEEEccCCcCcccc-hhhhhccc
Confidence 666666666666666666 566 666666666666666654 355554 556666 666666666544211 00000
Q ss_pred -cc-----cc-cchhhHHHHhh-------cCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccc
Q 046470 642 -NV-----LC-DDAGLLMKELL-------GLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAY 707 (888)
Q Consensus 642 -~~-----~~-~~~~~~~~~L~-------~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~ 707 (888)
.. .. ......+..+. .+.+|+.|+++.+....++... ....+.|+.|.+.++.........+..
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 479 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNMLTEIPKNSLKD 479 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH--HHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHH--HccCCCCCEEECCCCCCCCcCHHHhcc
Confidence 00 00 00111122334 5678999999887765433211 011357899999988775444333333
Q ss_pred -------cCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeeccc----
Q 046470 708 -------MENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCH---- 775 (888)
Q Consensus 708 -------l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~---- 775 (888)
+++|+.|++++|.+..++.... ...+++|+.|+|++|. ++.+| .+..+++|+.|+|++|.
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~-------~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFR-------ATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCCBCCGGGS-------TTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTC
T ss_pred ccccccccCCccEEECcCCcCCccChhhh-------hccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCccccc
Confidence 3499999999999986543322 0158999999999995 44455 78899999999997643
Q ss_pred --ccchhcccccccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecCCCCCCCCCCC
Q 046470 776 --AVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELKKLPLN 844 (888)
Q Consensus 776 --~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lP~~ 844 (888)
....++ ..+..+++|+.|+|++|. +..++... +++|+.|++++|+ ++.++..
T Consensus 552 N~l~~~~p-------------~~l~~l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N~-l~~~~~~ 605 (636)
T 4eco_A 552 NRTLREWP-------------EGITLCPSLTQLQIGSND-IRKVNEKI--TPNISVLDIKDNP-NISIDLS 605 (636)
T ss_dssp CBCCCCCC-------------TTGGGCSSCCEEECCSSC-CCBCCSCC--CTTCCEEECCSCT-TCEEECT
T ss_pred CcccccCh-------------HHHhcCCCCCEEECCCCc-CCccCHhH--hCcCCEEECcCCC-CccccHH
Confidence 222222 366789999999999994 68887654 3899999999986 5555543
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.9e-21 Score=209.79 Aligned_cols=111 Identities=19% Similarity=0.282 Sum_probs=56.7
Q ss_pred CCCccEEEEecCCCCCCC-chhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccC
Q 046470 740 FRSLSIVSVENCEKMKDL-TWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIY 818 (888)
Q Consensus 740 l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~ 818 (888)
+++|+.|+|++|. +..+ +.++.+++|++|+|++|+....++. .+..+++|+.|+|++|..+..++
T Consensus 205 l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~-------------~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 205 LQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP-------------IFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCC-------------CTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHH-------------HhcCCCCCCEEECCCCCchhhcc
Confidence 4555555555553 2222 2455555555555555554443322 34455556666665555555555
Q ss_pred CCCCCCCCccEEEecCCCCCCCCCCCCCcccCcceEEEchHhHHhhc
Q 046470 819 PNPLPFPKLKKIQIYSCPELKKLPLNSSSAKERRVVIEGTKKWWEEL 865 (888)
Q Consensus 819 ~~~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~i~~~~~~~~~l 865 (888)
.....+++|+.|++.+|+.++.+|...... .++..+.....+...+
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQL 316 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC-
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHH
Confidence 555555666666666666555555544432 4455555444444333
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=7.9e-21 Score=219.67 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=90.8
Q ss_pred cccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcc--cChhhhcccC
Q 046470 497 AVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSK--LPSGISSLVS 572 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~--lp~~i~~L~~ 572 (888)
.+..+++++.|++++|.+..++ .+..+++|++|++++|.++.+|.. .+++|++|+|++|.++. +|..++++++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCc
Confidence 4677899999999999998873 478999999999999999988875 79999999999999986 5789999999
Q ss_pred CCEEeccCCcccccCcccccCCcc--ceeccccccc
Q 046470 573 LHHLDLSWTEITGLPQELKALEKL--RYLNLEHAYM 606 (888)
Q Consensus 573 L~~L~L~~~~i~~Lp~~i~~L~~L--~~L~l~~~~~ 606 (888)
|++|++++|.++. ..+..+++| ++|++++|.+
T Consensus 117 L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 117 LKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 9999999998876 346666777 8888877765
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.7e-21 Score=208.83 Aligned_cols=129 Identities=18% Similarity=0.288 Sum_probs=87.4
Q ss_pred ccceEEEEecCCCcc---CC-CCCCCCchhhhhhcc-CCcccccchHHhcCCcccEEEcCCCCCc-ccChhhhcccCCCE
Q 046470 502 EGAKRISLRGNRFDS---LS-EIPTSPRLITLLLIA-NSIDEITDGFFQSMSSLRVLSLGSNALS-KLPSGISSLVSLHH 575 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~---l~-~~~~~~~Lr~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~ 575 (888)
.+++.|++++|.+.. ++ .+..+++|++|++++ |.+....+..|.++++|++|+|++|.++ .+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777763 33 356667777777774 6665444444677777777777777776 56777777777777
Q ss_pred EeccCCccc-ccCcccccCCccceeccccccccCCccccccCCCC-CCcEEeccCCCC
Q 046470 576 LDLSWTEIT-GLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFS-KLEVLRLLGCGS 631 (888)
Q Consensus 576 L~L~~~~i~-~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~-~L~~L~l~~~~~ 631 (888)
|++++|.++ .+|..+..+++|++|++++|.+...+|.. +..++ +|++|++++|..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee
Confidence 777777776 46777777777777777777665466655 66666 777777776654
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.4e-20 Score=202.93 Aligned_cols=229 Identities=20% Similarity=0.308 Sum_probs=153.6
Q ss_pred CchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecccc
Q 046470 524 PRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEH 603 (888)
Q Consensus 524 ~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 603 (888)
+++++|++++|.++.+|.. +..+++|++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 4455555555555555544 344555555555555555555555555555555555555555555555555555555555
Q ss_pred ccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCcc
Q 046470 604 AYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKL 683 (888)
Q Consensus 604 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l 683 (888)
|+....+|.. +.. +. ....+.++++|+.|+++.+....
T Consensus 160 n~~~~~~p~~-~~~------~~-------------------------~~~~~~~l~~L~~L~L~~n~l~~---------- 197 (328)
T 4fcg_A 160 CPELTELPEP-LAS------TD-------------------------ASGEHQGLVNLQSLRLEWTGIRS---------- 197 (328)
T ss_dssp ETTCCCCCSC-SEE------EC--------------------------CCCEEESTTCCEEEEEEECCCC----------
T ss_pred CCCccccChh-Hhh------cc-------------------------chhhhccCCCCCEEECcCCCcCc----------
Confidence 5554444443 111 00 00123456666666666554221
Q ss_pred ccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc-hhhh
Q 046470 684 VSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT-WLVF 762 (888)
Q Consensus 684 ~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~ 762 (888)
. +..+..+++|++|++++|.+..++.. + ..+++|+.|+|++|.....++ .++.
T Consensus 198 ----------------l-p~~l~~l~~L~~L~L~~N~l~~l~~~-l--------~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 198 ----------------L-PASIANLQNLKSLKIRNSPLSALGPA-I--------HHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp ----------------C-CGGGGGCTTCCEEEEESSCCCCCCGG-G--------GGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred ----------------c-hHhhcCCCCCCEEEccCCCCCcCchh-h--------ccCCCCCEEECcCCcchhhhHHHhcC
Confidence 1 11267889999999999998865332 2 358999999999998777766 6889
Q ss_pred ccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecC
Q 046470 763 VQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYS 834 (888)
Q Consensus 763 l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~ 834 (888)
+++|++|+|++|+.++.++. .+..+++|+.|+|++|+.+..+|.....+++|+.+.+..
T Consensus 252 l~~L~~L~L~~n~~~~~~p~-------------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPL-------------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCT-------------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCCEEECCCCCchhhcch-------------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 99999999999988776654 577899999999999999999999888999999998864
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=2.1e-20 Score=223.72 Aligned_cols=311 Identities=17% Similarity=0.183 Sum_probs=193.2
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCcc
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTEI 583 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~i 583 (888)
+.++.+++.+..+|... .+++++|++++|.++.+++..|.++++|++|+|++|.++.+ |..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 45778888888887522 27899999999999999998899999999999999999977 77899999999999999999
Q ss_pred cccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCc
Q 046470 584 TGLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLN 662 (888)
Q Consensus 584 ~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 662 (888)
+.+|. .++++++|++|++++|.+ ..+|...++++++|++|++++|..... .+..+.++++|+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------~~~~~~~l~~L~ 148 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSST----------------KLGTQVQLENLQ 148 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCC----------------CCCSSSCCTTCC
T ss_pred CccChhhhccCCCCCEEECCCCcc-CccChhHccccCCCCEEECCCCccccc----------------CchhhcccccCC
Confidence 99987 599999999999999976 566655589999999999999976532 112345667777
Q ss_pred eEEEEEechhhHHhh-hcCCccccceEEEEEeecCCCcccccccccc---------------------------CCcceE
Q 046470 663 FLSWSFRSSLAVQKF-FKYPKLVSITQSVVVYQCECPLFNVLHLAYM---------------------------ENLQEL 714 (888)
Q Consensus 663 ~L~l~~~~~~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l---------------------------~~L~~L 714 (888)
.|+++.+........ ... ...+.|+.|++.++.........+..+ ++|+.|
T Consensus 149 ~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L 227 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDI-FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227 (680)
T ss_dssp EEECCSSCCCCBCHHHHGG-GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEE
T ss_pred EEEccCCcccccCHHHhhc-cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEE
Confidence 777766543322110 000 011356666666554333222222222 344555
Q ss_pred EeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCC--chhhhccCcceEeeecccccchhccccc--c----
Q 046470 715 HLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL--TWLVFVQNLKELEISRCHAVEDIISVDK--L---- 786 (888)
Q Consensus 715 ~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~--~---- 786 (888)
+++++.+....+.++.. ...++|+.|+|++|. +..+ ..++.+++|++|++++|. +..++.... .
T Consensus 228 ~L~~n~l~~~~~~~~~~------l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 228 SLSNSQLSTTSNTTFLG------LKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVR 299 (680)
T ss_dssp ECTTSCCCEECTTTTGG------GGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCC-BSEECTTTTTTCTTCC
T ss_pred EccCCcccccChhHhhc------cCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCc-cCccChhhhcCCCCcc
Confidence 55555544443333221 011236666666553 3322 135555666666665543 322221000 0
Q ss_pred ---------------cccccccCccCccccccceeeccccccccccCC-CCCCCCCccEEEecCCC-CCCCCCC
Q 046470 787 ---------------RDISEIIGSEHNFFAQLEALNIFNNVNLKSIYP-NPLPFPKLKKIQIYSCP-ELKKLPL 843 (888)
Q Consensus 787 ---------------~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~-~L~~lP~ 843 (888)
..++.+....+..+++|++|+++++ .+..+.. ....+++|+.|++.+|. .+..+|.
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred EEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence 0000111123455677777777766 3444432 24456777777777764 2444443
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=230.60 Aligned_cols=293 Identities=16% Similarity=0.160 Sum_probs=205.4
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCC-CCccc-ChhhhcccCCCEEeccCCc
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSN-ALSKL-PSGISSLVSLHHLDLSWTE 582 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~-~i~~l-p~~i~~L~~L~~L~L~~~~ 582 (888)
+..+.++++++.+|. ..++|++|++++|.++.+++..|.++++|++|+|++| .+..+ |..++++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456777888888887 5689999999999999998878999999999999999 45566 7889999999999999999
Q ss_pred cccc-CcccccCCccceeccccccccCCccc-cccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCC
Q 046470 583 ITGL-PQELKALEKLRYLNLEHAYMLSIIPH-QLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKH 660 (888)
Q Consensus 583 i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 660 (888)
++.+ |..++++++|++|++++|.+...+|. ..++++++|++|++++|..... .....+.++++
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~---------------~~~~~~~~L~~ 149 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL---------------YLHPSFGKLNS 149 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC---------------CCCGGGGTCSS
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc---------------ccchhHhhCCC
Confidence 9986 88999999999999999987655553 3488999999999999987532 11135678888
Q ss_pred CceEEEEEechhh-----HHhhhcCCccccceEEEEEeecCCCccccccccc----------------------------
Q 046470 661 LNFLSWSFRSSLA-----VQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAY---------------------------- 707 (888)
Q Consensus 661 L~~L~l~~~~~~~-----~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~---------------------------- 707 (888)
|+.|+++.+.... +..+.. ..|+.|.+..+.........+..
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQG-----KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHH-----CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred CCEEECCCCcCCeeCHHHcccccC-----CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 8899888765422 111100 23333333333222111111111
Q ss_pred ----------------------------------------cCCcceEEeecCCcceeeecCCccccccccccCCCccEEE
Q 046470 708 ----------------------------------------MENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVS 747 (888)
Q Consensus 708 ----------------------------------------l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~ 747 (888)
.++|+.|++++|.+..+.+..+. .+++|+.|+
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~ 296 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--------TLKDLKVLN 296 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--------SCCCCCEEE
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--------cCCCCCEEE
Confidence 13455555555555544333332 467777777
Q ss_pred EecCCCCCCC-c-hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCC-CCCC
Q 046470 748 VENCEKMKDL-T-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPN-PLPF 824 (888)
Q Consensus 748 L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~ 824 (888)
|++|. +..+ + .+..+++|++|+|++|. ++.+.. ..+..+++|+.|+++++ .+..++.. ...+
T Consensus 297 L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l 361 (844)
T 3j0a_A 297 LAYNK-INKIADEAFYGLDNLQVLNLSYNL-LGELYS------------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFL 361 (844)
T ss_dssp EESCC-CCEECTTTTTTCSSCCEEEEESCC-CSCCCS------------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSC
T ss_pred CCCCc-CCCCChHHhcCCCCCCEEECCCCC-CCccCH------------HHhcCCCCCCEEECCCC-CCCccChhhhcCC
Confidence 77774 3333 2 46677778888887754 444433 36677889999999888 56666543 4458
Q ss_pred CCccEEEecCCCCCCCCCC
Q 046470 825 PKLKKIQIYSCPELKKLPL 843 (888)
Q Consensus 825 p~L~~L~i~~C~~L~~lP~ 843 (888)
++|+.|++.+| .++.+|.
T Consensus 362 ~~L~~L~Ls~N-~l~~i~~ 379 (844)
T 3j0a_A 362 EKLQTLDLRDN-ALTTIHF 379 (844)
T ss_dssp CCCCEEEEETC-CSCCCSS
T ss_pred CCCCEEECCCC-CCCcccC
Confidence 89999999886 5676665
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=204.40 Aligned_cols=269 Identities=22% Similarity=0.221 Sum_probs=157.0
Q ss_pred EEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCccc
Q 046470 506 RISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTEIT 584 (888)
Q Consensus 506 ~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~i~ 584 (888)
..+.+++.++.+|.. -.++|++|++++|.++.++...|.++++|++|++++|.++.+ |..++++++|++|++++|.++
T Consensus 35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 356667777776642 235788888888888777776678888888888888888766 456788888888888888888
Q ss_pred ccCcc-cccCCccceeccccccccCCccc-cccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCc
Q 046470 585 GLPQE-LKALEKLRYLNLEHAYMLSIIPH-QLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLN 662 (888)
Q Consensus 585 ~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 662 (888)
.+|.. ++++++|++|++++|.+ ..+|. ..+.++++|++|++++|.... ......+.++++|+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFT---------------KIQRKDFAGLTFLE 177 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCC---------------EECTTTTTTCCEEE
T ss_pred cCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCcccc---------------ccCHHHccCCCCCC
Confidence 87765 77888888888888865 56665 447778888888888774321 11223456677778
Q ss_pred eEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCC
Q 046470 663 FLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRS 742 (888)
Q Consensus 663 ~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~ 742 (888)
.|+++.+..... ....+..+++|++|++++|.+..+..... ..+++
T Consensus 178 ~L~l~~n~l~~~--------------------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------~~~~~ 223 (353)
T 2z80_A 178 ELEIDASDLQSY--------------------------EPKSLKSIQNVSHLILHMKQHILLLEIFV--------DVTSS 223 (353)
T ss_dssp EEEEEETTCCEE--------------------------CTTTTTTCSEEEEEEEECSCSTTHHHHHH--------HHTTT
T ss_pred EEECCCCCcCcc--------------------------CHHHHhccccCCeecCCCCccccchhhhh--------hhccc
Confidence 888776543221 01113334455555555544432211110 12445
Q ss_pred ccEEEEecCCCCCCCc-----hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeecccccccccc
Q 046470 743 LSIVSVENCEKMKDLT-----WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSI 817 (888)
Q Consensus 743 L~~L~L~~c~~l~~l~-----~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i 817 (888)
|+.|++++|. ++.++ .....+.++.++++++. +.+... ..+. ..+..+++|+.|+|++| .++.+
T Consensus 224 L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l-------~~l~-~~l~~l~~L~~L~Ls~N-~l~~i 292 (353)
T 2z80_A 224 VECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVK-ITDESL-------FQVM-KLLNQISGLLELEFSRN-QLKSV 292 (353)
T ss_dssp EEEEEEESCB-CTTCCCC------CCCCCCEEEEESCB-CCHHHH-------HHHH-HHHHTCTTCCEEECCSS-CCCCC
T ss_pred ccEEECCCCc-cccccccccccccccchhhcccccccc-ccCcch-------hhhH-HHHhcccCCCEEECCCC-CCCcc
Confidence 5555555552 22211 12233445555555532 221100 0000 13445666666666666 45566
Q ss_pred CCCC-CCCCCccEEEecCCC
Q 046470 818 YPNP-LPFPKLKKIQIYSCP 836 (888)
Q Consensus 818 ~~~~-~~~p~L~~L~i~~C~ 836 (888)
+... ..+++|++|++.+|+
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHHhcCCCCCEEEeeCCC
Confidence 5543 456677777776664
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=203.32 Aligned_cols=261 Identities=23% Similarity=0.301 Sum_probs=197.9
Q ss_pred cccccCCcccccccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-
Q 046470 490 FRLTEAPAVEEWEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG- 566 (888)
Q Consensus 490 ~~~~~~~~~~~~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~- 566 (888)
.....+|. .-.++++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++|.++.+|..
T Consensus 41 ~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 41 GSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp TTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred CCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 34444443 223589999999999988765 78899999999999999998888899999999999999999999876
Q ss_pred hhcccCCCEEeccCCcccccCc--ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCccc
Q 046470 567 ISSLVSLHHLDLSWTEITGLPQ--ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVL 644 (888)
Q Consensus 567 i~~L~~L~~L~L~~~~i~~Lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 644 (888)
++++++|++|++++|.++.+|. .+.++++|++|++++|.....++...+.++++|++|++++|.....
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------- 189 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY---------- 189 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE----------
T ss_pred hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc----------
Confidence 8899999999999999999987 7899999999999999655667655589999999999998876521
Q ss_pred ccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCccee
Q 046470 645 CDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEM 724 (888)
Q Consensus 645 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l 724 (888)
....+..+++|+.|+++.+...... ...+..+++|+.|++++|.+..+
T Consensus 190 ------~~~~l~~l~~L~~L~l~~n~l~~~~--------------------------~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 190 ------EPKSLKSIQNVSHLILHMKQHILLL--------------------------EIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp ------CTTTTTTCSEEEEEEEECSCSTTHH--------------------------HHHHHHTTTEEEEEEESCBCTTC
T ss_pred ------CHHHHhccccCCeecCCCCccccch--------------------------hhhhhhcccccEEECCCCccccc
Confidence 2344566777777777765432221 11244578999999999888765
Q ss_pred eecCCccccccccccCCCccEEEEecCCCCCC-----C-chhhhccCcceEeeecccccchhcccccccccccccCccCc
Q 046470 725 RIDGPEEVKKLFQSGFRSLSIVSVENCEKMKD-----L-TWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHN 798 (888)
Q Consensus 725 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l-~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~ 798 (888)
.+..+. .......++.++++++. +.. + .++..+++|+.|+|++|. ++.++. ..+.
T Consensus 238 ~~~~l~-----~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~------------~~~~ 298 (353)
T 2z80_A 238 HFSELS-----TGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPD------------GIFD 298 (353)
T ss_dssp CCC-----------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCT------------TTTT
T ss_pred cccccc-----cccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCC-CCccCH------------HHHh
Confidence 443322 11246778889998874 332 2 257789999999999964 666654 2357
Q ss_pred cccccceeeccccc
Q 046470 799 FFAQLEALNIFNNV 812 (888)
Q Consensus 799 ~~p~L~~L~L~~~~ 812 (888)
.+++|+.|+|++++
T Consensus 299 ~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 299 RLTSLQKIWLHTNP 312 (353)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCCCCEEEeeCCC
Confidence 88999999999885
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=2.1e-19 Score=213.35 Aligned_cols=142 Identities=28% Similarity=0.331 Sum_probs=121.2
Q ss_pred cccccCCcccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-h
Q 046470 490 FRLTEAPAVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-G 566 (888)
Q Consensus 490 ~~~~~~~~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~ 566 (888)
.+...+|.- -...+++|++++|.++.++ .+..+++|++|++++|.++.++++.|.++++|++|+|++|.++.+|. .
T Consensus 41 ~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 41 LNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp SCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred CCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 345555531 1247999999999999987 47899999999999999999999999999999999999999999975 5
Q ss_pred hhcccCCCEEeccCCcccccCc-ccccCCccceeccccccccC-CccccccCCCCCCcEEeccCCCCCC
Q 046470 567 ISSLVSLHHLDLSWTEITGLPQ-ELKALEKLRYLNLEHAYMLS-IIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 567 i~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
|+++.+|++|+|++|+++.+|. .++++++|++|++++|.+.. .+|.. ++.+++|++|++++|....
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccc
Confidence 8999999999999999999876 58999999999999997643 34554 8899999999999987653
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.7e-19 Score=195.28 Aligned_cols=247 Identities=16% Similarity=0.194 Sum_probs=161.1
Q ss_pred CchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEEeccCCccccc-CcccccCCccceecc
Q 046470 524 PRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHLDLSWTEITGL-PQELKALEKLRYLNL 601 (888)
Q Consensus 524 ~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l 601 (888)
.++++++++++.++.+|..+ .+.|++|++++|.++.+|. .++++++|++|++++|.++.+ |..+.++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 47899999999998888753 3789999999999998865 799999999999999999997 888999999999999
Q ss_pred ccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCC
Q 046470 602 EHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYP 681 (888)
Q Consensus 602 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~ 681 (888)
++|.+ ..+|.. +. ++|++|++++|..... ....+.++++|+.|+++.+.......
T Consensus 108 s~n~l-~~l~~~-~~--~~L~~L~l~~n~l~~~----------------~~~~~~~l~~L~~L~l~~n~l~~~~~----- 162 (330)
T 1xku_A 108 SKNQL-KELPEK-MP--KTLQELRVHENEITKV----------------RKSVFNGLNQMIVVELGTNPLKSSGI----- 162 (330)
T ss_dssp CSSCC-SBCCSS-CC--TTCCEEECCSSCCCBB----------------CHHHHTTCTTCCEEECCSSCCCGGGB-----
T ss_pred CCCcC-CccChh-hc--ccccEEECCCCccccc----------------CHhHhcCCccccEEECCCCcCCccCc-----
Confidence 99975 678876 32 7999999999876532 34567888999999887665432111
Q ss_pred ccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCC--ch
Q 046470 682 KLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL--TW 759 (888)
Q Consensus 682 ~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~ 759 (888)
....+..+++|++|++++|.+..++.. .+++|+.|++++|. ++.+ ..
T Consensus 163 -------------------~~~~~~~l~~L~~L~l~~n~l~~l~~~-----------~~~~L~~L~l~~n~-l~~~~~~~ 211 (330)
T 1xku_A 163 -------------------ENGAFQGMKKLSYIRIADTNITTIPQG-----------LPPSLTELHLDGNK-ITKVDAAS 211 (330)
T ss_dssp -------------------CTTGGGGCTTCCEEECCSSCCCSCCSS-----------CCTTCSEEECTTSC-CCEECTGG
T ss_pred -------------------ChhhccCCCCcCEEECCCCccccCCcc-----------ccccCCEEECCCCc-CCccCHHH
Confidence 111244455555555555554432111 12455555555552 3322 23
Q ss_pred hhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecCCCCCC
Q 046470 760 LVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYSCPELK 839 (888)
Q Consensus 760 l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~ 839 (888)
+..+++|+.|+|++|. ++.++. ..+..+++|+.|+|++| .+..++.....+++|+.|++.+| +++
T Consensus 212 ~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~ 276 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNS-ISAVDN------------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NIS 276 (330)
T ss_dssp GTTCTTCCEEECCSSC-CCEECT------------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCC
T ss_pred hcCCCCCCEEECCCCc-CceeCh------------hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCC
Confidence 4555555555555533 333322 13344555555555555 34455544445555555555554 355
Q ss_pred CCCCC
Q 046470 840 KLPLN 844 (888)
Q Consensus 840 ~lP~~ 844 (888)
.+|..
T Consensus 277 ~~~~~ 281 (330)
T 1xku_A 277 AIGSN 281 (330)
T ss_dssp CCCTT
T ss_pred ccChh
Confidence 55443
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=1.7e-19 Score=193.03 Aligned_cols=126 Identities=22% Similarity=0.320 Sum_probs=104.7
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc---ChhhhcccCCCEEeccCC
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL---PSGISSLVSLHHLDLSWT 581 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~ 581 (888)
+.++.+++.++.+|. .-.++|++|++++|.++.++...|.++++|++|+|++|.++.+ |..+..+.+|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 356777777877775 2346899999999999999888889999999999999988855 678888999999999999
Q ss_pred cccccCcccccCCccceeccccccccCCccc-cccCCCCCCcEEeccCCCCC
Q 046470 582 EITGLPQELKALEKLRYLNLEHAYMLSIIPH-QLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 582 ~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 632 (888)
.++.+|..+..+++|++|++++|.+ ..++. ..+.++++|++|++++|...
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred ccccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCC
Confidence 9999998899999999999999976 44443 34888999999999887654
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=5.9e-20 Score=207.17 Aligned_cols=240 Identities=16% Similarity=0.213 Sum_probs=109.9
Q ss_pred EEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEEeccCCccc
Q 046470 506 RISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDLSWTEIT 584 (888)
Q Consensus 506 ~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~i~ 584 (888)
.++..++.+..+|.. -.++++.|++++|.++.++...|.++++|++|+|++|.++.++ ..+.++++|++|+|++|.++
T Consensus 47 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 47 KVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp EEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred EEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 344444444444421 1244555555555555555444555555555555555555442 34555555555555555555
Q ss_pred ccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCce
Q 046470 585 GLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNF 663 (888)
Q Consensus 585 ~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 663 (888)
.+|. .+..+++|++|++++|.+ ..+|...+.++++|++|++.+|..... .....+.++++|+.
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~---------------i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSY---------------ISEGAFEGLSNLRY 189 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCE---------------ECTTTTTTCSSCCE
T ss_pred eeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcce---------------eCcchhhcccccCe
Confidence 5443 355555555555555543 334433355555555555554332210 01112334444444
Q ss_pred EEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCc
Q 046470 664 LSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSL 743 (888)
Q Consensus 664 L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L 743 (888)
|+++.+....++.+ .....|+.|+++++.........+..+++|+.|++++|.+..+.+..+. .+++|
T Consensus 190 L~L~~n~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L 257 (440)
T 3zyj_A 190 LNLAMCNLREIPNL----TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD--------NLQSL 257 (440)
T ss_dssp EECTTSCCSSCCCC----TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST--------TCTTC
T ss_pred ecCCCCcCcccccc----CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc--------CCCCC
Confidence 44443322211100 0011233333333332222223355556666666666665555443332 35566
Q ss_pred cEEEEecCCCCCCCc--hhhhccCcceEeeeccc
Q 046470 744 SIVSVENCEKMKDLT--WLVFVQNLKELEISRCH 775 (888)
Q Consensus 744 ~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~ 775 (888)
+.|+|++| .++.++ .+..+++|+.|+|++|+
T Consensus 258 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 66666665 344433 24455666666665543
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=6.8e-20 Score=207.45 Aligned_cols=239 Identities=19% Similarity=0.234 Sum_probs=114.6
Q ss_pred EEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCccc
Q 046470 506 RISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTEIT 584 (888)
Q Consensus 506 ~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~i~ 584 (888)
.++..++.+..+|.. -.+++++|++++|.++.+++..|.++++|++|+|++|.|+.+ |..+.++.+|++|+|++|.++
T Consensus 58 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 344444444444421 124555566666555555555555566666666666655544 244555566666666666555
Q ss_pred ccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCce
Q 046470 585 GLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNF 663 (888)
Q Consensus 585 ~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 663 (888)
.+|.. +..+++|++|++++|.+ ..+|...+.++++|++|++.+|..... .....+..+++|+.
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~---------------i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEY---------------ISEGAFEGLFNLKY 200 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCE---------------ECTTTTTTCTTCCE
T ss_pred ccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccc---------------cChhhccCCCCCCE
Confidence 55433 55556666666665543 344444455566666666655433211 01112334445555
Q ss_pred EEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCc
Q 046470 664 LSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSL 743 (888)
Q Consensus 664 L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L 743 (888)
|+++.+....++.+ .....|+.|+++++.........+..+++|+.|++++|.+..+.+..+. .+++|
T Consensus 201 L~L~~n~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L 268 (452)
T 3zyi_A 201 LNLGMCNIKDMPNL----TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD--------GLASL 268 (452)
T ss_dssp EECTTSCCSSCCCC----TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT--------TCTTC
T ss_pred EECCCCcccccccc----cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc--------CCCCC
Confidence 55443332211100 0011233333333333223333345555666666666555544443332 35556
Q ss_pred cEEEEecCCCCCCCc--hhhhccCcceEeeecc
Q 046470 744 SIVSVENCEKMKDLT--WLVFVQNLKELEISRC 774 (888)
Q Consensus 744 ~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c 774 (888)
+.|+|++| .++.++ .+..+++|+.|+|++|
T Consensus 269 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 269 VELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 66666555 344433 2445555666665554
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=9.8e-20 Score=197.25 Aligned_cols=263 Identities=16% Similarity=0.200 Sum_probs=191.5
Q ss_pred CchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCccccc-CcccccCCccceecc
Q 046470 524 PRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTEITGL-PQELKALEKLRYLNL 601 (888)
Q Consensus 524 ~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l 601 (888)
.++++++++++.++.+|..+ .++|++|++++|.++.+ |..++++++|++|++++|.++.+ |..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 47899999999999888764 47899999999999988 55899999999999999999997 778999999999999
Q ss_pred ccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCC
Q 046470 602 EHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYP 681 (888)
Q Consensus 602 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~ 681 (888)
++|.+ ..+|.. +. ++|++|++++|..... ....+..+++|+.|+++.+............
T Consensus 110 ~~n~l-~~l~~~-~~--~~L~~L~l~~n~i~~~----------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 110 SKNHL-VEIPPN-LP--SSLVELRIHDNRIRKV----------------PKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp CSSCC-CSCCSS-CC--TTCCEEECCSSCCCCC----------------CSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred CCCcC-CccCcc-cc--ccCCEEECCCCccCcc----------------CHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 99976 678876 33 8999999999877532 1234678899999999887654322111111
Q ss_pred ccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc--h
Q 046470 682 KLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT--W 759 (888)
Q Consensus 682 ~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~ 759 (888)
... .++.|.+.++....... .-.++|++|++++|.+..+.+..+. .+++|+.|+|++|. ++.++ .
T Consensus 170 ~~l-~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l~--------~l~~L~~L~L~~N~-l~~~~~~~ 236 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDLL--------RYSKLYRLGLGHNQ-IRMIENGS 236 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSCCS---SSCSSCSCCBCCSSCCCCCCTTSST--------TCTTCSCCBCCSSC-CCCCCTTG
T ss_pred cCC-ccCEEECcCCCCCccCc---cccCCCCEEECCCCcCCccCHHHhc--------CCCCCCEEECCCCc-CCcCChhH
Confidence 111 56667776665433221 1226788888888887766544443 47788888888884 44443 5
Q ss_pred hhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCCC-------CCCCccEEEe
Q 046470 760 LVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPL-------PFPKLKKIQI 832 (888)
Q Consensus 760 l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~-------~~p~L~~L~i 832 (888)
+..+++|+.|++++|. ++.++. .+..+++|+.|+++++ .++.++.... .+++|+.|++
T Consensus 237 ~~~l~~L~~L~L~~N~-l~~lp~-------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNK-LSRVPA-------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp GGGCTTCCEEECCSSC-CCBCCT-------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred hhCCCCCCEEECCCCc-CeecCh-------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEe
Confidence 7788888888888854 555544 4567888888888887 4666654322 1567888888
Q ss_pred cCCCC
Q 046470 833 YSCPE 837 (888)
Q Consensus 833 ~~C~~ 837 (888)
.++|-
T Consensus 302 ~~N~~ 306 (332)
T 2ft3_A 302 FNNPV 306 (332)
T ss_dssp CSSSS
T ss_pred ecCcc
Confidence 88763
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=3.5e-19 Score=206.65 Aligned_cols=113 Identities=24% Similarity=0.222 Sum_probs=52.1
Q ss_pred ccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCC
Q 046470 502 EGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWT 581 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 581 (888)
++++.|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|+|++|.++.+|. .+.+|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 344555555555444443 34445555555555444443 34445555555555544443 3444555555555
Q ss_pred cccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCC
Q 046470 582 EITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 582 ~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 631 (888)
+++.+|.. +++|++|++++|.+ ..+|. .+++|+.|++++|.+
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQL 173 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCC
T ss_pred CCCcCCCC---CCCCCEEECcCCcC-CCcCC----ccCCCCEEECCCCCC
Confidence 55444432 24455555555433 33332 123444455544443
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=202.91 Aligned_cols=233 Identities=22% Similarity=0.263 Sum_probs=193.2
Q ss_pred ccccCCcccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hh
Q 046470 491 RLTEAPAVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GI 567 (888)
Q Consensus 491 ~~~~~~~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i 567 (888)
....+|. .-..+++.|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|.++.+|. .+
T Consensus 54 ~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 54 NLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp CCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred CcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 3444443 12368999999999998875 47889999999999999999998889999999999999999999875 58
Q ss_pred hcccCCCEEeccCCcccccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCccccc
Q 046470 568 SSLVSLHHLDLSWTEITGLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCD 646 (888)
Q Consensus 568 ~~L~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 646 (888)
..+++|++|+|++|.++.+|. .+.++++|++|++++|+.+..+|...+.++++|++|++++|.....
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------ 200 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------------ 200 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------------
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------------
Confidence 999999999999999999865 6899999999999998888888887799999999999999977632
Q ss_pred chhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeee
Q 046470 647 DAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRI 726 (888)
Q Consensus 647 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~ 726 (888)
..+..+++|+.|+++.|....+.. ........|+.|.+.++.........+..+++|+.|++++|.+..+..
T Consensus 201 ------~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 201 ------PNLTPLIKLDELDLSGNHLSAIRP--GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp ------CCCTTCSSCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred ------cccCCCcccCEEECCCCccCccCh--hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 236788999999998876554321 111224579999999988776666678899999999999999987765
Q ss_pred cCCccccccccccCCCccEEEEecCC
Q 046470 727 DGPEEVKKLFQSGFRSLSIVSVENCE 752 (888)
Q Consensus 727 ~~~~~~~~~~~~~l~~L~~L~L~~c~ 752 (888)
..+. .+++|+.|+|++|+
T Consensus 273 ~~~~--------~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 273 DLFT--------PLHHLERIHLHHNP 290 (440)
T ss_dssp TTTS--------SCTTCCEEECCSSC
T ss_pred hHhc--------cccCCCEEEcCCCC
Confidence 5544 58999999999986
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.4e-19 Score=204.81 Aligned_cols=223 Identities=23% Similarity=0.243 Sum_probs=188.4
Q ss_pred ccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEec
Q 046470 502 EGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDL 578 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L 578 (888)
++++.|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|.++.+|.. ++.+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 58999999999998874 478899999999999999999988899999999999999999998655 889999999999
Q ss_pred cCCcccccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhc
Q 046470 579 SWTEITGLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLG 657 (888)
Q Consensus 579 ~~~~i~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 657 (888)
++|.++.+|. .+.++++|++|++++|+.+..+|...+.++++|++|++++|..... ..+..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------~~~~~ 216 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------------------PNLTP 216 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------------------CCCTT
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------------------ccccc
Confidence 9999999865 6899999999999998888888887799999999999999977632 23677
Q ss_pred CCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCcccccccc
Q 046470 658 LKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQ 737 (888)
Q Consensus 658 L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~ 737 (888)
+++|+.|+++.|....... ........|+.|.+.++.........+..+++|+.|++++|.+..+....+.
T Consensus 217 l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------- 287 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRP--GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT------- 287 (452)
T ss_dssp CTTCCEEECTTSCCSEECG--GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST-------
T ss_pred cccccEEECcCCcCcccCc--ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc-------
Confidence 8899999998876554321 1111235789999999887666666688999999999999999877555543
Q ss_pred ccCCCccEEEEecCC
Q 046470 738 SGFRSLSIVSVENCE 752 (888)
Q Consensus 738 ~~l~~L~~L~L~~c~ 752 (888)
.+++|+.|+|++|+
T Consensus 288 -~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 288 -PLRYLVELHLHHNP 301 (452)
T ss_dssp -TCTTCCEEECCSSC
T ss_pred -cccCCCEEEccCCC
Confidence 58999999999986
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.3e-18 Score=186.05 Aligned_cols=131 Identities=25% Similarity=0.362 Sum_probs=113.9
Q ss_pred cccceEEEEecCCCccCCC--CCCCCchhhhhhccCCccccc--chHHhcCCcccEEEcCCCCCcccChhhhcccCCCEE
Q 046470 501 WEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEIT--DGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHL 576 (888)
Q Consensus 501 ~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 576 (888)
.+++++|++++|.+..++. +..+++|++|++++|.++.+. +..+..+++|++|++++|.++.+|..+..+++|++|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 3689999999999998875 688999999999999987653 344678999999999999999999999999999999
Q ss_pred eccCCcccccCc--ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 577 DLSWTEITGLPQ--ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 577 ~L~~~~i~~Lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
++++|.++.+|. .+..+++|++|++++|.+....|. .+.++++|++|++++|...
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEG
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccc
Confidence 999999999864 799999999999999987554454 4889999999999987543
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=1.6e-18 Score=195.14 Aligned_cols=181 Identities=20% Similarity=0.223 Sum_probs=103.3
Q ss_pred ccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCC
Q 046470 502 EGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWT 581 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 581 (888)
.+++.|++++|.+..++... ++|++|++++|.++.+| . |..+++|++|++++|.++.+|..+ .+|++|++++|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC
Confidence 46666666666666554432 56777777777766665 2 667777777777777776666443 36777777777
Q ss_pred cccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCC
Q 046470 582 EITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHL 661 (888)
Q Consensus 582 ~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 661 (888)
.++.+| .++++++|++|++++|.+ ..+|.. .++|++|++++|..... ..+..+++|
T Consensus 184 ~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~----~~~L~~L~l~~n~l~~l------------------p~~~~l~~L 239 (454)
T 1jl5_A 184 QLEELP-ELQNLPFLTAIYADNNSL-KKLPDL----PLSLESIVAGNNILEEL------------------PELQNLPFL 239 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSSCC-SSCCCC----CTTCCEEECCSSCCSSC------------------CCCTTCTTC
T ss_pred cCCcCc-cccCCCCCCEEECCCCcC-CcCCCC----cCcccEEECcCCcCCcc------------------cccCCCCCC
Confidence 776666 466777777777777654 345542 24666666666654311 124456666
Q ss_pred ceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcce
Q 046470 662 NFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEE 723 (888)
Q Consensus 662 ~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~ 723 (888)
+.|+++.+....++ .....++.|.+.++....... .+++|+.|++++|.+..
T Consensus 240 ~~L~l~~N~l~~l~------~~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 240 TTIYADNNLLKTLP------DLPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSG 291 (454)
T ss_dssp CEEECCSSCCSSCC------SCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSE
T ss_pred CEEECCCCcCCccc------ccccccCEEECCCCcccccCc----ccCcCCEEECcCCccCc
Confidence 66666555433221 122455666665554332211 12455555555555543
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.9e-19 Score=192.80 Aligned_cols=233 Identities=18% Similarity=0.192 Sum_probs=172.8
Q ss_pred CCcccccccceEEEEec-CCCcc-CC-CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCc-ccChhhhcc
Q 046470 495 APAVEEWEGAKRISLRG-NRFDS-LS-EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALS-KLPSGISSL 570 (888)
Q Consensus 495 ~~~~~~~~~lr~L~l~~-n~~~~-l~-~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L 570 (888)
.+.+..+++++.|++++ |.+.. +| .+..+++|++|++++|.+....+..|.++++|++|++++|.++ .+|..++.+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 35677889999999995 77763 44 4788999999999999998666666999999999999999999 689999999
Q ss_pred cCCCEEeccCCccc-ccCcccccCC-ccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccch
Q 046470 571 VSLHHLDLSWTEIT-GLPQELKALE-KLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDA 648 (888)
Q Consensus 571 ~~L~~L~L~~~~i~-~Lp~~i~~L~-~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 648 (888)
++|++|++++|.++ .+|..+..+. +|++|++++|.+...+|.. +..++ |++|++++|.....
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l~~~-------------- 212 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLEGD-------------- 212 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEEEEC--------------
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCcccCc--------------
Confidence 99999999999998 6899999998 9999999999886677776 77777 99999987754311
Q ss_pred hhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecC
Q 046470 649 GLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDG 728 (888)
Q Consensus 649 ~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~ 728 (888)
.... +..+++|+.|++++|.+....+.
T Consensus 213 --~~~~--------------------------------------------------~~~l~~L~~L~L~~N~l~~~~~~- 239 (313)
T 1ogq_A 213 --ASVL--------------------------------------------------FGSDKNTQKIHLAKNSLAFDLGK- 239 (313)
T ss_dssp --CGGG--------------------------------------------------CCTTSCCSEEECCSSEECCBGGG-
T ss_pred --CCHH--------------------------------------------------HhcCCCCCEEECCCCceeeecCc-
Confidence 1111 33445666666666555432221
Q ss_pred CccccccccccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceee
Q 046470 729 PEEVKKLFQSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALN 807 (888)
Q Consensus 729 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~ 807 (888)
+ ..+++|++|+|++|.....+| .+..+++|++|+|++|.....++. ...+++|+.|+
T Consensus 240 ~--------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--------------~~~l~~L~~l~ 297 (313)
T 1ogq_A 240 V--------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--------------GGNLQRFDVSA 297 (313)
T ss_dssp C--------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--------------STTGGGSCGGG
T ss_pred c--------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC--------------CccccccChHH
Confidence 1 236777777777774332333 577778888888887653323322 25678888888
Q ss_pred ccccccccccC
Q 046470 808 IFNNVNLKSIY 818 (888)
Q Consensus 808 L~~~~~L~~i~ 818 (888)
+.+++.+...+
T Consensus 298 l~~N~~lc~~p 308 (313)
T 1ogq_A 298 YANNKCLCGSP 308 (313)
T ss_dssp TCSSSEEESTT
T ss_pred hcCCCCccCCC
Confidence 88877666544
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=2.1e-18 Score=194.21 Aligned_cols=117 Identities=19% Similarity=0.283 Sum_probs=57.7
Q ss_pred ccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCC
Q 046470 502 EGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWT 581 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 581 (888)
++++.|++++|.+..+|.. .++|++|++++|.++.++.. .++|++|++++|.++.+| .++.+++|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC
Confidence 3455555555555544432 24555555555554443321 145555555555555555 3555555555555555
Q ss_pred cccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCC
Q 046470 582 EITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 582 ~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 631 (888)
.++.+|..+ .+|++|++++|.+ ..+|. ++++++|++|++.+|..
T Consensus 164 ~l~~lp~~~---~~L~~L~L~~n~l-~~l~~--~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 164 SLKKLPDLP---PSLEFIAAGNNQL-EELPE--LQNLPFLTAIYADNNSL 207 (454)
T ss_dssp CCSCCCCCC---TTCCEEECCSSCC-SSCCC--CTTCTTCCEEECCSSCC
T ss_pred cCcccCCCc---ccccEEECcCCcC-CcCcc--ccCCCCCCEEECCCCcC
Confidence 555554432 3555555555543 33442 45555555555555443
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.4e-18 Score=186.72 Aligned_cols=248 Identities=15% Similarity=0.110 Sum_probs=146.8
Q ss_pred CCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecc
Q 046470 522 TSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNL 601 (888)
Q Consensus 522 ~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l 601 (888)
.+++|++|++++|.++.+++..|..+++|++|+|++|.++.+++ ++.+++|++|++++|.++.+|. +++|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 34456666666666555555555566666666666665554443 5556666666666665555442 255666666
Q ss_pred ccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCC
Q 046470 602 EHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYP 681 (888)
Q Consensus 602 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~ 681 (888)
++|.+ ..++. ..+++|++|++++|.... .... ..
T Consensus 107 ~~n~l-~~~~~---~~~~~L~~L~l~~N~l~~----------------------------------------~~~~--~~ 140 (317)
T 3o53_A 107 ANNNI-SRVSC---SRGQGKKNIYLANNKITM----------------------------------------LRDL--DE 140 (317)
T ss_dssp CSSCC-SEEEE---CCCSSCEEEECCSSCCCS----------------------------------------GGGB--CT
T ss_pred CCCcc-CCcCc---cccCCCCEEECCCCCCCC----------------------------------------ccch--hh
Confidence 66544 33332 234556666665554431 1110 00
Q ss_pred ccccceEEEEEeecCCCccccccc-cccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCC-ch
Q 046470 682 KLVSITQSVVVYQCECPLFNVLHL-AYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL-TW 759 (888)
Q Consensus 682 ~l~~~L~~L~l~~~~~~~~~~l~l-~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~ 759 (888)
...+.|+.|+++++.........+ ..+++|++|++++|.+..+.... .+++|+.|+|++|. ++.+ +.
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~l~~L~~L~Ls~N~-l~~l~~~ 209 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----------VFAKLKTLDLSSNK-LAFMGPE 209 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC----------CCTTCCEEECCSSC-CCEECGG
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc----------ccccCCEEECCCCc-CCcchhh
Confidence 112356677777666544443333 46788888888888887652221 37788888888884 4444 45
Q ss_pred hhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccc-cccCCCCCCCCCccEEEecCCCCC
Q 046470 760 LVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNL-KSIYPNPLPFPKLKKIQIYSCPEL 838 (888)
Q Consensus 760 l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L-~~i~~~~~~~p~L~~L~i~~C~~L 838 (888)
+..+++|+.|++++| .++.++. .+..+++|+.|++++++-. ..++.....+++|+.|++.+|+.+
T Consensus 210 ~~~l~~L~~L~L~~N-~l~~l~~-------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 210 FQSAAGVTWISLRNN-KLVLIEK-------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp GGGGTTCSEEECTTS-CCCEECT-------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcccCcccEEECcCC-cccchhh-------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 778888888888885 4665543 4567788888888887533 233333445778888888877766
Q ss_pred CCCCCCC
Q 046470 839 KKLPLNS 845 (888)
Q Consensus 839 ~~lP~~~ 845 (888)
+..+...
T Consensus 276 ~~~~~~~ 282 (317)
T 3o53_A 276 TGQNEEE 282 (317)
T ss_dssp HSSSSCC
T ss_pred cCCchhc
Confidence 6654433
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=3e-18 Score=203.39 Aligned_cols=335 Identities=17% Similarity=0.172 Sum_probs=217.7
Q ss_pred cccccccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCC
Q 046470 497 AVEEWEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSL 573 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L 573 (888)
.+..+++++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.++.+|. .++++++|
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 57788999999999999998864 7889999999999999999999989999999999999999999865 58999999
Q ss_pred CEEeccCCcccc--cCcccccCCccceeccccccccCCccccccCCCCC---------------------------CcEE
Q 046470 574 HHLDLSWTEITG--LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSK---------------------------LEVL 624 (888)
Q Consensus 574 ~~L~L~~~~i~~--Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~---------------------------L~~L 624 (888)
++|++++|.++. +|..++.+++|++|++++|++.. ++...+..+.+ ++.|
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l 229 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence 999999999886 57889999999999999986532 22211222111 1122
Q ss_pred eccCCCCCCc------------------------------c----c----------------------------------
Q 046470 625 RLLGCGSNCV------------------------------T----V---------------------------------- 636 (888)
Q Consensus 625 ~l~~~~~~~~------------------------------~----~---------------------------------- 636 (888)
++.++..... . .
T Consensus 230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 309 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS 309 (635)
T ss_dssp EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence 2211100000 0 0
Q ss_pred ------------ccccC--cc---------ccc----------------chhhHHHHhhcCCCCceEEEEEechhhHH--
Q 046470 637 ------------TEEEG--NV---------LCD----------------DAGLLMKELLGLKHLNFLSWSFRSSLAVQ-- 675 (888)
Q Consensus 637 ------------~~~~~--~~---------~~~----------------~~~~~~~~L~~L~~L~~L~l~~~~~~~~~-- 675 (888)
..... .. ... ...........+++|+.++++.+......
T Consensus 310 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 310 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred cccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc
Confidence 00000 00 000 00000111235778888877655432111
Q ss_pred --hhhcCC-------------------ccccceEEEEEeecCCCcc-ccccccccCCcceEEeecCCcceeeecCCcccc
Q 046470 676 --KFFKYP-------------------KLVSITQSVVVYQCECPLF-NVLHLAYMENLQELHLEDSDLEEMRIDGPEEVK 733 (888)
Q Consensus 676 --~~~~~~-------------------~l~~~L~~L~l~~~~~~~~-~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~ 733 (888)
...... .....++.+.+..+..... ....+..+++++.++++.|.+....+..+.
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~--- 466 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN--- 466 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT---
T ss_pred ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc---
Confidence 011110 0112233333332221111 112356678888999988888765444433
Q ss_pred ccccccCCCccEEEEecCCCCCCC--chhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeecccc
Q 046470 734 KLFQSGFRSLSIVSVENCEKMKDL--TWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNN 811 (888)
Q Consensus 734 ~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 811 (888)
.+++|+.|+|++|.....+ ..+..+++|++|+|++|. ++.+++ ..+..+++|++|+|+++
T Consensus 467 -----~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~------------~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 467 -----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP------------TAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp -----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECTTS
T ss_pred -----cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh------------HHHcCCCCCCEEECCCC
Confidence 5789999999998655543 257889999999999964 666654 46778999999999998
Q ss_pred ccccccCCC-CCCCCCccEEEecCCCCCCCCCCCCCc-ccCcceEE
Q 046470 812 VNLKSIYPN-PLPFPKLKKIQIYSCPELKKLPLNSSS-AKERRVVI 855 (888)
Q Consensus 812 ~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lP~~~~~-~~~~l~~i 855 (888)
+++.++.. ...+++|+.|+++++ +++.+|..... ...++..+
T Consensus 529 -~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 529 -NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp -CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEE
T ss_pred -cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEE
Confidence 67777654 445899999999986 57766554332 22345544
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=5.6e-20 Score=197.57 Aligned_cols=266 Identities=19% Similarity=0.209 Sum_probs=198.3
Q ss_pred ccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEe
Q 046470 500 EWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLD 577 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~ 577 (888)
.+++++.|++++|.+..++ .+..+++|++|++++|.++..++ |..+++|++|++++|.++.+| .+++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEE
Confidence 3468999999999998876 47889999999999999987776 889999999999999998776 348999999
Q ss_pred ccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHh-h
Q 046470 578 LSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKEL-L 656 (888)
Q Consensus 578 L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~ 656 (888)
+++|.++.+|.. .+++|++|++++|.+ ..++...++.+++|++|++++|..... .+..+ .
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------~~~~~~~ 166 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTV----------------NFAELAA 166 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCEE----------------EGGGGGG
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCcc----------------cHHHHhh
Confidence 999999998653 478999999999977 555554488999999999999877532 12222 3
Q ss_pred cCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccc
Q 046470 657 GLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLF 736 (888)
Q Consensus 657 ~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~ 736 (888)
.+++|+.|+++.+.... .. ....+++|++|++++|.+..+++. +.
T Consensus 167 ~l~~L~~L~L~~N~l~~--------------------------~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~------ 211 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYD--------------------------VK--GQVVFAKLKTLDLSSNKLAFMGPE-FQ------ 211 (317)
T ss_dssp GTTTCCEEECTTSCCCE--------------------------EE--CCCCCTTCCEEECCSSCCCEECGG-GG------
T ss_pred ccCcCCEEECCCCcCcc--------------------------cc--cccccccCCEEECCCCcCCcchhh-hc------
Confidence 56777777776543221 11 122468899999999988876444 22
Q ss_pred cccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeecccccccc
Q 046470 737 QSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLK 815 (888)
Q Consensus 737 ~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~ 815 (888)
.+++|+.|+|++| .++.++ .+..+++|+.|++++|+....... .....+++|+.|.+.++..++
T Consensus 212 --~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~------------~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 212 --SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR------------DFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp --GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHH------------HHHHTCHHHHHHHHHHHHHHH
T ss_pred --ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHH------------HHHhccccceEEECCCchhcc
Confidence 5789999999998 455554 577889999999999764312222 256678899999998887777
Q ss_pred ccCCCCCCCCCccEEEecCCCCCCC
Q 046470 816 SIYPNPLPFPKLKKIQIYSCPELKK 840 (888)
Q Consensus 816 ~i~~~~~~~p~L~~L~i~~C~~L~~ 840 (888)
.........+.+....-..|..+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 277 GQNEEECTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp SSSSCCCSSTTCEEETTEEEBCCTT
T ss_pred CCchhccCCCceecccceeeccCCh
Confidence 6655444455555555556665553
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=8.7e-18 Score=194.94 Aligned_cols=255 Identities=18% Similarity=0.176 Sum_probs=196.8
Q ss_pred cceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCc
Q 046470 503 GAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTE 582 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 582 (888)
.++.|++++|.+..+|.... ++|++|++++|.++.+|. .+++|++|+|++|.|+.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 57899999999998886322 899999999999998887 57999999999999999987 78999999999999
Q ss_pred ccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCc
Q 046470 583 ITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLN 662 (888)
Q Consensus 583 i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 662 (888)
++.+|. .+++|++|++++|++ ..+|.. +++|++|++++|..... . ..+.+|+
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~l-~~lp~~----l~~L~~L~Ls~N~l~~l-------------~-------~~~~~L~ 164 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQL-TSLPVL----PPGLQELSVSDNQLASL-------------P-------ALPSELC 164 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSCC-SCCCCC----CTTCCEEECCSSCCSCC-------------C-------CCCTTCC
T ss_pred CCCCCC---CCCCcCEEECCCCCC-CcCCCC----CCCCCEEECcCCcCCCc-------------C-------CccCCCC
Confidence 999987 678999999999975 667763 48999999999876531 0 1245677
Q ss_pred eEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCC
Q 046470 663 FLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRS 742 (888)
Q Consensus 663 ~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~ 742 (888)
.|+++.+....++ ...+.|+.|+++++....+.. .+++|+.|++++|.+..++. .+++
T Consensus 165 ~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~------------~~~~ 222 (622)
T 3g06_A 165 KLWAYNNQLTSLP------MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA------------LPSG 222 (622)
T ss_dssp EEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC------------CCTT
T ss_pred EEECCCCCCCCCc------ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC------------CCCC
Confidence 8887776654432 334678888888876544322 24788888888887774421 2578
Q ss_pred ccEEEEecCCCCCCCchhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCCC
Q 046470 743 LSIVSVENCEKMKDLTWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPL 822 (888)
Q Consensus 743 L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~ 822 (888)
|+.|+|++| .++.+| ..+++|+.|+|++| .++.++. .+++|+.|+|++| +++.++....
T Consensus 223 L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~----------------~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 223 LKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPM----------------LPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp CCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC----------------CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred CCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCc----------------ccccCcEEeCCCC-CCCcCCHHHh
Confidence 888888888 566666 56688888888885 4554422 5678888888887 6778877777
Q ss_pred CCCCccEEEecCCC
Q 046470 823 PFPKLKKIQIYSCP 836 (888)
Q Consensus 823 ~~p~L~~L~i~~C~ 836 (888)
.+++|+.|++.+|+
T Consensus 282 ~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 282 HLSSETTVNLEGNP 295 (622)
T ss_dssp GSCTTCEEECCSCC
T ss_pred hccccCEEEecCCC
Confidence 78888888888875
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=2.4e-18 Score=195.69 Aligned_cols=237 Identities=15% Similarity=0.124 Sum_probs=165.7
Q ss_pred CCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceec
Q 046470 521 PTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLN 600 (888)
Q Consensus 521 ~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 600 (888)
..+++|++|++++|.++.+++..|..+++|++|+|++|.++..++ ++.+++|++|+|++|.++.+|.. ++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 345678888888888888877778888888888888888886654 88888888888888888877643 7888888
Q ss_pred cccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcC
Q 046470 601 LEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKY 680 (888)
Q Consensus 601 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~ 680 (888)
+++|.+ ..+|. ..+++|++|++++|..... ....+.++++|+.|+++
T Consensus 106 L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~~~----------------~~~~~~~l~~L~~L~Ls------------- 152 (487)
T 3oja_A 106 AANNNI-SRVSC---SRGQGKKNIYLANNKITML----------------RDLDEGCRSRVQYLDLK------------- 152 (487)
T ss_dssp CCSSCC-CCEEE---CCCSSCEEEECCSSCCCSG----------------GGBCGGGGSSEEEEECT-------------
T ss_pred CcCCcC-CCCCc---cccCCCCEEECCCCCCCCC----------------CchhhcCCCCCCEEECC-------------
Confidence 888865 44443 3467888888888776521 11123344555555544
Q ss_pred CccccceEEEEEeecCCCcccccccc-ccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCC-c
Q 046470 681 PKLVSITQSVVVYQCECPLFNVLHLA-YMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL-T 758 (888)
Q Consensus 681 ~~l~~~L~~L~l~~~~~~~~~~l~l~-~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~ 758 (888)
++......+..+. .+++|+.|++++|.+..+... ..+++|+.|+|++|. ++.+ +
T Consensus 153 -------------~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~----------~~l~~L~~L~Ls~N~-l~~~~~ 208 (487)
T 3oja_A 153 -------------LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----------VVFAKLKTLDLSSNK-LAFMGP 208 (487)
T ss_dssp -------------TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----------CCCTTCCEEECCSSC-CCEECG
T ss_pred -------------CCCCCCcChHHHhhhCCcccEEecCCCcccccccc----------ccCCCCCEEECCCCC-CCCCCH
Confidence 3332222222333 678999999999998866322 147899999999984 5554 4
Q ss_pred hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccc-cccCCCCCCCCCccEEEec
Q 046470 759 WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNL-KSIYPNPLPFPKLKKIQIY 833 (888)
Q Consensus 759 ~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L-~~i~~~~~~~p~L~~L~i~ 833 (888)
.+..+++|+.|+|++|. +..++. .+..+++|+.|++++|+-. ..++.....++.|+.|.+.
T Consensus 209 ~~~~l~~L~~L~Ls~N~-l~~lp~-------------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNK-LVLIEK-------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGGTTCSEEECTTSC-CCEECT-------------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hHcCCCCccEEEecCCc-Ccccch-------------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 68889999999999954 665544 4667889999999988643 2333334457778877775
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.4e-18 Score=183.88 Aligned_cols=219 Identities=17% Similarity=0.208 Sum_probs=163.8
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCc-
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTE- 582 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~- 582 (888)
+.++.+++.+..+|. ...++|++|++++|.++.+++..|..+++|++|++++|.++.+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 566777777777764 2356888999999998888877788899999999999988877 7788889999999999986
Q ss_pred cccc-CcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCC
Q 046470 583 ITGL-PQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHL 661 (888)
Q Consensus 583 i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 661 (888)
++.+ |..+..+++|++|++++|.+ ..++...+.++++|++|++++|..... ....+..+++|
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~l~~L 155 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQAL----------------PDDTFRDLGNL 155 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCC----------------CTTTTTTCTTC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCccccc----------------CHhHhccCCCc
Confidence 8887 67788899999999999876 445444488899999999988876532 11234556677
Q ss_pred ceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCC
Q 046470 662 NFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFR 741 (888)
Q Consensus 662 ~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~ 741 (888)
+.|+++.+... ......+..+++|++|++++|.+..+.+..+. .++
T Consensus 156 ~~L~l~~n~l~--------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------~l~ 201 (285)
T 1ozn_A 156 THLFLHGNRIS--------------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR--------DLG 201 (285)
T ss_dssp CEEECCSSCCC--------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTT--------TCT
T ss_pred cEEECCCCccc--------------------------ccCHHHhcCccccCEEECCCCcccccCHhHcc--------Ccc
Confidence 77766544321 12222366778899999999888876565554 578
Q ss_pred CccEEEEecCCCCCCCc--hhhhccCcceEeeecccc
Q 046470 742 SLSIVSVENCEKMKDLT--WLVFVQNLKELEISRCHA 776 (888)
Q Consensus 742 ~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~ 776 (888)
+|+.|+|++| .++.++ .+..+++|+.|+|++|+-
T Consensus 202 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 202 RLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 8999999988 455554 477889999999998653
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.3e-17 Score=176.42 Aligned_cols=219 Identities=16% Similarity=0.188 Sum_probs=150.6
Q ss_pred hhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEEeccCCccccc-CcccccCCccceeccccc
Q 046470 527 ITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDLSWTEITGL-PQELKALEKLRYLNLEHA 604 (888)
Q Consensus 527 r~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~~ 604 (888)
++++.+++.++.+|... .++|++|++++|.++.+| ..++.+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 46777778888887652 578999999999999886 5689999999999999999987 778999999999999999
Q ss_pred cccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccc
Q 046470 605 YMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLV 684 (888)
Q Consensus 605 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 684 (888)
..+..++...+.++++|++|++.+|..... ....+..+++|+.|+++.+...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~l~~L~~L~l~~n~l~------------ 142 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL----------------GPGLFRGLAALQYLYLQDNALQ------------ 142 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCC----------------CTTTTTTCTTCCEEECCSSCCC------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEE----------------CHhHhhCCcCCCEEECCCCccc------------
Confidence 745667544589999999999998876521 1223445566666665543221
Q ss_pred cceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCC--chhhh
Q 046470 685 SITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL--TWLVF 762 (888)
Q Consensus 685 ~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~ 762 (888)
......+..+++|++|++++|.+..+....+. .+++|+.|++++|. +..+ ..+..
T Consensus 143 --------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~l~~n~-l~~~~~~~~~~ 199 (285)
T 1ozn_A 143 --------------ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR--------GLHSLDRLLLHQNR-VAHVHPHAFRD 199 (285)
T ss_dssp --------------CCCTTTTTTCTTCCEEECCSSCCCEECTTTTT--------TCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred --------------ccCHhHhccCCCccEEECCCCcccccCHHHhc--------CccccCEEECCCCc-ccccCHhHccC
Confidence 11222255667777777777777655444333 46777777777774 3332 24666
Q ss_pred ccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccc
Q 046470 763 VQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNV 812 (888)
Q Consensus 763 l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 812 (888)
+++|+.|++++|. ++.++. ..+..+++|+.|+|++++
T Consensus 200 l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 200 LGRLMTLYLFANN-LSALPT------------EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSSC-CSCCCH------------HHHTTCTTCCEEECCSSC
T ss_pred cccccEeeCCCCc-CCcCCH------------HHcccCcccCEEeccCCC
Confidence 7777777777743 444432 234556667777776654
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.3e-18 Score=197.95 Aligned_cols=238 Identities=18% Similarity=0.170 Sum_probs=180.1
Q ss_pred ccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEe
Q 046470 500 EWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLD 577 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~ 577 (888)
.+++++.|++++|.+..++ .+..+++|++|++++|.++..++ |..+++|++|+|++|.++.+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 3458999999999998876 47899999999999999987776 8999999999999999998764 38999999
Q ss_pred ccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhh-
Q 046470 578 LSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELL- 656 (888)
Q Consensus 578 L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~- 656 (888)
+++|.++.+|.. .+++|++|++++|.+....|.. ++++++|++|++++|.+... .+..+.
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~----------------~~~~l~~ 166 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV----------------NFAELAA 166 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEE----------------EGGGGGG
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCc----------------ChHHHhh
Confidence 999999998653 5789999999999875444544 88999999999999877532 223333
Q ss_pred cCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccc
Q 046470 657 GLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLF 736 (888)
Q Consensus 657 ~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~ 736 (888)
.+++|+.|+++.|.... . .....+++|+.|++++|.+..+++. +
T Consensus 167 ~l~~L~~L~Ls~N~l~~--------------------------~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~------- 210 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYD--------------------------V--KGQVVFAKLKTLDLSSNKLAFMGPE-F------- 210 (487)
T ss_dssp GTTTCCEEECTTSCCCE--------------------------E--ECCCCCTTCCEEECCSSCCCEECGG-G-------
T ss_pred hCCcccEEecCCCcccc--------------------------c--cccccCCCCCEEECCCCCCCCCCHh-H-------
Confidence 57778877776544221 1 1123478899999999988876544 2
Q ss_pred cccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccc
Q 046470 737 QSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNV 812 (888)
Q Consensus 737 ~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 812 (888)
..+++|+.|+|++|. +..+| .+..+++|+.|++++|+.....++ .....+++|+.|.+..+.
T Consensus 211 -~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~------------~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 211 -QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLR------------DFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp -GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHH------------HHHTTCHHHHHHHHHHHH
T ss_pred -cCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchH------------HHHHhCCCCcEEeccccc
Confidence 257899999999984 55554 577889999999998764312211 145567778877776443
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=2.9e-17 Score=175.31 Aligned_cols=125 Identities=25% Similarity=0.412 Sum_probs=69.1
Q ss_pred cccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEec
Q 046470 499 EEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDL 578 (888)
Q Consensus 499 ~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 578 (888)
..+++++.|++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+| .++.+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 3455667777766666665555555555555555555555544 555555555555555555544 4555555555555
Q ss_pred cCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCC
Q 046470 579 SWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCG 630 (888)
Q Consensus 579 ~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 630 (888)
++|.++.+|. +..+++|++|++++|.+ ..+|. ++.+++|++|++++|.
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP--LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSC
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc--ccCCCCccEEEccCCc
Confidence 5555555543 55555555555555543 33333 4455555555555443
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.3e-18 Score=186.40 Aligned_cols=244 Identities=17% Similarity=0.109 Sum_probs=169.2
Q ss_pred cccceEEEEecCCCccCCC-CCCCCchhhhhhccCCccc--ccchHHh-------cCCcccEEEcCCCCCc-ccChhh--
Q 046470 501 WEGAKRISLRGNRFDSLSE-IPTSPRLITLLLIANSIDE--ITDGFFQ-------SMSSLRVLSLGSNALS-KLPSGI-- 567 (888)
Q Consensus 501 ~~~lr~L~l~~n~~~~l~~-~~~~~~Lr~L~l~~n~l~~--~~~~~~~-------~l~~L~~L~Ls~~~i~-~lp~~i-- 567 (888)
..+++.+++.+|.+ .+|. +. ..|++|++++|.+.. ++.. +. ++++|++|+|++|.++ .+|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~--~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFT--DIIKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHH--HHHHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc-ccHHHHH--HHHhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34566667777777 4443 22 238889999888754 3332 33 6899999999999988 578776
Q ss_pred hcccCCCEEeccCCcccccCcccccC-----CccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCc
Q 046470 568 SSLVSLHHLDLSWTEITGLPQELKAL-----EKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGN 642 (888)
Q Consensus 568 ~~L~~L~~L~L~~~~i~~Lp~~i~~L-----~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 642 (888)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|++ ..+|...++++++|++|++++|....
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~--------- 187 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELG--------- 187 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCH---------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCc---------
Confidence 88999999999999998888888777 8999999999976 45554448899999999999887541
Q ss_pred ccccchhhHHHHh--hcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCC
Q 046470 643 VLCDDAGLLMKEL--LGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSD 720 (888)
Q Consensus 643 ~~~~~~~~~~~~L--~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~ 720 (888)
....+..+ ..+++|+.|+++.+....+..+. ...+..+++|++|++++|.
T Consensus 188 -----~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----------------------~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 188 -----ERGLISALCPLKFPTLQVLALRNAGMETPSGVC-----------------------SALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp -----HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH-----------------------HHHHHTTCCCSEEECTTSC
T ss_pred -----chHHHHHHHhccCCCCCEEECCCCcCcchHHHH-----------------------HHHHhcCCCCCEEECCCCc
Confidence 11123344 67777877777655443221110 0113456888888888888
Q ss_pred cceeee-cCCccccccccccCCCccEEEEecCCCCCCCc-hhhhccCcceEeeecccccchhcccccccccccccCccCc
Q 046470 721 LEEMRI-DGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT-WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHN 798 (888)
Q Consensus 721 l~~l~~-~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~ 798 (888)
+....+ ..+ ..+++|+.|+|++|. ++.+| .+. ++|++|+|++| .++.++ ...
T Consensus 240 l~~~~~~~~~--------~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p--------------~~~ 293 (312)
T 1wwl_A 240 LRDAAGAPSC--------DWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNP--------------SPD 293 (312)
T ss_dssp CCSSCCCSCC--------CCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCC--------------CTT
T ss_pred CCcccchhhh--------hhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCCh--------------hHh
Confidence 775432 111 246889999998884 55655 333 78999999885 466552 255
Q ss_pred cccccceeeccccc
Q 046470 799 FFAQLEALNIFNNV 812 (888)
Q Consensus 799 ~~p~L~~L~L~~~~ 812 (888)
.+++|+.|+|++++
T Consensus 294 ~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 294 ELPQVGNLSLKGNP 307 (312)
T ss_dssp TSCEEEEEECTTCT
T ss_pred hCCCCCEEeccCCC
Confidence 78889999998874
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=7.9e-17 Score=170.13 Aligned_cols=132 Identities=21% Similarity=0.257 Sum_probs=115.2
Q ss_pred ccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEe
Q 046470 498 VEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLD 577 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~ 577 (888)
+..+.+++.+++.++.+..+|... .+++++|++++|.++.+++..|..+++|++|+|++|.++.+|.. +.+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 345678899999999999887532 37899999999999999888899999999999999999988755 8899999999
Q ss_pred ccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 578 LSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 578 L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
+++|.++.+|..+..+++|++|++++|++ ..+|.+.+.++++|++|++++|...
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCC
Confidence 99999999999999999999999999976 6677666899999999999988665
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=5.2e-17 Score=173.35 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=48.0
Q ss_pred CCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceeccc
Q 046470 523 SPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLE 602 (888)
Q Consensus 523 ~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~ 602 (888)
+++|++|++++|.+..++. +..+++|++|++++|.++.+|. ++.+++|++|++++|.++.+| .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 4444445555544444431 4444555555555555444443 444555555555555444443 34444555555555
Q ss_pred cccccCCccccccCCCCCCcEEeccCCCC
Q 046470 603 HAYMLSIIPHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 603 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 631 (888)
+|.+ ..+|. +..+++|++|++++|..
T Consensus 116 ~n~l-~~~~~--l~~l~~L~~L~l~~n~l 141 (308)
T 1h6u_A 116 STQI-TDVTP--LAGLSNLQVLYLDLNQI 141 (308)
T ss_dssp TSCC-CCCGG--GTTCTTCCEEECCSSCC
T ss_pred CCCC-CCchh--hcCCCCCCEEECCCCcc
Confidence 5433 33332 44445555555544433
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=5.1e-18 Score=181.82 Aligned_cols=247 Identities=20% Similarity=0.216 Sum_probs=174.2
Q ss_pred CCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCc--ccChhhh-------cccCCCEEeccCCcccc-cCccc-
Q 046470 522 TSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALS--KLPSGIS-------SLVSLHHLDLSWTEITG-LPQEL- 590 (888)
Q Consensus 522 ~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~--~lp~~i~-------~L~~L~~L~L~~~~i~~-Lp~~i- 590 (888)
..++|+.|++++|.+ .+|..+... |++|+|++|.++ .+|..+. ++.+|++|++++|.++. +|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 456789999999999 777664433 888999999886 4677666 78999999999999884 78876
Q ss_pred -ccCCccceeccccccccCCccccccCCC-----CCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceE
Q 046470 591 -KALEKLRYLNLEHAYMLSIIPHQLISGF-----SKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFL 664 (888)
Q Consensus 591 -~~L~~L~~L~l~~~~~l~~lp~~~i~~L-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 664 (888)
..+++|++|++++|.+ ..+|.. ++.+ ++|++|++++|..... ....+..+++|+.|
T Consensus 117 ~~~l~~L~~L~Ls~N~l-~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~----------------~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSW-ATRDAW-LAELQQWLKPGLKVLSIAQAHSLNF----------------SCEQVRVFPALSTL 178 (312)
T ss_dssp SCCSCCCSEEEEESCBC-SSSSSH-HHHHHTTCCTTCCEEEEESCSCCCC----------------CTTTCCCCSSCCEE
T ss_pred HhcCCCccEEEccCCCC-cchhHH-HHHHHHhhcCCCcEEEeeCCCCccc----------------hHHHhccCCCCCEE
Confidence 8999999999999976 444643 5655 8999999998876532 22345677888888
Q ss_pred EEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCcc
Q 046470 665 SWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLS 744 (888)
Q Consensus 665 ~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~ 744 (888)
+++.+.......+. ....+..+++|++|++++|.+..+.... . .....+++|+
T Consensus 179 ~Ls~N~l~~~~~~~----------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~----~~~~~l~~L~ 231 (312)
T 1wwl_A 179 DLSDNPELGERGLI----------------------SALCPLKFPTLQVLALRNAGMETPSGVC-S----ALAAARVQLQ 231 (312)
T ss_dssp ECCSCTTCHHHHHH----------------------HHSCTTSCTTCCEEECTTSCCCCHHHHH-H----HHHHTTCCCS
T ss_pred ECCCCCcCcchHHH----------------------HHHHhccCCCCCEEECCCCcCcchHHHH-H----HHHhcCCCCC
Confidence 88766532211100 0111356788999999998876321100 0 0002468999
Q ss_pred EEEEecCCCCCC-C--chhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCC
Q 046470 745 IVSVENCEKMKD-L--TWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNP 821 (888)
Q Consensus 745 ~L~L~~c~~l~~-l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~ 821 (888)
.|+|++|. +.. . +.+..+++|++|+|++|. ++.++. ... ++|+.|+|+++ .++.++. .
T Consensus 232 ~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~-------------~~~--~~L~~L~Ls~N-~l~~~p~-~ 292 (312)
T 1wwl_A 232 GLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK-------------GLP--AKLSVLDLSYN-RLDRNPS-P 292 (312)
T ss_dssp EEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS-------------SCC--SEEEEEECCSS-CCCSCCC-T
T ss_pred EEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cChhhh-------------hcc--CCceEEECCCC-CCCCChh-H
Confidence 99999885 444 3 345567899999999864 665543 222 88999999988 5777765 6
Q ss_pred CCCCCccEEEecCCC
Q 046470 822 LPFPKLKKIQIYSCP 836 (888)
Q Consensus 822 ~~~p~L~~L~i~~C~ 836 (888)
..+++|+.|++.+++
T Consensus 293 ~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 293 DELPQVGNLSLKGNP 307 (312)
T ss_dssp TTSCEEEEEECTTCT
T ss_pred hhCCCCCEEeccCCC
Confidence 678999999998864
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=8.1e-17 Score=165.29 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=38.8
Q ss_pred chhhhhhccCCcccccchHHhcCCcccEEEcCCCC-CcccCh-hhhcccCCCEEeccC-CcccccC-cccccCCccceec
Q 046470 525 RLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNA-LSKLPS-GISSLVSLHHLDLSW-TEITGLP-QELKALEKLRYLN 600 (888)
Q Consensus 525 ~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~-i~~lp~-~i~~L~~L~~L~L~~-~~i~~Lp-~~i~~L~~L~~L~ 600 (888)
+|++|++++|.++.+++..|..+++|++|++++|. ++.+|. .+.++++|++|++++ |.++.+| ..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444444445555555555553 444432 344455555555554 4444443 2344444455555
Q ss_pred ccccc
Q 046470 601 LEHAY 605 (888)
Q Consensus 601 l~~~~ 605 (888)
+++|.
T Consensus 112 l~~n~ 116 (239)
T 2xwt_C 112 IFNTG 116 (239)
T ss_dssp EEEEC
T ss_pred CCCCC
Confidence 54443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=9.7e-17 Score=168.71 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=59.5
Q ss_pred CchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEEeccCCcccccC-cccccCCccceecc
Q 046470 524 PRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHLDLSWTEITGLP-QELKALEKLRYLNL 601 (888)
Q Consensus 524 ~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~l 601 (888)
++|++|++++|.++.++...|.++++|++|++++|.++.++. .+..+++|++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 345556666665555555445556666666666666555532 4555666666666666655543 34555666666666
Q ss_pred ccccccCCccccccCCCCCCcEEeccCCCC
Q 046470 602 EHAYMLSIIPHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 602 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 631 (888)
++|.+ ..++...++++++|++|++++|..
T Consensus 108 ~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l 136 (276)
T 2z62_A 108 VETNL-ASLENFPIGHLKTLKELNVAHNLI 136 (276)
T ss_dssp TTSCC-CCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCCc-cccCchhcccCCCCCEEECcCCcc
Confidence 66544 333332255566666666655544
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.2e-16 Score=164.08 Aligned_cols=100 Identities=19% Similarity=0.303 Sum_probs=78.3
Q ss_pred hhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEEeccCCc-ccccCc-ccccCCccceecccccc
Q 046470 529 LLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHLDLSWTE-ITGLPQ-ELKALEKLRYLNLEHAY 605 (888)
Q Consensus 529 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~-i~~Lp~-~i~~L~~L~~L~l~~~~ 605 (888)
+.+..+.++.+|. + ..+|++|++++|.++.+|. .++.+++|++|++++|. ++.+|. .+.++++|++|++++|+
T Consensus 16 ~~v~c~~l~~ip~--~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 16 FRVTCKDIQRIPS--L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp TEEEECSCSSCCC--C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred ceeEccCccccCC--C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 3333333556665 2 3489999999999998865 68899999999999996 888865 68899999999999833
Q ss_pred ccCCccccccCCCCCCcEEeccCCCCC
Q 046470 606 MLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 606 ~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
.+..+|...+.++++|++|++.+|...
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEECCC
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCCCCc
Confidence 447777666889999999999887654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=8.6e-17 Score=168.52 Aligned_cols=132 Identities=26% Similarity=0.397 Sum_probs=95.3
Q ss_pred cccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCE
Q 046470 497 AVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHH 575 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~ 575 (888)
....+++++.|++.+|.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++|.++.+|.. ++.+++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34456778888888888877777777778888888877776654 367777888888888877776543 577778888
Q ss_pred EeccCCcccccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCC
Q 046470 576 LDLSWTEITGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 576 L~L~~~~i~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 631 (888)
|++++|.++.+|.. ++++++|++|++++|.+ ..+|...++++++|++|++++|..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCCCCc
Confidence 88888777776544 67777788888877755 455555467777777777776644
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.3e-16 Score=167.09 Aligned_cols=128 Identities=21% Similarity=0.331 Sum_probs=102.1
Q ss_pred cceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEeccCC
Q 046470 503 GAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDLSWT 581 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~ 581 (888)
..+.++++++.+..+|... .++++.|++++|.++.+++..|.++++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4567888888888877521 26788899999888888877788889999999999988888765 477889999999999
Q ss_pred cccccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 582 EITGLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 582 ~i~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
.++.+|. .+.++++|++|++++|.+ ..+|...+..+++|++|++++|...
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCcCCHhHcccccCCCEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCcCC
Confidence 8888765 468888999999988866 5566555788888999988887654
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=3.6e-16 Score=163.66 Aligned_cols=104 Identities=24% Similarity=0.290 Sum_probs=75.0
Q ss_pred chhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEEeccCCcccccCcc-cccCCccceeccc
Q 046470 525 RLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHLDLSWTEITGLPQE-LKALEKLRYLNLE 602 (888)
Q Consensus 525 ~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~ 602 (888)
.+++++++++.++.+|..+ .++|++|+|++|.++.+|. .++++++|++|++++|.++.+|.. +.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3566777777777777542 2567888888888877754 577788888888888888777655 4678888888888
Q ss_pred cccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 603 HAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 603 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
+|.+ ..+|...+.++++|++|++++|...
T Consensus 94 ~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 94 DNKL-QALPIGVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp SSCC-CCCCTTTTTTCSSCCEEECCSSCCC
T ss_pred CCcC-CcCCHhHcccccCCCEEECCCCccC
Confidence 8765 5566555677788888888776554
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=3.3e-18 Score=194.54 Aligned_cols=312 Identities=18% Similarity=0.177 Sum_probs=180.9
Q ss_pred ccccceEEEEecCCCccCC------CCCCCC-chhhhhhccCCcccc----cchHHhcCCcccEEEcCCCCCccc-Chhh
Q 046470 500 EWEGAKRISLRGNRFDSLS------EIPTSP-RLITLLLIANSIDEI----TDGFFQSMSSLRVLSLGSNALSKL-PSGI 567 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~l~------~~~~~~-~Lr~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i 567 (888)
.+++++.|++++|.+.... .+.... +|++|++++|.++.. .+..+..+++|++|++++|.++.. +..+
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 3456666666666654311 111111 566666666665532 234456666666666666666532 2222
Q ss_pred h-----cccCCCEEeccCCcccc-----cCcccccCCccceeccccccccCCcccc----ccCCCCCCcEEeccCCCCCC
Q 046470 568 S-----SLVSLHHLDLSWTEITG-----LPQELKALEKLRYLNLEHAYMLSIIPHQ----LISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 568 ~-----~L~~L~~L~L~~~~i~~-----Lp~~i~~L~~L~~L~l~~~~~l~~lp~~----~i~~L~~L~~L~l~~~~~~~ 633 (888)
. .+.+|++|++++|.++. ++..+..+++|++|++++|.+....+.. +...+++|++|++++|....
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 2 23456677776666654 3455566667777777776542221211 01134567777777665542
Q ss_pred cccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHH--hhhc-CCccccceEEEEEeecCCCcccc----cccc
Q 046470 634 VTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQ--KFFK-YPKLVSITQSVVVYQCECPLFNV----LHLA 706 (888)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~--~~~~-~~~l~~~L~~L~l~~~~~~~~~~----l~l~ 706 (888)
. ........+..+++|+.|+++.+...... .+.. .......++.|++.++....... ..+.
T Consensus 214 ~------------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 214 D------------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp T------------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred H------------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 1 01123456778899999999887654321 1111 11123578999999886644321 1256
Q ss_pred ccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCC------chhhhccCcceEeeecccccchh
Q 046470 707 YMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDL------TWLVFVQNLKELEISRCHAVEDI 780 (888)
Q Consensus 707 ~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~L~~c~~l~~l 780 (888)
.+++|++|++++|.+....+..+.. ......++|+.|+|++|. ++.. ..+..+++|++|+|++|. +++.
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~---~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~ 356 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCE---TLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDA 356 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHH---HHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHH
T ss_pred hCCCcceEECCCCCCchHHHHHHHH---HhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccc
Confidence 6899999999998876432222110 001134699999999995 4432 246678999999999974 6554
Q ss_pred cccccccccccccCccCccccccceeecccccccc-----ccCCCCCCCCCccEEEecCCC
Q 046470 781 ISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLK-----SIYPNPLPFPKLKKIQIYSCP 836 (888)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~-----~i~~~~~~~p~L~~L~i~~C~ 836 (888)
...... + ......++|+.|+|++| .++ .++.....+++|++|++.+|+
T Consensus 357 ~~~~l~----~---~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 357 GVRELC----Q---GLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHH----H---HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cHHHHH----H---HHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 221000 0 01112679999999998 455 444444458999999999984
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=1.8e-16 Score=166.15 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=59.8
Q ss_pred CchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecccc
Q 046470 524 PRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEH 603 (888)
Q Consensus 524 ~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 603 (888)
..+..+.+..+.+..... +..+++|+.|++++|.++.++ .++.+++|++|++++|.++.++ .+.++++|++|++++
T Consensus 19 ~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHHhcCcccccccc--cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 344455555555444332 445666666666666666554 4566666666666666666653 566666666666666
Q ss_pred ccccCCccccccCCCCCCcEEeccCCCC
Q 046470 604 AYMLSIIPHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 604 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 631 (888)
|.+ ..+|...++++++|++|++++|..
T Consensus 95 n~l-~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 95 NQL-QSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECTTSCC
T ss_pred Ccc-CccChhHhcCCcCCCEEECCCCcC
Confidence 654 344444456666666666665544
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=2.5e-16 Score=165.50 Aligned_cols=203 Identities=25% Similarity=0.268 Sum_probs=158.3
Q ss_pred ccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEEec
Q 046470 502 EGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDL 578 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L 578 (888)
.+++.|++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999998876 4788999999999999999999888999999999999999999875 67999999999999
Q ss_pred cCCcccccCc-ccccCCccceeccccccccC-CccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhh
Q 046470 579 SWTEITGLPQ-ELKALEKLRYLNLEHAYMLS-IIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELL 656 (888)
Q Consensus 579 ~~~~i~~Lp~-~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 656 (888)
++|.++.++. .++++++|++|++++|.+.. .+|.. +.++++|++|++++|..... ....+..+.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~ 173 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI-------------YCTDLRVLH 173 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE-------------CGGGGHHHH
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcC-------------CHHHhhhhh
Confidence 9999999765 69999999999999997644 25665 89999999999999987532 222445555
Q ss_pred cCCCCc-eEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCcccccc
Q 046470 657 GLKHLN-FLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKL 735 (888)
Q Consensus 657 ~L~~L~-~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~ 735 (888)
+++.|. .|+++.+... ......+ ...+|+.|++++|.+..+....+.
T Consensus 174 ~L~~l~l~L~ls~n~l~--------------------------~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~----- 221 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMN--------------------------FIQPGAF-KEIRLKELALDTNQLKSVPDGIFD----- 221 (276)
T ss_dssp TCTTCCEEEECCSSCCC--------------------------EECTTSS-CSCCEEEEECCSSCCSCCCTTTTT-----
T ss_pred hccccceeeecCCCccc--------------------------ccCcccc-CCCcccEEECCCCceeecCHhHhc-----
Confidence 565554 4554433221 1111112 224799999999888866444333
Q ss_pred ccccCCCccEEEEecCCC
Q 046470 736 FQSGFRSLSIVSVENCEK 753 (888)
Q Consensus 736 ~~~~l~~L~~L~L~~c~~ 753 (888)
.+++|+.|+|++|+.
T Consensus 222 ---~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 222 ---RLTSLQKIWLHTNPW 236 (276)
T ss_dssp ---TCCSCCEEECCSSCB
T ss_pred ---ccccccEEEccCCcc
Confidence 588999999998853
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.6e-15 Score=160.14 Aligned_cols=197 Identities=19% Similarity=0.167 Sum_probs=118.7
Q ss_pred CCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCcccccCcccccCCcccee
Q 046470 521 PTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYL 599 (888)
Q Consensus 521 ~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 599 (888)
..++++++++++++.++.+|..+ .+.|++|+|++|.++.+ |..+..+++|++|++++|.++.+|.. +.+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 34555666666666666666543 24666666666666655 44566666666666666666666543 566666666
Q ss_pred ccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhc
Q 046470 600 NLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFK 679 (888)
Q Consensus 600 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~ 679 (888)
++++|.+ ..+|.. +.++++|++|++++|.+..
T Consensus 83 ~Ls~N~l-~~l~~~-~~~l~~L~~L~l~~N~l~~---------------------------------------------- 114 (290)
T 1p9a_G 83 DLSHNQL-QSLPLL-GQTLPALTVLDVSFNRLTS---------------------------------------------- 114 (290)
T ss_dssp ECCSSCC-SSCCCC-TTTCTTCCEEECCSSCCCC----------------------------------------------
T ss_pred ECCCCcC-CcCchh-hccCCCCCEEECCCCcCcc----------------------------------------------
Confidence 6666644 455553 5566666666666554321
Q ss_pred CCccccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCch
Q 046470 680 YPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLTW 759 (888)
Q Consensus 680 ~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~ 759 (888)
.....+..+++|++|++++|.+..+.+..+. .+++|+.|+|++| .++.++.
T Consensus 115 --------------------l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~~L~~L~L~~N-~l~~l~~ 165 (290)
T 1p9a_G 115 --------------------LPLGALRGLGELQELYLKGNELKTLPPGLLT--------PTPKLEKLSLANN-NLTELPA 165 (290)
T ss_dssp --------------------CCSSTTTTCTTCCEEECTTSCCCCCCTTTTT--------TCTTCCEEECTTS-CCSCCCT
T ss_pred --------------------cCHHHHcCCCCCCEEECCCCCCCccChhhcc--------cccCCCEEECCCC-cCCccCH
Confidence 1111245567788888888777765443332 4677778888777 4555542
Q ss_pred --hhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccc
Q 046470 760 --LVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNV 812 (888)
Q Consensus 760 --l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 812 (888)
+..+++|+.|+|++| .++.++. .....++|+.|.|.+++
T Consensus 166 ~~~~~l~~L~~L~L~~N-~l~~ip~-------------~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQEN-SLYTIPK-------------GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCT-------------TTTTTCCCSEEECCSCC
T ss_pred HHhcCcCCCCEEECCCC-cCCccCh-------------hhcccccCCeEEeCCCC
Confidence 556777777777774 3555543 33445677777777654
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=1.6e-16 Score=186.83 Aligned_cols=309 Identities=11% Similarity=0.047 Sum_probs=166.9
Q ss_pred ccccceEEEEecCCCccCC------CCCCCCchhhhhhccCCccccc----chHHhcCCcccEEEcCCCCCcccChhhhc
Q 046470 500 EWEGAKRISLRGNRFDSLS------EIPTSPRLITLLLIANSIDEIT----DGFFQSMSSLRVLSLGSNALSKLPSGISS 569 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~l~------~~~~~~~Lr~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 569 (888)
.+++++.|++++|.+.... ....+++|++|++++|.++.+. ...+..+++|++|++++|.+..+|..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 4567888888877654321 1235677888888877765332 23356778888888888877777777788
Q ss_pred ccCCCEEeccCCcc----cccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccc
Q 046470 570 LVSLHHLDLSWTEI----TGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLC 645 (888)
Q Consensus 570 L~~L~~L~L~~~~i----~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 645 (888)
+++|++|+++++.. ...+..+..+++|+.|+++++. ...+|.. +..+++|++|++++|...
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~l~------------- 306 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYALLE------------- 306 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGCCEEEETTCCCC-------------
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCCcEEecCCCcCC-------------
Confidence 88888888875321 1244556667777777776652 2455553 667788888888877633
Q ss_pred cchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEee----------cCCCccc-ccc-ccccCCcce
Q 046470 646 DDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQ----------CECPLFN-VLH-LAYMENLQE 713 (888)
Q Consensus 646 ~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~----------~~~~~~~-~l~-l~~l~~L~~ 713 (888)
.......+..+++|+.|++. +.... ..+......++.|+.|.+.+ +...... ... ...+++|++
T Consensus 307 --~~~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 307 --TEDHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp --HHHHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred --HHHHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 12222335667777777776 22111 11111112234567777763 2221111 111 234566666
Q ss_pred EEeecCCcceeeecCCcc------------------ccc--------cccccCCCccEEEEecCCC-CCC--Cchhh-hc
Q 046470 714 LHLEDSDLEEMRIDGPEE------------------VKK--------LFQSGFRSLSIVSVENCEK-MKD--LTWLV-FV 763 (888)
Q Consensus 714 L~l~~~~l~~l~~~~~~~------------------~~~--------~~~~~l~~L~~L~L~~c~~-l~~--l~~l~-~l 763 (888)
|++..+.+....+..+.. .+. .....+++|+.|+|++|.. +.. +..+. .+
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~ 462 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence 666544443211111110 000 0001244555555544432 111 11122 24
Q ss_pred cCcceEeeecccccchhcccccccccccccCccCccccccceeecccccccccc--CCCCCCCCCccEEEecCCCCCCCC
Q 046470 764 QNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSI--YPNPLPFPKLKKIQIYSCPELKKL 841 (888)
Q Consensus 764 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i--~~~~~~~p~L~~L~i~~C~~L~~l 841 (888)
++|+.|+|++|. +++... . .....+++|+.|+|++|+ ++.- +.....+|+|+.|++++|+ ++.-
T Consensus 463 ~~L~~L~L~~n~-l~~~~~----------~-~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 463 PNVRWMLLGYVG-ESDEGL----------M-EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp TTCCEEEECSCC-SSHHHH----------H-HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred ccceEeeccCCC-CCHHHH----------H-HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 555555555443 222100 0 123567889999999986 4331 2222347899999999997 5543
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=1.9e-17 Score=188.32 Aligned_cols=318 Identities=18% Similarity=0.161 Sum_probs=148.4
Q ss_pred cceEEEEecCCCccCC--C-CCCCCchhhhhhccCCccccc----chHHhcCCcccEEEcCCCCCccc-Chhh-hccc--
Q 046470 503 GAKRISLRGNRFDSLS--E-IPTSPRLITLLLIANSIDEIT----DGFFQSMSSLRVLSLGSNALSKL-PSGI-SSLV-- 571 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~--~-~~~~~~Lr~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~~~i~~l-p~~i-~~L~-- 571 (888)
++++|++++|.+...+ . +..+++|++|++++|.++... +..+..+++|++|+|++|.++.. +..+ ..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4566666666654322 1 344566666666666654321 23355566666666666666532 2222 2233
Q ss_pred --CCCEEeccCCccc-----ccCcccccCCccceeccccccccCCcc----ccccCCCCCCcEEeccCCCCCCccccccc
Q 046470 572 --SLHHLDLSWTEIT-----GLPQELKALEKLRYLNLEHAYMLSIIP----HQLISGFSKLEVLRLLGCGSNCVTVTEEE 640 (888)
Q Consensus 572 --~L~~L~L~~~~i~-----~Lp~~i~~L~~L~~L~l~~~~~l~~lp----~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 640 (888)
+|++|++++|.++ .+|..+..+++|++|++++|.+....+ ..+...+++|++|++++|.....
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------ 157 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA------ 157 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG------
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH------
Confidence 4666666666665 245566666666666666665422111 11122345666666666654321
Q ss_pred CcccccchhhHHHHhhcCCCCceEEEEEechhhHH--hhhcC-CccccceEEEEEeecCCCccc----cccccccCCcce
Q 046470 641 GNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQ--KFFKY-PKLVSITQSVVVYQCECPLFN----VLHLAYMENLQE 713 (888)
Q Consensus 641 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~--~~~~~-~~l~~~L~~L~l~~~~~~~~~----~l~l~~l~~L~~ 713 (888)
........+..+++|+.|+++.+...... .+... ......++.|++.++...... ...+..+++|++
T Consensus 158 ------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 158 ------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp ------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred ------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE
Confidence 01112334455566666666655433211 11110 001125566666655443221 112344566666
Q ss_pred EEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCC-----Cc-hhhhccCcceEeeecccccchhcccccc-
Q 046470 714 LHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKD-----LT-WLVFVQNLKELEISRCHAVEDIISVDKL- 786 (888)
Q Consensus 714 L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~- 786 (888)
|++++|.+.......+.. .....+++|++|++++| .++. ++ .+..+++|++|+|++|. +++.......
T Consensus 232 L~Ls~n~l~~~~~~~l~~---~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~ 306 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCP---GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCE 306 (461)
T ss_dssp EECCSSBCHHHHHHHHHH---HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHH
T ss_pred EeccCCcCChHHHHHHHH---HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHH
Confidence 666665544321110000 00012455555555555 2333 11 23345555555555542 2221100000
Q ss_pred ------cccccc--------------cCccCccccccceeeccccccccccCCC------CCCCCCccEEEecCCCCCC
Q 046470 787 ------RDISEI--------------IGSEHNFFAQLEALNIFNNVNLKSIYPN------PLPFPKLKKIQIYSCPELK 839 (888)
Q Consensus 787 ------~~~~~~--------------~~~~~~~~p~L~~L~L~~~~~L~~i~~~------~~~~p~L~~L~i~~C~~L~ 839 (888)
..+..+ .+..+..+++|++|+|++| .+...... ....++|++|++.+| +++
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 000000 0012334578888888877 34432211 012578999999888 455
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=8.3e-17 Score=174.64 Aligned_cols=208 Identities=19% Similarity=0.189 Sum_probs=116.8
Q ss_pred HhcC--CcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccc--cCcccccCCccceeccccccccCCccccccCCCC
Q 046470 544 FQSM--SSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITG--LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFS 619 (888)
Q Consensus 544 ~~~l--~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~--Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~ 619 (888)
+..+ +++++|++++|.+...+..+..+++|++|++++|.++. +|..+.++++|++|++++|.+....|.. +++++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~ 142 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNS 142 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCC
Confidence 4444 66777777777666655556667777777777776654 5666667777777777777554444543 56677
Q ss_pred CCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEe-chhhHHhhhcCCccccceEEEEEeecCCC
Q 046470 620 KLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFR-SSLAVQKFFKYPKLVSITQSVVVYQCECP 698 (888)
Q Consensus 620 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~-~~~~~~~~~~~~~l~~~L~~L~l~~~~~~ 698 (888)
+|++|++++|.... .......+.++++|+.|+++.+ ..... .+
T Consensus 143 ~L~~L~L~~~~~l~--------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~--------------------- 186 (336)
T 2ast_B 143 NLVRLNLSGCSGFS--------------EFALQTLLSSCSRLDELNLSWCFDFTEK-HV--------------------- 186 (336)
T ss_dssp TCSEEECTTCBSCC--------------HHHHHHHHHHCTTCCEEECCCCTTCCHH-HH---------------------
T ss_pred CCCEEECCCCCCCC--------------HHHHHHHHhcCCCCCEEcCCCCCCcChH-HH---------------------
Confidence 77777777663221 1122333555666666666554 22110 00
Q ss_pred ccccccccccC-CcceEEeecCC--cceee-ecCCccccccccccCCCccEEEEecCCCCCC--CchhhhccCcceEeee
Q 046470 699 LFNVLHLAYME-NLQELHLEDSD--LEEMR-IDGPEEVKKLFQSGFRSLSIVSVENCEKMKD--LTWLVFVQNLKELEIS 772 (888)
Q Consensus 699 ~~~~l~l~~l~-~L~~L~l~~~~--l~~l~-~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~ 772 (888)
...+..++ +|++|+++++. +.... +.. ...+++|+.|+|++|..++. ++.+..+++|++|+|+
T Consensus 187 ---~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~--------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 187 ---QVAVAHVSETITQLNLSGYRKNLQKSDLSTL--------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp ---HHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred ---HHHHHhcccCCCEEEeCCCcccCCHHHHHHH--------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 00134455 66666666653 22100 001 12466777777777754432 4456677777777777
Q ss_pred cccccchhcccccccccccccCccCccccccceeecccc
Q 046470 773 RCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNN 811 (888)
Q Consensus 773 ~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 811 (888)
+|..+.+... ..+..+|+|+.|++++|
T Consensus 256 ~~~~~~~~~~------------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 256 RCYDIIPETL------------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGG------------GGGGGCTTCCEEECTTS
T ss_pred CCCCCCHHHH------------HHHhcCCCCCEEeccCc
Confidence 7753332211 13455777777777776
No 87
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=1.2e-14 Score=158.64 Aligned_cols=284 Identities=16% Similarity=0.107 Sum_probs=174.6
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecc------------hHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVST------------LQD 222 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~------------l~~ 222 (888)
..++||+.+++++.+++.. + +++.|+|++|+|||||++.+.+.. . .+|+++.. +..
T Consensus 12 ~~~~gR~~el~~L~~~l~~--~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN--Y--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH--C--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhc--C--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHH
Confidence 5689999999999999876 2 799999999999999999998764 1 66776542 233
Q ss_pred HHHHHcCCC--------------hh--hhcCCCHHHHHHHHHHHhcc-CcEEEEEccCCCccc---------hhhhCCCC
Q 046470 223 DIGKRIGFS--------------EN--WWKKKSPEEKAVDISSILSR-KEFVLLLDDIWKPIN---------LKDMGVPL 276 (888)
Q Consensus 223 ~i~~~l~~~--------------~~--~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~l~~~l 276 (888)
.+...+... +. .....+..++...+.+..+. ++.+|||||++.... +..+.. +
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~-~ 158 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY-A 158 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH-H
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH-H
Confidence 444443310 00 00123455666666666643 499999999986432 122211 1
Q ss_pred CCCCCCcEEEEEecchhhhhc-----------cC-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHh
Q 046470 277 QNLNAGSKIVLTTRSVDVCDQ-----------MD-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLAREC 343 (888)
Q Consensus 277 ~~~~~gs~iivTtR~~~v~~~-----------~~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 343 (888)
.+...+.++|+|++...+... .+ .. .+++.+|+.+|+.+++.+.+....... -.+.+..|++.|
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i~~~t 235 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEAVELL 235 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHH
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHh
Confidence 112247889999887643111 11 12 789999999999999988654322111 256789999999
Q ss_pred CCCccHHHHHHHHhccCCChhHHHHHHHHHHhcccccCCchHHHHhhhhhccccc---hHHHHHHHhhhccCCCCccccH
Q 046470 344 GGLPLALKTVGRAMKSRSNIGDWKRAIKKIRTSASKFSGMEEKVFSRLKFSYDSL---SDELRSCLLYCCLYPEDYKISK 420 (888)
Q Consensus 344 ~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~cfl~~s~fp~~~~i~~ 420 (888)
+|+|+++..++..+....+...+. ..+.. .+...+.-.+..+ ++..+..+..+|. + ..+.
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~ 298 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAM---KRTLE----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRW 298 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHH---HHHHH----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSH
T ss_pred CCCHHHHHHHHHHHhccccHhHHH---HHHHH----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCH
Confidence 999999999987654322222221 11111 1111111112222 6778889888887 2 1344
Q ss_pred HHHHHHHHHcCCCcCcchhHHHHHHHHHhccccccCCcchhhhhHHHHHHH
Q 046470 421 RELIDYWISEGFVDDFDDGWEFINDLLHACLLEEEGDDHVKMHDMIREMSL 471 (888)
Q Consensus 421 ~~li~~w~a~g~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~mHdlv~~~a~ 471 (888)
..+.....+..--.+......+++.|.+.+++...+..+...|.+++++.+
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 299 SLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 555444322110012233678999999999998764334445777777643
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=1.8e-15 Score=164.73 Aligned_cols=238 Identities=15% Similarity=0.136 Sum_probs=158.8
Q ss_pred hhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEEeccCCcccc-cCc-ccccCCccceecccc
Q 046470 527 ITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHLDLSWTEITG-LPQ-ELKALEKLRYLNLEH 603 (888)
Q Consensus 527 r~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~-Lp~-~i~~L~~L~~L~l~~ 603 (888)
++++.++++++.+|.++ .+++++|+|++|.|+.+|. .|.++++|++|+|++|.+.+ +|. .+.++++|+.+...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666777787777653 3578888888888888875 47888888888888887654 554 467787777654444
Q ss_pred ccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCcc
Q 046470 604 AYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKL 683 (888)
Q Consensus 604 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l 683 (888)
++.+..+|.+.+..+++|++|++++|...... ...+....++..+++..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~----------------~~~~~~~~~l~~l~l~~~-------------- 138 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP----------------DVHKIHSLQKVLLDIQDN-------------- 138 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC----------------CCTTCCBSSCEEEEEESC--------------
T ss_pred CCcccccCchhhhhccccccccccccccccCC----------------chhhcccchhhhhhhccc--------------
Confidence 33446666666788888888888877654210 000111122233333211
Q ss_pred ccceEEEEEeecCCCcccccccccc-CCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc--hh
Q 046470 684 VSITQSVVVYQCECPLFNVLHLAYM-ENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT--WL 760 (888)
Q Consensus 684 ~~~L~~L~l~~~~~~~~~~l~l~~l-~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l 760 (888)
..........+..+ ..++.|++++|.++.+....+. ..+|+.|.+.++..++.++ .+
T Consensus 139 -----------~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~---------~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 139 -----------INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN---------GTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp -----------TTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST---------TEEEEEEECTTCTTCCCCCTTTT
T ss_pred -----------cccccccccchhhcchhhhhhccccccccCCChhhcc---------ccchhHHhhccCCcccCCCHHHh
Confidence 01111122223333 4688899999999877555432 5689999998877888887 37
Q ss_pred hhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccccccccccCCCCCCCCCccEEEecC
Q 046470 761 VFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPLPFPKLKKIQIYS 834 (888)
Q Consensus 761 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~ 834 (888)
..+++|+.|+|++| .++.++. ..|.+|+.|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 199 ~~l~~L~~LdLs~N-~l~~lp~---------------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 199 HGASGPVILDISRT-RIHSLPS---------------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTEECCSEEECTTS-CCCCCCS---------------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccCcccchhhcCCC-CcCccCh---------------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 89999999999985 5776643 3477888888888888888873 55689999999864
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=2.6e-15 Score=163.43 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=169.9
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCc-ccCh-hhhcccCCCE-EeccCC
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALS-KLPS-GISSLVSLHH-LDLSWT 581 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~-~lp~-~i~~L~~L~~-L~L~~~ 581 (888)
+.++-++++++++|.-. .+++++|++++|.++.++.+.|.++++|++|+|++|.+. .+|. .+.++++|+. +.+++|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45667778888887521 368999999999999999888999999999999999875 4654 5788888775 566678
Q ss_pred ccccc-CcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCC
Q 046470 582 EITGL-PQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKH 660 (888)
Q Consensus 582 ~i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 660 (888)
+++.+ |..+..+++|++|++++|.+ ..+|...+....++..|++.++..... .....+..+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~---------------l~~~~f~~~~- 153 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHT---------------IERNSFVGLS- 153 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCE---------------ECTTSSTTSB-
T ss_pred cccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhcccccccc---------------ccccchhhcc-
Confidence 99997 56689999999999999976 666654456677788888876543211 0000111111
Q ss_pred CceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeec-CCcceeeecCCcccccccccc
Q 046470 661 LNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLED-SDLEEMRIDGPEEVKKLFQSG 739 (888)
Q Consensus 661 L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~-~~l~~l~~~~~~~~~~~~~~~ 739 (888)
..++.|.+.++....+....+ ...+|+.|.+.+ |.++.++...+. .
T Consensus 154 ------------------------~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~--------~ 200 (350)
T 4ay9_X 154 ------------------------FESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFH--------G 200 (350)
T ss_dssp ------------------------SSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTT--------T
T ss_pred ------------------------hhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhc--------c
Confidence 133444444444332322223 335789999976 778877555544 5
Q ss_pred CCCccEEEEecCCCCCCCchhhhccCcceEeeecccccchhcccccccccccccCccCccccccceeeccc
Q 046470 740 FRSLSIVSVENCEKMKDLTWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFN 810 (888)
Q Consensus 740 l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~ 810 (888)
+++|+.|+|++| .++.+|. ..+.+|+.|.+.+|+.++.++. +..|++|+.+++.+
T Consensus 201 l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~--------------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 ASGPVILDISRT-RIHSLPS-YGLENLKKLRARSTYNLKKLPT--------------LEKLVALMEASLTY 255 (350)
T ss_dssp EECCSEEECTTS-CCCCCCS-SSCTTCCEEECTTCTTCCCCCC--------------TTTCCSCCEEECSC
T ss_pred CcccchhhcCCC-CcCccCh-hhhccchHhhhccCCCcCcCCC--------------chhCcChhhCcCCC
Confidence 899999999999 5777764 4477888898888888887753 56789999999975
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=2.6e-14 Score=156.25 Aligned_cols=283 Identities=12% Similarity=0.141 Sum_probs=169.3
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecc-----------hHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVST-----------LQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----------l~~~ 223 (888)
..++||+.+++.+.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+.+.. +...
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHH
Confidence 568999999999999 643 699999999999999999999875 22 257777542 2222
Q ss_pred HHHHcC------------------CChh----hh-----cCCCHHHHHHHHHHHhccCcEEEEEccCCCcc-----chhh
Q 046470 224 IGKRIG------------------FSEN----WW-----KKKSPEEKAVDISSILSRKEFVLLLDDIWKPI-----NLKD 271 (888)
Q Consensus 224 i~~~l~------------------~~~~----~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~ 271 (888)
+.+.+. .... .. .......+...+.+.-+ ++++|||||++... ++..
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 222220 0000 00 01234444444444322 49999999997632 2222
Q ss_pred hCCCCCCCCCCcEEEEEecchhhhhc----------c-CC--ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHH
Q 046470 272 MGVPLQNLNAGSKIVLTTRSVDVCDQ----------M-DA--EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKT 338 (888)
Q Consensus 272 l~~~l~~~~~gs~iivTtR~~~v~~~----------~-~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~ 338 (888)
+...+.+...+.++|+|+|....... . +. ..+++.+|+.+|+.+++.+.+........ . . ..
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~---~-~~ 234 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D---Y-EV 234 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C---H-HH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c---H-HH
Confidence 21122222246789999997653211 1 11 27899999999999999986543221111 1 2 89
Q ss_pred HHHHhCCCccHHHHHHHHhccCCChhHHHHH-HHHHHhcccccCCchHHHHhhhh-hcc--ccchHHHHHHHhhhccCCC
Q 046470 339 LARECGGLPLALKTVGRAMKSRSNIGDWKRA-IKKIRTSASKFSGMEEKVFSRLK-FSY--DSLSDELRSCLLYCCLYPE 414 (888)
Q Consensus 339 i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~-~~~l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~k~cfl~~s~fp~ 414 (888)
|++.|+|+|+++..++..+....+...|..- .+... ..+..-+. +.+ ..+++..+..+..+|.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--- 301 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFENFLHGREIARKRYLNIMRTLSK--- 301 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHHHhhccccccHHHHHHHHHHHc---
Confidence 9999999999999999876543333333221 11100 01111111 111 1688899999999998
Q ss_pred CccccHHHHHHHHH-HcCCCcCcchhHHHHHHHHHhccccccCCcchhhhhHHHHHH
Q 046470 415 DYKISKRELIDYWI-SEGFVDDFDDGWEFINDLLHACLLEEEGDDHVKMHDMIREMS 470 (888)
Q Consensus 415 ~~~i~~~~li~~w~-a~g~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~mHdlv~~~a 470 (888)
+. +...+....- ..|.-.+......+++.|++.+++...+..+...|++++++.
T Consensus 302 g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred CC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 22 4444443221 123101223367899999999999876433334678888753
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=1.9e-15 Score=159.65 Aligned_cols=188 Identities=21% Similarity=0.272 Sum_probs=133.0
Q ss_pred CchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecccc
Q 046470 524 PRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEH 603 (888)
Q Consensus 524 ~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 603 (888)
.++..+.+..+.+..+.. +..+++|++|++++|.++.+| .+..+++|++|++++|.++.++. +.++++|++|++++
T Consensus 24 ~~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred HHHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC
Confidence 445555666666655443 567788888888888888876 47888888888888888888776 88888888888888
Q ss_pred ccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCcc
Q 046470 604 AYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKL 683 (888)
Q Consensus 604 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l 683 (888)
|.+ ..+|. +..+++|++|++++|.... +..+..+++|+.|+++.+....
T Consensus 100 n~l-~~~~~--l~~l~~L~~L~L~~n~i~~------------------~~~l~~l~~L~~L~l~~n~l~~---------- 148 (291)
T 1h6t_A 100 NKV-KDLSS--LKDLKKLKSLSLEHNGISD------------------INGLVHLPQLESLYLGNNKITD---------- 148 (291)
T ss_dssp SCC-CCGGG--GTTCTTCCEEECTTSCCCC------------------CGGGGGCTTCCEEECCSSCCCC----------
T ss_pred CcC-CCChh--hccCCCCCEEECCCCcCCC------------------ChhhcCCCCCCEEEccCCcCCc----------
Confidence 865 55654 7888888888888876642 1235566666666665443211
Q ss_pred ccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCchhhhc
Q 046470 684 VSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLTWLVFV 763 (888)
Q Consensus 684 ~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l 763 (888)
. ..+..+++|+.|++++|.+..+.+ + ..+++|+.|+|++| .++.++.+..+
T Consensus 149 ----------------~--~~l~~l~~L~~L~L~~N~l~~~~~--l--------~~l~~L~~L~L~~N-~i~~l~~l~~l 199 (291)
T 1h6t_A 149 ----------------I--TVLSRLTKLDTLSLEDNQISDIVP--L--------AGLTKLQNLYLSKN-HISDLRALAGL 199 (291)
T ss_dssp ----------------C--GGGGGCTTCSEEECCSSCCCCCGG--G--------TTCTTCCEEECCSS-CCCBCGGGTTC
T ss_pred ----------------c--hhhccCCCCCEEEccCCccccchh--h--------cCCCccCEEECCCC-cCCCChhhccC
Confidence 1 125567788888888877765432 2 25778888888887 56667777888
Q ss_pred cCcceEeeeccc
Q 046470 764 QNLKELEISRCH 775 (888)
Q Consensus 764 ~~L~~L~L~~c~ 775 (888)
++|+.|++++|.
T Consensus 200 ~~L~~L~l~~n~ 211 (291)
T 1h6t_A 200 KNLDVLELFSQE 211 (291)
T ss_dssp TTCSEEEEEEEE
T ss_pred CCCCEEECcCCc
Confidence 888888888754
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=2.8e-16 Score=184.65 Aligned_cols=314 Identities=14% Similarity=0.065 Sum_probs=170.5
Q ss_pred cccccceEEEEecCCCccCC-----C-CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCC----cccChhhh
Q 046470 499 EEWEGAKRISLRGNRFDSLS-----E-IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNAL----SKLPSGIS 568 (888)
Q Consensus 499 ~~~~~lr~L~l~~n~~~~l~-----~-~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i----~~lp~~i~ 568 (888)
..+++++.|++++|.+..+. . +..+++|++|++++|.+..++ ..+..+++|+.|+++.+.. ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 34678999999998886332 1 356889999999999887766 5588889999998875321 13344556
Q ss_pred cccCCCEEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcc---------cccc
Q 046470 569 SLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVT---------VTEE 639 (888)
Q Consensus 569 ~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~---------~~~~ 639 (888)
.+.+|+.|+++++....+|..+..+++|++|++++|.+....+..++.++++|++|++.++-..... ....
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 6666666666665555566666666666666666665322212122455666666665521100000 0000
Q ss_pred cCcc----------cccchhhHHH-HhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeecC-CCcccc-----
Q 046470 640 EGNV----------LCDDAGLLMK-ELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCE-CPLFNV----- 702 (888)
Q Consensus 640 ~~~~----------~~~~~~~~~~-~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~-~~~~~~----- 702 (888)
.... ........+. -...+++|+.|++..+.... ..+......++.|+.|.+.++. ......
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 0000 0000111111 12335556666554333221 1111111112356666665432 111111
Q ss_pred -c--cccccCCcceEEeecC--CcceeeecCCccccccccccCCCccEEEEecCCCCCC--Cc-hhhhccCcceEeeecc
Q 046470 703 -L--HLAYMENLQELHLEDS--DLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKD--LT-WLVFVQNLKELEISRC 774 (888)
Q Consensus 703 -l--~l~~l~~L~~L~l~~~--~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~-~l~~l~~L~~L~L~~c 774 (888)
. .+.++++|++|+++.+ .+....+..+. ..+++|+.|+|++|. ++. ++ .+..+++|++|+|++|
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-------~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-------QYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-------HSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESC
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-------HhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCC
Confidence 0 1445667777777541 12211111111 247899999999985 543 23 4568899999999999
Q ss_pred cccchhcccccccccccccCccCccccccceeeccccccccccCCC--CCCCCCccEEEecCC
Q 046470 775 HAVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPN--PLPFPKLKKIQIYSC 835 (888)
Q Consensus 775 ~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~--~~~~p~L~~L~i~~C 835 (888)
. +++.... .....+|+|+.|+|++|. ++..... ...+|.|....+...
T Consensus 499 ~-l~~~~~~-----------~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 499 C-FSERAIA-----------AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp C-CBHHHHH-----------HHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred C-CcHHHHH-----------HHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 8 5443110 133468999999999996 6544322 224677777666543
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=2.6e-15 Score=174.00 Aligned_cols=188 Identities=21% Similarity=0.275 Sum_probs=109.8
Q ss_pred CchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecccc
Q 046470 524 PRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEH 603 (888)
Q Consensus 524 ~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 603 (888)
..+..+.+..+.+..+.. +..+++|+.|++++|.+..+| .++.|++|++|+|++|.++.+|. +..+++|++|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 344455555555544433 455666666666666666665 46666666666666666666654 66666666666666
Q ss_pred ccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCcc
Q 046470 604 AYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKL 683 (888)
Q Consensus 604 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l 683 (888)
|.+ ..+|. +..|++|++|++++|.+.. +..+..+++|+.|+++.+....
T Consensus 97 N~l-~~l~~--l~~l~~L~~L~Ls~N~l~~------------------l~~l~~l~~L~~L~Ls~N~l~~---------- 145 (605)
T 1m9s_A 97 NKI-KDLSS--LKDLKKLKSLSLEHNGISD------------------INGLVHLPQLESLYLGNNKITD---------- 145 (605)
T ss_dssp SCC-CCCTT--STTCTTCCEEECTTSCCCC------------------CGGGGGCTTCSEEECCSSCCCC----------
T ss_pred CCC-CCChh--hccCCCCCEEEecCCCCCC------------------CccccCCCccCEEECCCCccCC----------
Confidence 644 44443 6666666666666665431 1234455555555554432211
Q ss_pred ccceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCchhhhc
Q 046470 684 VSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLTWLVFV 763 (888)
Q Consensus 684 ~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l 763 (888)
. ..+..+++|+.|++++|.+..+.+ + ..+++|+.|+|++| .+..++.+..+
T Consensus 146 ----------------l--~~l~~l~~L~~L~Ls~N~l~~~~~--l--------~~l~~L~~L~Ls~N-~i~~l~~l~~l 196 (605)
T 1m9s_A 146 ----------------I--TVLSRLTKLDTLSLEDNQISDIVP--L--------AGLTKLQNLYLSKN-HISDLRALAGL 196 (605)
T ss_dssp ----------------C--GGGGSCTTCSEEECCSSCCCCCGG--G--------TTCTTCCEEECCSS-CCCBCGGGTTC
T ss_pred ----------------c--hhhcccCCCCEEECcCCcCCCchh--h--------ccCCCCCEEECcCC-CCCCChHHccC
Confidence 1 124556667777777766654422 1 24667777777776 45556666677
Q ss_pred cCcceEeeeccc
Q 046470 764 QNLKELEISRCH 775 (888)
Q Consensus 764 ~~L~~L~L~~c~ 775 (888)
++|+.|+|++|.
T Consensus 197 ~~L~~L~L~~N~ 208 (605)
T 1m9s_A 197 KNLDVLELFSQE 208 (605)
T ss_dssp TTCSEEECCSEE
T ss_pred CCCCEEEccCCc
Confidence 777777777654
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=6.4e-16 Score=165.31 Aligned_cols=205 Identities=13% Similarity=0.061 Sum_probs=114.3
Q ss_pred CCcccEEEcCCCCCcc-cChhh--hcccCCCEEeccCCccccc-C----cccccCCccceeccccccccCCccccccCCC
Q 046470 547 MSSLRVLSLGSNALSK-LPSGI--SSLVSLHHLDLSWTEITGL-P----QELKALEKLRYLNLEHAYMLSIIPHQLISGF 618 (888)
Q Consensus 547 l~~L~~L~Ls~~~i~~-lp~~i--~~L~~L~~L~L~~~~i~~L-p----~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L 618 (888)
+++|++|++++|.++. .|..+ +.+.+|++|++++|.++.. | ..+..+++|++|++++|.+ ..+|...++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccC
Confidence 4557777777777663 35555 6677777777777766652 2 2344567777777777765 33443336677
Q ss_pred CCCcEEeccCCCCCCcccccccCcccccchhhHH---HHhhcCCCCceEEEEEechhhHHhhhcCCccccceEEEEEeec
Q 046470 619 SKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLM---KELLGLKHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQC 695 (888)
Q Consensus 619 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~ 695 (888)
++|++|++++|.... ...+ ..+..+++|+.|+++.+....+....
T Consensus 169 ~~L~~L~Ls~N~l~~---------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----------------- 216 (310)
T 4glp_A 169 PALTSLDLSDNPGLG---------------ERGLMAALCPHKFPAIQNLALRNTGMETPTGVC----------------- 216 (310)
T ss_dssp TTCCEEECCSCTTCH---------------HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-----------------
T ss_pred CCCCEEECCCCCCcc---------------chhhhHHHhhhcCCCCCEEECCCCCCCchHHHH-----------------
Confidence 777777777665431 0011 11245666666666655432221110
Q ss_pred CCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCchhhhccCcceEeeeccc
Q 046470 696 ECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLTWLVFVQNLKELEISRCH 775 (888)
Q Consensus 696 ~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~ 775 (888)
...+..+++|++|++++|.+....+..+.. ...+++|++|+|++| .++.+|.-. .++|+.|+|++|.
T Consensus 217 ------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 217 ------AALAAAGVQPHSLDLSHNSLRATVNPSAPR-----CMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNR 283 (310)
T ss_dssp ------HHHHHHTCCCSSEECTTSCCCCCCCSCCSS-----CCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCC
T ss_pred ------HHHHhcCCCCCEEECCCCCCCccchhhHHh-----ccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCc
Confidence 001345567777777777766543332220 011357777777777 344544211 2677777777743
Q ss_pred ccchhcccccccccccccCccCccccccceeeccccc
Q 046470 776 AVEDIISVDKLRDISEIIGSEHNFFAQLEALNIFNNV 812 (888)
Q Consensus 776 ~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~ 812 (888)
++.++ ....+|+|+.|+|++++
T Consensus 284 -l~~~~--------------~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 284 -LNRAP--------------QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp -CCSCC--------------CTTSCCCCSCEECSSTT
T ss_pred -CCCCc--------------hhhhCCCccEEECcCCC
Confidence 54442 23456777777777764
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=2.1e-14 Score=160.38 Aligned_cols=296 Identities=11% Similarity=0.066 Sum_probs=177.3
Q ss_pred CcccchHHHHHHHHHHh-hcC--C--CCceEEEE--EcCCCCcHHHHHHHHHhccccc--cCCCC-EEEEEEec------
Q 046470 155 HTVVGQELLLYRVWKCI-TDQ--D--KNRGIIGL--YGIGGVGKTTLLTQVNNNFCHE--QHHFD-VVIWAAVS------ 218 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L-~~~--~--~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~~--~~~f~-~~~wv~~~------ 218 (888)
..++||+.+++++.+++ ... + ...+.+.| +|++|+||||||+.+++..... ...|+ .++|+.+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999999998 431 1 23456667 9999999999999999876211 01222 35777753
Q ss_pred chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCcc--------chhhhCCCCCCC---C--CCc
Q 046470 219 TLQDDIGKRIGFSENWWKKKSPEEKAVDISSILS--RKEFVLLLDDIWKPI--------NLKDMGVPLQNL---N--AGS 283 (888)
Q Consensus 219 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~l~~~l~~~---~--~gs 283 (888)
.++..++.+++..... ...+..++...+.+.+. +++++|||||+|... .+..+...+... + ...
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 6677788877654210 12345566677777775 679999999998632 222222222111 2 344
Q ss_pred EEEEEecchhhhh-----------ccCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhC------CC
Q 046470 284 KIVLTTRSVDVCD-----------QMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECG------GL 346 (888)
Q Consensus 284 ~iivTtR~~~v~~-----------~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------g~ 346 (888)
.||+||+..++.. .... .+.+.+|+.++++++|.+.+..... ...--.+....|++.|+ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~-~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGF-KLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSE-EEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCC-eeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCc
Confidence 5787887654321 1221 4899999999999999876543211 11112678889999999 99
Q ss_pred ccHHHHHHHHh-c----cCC---ChhHHHHHHHHHHhcccccCCchHHH-HhhhhhccccchHHHHHHHhhhccCC--CC
Q 046470 347 PLALKTVGRAM-K----SRS---NIGDWKRAIKKIRTSASKFSGMEEKV-FSRLKFSYDSLSDELRSCLLYCCLYP--ED 415 (888)
Q Consensus 347 Plai~~~~~~l-~----~~~---~~~~w~~~~~~l~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~cfl~~s~fp--~~ 415 (888)
|..+..+.... . ... +.+.+..+.... . ...+.-++..||.+.+.++..++.+. .+
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~-------------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN-------------EAASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-------------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 97665554321 1 111 222232222210 1 23445577889999999998888653 23
Q ss_pred ccccHHHHHHHHH--H---cCCCc-CcchhHHHHHHHHHhcccccc-----CCcchhhhhHH
Q 046470 416 YKISKRELIDYWI--S---EGFVD-DFDDGWEFINDLLHACLLEEE-----GDDHVKMHDMI 466 (888)
Q Consensus 416 ~~i~~~~li~~w~--a---~g~~~-~~~~~~~~l~~L~~~~ll~~~-----~~~~~~mHdlv 466 (888)
..++..++...+. + .|.-. .......++++|...+++... ..+.|++|++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 3455555554442 2 12211 112367889999999999764 23345555544
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=2.1e-15 Score=159.37 Aligned_cols=129 Identities=23% Similarity=0.323 Sum_probs=102.1
Q ss_pred cccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEE
Q 046470 497 AVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHL 576 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 576 (888)
....+++++.|++++|.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++|.++.+| .++.+++|++|
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSL 117 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEE
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh-hhccCCCCCEE
Confidence 345567888888888888888777788888888888888877766 778888888888888888766 48888888888
Q ss_pred eccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 577 DLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 577 ~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
++++|.++.++ .+..+++|++|++++|.+ ..++. ++++++|++|++++|...
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDITV--LSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCcC-Ccchh--hccCCCCCEEEccCCccc
Confidence 88888888874 577888888888888865 44543 778888888888877664
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=4e-16 Score=169.22 Aligned_cols=218 Identities=18% Similarity=0.165 Sum_probs=131.8
Q ss_pred ceEEEEecCCCccCCCCCCC--CchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcc--cChhhhcccCCCEEecc
Q 046470 504 AKRISLRGNRFDSLSEIPTS--PRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSK--LPSGISSLVSLHHLDLS 579 (888)
Q Consensus 504 lr~L~l~~n~~~~l~~~~~~--~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~ 579 (888)
.++++++++.+.. ..+..+ ++++.|++.+|.+...++. +..+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4455666555431 112222 5666777777776666555 4467788888888887763 66677778888888888
Q ss_pred CCcccc-cCcccccCCccceeccccccccC--CccccccCCCCCCcEEeccCC-CCCCcccccccCcccccchhhHHHHh
Q 046470 580 WTEITG-LPQELKALEKLRYLNLEHAYMLS--IIPHQLISGFSKLEVLRLLGC-GSNCVTVTEEEGNVLCDDAGLLMKEL 655 (888)
Q Consensus 580 ~~~i~~-Lp~~i~~L~~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L 655 (888)
+|.++. .|..+..+++|++|++++|..+. .+|.. +.++++|++|++++| ... .......+
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~---------------~~~~~~~~ 190 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFT---------------EKHVQVAV 190 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCC---------------HHHHHHHH
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcC---------------hHHHHHHH
Confidence 887764 56677778888888888873323 24433 667788888888877 443 22234456
Q ss_pred hcCC-CCceEEEEEech----hhHHhhhcCCccccceEEEEEeecCCCccccccccccCCcceEEeecCC-cceeeecCC
Q 046470 656 LGLK-HLNFLSWSFRSS----LAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSD-LEEMRIDGP 729 (888)
Q Consensus 656 ~~L~-~L~~L~l~~~~~----~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~-l~~l~~~~~ 729 (888)
..++ +|+.|+++.+.. ..+.. .+..+++|++|++++|. +....+..+
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~---------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLST---------------------------LVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHH---------------------------HHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHH---------------------------HHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 6677 777777765531 11111 13445677777777655 332222222
Q ss_pred ccccccccccCCCccEEEEecCCCCCC--CchhhhccCcceEeeecc
Q 046470 730 EEVKKLFQSGFRSLSIVSVENCEKMKD--LTWLVFVQNLKELEISRC 774 (888)
Q Consensus 730 ~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c 774 (888)
..+++|+.|+|++|..+.. +..+..+++|+.|+|++|
T Consensus 244 --------~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 244 --------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp --------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred --------hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 2457777777777753322 224566777777777776
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=1.4e-14 Score=149.71 Aligned_cols=128 Identities=24% Similarity=0.346 Sum_probs=98.6
Q ss_pred cceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEEeccCC
Q 046470 503 GAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDLSWT 581 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~ 581 (888)
..+.++++++.+..+|... .++++.|++++|.+..+++..|.++++|++|+|++|.++.++ ..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4567888888888777522 267888888888888888777888888888888888888764 44788888888888888
Q ss_pred cccccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 582 EITGLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 582 ~i~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
.++.+|. .+..+++|++|++++|.+ ..+|...+.++++|++|++++|...
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcCC
Confidence 8888754 467888888888888865 5666665678888888888876543
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=6.4e-16 Score=181.70 Aligned_cols=128 Identities=24% Similarity=0.282 Sum_probs=69.0
Q ss_pred ccccceEEEEecCCCcc-----CCCC-CCCCchhhhhhccCCcccccc----hHHhcCCcccEEEcCCC-CCcccChhhh
Q 046470 500 EWEGAKRISLRGNRFDS-----LSEI-PTSPRLITLLLIANSIDEITD----GFFQSMSSLRVLSLGSN-ALSKLPSGIS 568 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~-----l~~~-~~~~~Lr~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~~-~i~~lp~~i~ 568 (888)
.+++++.|++++|.+.. ++.+ ..+++|++|++++|. ..+.. ..+..+++|++|++++| .++.+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 45677777777776443 2222 356777777777775 22222 22345677778887777 5556666677
Q ss_pred cccCCCEEeccCCc-------ccccCcccccCCcccee-ccccccccCCccccccCCCCCCcEEeccCCC
Q 046470 569 SLVSLHHLDLSWTE-------ITGLPQELKALEKLRYL-NLEHAYMLSIIPHQLISGFSKLEVLRLLGCG 630 (888)
Q Consensus 569 ~L~~L~~L~L~~~~-------i~~Lp~~i~~L~~L~~L-~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 630 (888)
.+++|++|+++++. +..++..+.++++|+.| .+.+... ..+|.. +..+++|++|++++|.
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~-~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAV-YSVCSRLTTLNLSYAT 300 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGG-HHHHTTCCEEECTTCC
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHH-HHhhCCCCEEEccCCC
Confidence 77777777754432 22233344444444444 2222211 222221 2345566666666555
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=7.3e-16 Score=170.54 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=43.3
Q ss_pred CCCchhhhhhccCCcccccchH----HhcCCcccEEEcCCCCCc----ccChhh-------hcccCCCEEeccCCcccc-
Q 046470 522 TSPRLITLLLIANSIDEITDGF----FQSMSSLRVLSLGSNALS----KLPSGI-------SSLVSLHHLDLSWTEITG- 585 (888)
Q Consensus 522 ~~~~Lr~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~~~i~----~lp~~i-------~~L~~L~~L~L~~~~i~~- 585 (888)
.+++|++|++++|.+....... |..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 4455555666555544332221 335555666666555333 223332 455555666665555554
Q ss_pred ----cCcccccCCccceeccccccc
Q 046470 586 ----LPQELKALEKLRYLNLEHAYM 606 (888)
Q Consensus 586 ----Lp~~i~~L~~L~~L~l~~~~~ 606 (888)
+|..+.++++|++|++++|.+
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCC
Confidence 455555555555555555544
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=4.9e-15 Score=146.83 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=130.7
Q ss_pred cccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcc-cChhhhcccCCCEEe
Q 046470 499 EEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSK-LPSGISSLVSLHHLD 577 (888)
Q Consensus 499 ~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~L~ 577 (888)
..+++++.|++++|.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 567889999999999999888889999999999999877665 38899999999999999985 688899999999999
Q ss_pred ccCCcccc-cCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhh
Q 046470 578 LSWTEITG-LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELL 656 (888)
Q Consensus 578 L~~~~i~~-Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 656 (888)
+++|.++. .|..+..+++|++|++++|..+..+|. +.++++|++|++++|..... ..+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~------------------~~l~ 178 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY------------------RGIE 178 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC------------------TTGG
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh------------------HHhc
Confidence 99999987 678899999999999999975677874 89999999999999877521 2577
Q ss_pred cCCCCceEEEEEech
Q 046470 657 GLKHLNFLSWSFRSS 671 (888)
Q Consensus 657 ~L~~L~~L~l~~~~~ 671 (888)
.+++|+.|+++.+..
T Consensus 179 ~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTI 193 (197)
T ss_dssp GCSSCCEEEECBC--
T ss_pred cCCCCCEEEeeCccc
Confidence 889999999987664
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=7.9e-16 Score=170.23 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=68.0
Q ss_pred ccccceEEEEecCCCccC------CCCCCCCchhhhhhccCCcccc----cchH------HhcCCcccEEEcCCCCCcc-
Q 046470 500 EWEGAKRISLRGNRFDSL------SEIPTSPRLITLLLIANSIDEI----TDGF------FQSMSSLRVLSLGSNALSK- 562 (888)
Q Consensus 500 ~~~~lr~L~l~~n~~~~l------~~~~~~~~Lr~L~l~~n~l~~~----~~~~------~~~l~~L~~L~Ls~~~i~~- 562 (888)
.+++++.|++++|.+... ..+..+++|++|++++|.+..+ |..+ |..+++|++|+|++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 345566666666655432 1244566666666666543322 2121 2456666666666666654
Q ss_pred ----cChhhhcccCCCEEeccCCcccc-----cCcccccC---------Cccceecccccccc-CCccc--cccCCCCCC
Q 046470 563 ----LPSGISSLVSLHHLDLSWTEITG-----LPQELKAL---------EKLRYLNLEHAYML-SIIPH--QLISGFSKL 621 (888)
Q Consensus 563 ----lp~~i~~L~~L~~L~L~~~~i~~-----Lp~~i~~L---------~~L~~L~l~~~~~l-~~lp~--~~i~~L~~L 621 (888)
+|..+..+++|++|+|++|.++. ++..+..+ ++|++|++++|.+. ..+|. ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 45566666666666666666543 22233333 55666666655442 12222 223345555
Q ss_pred cEEeccCCCC
Q 046470 622 EVLRLLGCGS 631 (888)
Q Consensus 622 ~~L~l~~~~~ 631 (888)
++|++++|.+
T Consensus 190 ~~L~L~~n~l 199 (386)
T 2ca6_A 190 HTVKMVQNGI 199 (386)
T ss_dssp CEEECCSSCC
T ss_pred CEEECcCCCC
Confidence 5555555543
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=4e-14 Score=146.25 Aligned_cols=153 Identities=23% Similarity=0.328 Sum_probs=131.7
Q ss_pred ccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEEec
Q 046470 502 EGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDL 578 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L 578 (888)
..++.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++|.++.+| ..+..+++|++|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 589999999999988764 788999999999999999999888999999999999999999886 45789999999999
Q ss_pred cCCcccccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhc
Q 046470 579 SWTEITGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLG 657 (888)
Q Consensus 579 ~~~~i~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 657 (888)
++|.++.+|.. +..+++|++|++++|.+ ..+|...++++++|++|++++|..... ....+..
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------~~~~~~~ 177 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSV----------------PHGAFDR 177 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC----------------CTTTTTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCcc----------------CHHHHhC
Confidence 99999998765 68999999999999976 677766689999999999999977532 1234667
Q ss_pred CCCCceEEEEEech
Q 046470 658 LKHLNFLSWSFRSS 671 (888)
Q Consensus 658 L~~L~~L~l~~~~~ 671 (888)
+++|+.|+++.|..
T Consensus 178 l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 178 LGKLQTITLFGNQF 191 (251)
T ss_dssp CTTCCEEECCSCCB
T ss_pred CCCCCEEEeeCCce
Confidence 88888888887654
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=1.1e-14 Score=168.90 Aligned_cols=150 Identities=24% Similarity=0.315 Sum_probs=110.4
Q ss_pred cccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEE
Q 046470 497 AVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHL 576 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 576 (888)
....+.+++.|++++|.+..++.+..+++|+.|+|++|.+..+++ +..+++|++|+|++|.++.+| .++.+++|++|
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 345567788888888888877777778888888888888777766 778888888888888887766 67788888888
Q ss_pred eccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhh
Q 046470 577 DLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELL 656 (888)
Q Consensus 577 ~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 656 (888)
+|++|.++.+| .+..+++|+.|+|++|.+ ..++. ++.|++|++|++++|.+... . .+.
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l~~--l~~l~~L~~L~Ls~N~l~~~----------------~--~l~ 172 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDITV--LSRLTKLDTLSLEDNQISDI----------------V--PLA 172 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG--GGSCTTCSEEECCSSCCCCC----------------G--GGT
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCcc-CCchh--hcccCCCCEEECcCCcCCCc----------------h--hhc
Confidence 88888887764 477888888888888865 44543 77888888888887766421 1 156
Q ss_pred cCCCCceEEEEEech
Q 046470 657 GLKHLNFLSWSFRSS 671 (888)
Q Consensus 657 ~L~~L~~L~l~~~~~ 671 (888)
.+++|+.|+++.|..
T Consensus 173 ~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHI 187 (605)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred cCCCCCEEECcCCCC
Confidence 666777776665543
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=1e-14 Score=159.67 Aligned_cols=258 Identities=15% Similarity=0.103 Sum_probs=145.3
Q ss_pred EEEecCCCccC-CCC-CCCCchhhhhhccCCcccccc----hHHhcCC-cccEEEcCCCCCccc-Chhhhcc-----cCC
Q 046470 507 ISLRGNRFDSL-SEI-PTSPRLITLLLIANSIDEITD----GFFQSMS-SLRVLSLGSNALSKL-PSGISSL-----VSL 573 (888)
Q Consensus 507 L~l~~n~~~~l-~~~-~~~~~Lr~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~~~i~~l-p~~i~~L-----~~L 573 (888)
+.++.|.+... +.+ ...++|++|++++|.++..+. ..|..++ +|++|+|++|.++.. +..+..+ .+|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34555555532 222 333458888888888777766 5567777 788888888877755 5555554 788
Q ss_pred CEEeccCCcccccCcc-----cccC-CccceeccccccccCCcccc---ccCC-CCCCcEEeccCCCCCCcccccccCcc
Q 046470 574 HHLDLSWTEITGLPQE-----LKAL-EKLRYLNLEHAYMLSIIPHQ---LISG-FSKLEVLRLLGCGSNCVTVTEEEGNV 643 (888)
Q Consensus 574 ~~L~L~~~~i~~Lp~~-----i~~L-~~L~~L~l~~~~~l~~lp~~---~i~~-L~~L~~L~l~~~~~~~~~~~~~~~~~ 643 (888)
++|+|++|.++..+.. +..+ ++|++|++++|.+....+.. .+.. .++|++|++++|.....
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--------- 153 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK--------- 153 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS---------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH---------
Confidence 8888888877764332 4444 77888888888653332221 1233 35788888887765421
Q ss_pred cccchhhHHHHhhcCC-CCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccc----ccccc-CCcceEEee
Q 046470 644 LCDDAGLLMKELLGLK-HLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVL----HLAYM-ENLQELHLE 717 (888)
Q Consensus 644 ~~~~~~~~~~~L~~L~-~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l----~l~~l-~~L~~L~l~ 717 (888)
........+..++ +|+.|+++.+.... .... .+..+ ++|++|+++
T Consensus 154 ---~~~~l~~~l~~~~~~L~~L~Ls~n~l~~--------------------------~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 154 ---SSDELIQILAAIPANVNSLNLRGNNLAS--------------------------KNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp ---CHHHHHHHHHTSCTTCCEEECTTSCGGG--------------------------SCHHHHHHHHHTSCTTCCEEECT
T ss_pred ---HHHHHHHHHhcCCccccEeeecCCCCch--------------------------hhHHHHHHHHHhCCCCCCEEECC
Confidence 0112233444444 66666666544322 1111 13334 478888888
Q ss_pred cCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc------hhhhccCcceEeeecccccchhccccccccccc
Q 046470 718 DSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT------WLVFVQNLKELEISRCHAVEDIISVDKLRDISE 791 (888)
Q Consensus 718 ~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~------~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~ 791 (888)
+|.+.......+.. ......++|+.|+|++| .+...+ .+..+++|+.|+|++|. +..+... ....
T Consensus 205 ~N~i~~~~~~~l~~---~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~----~~~~ 275 (362)
T 3goz_A 205 ANLLGLKSYAELAY---IFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKE----QCKA 275 (362)
T ss_dssp TSCGGGSCHHHHHH---HHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHH----HHHH
T ss_pred CCCCChhHHHHHHH---HHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHH----HHHH
Confidence 87776422111110 00011357888888887 354432 23566788888888865 2222110 0000
Q ss_pred ccCccCccccccceeeccccc
Q 046470 792 IIGSEHNFFAQLEALNIFNNV 812 (888)
Q Consensus 792 ~~~~~~~~~p~L~~L~L~~~~ 812 (888)
+. .....+++|+.|++++++
T Consensus 276 l~-~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 276 LG-AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HH-TTSTTCCEEEEECTTSCB
T ss_pred HH-HHhccCCceEEEecCCCc
Confidence 00 245567778888887764
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=151.47 Aligned_cols=108 Identities=18% Similarity=0.113 Sum_probs=50.9
Q ss_pred CchhhhhhccCCcccccchHH--hcCCcccEEEcCCCCCccc-C----hhhhcccCCCEEeccCCcccccC-cccccCCc
Q 046470 524 PRLITLLLIANSIDEITDGFF--QSMSSLRVLSLGSNALSKL-P----SGISSLVSLHHLDLSWTEITGLP-QELKALEK 595 (888)
Q Consensus 524 ~~Lr~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~~~i~~l-p----~~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~ 595 (888)
++|++|++++|.+....+..+ ..+++|++|+|++|.++.. | ..+..+++|++|++++|.++.+| ..++++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555444333323 4555555555555555431 1 22334555555555555555432 34555555
Q ss_pred cceeccccccccCC--cc-ccccCCCCCCcEEeccCCCC
Q 046470 596 LRYLNLEHAYMLSI--IP-HQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 596 L~~L~l~~~~~l~~--lp-~~~i~~L~~L~~L~l~~~~~ 631 (888)
|++|++++|++... ++ ...++.+++|++|++++|..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 55555555543221 11 11124455555555555544
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=1.1e-13 Score=140.40 Aligned_cols=131 Identities=31% Similarity=0.477 Sum_probs=111.5
Q ss_pred ccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEec
Q 046470 502 EGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDL 578 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L 578 (888)
.+++.|++++|.+..++. +..+++|++|++++|.+..++...|..+++|++|+|++|.|+.+|.. +..+.+|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 688899999998887743 67888999999999999888888888899999999999999888654 678999999999
Q ss_pred cCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCC
Q 046470 579 SWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 579 ~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
++|.|+.+|..+..+++|++|++++|.+ ..+|...+..+++|++|++.+|...+
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999999998899999999999999865 66776668889999999999887664
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=6e-14 Score=145.65 Aligned_cols=152 Identities=24% Similarity=0.290 Sum_probs=129.6
Q ss_pred CCcccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCC
Q 046470 495 APAVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLH 574 (888)
Q Consensus 495 ~~~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~ 574 (888)
++.+..+++++.|++++|.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++|.++.+|.... .+|+
T Consensus 34 ~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 34 LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp EECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred ccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 34566778999999999999999888889999999999999998887 8899999999999999998875443 9999
Q ss_pred EEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHH
Q 046470 575 HLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKE 654 (888)
Q Consensus 575 ~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (888)
+|++++|.++.+| .+.++++|++|++++|.+ ..+|. ++.+++|++|++++|.... ...
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~~--l~~l~~L~~L~L~~N~i~~------------------~~~ 167 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIVM--LGFLSKLEVLDLHGNEITN------------------TGG 167 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCGG--GGGCTTCCEEECTTSCCCB------------------CTT
T ss_pred EEEccCCccCCCh-hhcCcccccEEECCCCcC-CCChH--HccCCCCCEEECCCCcCcc------------------hHH
Confidence 9999999999986 589999999999999976 66664 8899999999999987752 145
Q ss_pred hhcCCCCceEEEEEechh
Q 046470 655 LLGLKHLNFLSWSFRSSL 672 (888)
Q Consensus 655 L~~L~~L~~L~l~~~~~~ 672 (888)
+..+++|+.|+++.+...
T Consensus 168 l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp STTCCCCCEEEEEEEEEE
T ss_pred hccCCCCCEEeCCCCccc
Confidence 677888999999877643
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=2.6e-15 Score=176.47 Aligned_cols=298 Identities=16% Similarity=0.133 Sum_probs=182.4
Q ss_pred ccccceEEEEecCC--Cc--cCCC-CCCCCchhhhhhccCC-cccccchHHhcCCcccEEEcCCC-------CCcccChh
Q 046470 500 EWEGAKRISLRGNR--FD--SLSE-IPTSPRLITLLLIANS-IDEITDGFFQSMSSLRVLSLGSN-------ALSKLPSG 566 (888)
Q Consensus 500 ~~~~lr~L~l~~n~--~~--~l~~-~~~~~~Lr~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~~-------~i~~lp~~ 566 (888)
.+++++.|+++++. +. .+.. ...+++|++|++++|. +.. .+..+..+++|+.|+++.+ .+..++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 56789999999886 21 1111 2357999999999984 555 3455889999999996655 34466677
Q ss_pred hhcccCCCEE-eccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccc
Q 046470 567 ISSLVSLHHL-DLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLC 645 (888)
Q Consensus 567 i~~L~~L~~L-~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 645 (888)
++++++|+.| .+.+.....+|..+..+++|++|++++|.+.......++.++++|++|++.+| ..
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~------------- 326 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE------------- 326 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH-------------
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC-------------
Confidence 8889999988 55555545577777788899999999887432222333568899999999876 21
Q ss_pred cchhhHHHH-hhcCCCCceEEEEEe---------ch--hhHHhhhcCCccccceEEEEEeecCCCccccccc-cccCCcc
Q 046470 646 DDAGLLMKE-LLGLKHLNFLSWSFR---------SS--LAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHL-AYMENLQ 712 (888)
Q Consensus 646 ~~~~~~~~~-L~~L~~L~~L~l~~~---------~~--~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l-~~l~~L~ 712 (888)
...+.. ...+++|+.|++..+ .. ..+..+. ..++.|+.|.+..+.........+ ..+++|+
T Consensus 327 ---~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~---~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 327 ---DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS---MGCPKLESVLYFCRQMTNAALITIARNRPNMT 400 (594)
T ss_dssp ---HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH---HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC
T ss_pred ---HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH---HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc
Confidence 122222 335788888887431 11 1111111 123467777555444332222223 3578889
Q ss_pred eEEee--c----CCcceeeec-CCccccccccccCCCccEEEEecCCCCCC--Cchhhh-ccCcceEeeecccccchhcc
Q 046470 713 ELHLE--D----SDLEEMRID-GPEEVKKLFQSGFRSLSIVSVENCEKMKD--LTWLVF-VQNLKELEISRCHAVEDIIS 782 (888)
Q Consensus 713 ~L~l~--~----~~l~~l~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~-l~~L~~L~L~~c~~l~~l~~ 782 (888)
.|+++ + +.++..+.+ .+. .....+++|+.|+|++ .++. ++.+.. +++|+.|+|++|. +++...
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~~~~----~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~ 473 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDIGFG----AIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM 473 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHHHHH----HHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH
T ss_pred eeEeecccCCCcccccCCchhhHHH----HHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHH
Confidence 99888 3 333321110 000 0013577888888866 2333 233444 7889999998876 433211
Q ss_pred cccccccccccCccCccccccceeeccccccccccCC--CCCCCCCccEEEecCCCC
Q 046470 783 VDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYP--NPLPFPKLKKIQIYSCPE 837 (888)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~ 837 (888)
. .....+|+|+.|+|++|+. ..... ....+|+|+.|++++|+.
T Consensus 474 ~-----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 H-----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp H-----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred H-----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 0 0124578899999988864 32211 223478899999998864
No 110
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.47 E-value=2.1e-13 Score=119.71 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHHHHHHHH
Q 046470 10 PADLFDRTLNCVGEQAKYIWGLEKNLGGLETEFHKLTRTRDDLRTRVEVDEQAPRTRRTNQVVGWLEDVQKLETEFTELQ 89 (888)
Q Consensus 10 ~~~~~~~l~~~~~~e~~~~~~~~~~i~~l~~el~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~~Wl~~v~~~~~~~ed~~ 89 (888)
...+++||.+++.+|+.++.+|+++++.|++||+.|+++|.| |+.+.....++.++.|+++||+++||+||++
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999998 4444101457899999999999999999999
Q ss_pred HHHHhhhc
Q 046470 90 QLRAQEMD 97 (888)
Q Consensus 90 d~~~~~~~ 97 (888)
|+|.+...
T Consensus 76 D~f~~~~~ 83 (115)
T 3qfl_A 76 DKFLVQVD 83 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998765
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=1.1e-13 Score=143.75 Aligned_cols=104 Identities=21% Similarity=0.281 Sum_probs=85.2
Q ss_pred CCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceec
Q 046470 521 PTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLN 600 (888)
Q Consensus 521 ~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~ 600 (888)
..+.++..+.+.++.++.++. +..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|. +.++++|++|+
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEEC--HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHHhcCCCcccccc--hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 345677888888888887773 788899999999999998888 78889999999999999988877 88899999999
Q ss_pred cccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 601 LEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 601 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
+++|.+ ..+|. +.. ++|++|++++|...
T Consensus 92 L~~N~l-~~l~~--~~~-~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 92 VNRNRL-KNLNG--IPS-ACLSRLFLDNNELR 119 (263)
T ss_dssp CCSSCC-SCCTT--CCC-SSCCEEECCSSCCS
T ss_pred CCCCcc-CCcCc--ccc-CcccEEEccCCccC
Confidence 999865 56665 344 88899988887654
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=2.1e-13 Score=137.38 Aligned_cols=131 Identities=25% Similarity=0.339 Sum_probs=90.4
Q ss_pred ccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEec
Q 046470 502 EGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDL 578 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L 578 (888)
.+++.|++++|.+..++ .+..+++|++|++++|.++.+.+..|.++++|++|+|++|.|+.+|.. +..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 46777777777776665 356667777777777777777666677777777777777777777654 466777777777
Q ss_pred cCCccccc-CcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCC
Q 046470 579 SWTEITGL-PQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 579 ~~~~i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
++|.|+.+ |..+..+++|++|++++|.+ ..+|.+.+..+++|++|++.+|...+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcC-CEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77777775 45577777777777777755 44554446677777777777766543
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=7.5e-15 Score=160.69 Aligned_cols=237 Identities=16% Similarity=0.199 Sum_probs=161.2
Q ss_pred ccceEEEEecCCCccCCC------CCCCC-chhhhhhccCCcccccchHHhcC-----CcccEEEcCCCCCcccC-hh--
Q 046470 502 EGAKRISLRGNRFDSLSE------IPTSP-RLITLLLIANSIDEITDGFFQSM-----SSLRVLSLGSNALSKLP-SG-- 566 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~------~~~~~-~Lr~L~l~~n~l~~~~~~~~~~l-----~~L~~L~Ls~~~i~~lp-~~-- 566 (888)
++++.|++++|.+...+. +..++ +|++|++++|.++......|..+ ++|++|+|++|.++..+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999987642 45677 89999999999988876666665 99999999999998653 33
Q ss_pred --hhcc-cCCCEEeccCCcccccCc-c----ccc-CCccceeccccccccC----CccccccCCCC-CCcEEeccCCCCC
Q 046470 567 --ISSL-VSLHHLDLSWTEITGLPQ-E----LKA-LEKLRYLNLEHAYMLS----IIPHQLISGFS-KLEVLRLLGCGSN 632 (888)
Q Consensus 567 --i~~L-~~L~~L~L~~~~i~~Lp~-~----i~~-L~~L~~L~l~~~~~l~----~lp~~~i~~L~-~L~~L~l~~~~~~ 632 (888)
+..+ .+|++|++++|.++..+. . +.. .++|++|++++|.+.. .++.. +..++ +|++|++++|...
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-HhcCCccccEeeecCCCCc
Confidence 4444 899999999999988654 2 344 3699999999997753 23332 45555 9999999999775
Q ss_pred CcccccccCcccccchhhHHHHhhcC-CCCceEEEEEechhhHHhhhcCCccccceEEEEEeecCCCccccccccc-cCC
Q 046470 633 CVTVTEEEGNVLCDDAGLLMKELLGL-KHLNFLSWSFRSSLAVQKFFKYPKLVSITQSVVVYQCECPLFNVLHLAY-MEN 710 (888)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~L~~L-~~L~~L~l~~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~l~l~~-l~~ 710 (888)
.. ........+..+ ++|+.|+++.|....... . .-...+.. .++
T Consensus 181 ~~------------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-~---------------------~l~~~l~~~~~~ 226 (362)
T 3goz_A 181 SK------------NCAELAKFLASIPASVTSLDLSANLLGLKSY-A---------------------ELAYIFSSIPNH 226 (362)
T ss_dssp GS------------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-H---------------------HHHHHHHHSCTT
T ss_pred hh------------hHHHHHHHHHhCCCCCCEEECCCCCCChhHH-H---------------------HHHHHHhcCCCC
Confidence 32 011223345566 488888887665432000 0 00001223 358
Q ss_pred cceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc---------hhhhccCcceEeeecccccch
Q 046470 711 LQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT---------WLVFVQNLKELEISRCHAVED 779 (888)
Q Consensus 711 L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~---------~l~~l~~L~~L~L~~c~~l~~ 779 (888)
|++|++++|.+....+..+. .....+++|+.|+|++|. +..+. .+..+++|+.|++++|. +.+
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~----~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~ 298 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLK----LLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHP 298 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHH----HTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCG
T ss_pred ceEEECcCCCCCcHHHHHHH----HHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc-CCC
Confidence 99999999887754332111 001257889999999984 22221 24567889999999865 443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=2e-13 Score=135.13 Aligned_cols=140 Identities=20% Similarity=0.279 Sum_probs=120.9
Q ss_pred CcccccCCcccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcc-cChhh
Q 046470 489 GFRLTEAPAVEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSK-LPSGI 567 (888)
Q Consensus 489 ~~~~~~~~~~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~-lp~~i 567 (888)
+......+.+..+++++.|++++|.+..++.+..+++|++|++++|.++...+..|..+++|++|++++|.++. .|..+
T Consensus 53 ~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l 132 (197)
T 4ezg_A 53 NINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132 (197)
T ss_dssp SSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHH
T ss_pred CCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHH
Confidence 33444556778889999999999999888889999999999999999987555558999999999999999995 68889
Q ss_pred hcccCCCEEeccCCc-ccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 568 SSLVSLHHLDLSWTE-ITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 568 ~~L~~L~~L~L~~~~-i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
+.+++|++|++++|. ++.+| .+..+++|++|++++|.+ ..++. +..+++|++|++.+|.+.
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCTT--GGGCSSCCEEEECBC---
T ss_pred hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChHH--hccCCCCCEEEeeCcccC
Confidence 999999999999997 88897 699999999999999976 56663 889999999999988653
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=1.1e-13 Score=139.45 Aligned_cols=148 Identities=22% Similarity=0.318 Sum_probs=124.9
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCcc
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTEI 583 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~i 583 (888)
+.++.+++.+..+|... .++|+.|++++|.++.+++..|..+++|++|+|++|.|+.+ |..+..+++|++|+|++|.|
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 46778888888887522 37899999999999999988899999999999999999987 78899999999999999999
Q ss_pred cccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCc
Q 046470 584 TGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLN 662 (888)
Q Consensus 584 ~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 662 (888)
+.+|.. +.++++|++|++++|.+ ..++...+..+++|++|++++|.+... ....+..+++|+
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------~~~~~~~l~~L~ 155 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTI----------------AKGTFSPLRAIQ 155 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC----------------CTTTTTTCTTCC
T ss_pred CccCHhHccCCCCCCEEECCCCCC-CEeCHHHcCCCCCCCEEECCCCcCCEE----------------CHHHHhCCCCCC
Confidence 999876 68999999999999977 555545589999999999999987632 123456788888
Q ss_pred eEEEEEec
Q 046470 663 FLSWSFRS 670 (888)
Q Consensus 663 ~L~l~~~~ 670 (888)
.|+++.|.
T Consensus 156 ~L~L~~N~ 163 (220)
T 2v9t_B 156 TMHLAQNP 163 (220)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 88887665
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=137.55 Aligned_cols=125 Identities=16% Similarity=0.313 Sum_probs=74.4
Q ss_pred EEEEecCCCccCCCCCCCCchhhhhhccCCccccc-chHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEEeccCCcc
Q 046470 506 RISLRGNRFDSLSEIPTSPRLITLLLIANSIDEIT-DGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHLDLSWTEI 583 (888)
Q Consensus 506 ~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~i 583 (888)
.+++++|.+..+|.. -.+.+++|++++|.++.++ ...|..+++|++|+|++|.|+.++. .++.+.+|++|+|++|.+
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 566666666655531 1234566666666666653 3445666666666666666666543 566666666666666666
Q ss_pred cccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 584 TGLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 584 ~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
+.+|. .+..+++|++|++++|.+ ..++...+.++++|++|++++|.+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CccCHhHhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECCCCcCC
Confidence 66543 366666666666666655 3332223666666666666666554
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=7.6e-13 Score=151.54 Aligned_cols=114 Identities=26% Similarity=0.391 Sum_probs=81.8
Q ss_pred cceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCc
Q 046470 503 GAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTE 582 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 582 (888)
+++.|++++|.+..+|... +++|++|++++|.++.+| ..+++|++|+|++|.|+.+|. ++. +|++|+|++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6788888888887776522 367788888888777766 236777888888887777776 554 78888888887
Q ss_pred ccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 583 ITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 583 i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
++.+|. .+++|++|++++|.+ ..+|. .+++|++|++++|.+.
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQL-TMLPE----LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCS
T ss_pred CCCCCC---cCccccEEeCCCCcc-CcCCC----cCCCcCEEECCCCCCC
Confidence 777776 577778888877765 44664 4567777777766543
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=5.4e-13 Score=152.73 Aligned_cols=181 Identities=18% Similarity=0.227 Sum_probs=98.5
Q ss_pred chhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceeccccc
Q 046470 525 RLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHA 604 (888)
Q Consensus 525 ~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~ 604 (888)
+|++|++++|.++.+|..+ +++|++|+|++|.|+.+| +.+++|++|++++|.|+.+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 5566666666666655543 255666666666666666 345666666666666666665 443 6666666666
Q ss_pred cccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhHHhhhcCCccc
Q 046470 605 YMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAVQKFFKYPKLV 684 (888)
Q Consensus 605 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 684 (888)
.+ ..+|. .+++|++|++++|.+... . . .+++|+.|++
T Consensus 131 ~l-~~lp~----~l~~L~~L~Ls~N~l~~l-------------p-----~--~l~~L~~L~L------------------ 167 (571)
T 3cvr_A 131 QL-TMLPE----LPALLEYINADNNQLTML-------------P-----E--LPTSLEVLSV------------------ 167 (571)
T ss_dssp CC-SCCCC----CCTTCCEEECCSSCCSCC-------------C-----C--CCTTCCEEEC------------------
T ss_pred cC-CCCCC----cCccccEEeCCCCccCcC-------------C-----C--cCCCcCEEEC------------------
Confidence 54 33554 456666666666554311 0 0 2333444443
Q ss_pred cceEEEEEeecCCCccccccccccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc-hhhhc
Q 046470 685 SITQSVVVYQCECPLFNVLHLAYMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT-WLVFV 763 (888)
Q Consensus 685 ~~L~~L~l~~~~~~~~~~l~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l 763 (888)
+++....... +. ++|+.|++++|.++.++. +.. .+ ....+.|+.|+|++| .++.+| .+..+
T Consensus 168 --------s~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L-~~~~~~L~~L~Ls~N-~l~~lp~~l~~l 229 (571)
T 3cvr_A 168 --------RNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RN-HHSEETEIFFRCREN-RITHIPENILSL 229 (571)
T ss_dssp --------CSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC-----------CCEEEECCSS-CCCCCCGGGGGS
T ss_pred --------CCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hh-hcccccceEEecCCC-cceecCHHHhcC
Confidence 3333222222 22 677788887777765432 210 00 001122377888777 455555 46667
Q ss_pred cCcceEeeeccc
Q 046470 764 QNLKELEISRCH 775 (888)
Q Consensus 764 ~~L~~L~L~~c~ 775 (888)
++|+.|+|++|+
T Consensus 230 ~~L~~L~L~~N~ 241 (571)
T 3cvr_A 230 DPTCTIILEDNP 241 (571)
T ss_dssp CTTEEEECCSSS
T ss_pred CCCCEEEeeCCc
Confidence 788888887765
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=4.8e-13 Score=133.79 Aligned_cols=131 Identities=24% Similarity=0.415 Sum_probs=108.6
Q ss_pred cccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEe
Q 046470 501 WEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLD 577 (888)
Q Consensus 501 ~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 577 (888)
.++++.|++++|.+..++. +..+++|++|++++|.++.++...|..+++|++|+|++|.++.+|.. ++.+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4578899999998887765 56788999999999988888888788899999999999988888654 68889999999
Q ss_pred ccCCcccccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 578 LSWTEITGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 578 L~~~~i~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
+++|.++.+|.. +.++++|++|++++|.+ ..+|...+..+++|++|++.+|...
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCee
Confidence 999988887664 68889999999999865 5666665788899999999887654
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=3.1e-13 Score=136.22 Aligned_cols=131 Identities=25% Similarity=0.358 Sum_probs=116.3
Q ss_pred ccceEEEEecCCCccCCC---CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEEe
Q 046470 502 EGAKRISLRGNRFDSLSE---IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHLD 577 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~---~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 577 (888)
..++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.++.+|. .++.+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 467899999999998743 6789999999999999999998889999999999999999998865 489999999999
Q ss_pred ccCCccccc-CcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCC
Q 046470 578 LSWTEITGL-PQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 578 L~~~~i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
|++|.|+.+ |..+..+++|++|++++|.+ ..+++..+..+++|++|++.+|...+
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCC-CCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcC-CEECHHHhcCCCCCCEEEecCcCCcC
Confidence 999999997 77899999999999999977 55543448999999999999998764
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=3.2e-13 Score=137.08 Aligned_cols=148 Identities=26% Similarity=0.320 Sum_probs=124.8
Q ss_pred ceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEeccCCc
Q 046470 504 AKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDLSWTE 582 (888)
Q Consensus 504 lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 582 (888)
.+.++.+++.+..+|.. -.++|++|++++|.++.+++..|..+++|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 34577888888888752 248999999999999999888899999999999999999999754 6899999999999999
Q ss_pred ccccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCC
Q 046470 583 ITGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHL 661 (888)
Q Consensus 583 i~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 661 (888)
|+.+|.. +..+++|++|++++|.+ ..+|.. +..+++|++|++++|.+... ....+..+++|
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~~----------------~~~~~~~l~~L 161 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKL-TELPRG-IERLTHLTHLALDQNQLKSI----------------PHGAFDRLSSL 161 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCC-CSCCTT-GGGCTTCSEEECCSSCCCCC----------------CTTTTTTCTTC
T ss_pred CCccChhHhCcchhhCeEeccCCcc-cccCcc-cccCCCCCEEECCCCcCCcc----------------CHHHHhCCCCC
Confidence 9998765 68999999999999976 688887 79999999999999877532 11346678888
Q ss_pred ceEEEEEec
Q 046470 662 NFLSWSFRS 670 (888)
Q Consensus 662 ~~L~l~~~~ 670 (888)
+.|++..|.
T Consensus 162 ~~L~l~~N~ 170 (229)
T 3e6j_A 162 THAYLFGNP 170 (229)
T ss_dssp CEEECTTSC
T ss_pred CEEEeeCCC
Confidence 888887654
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=2.7e-13 Score=130.52 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=108.2
Q ss_pred ccceEEEEecCCCc--cCCCC-CCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcc-cChhhhcccCCCEEe
Q 046470 502 EGAKRISLRGNRFD--SLSEI-PTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSK-LPSGISSLVSLHHLD 577 (888)
Q Consensus 502 ~~lr~L~l~~n~~~--~l~~~-~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~L~ 577 (888)
++++.|++++|.+. .++.. ..+++|++|++++|.++.+ ..|..+++|++|++++|.++. +|..++.+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57899999999987 67654 7788999999999998877 448889999999999999987 777777899999999
Q ss_pred ccCCcccccC--cccccCCccceeccccccccCCccc---cccCCCCCCcEEeccCCCCC
Q 046470 578 LSWTEITGLP--QELKALEKLRYLNLEHAYMLSIIPH---QLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 578 L~~~~i~~Lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~~~~~~ 632 (888)
+++|.++.+| ..+..+++|++|++++|.+ ..+|. ..+..+++|++|++.+|...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999876 6888999999999999976 55554 34888999999999888765
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=1.6e-13 Score=133.22 Aligned_cols=130 Identities=18% Similarity=0.296 Sum_probs=81.6
Q ss_pred ccccccceEEEEecCCCccCCCCCCCC-chhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhh-hcccCCCE
Q 046470 498 VEEWEGAKRISLRGNRFDSLSEIPTSP-RLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGI-SSLVSLHH 575 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~l~~~~~~~-~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~L~~L~~ 575 (888)
+..+.+++.|++++|.+..++.+..+. +|++|++++|.++.+ ..|..+++|++|++++|.++.+|..+ +.+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344556777777777777665554443 667777777766655 22666667777777777666665443 66667777
Q ss_pred EeccCCcccccCc--ccccCCccceeccccccccCCcccc---ccCCCCCCcEEeccCCC
Q 046470 576 LDLSWTEITGLPQ--ELKALEKLRYLNLEHAYMLSIIPHQ---LISGFSKLEVLRLLGCG 630 (888)
Q Consensus 576 L~L~~~~i~~Lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~ 630 (888)
|++++|.++.+|. .+..+++|++|++++|.+ ..+|.. ++..+++|++|++.+|.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 7777776666665 566666677777766654 344432 35566666666666554
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=1.3e-11 Score=136.31 Aligned_cols=283 Identities=17% Similarity=0.126 Sum_probs=172.3
Q ss_pred CcccchHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhcccccc---CCCCEEEEEEec------chHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ---HHFDVVIWAAVS------TLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~------~l~~~ 223 (888)
+.++||+.+++++..++... ....+.+.|+|++|+||||+|+.+++...... +.-...+|+++. .+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 56899999999999998542 34567899999999999999999998762110 112345677765 56677
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCcc----chhhhC---CCCCCC--CCCcEEEEEecch
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSILS--RKEFVLLLDDIWKPI----NLKDMG---VPLQNL--NAGSKIVLTTRSV 292 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~l~---~~l~~~--~~gs~iivTtR~~ 292 (888)
++.+++.... ....+..+....+.+.+. +++.+|||||++... ..+.+. ...... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 7777765321 123345666677777773 568899999998542 112221 111111 3456778888765
Q ss_pred h--------hhhccCCceeEcCCCChHHHHHHHHHHhhcc--cCCCCCChHHHHHHHHHHhC---CCcc-HHHHHHHHhc
Q 046470 293 D--------VCDQMDAEKVEVSCLAHDEAWKLFQKMVERS--TLDSHASIPELAKTLARECG---GLPL-ALKTVGRAMK 358 (888)
Q Consensus 293 ~--------v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~---g~Pl-ai~~~~~~l~ 358 (888)
. +.+.++...+.+.+++.++..+++.+.+... ....+ ++..+.+++.++ |.|- ++..+..+..
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 2 2333333478999999999999999886531 11122 356778888888 9994 3333332221
Q ss_pred -----cC--CChhHHHHHHHHHHhcccccCCchHHHHhhhhhccccchHHHHHHHhhhc-cCCCCccccHHHHHHHH---
Q 046470 359 -----SR--SNIGDWKRAIKKIRTSASKFSGMEEKVFSRLKFSYDSLSDELRSCLLYCC-LYPEDYKISKRELIDYW--- 427 (888)
Q Consensus 359 -----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s-~fp~~~~i~~~~li~~w--- 427 (888)
+. -+.+.+..++.... ...+.-++..|+.+.+..+..++ ++.....+...++.+..
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 11 24555555554332 12344467788888777766655 44322244445444432
Q ss_pred -HHcCCCcCc--chhHHHHHHHHHhcccccc
Q 046470 428 -ISEGFVDDF--DDGWEFINDLLHACLLEEE 455 (888)
Q Consensus 428 -~a~g~~~~~--~~~~~~l~~L~~~~ll~~~ 455 (888)
-..| ..+. ..+..+++.|...++++..
T Consensus 322 ~~~~~-~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLG-LEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTT-CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcC-CCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 2223 2221 2377888999999998864
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=4.1e-13 Score=146.66 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=80.1
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHh-cCCcccEEEcCCCCCcccC-hhhhcccCCCEEeccCCc
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQ-SMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDLSWTE 582 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 582 (888)
+.++.+++.+..+|.. -.+.++.|++++|.++.++...|. .+++|++|+|++|.|+.+| ..+..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 3566666666666531 124466677777777666666565 6777777777777777664 346677777777777777
Q ss_pred ccccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 583 ITGLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 583 i~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
|+.+|. .+.++++|++|++++|.+ ..++...+.++++|++|++++|.+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCC
Confidence 766544 466677777777777755 3343333667777777777766554
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.2e-12 Score=130.91 Aligned_cols=147 Identities=25% Similarity=0.362 Sum_probs=120.1
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEeccCCcc
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDLSWTEI 583 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~i 583 (888)
+.++..++.+..+|. ...++|++|++++|.++.++...|..+++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 456677777777764 2356899999999999999988899999999999999999988765 68999999999999999
Q ss_pred cccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCc
Q 046470 584 TGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLN 662 (888)
Q Consensus 584 ~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 662 (888)
+.+|.. +.++++|++|++++|.+ ..+|...+.++++|++|++++|..... ....+..+++|+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~----------------~~~~~~~l~~L~ 151 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSV----------------PDGVFDRLTSLQ 151 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC----------------CTTTTTTCTTCC
T ss_pred CccCHhHhcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCCcccee----------------CHHHhccCCCcc
Confidence 998765 68999999999999976 667766689999999999999876532 112355677777
Q ss_pred eEEEEEe
Q 046470 663 FLSWSFR 669 (888)
Q Consensus 663 ~L~l~~~ 669 (888)
.|+++.|
T Consensus 152 ~L~l~~N 158 (208)
T 2o6s_A 152 YIWLHDN 158 (208)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 7777644
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=3.4e-13 Score=126.84 Aligned_cols=123 Identities=24% Similarity=0.283 Sum_probs=98.0
Q ss_pred ccceEEEEecCCCc--cCCC-CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcc-cChhhhcccCCCEEe
Q 046470 502 EGAKRISLRGNRFD--SLSE-IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSK-LPSGISSLVSLHHLD 577 (888)
Q Consensus 502 ~~lr~L~l~~n~~~--~l~~-~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~L~ 577 (888)
++++.|++++|.+. .++. +..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57888999998887 5664 46788888888888888777 447888888888888888887 677777788888888
Q ss_pred ccCCcccccC--cccccCCccceeccccccccCCccc---cccCCCCCCcEEecc
Q 046470 578 LSWTEITGLP--QELKALEKLRYLNLEHAYMLSIIPH---QLISGFSKLEVLRLL 627 (888)
Q Consensus 578 L~~~~i~~Lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~ 627 (888)
+++|.++.+| ..++.+++|++|++++|.+ ..+|. ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence 8888888865 7788888888888888866 44554 347788888888775
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=4.1e-11 Score=132.15 Aligned_cols=284 Identities=13% Similarity=0.051 Sum_probs=171.1
Q ss_pred CcccchHHHHHHHHHHhhc--CCCCceEEEEEcCCCCcHHHHHHHHHhccccc----cCC-CCEEEEEEec-------ch
Q 046470 155 HTVVGQELLLYRVWKCITD--QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHE----QHH-FDVVIWAAVS-------TL 220 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~~-------~l 220 (888)
..++||+.+++++.+++.. .....+.+.|+|++|+||||+|+.+++..... ... ....+|+++. .+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5689999999999988864 23456789999999999999999999875211 011 3456777754 34
Q ss_pred HHHHHHHc-CCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc---hhhhCCCCCCCCCCcEEEEEecchhh--
Q 046470 221 QDDIGKRI-GFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN---LKDMGVPLQNLNAGSKIVLTTRSVDV-- 294 (888)
Q Consensus 221 ~~~i~~~l-~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtR~~~v-- 294 (888)
...++.++ +... .....+.......+.+.+..++.+|||||++.... .+.+...+.....+..||+||+....
T Consensus 100 ~~~l~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSV-PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCC-CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCC-CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 55556655 2211 11233456677778888887777999999976321 11101111111167888889887532
Q ss_pred ------hhccCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhC---CCcc-HHHHHHHHh--cc---
Q 046470 295 ------CDQMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECG---GLPL-ALKTVGRAM--KS--- 359 (888)
Q Consensus 295 ------~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~Pl-ai~~~~~~l--~~--- 359 (888)
.+..+. .+.+.+++.++..+++.+.+.... ....--++..+.|++.|+ |.|. |+..+-.+. ..
T Consensus 179 ~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~ 256 (384)
T 2qby_B 179 YMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGG 256 (384)
T ss_dssp TSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSS
T ss_pred hhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 222222 889999999999999999864211 001112467788999998 8886 444443322 21
Q ss_pred CCChhHHHHHHHHHHhcccccCCchHHHHhhhhhccccchHHHHHHHhhhccCCCCccccHHHHHHHHHHcCCCc-Ccch
Q 046470 360 RSNIGDWKRAIKKIRTSASKFSGMEEKVFSRLKFSYDSLSDELRSCLLYCCLYPEDYKISKRELIDYWISEGFVD-DFDD 438 (888)
Q Consensus 360 ~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~-~~~~ 438 (888)
.-+.+.+..+++.... ..+.-++..|+.+.+..+..++....+-.+. +......-..|... ....
T Consensus 257 ~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 257 IIRKEHVDKAIVDYEQ-------------ERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp CCCHHHHHHHHHHHHH-------------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTTCCCCCHHH
T ss_pred ccCHHHHHHHHHHHhc-------------chHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcCCCCCCHHH
Confidence 2355666666554321 2345567788887777776666511101111 11111112233111 1122
Q ss_pred hHHHHHHHHHhcccccc
Q 046470 439 GWEFINDLLHACLLEEE 455 (888)
Q Consensus 439 ~~~~l~~L~~~~ll~~~ 455 (888)
..++++.|...++++..
T Consensus 323 ~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 323 FSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 77889999999999864
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=1.2e-12 Score=142.94 Aligned_cols=152 Identities=26% Similarity=0.282 Sum_probs=126.8
Q ss_pred ccceEEEEecCCCccCCC--CC-CCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEEe
Q 046470 502 EGAKRISLRGNRFDSLSE--IP-TSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHLD 577 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~--~~-~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 577 (888)
..++.|++++|.+..++. +. .+++|++|++++|.++.+++..|..+++|++|+|++|.++.+|. .+..+.+|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 468999999999998764 44 89999999999999999998889999999999999999998865 589999999999
Q ss_pred ccCCccccc-CcccccCCccceeccccccccCCcccccc---CCCCCCcEEeccCCCCCCcccccccCcccccchhhHHH
Q 046470 578 LSWTEITGL-PQELKALEKLRYLNLEHAYMLSIIPHQLI---SGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMK 653 (888)
Q Consensus 578 L~~~~i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i---~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (888)
|++|.|+.+ |..+.++++|++|++++|.+ ..+|...+ ..+++|++|++++|.+... ...
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l----------------~~~ 181 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKL----------------PLT 181 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCCCC----------------CHH
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCCcc----------------CHH
Confidence 999999997 67899999999999999976 77887755 6799999999999987632 234
Q ss_pred HhhcCCC--CceEEEEEec
Q 046470 654 ELLGLKH--LNFLSWSFRS 670 (888)
Q Consensus 654 ~L~~L~~--L~~L~l~~~~ 670 (888)
.+..++. |+.|++..|.
T Consensus 182 ~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHSCHHHHTTEECCSSC
T ss_pred HhhhccHhhcceEEecCCC
Confidence 4555554 3667776554
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=2.8e-12 Score=126.16 Aligned_cols=127 Identities=21% Similarity=0.356 Sum_probs=110.4
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccch-HHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCc
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDG-FFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTE 582 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 582 (888)
+.++++++.+..+|.. -..+|++|++++|.++.+++. .|..+++|++|+|++|.|+.+ |..++.+.+|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 6788999999888762 234899999999999988864 589999999999999999987 7889999999999999999
Q ss_pred ccccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCC
Q 046470 583 ITGLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 583 i~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
|+.+|. .+.++++|++|++++|++....|.. +..+++|++|++.+|...+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccC
Confidence 999755 5899999999999999875544554 8999999999999998764
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=5.6e-12 Score=122.36 Aligned_cols=128 Identities=23% Similarity=0.402 Sum_probs=111.4
Q ss_pred ceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEeccCCc
Q 046470 504 AKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDLSWTE 582 (888)
Q Consensus 504 lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 582 (888)
.+.+++.++.+..+|. ...++|++|++++|.++.+++..|..+++|++|++++|.++.+|.. ++.+++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3567888888888774 3347899999999999999988889999999999999999988755 6899999999999999
Q ss_pred ccccCcc-cccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCC
Q 046470 583 ITGLPQE-LKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 583 i~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
++.+|.. +..+++|++|++++|.+ ..+|...+..+++|++|++.+|....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCCeec
Confidence 9998765 68999999999999976 67887767899999999999998764
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=5.3e-12 Score=124.13 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=109.7
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEEeccCCcc
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDLSWTEI 583 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~i 583 (888)
+.++++++.+..+|.. -.++|++|++++|.++.++ ..|..+++|++|+|++|.|+.++ ..+..+.+|++|+|++|.|
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4678888888888753 2468999999999999888 45899999999999999999885 5699999999999999999
Q ss_pred cccCc-ccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCC
Q 046470 584 TGLPQ-ELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 584 ~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
+.+|. .+..+++|++|++++|.+ ..+|.+.+..+++|++|++.+|...+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCeec
Confidence 99754 699999999999999976 67887778999999999999988764
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=1.5e-12 Score=126.27 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=115.0
Q ss_pred CCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCccc-ccCCc
Q 046470 517 LSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQEL-KALEK 595 (888)
Q Consensus 517 l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i-~~L~~ 595 (888)
.+.+..+++|++|++++|.++.++. +....++|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+ ..+++
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HHhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3456678899999999999988754 333344999999999999988 68999999999999999999998765 99999
Q ss_pred cceeccccccccCCccc-cccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechhhH
Q 046470 596 LRYLNLEHAYMLSIIPH-QLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSLAV 674 (888)
Q Consensus 596 L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 674 (888)
|++|++++|.+ ..+|. ..+..+++|++|++++|..... .......+..+++|+.|+++.+.....
T Consensus 90 L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~-------------~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 90 LTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNK-------------KHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGS-------------TTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCc-------------HhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 99999999976 67775 2388999999999999977532 112233577889999999988876543
No 134
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=1.4e-10 Score=128.05 Aligned_cols=284 Identities=13% Similarity=0.092 Sum_probs=167.0
Q ss_pred CcccchHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec------chHHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS------TLQDDIGK 226 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~------~l~~~i~~ 226 (888)
..++||+.+++.+.+++... ....+.+.|+|++|+||||||+.+++........-...+|+.+. .+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999998742 34567899999999999999999998762111102356677765 44556665
Q ss_pred HcCCChhhhcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCcc------chhhhCCCCCC-CCCCcEEEEEecchhhh--
Q 046470 227 RIGFSENWWKKKSPEEKAVDISSILS--RKEFVLLLDDIWKPI------NLKDMGVPLQN-LNAGSKIVLTTRSVDVC-- 295 (888)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~-~~~gs~iivTtR~~~v~-- 295 (888)
+++.... ....+..+....+.+.+. +++.+|||||++... .+..+...+.. ...+..+|+||+.....
T Consensus 100 ~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVP-FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCC-SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 5554321 123345566666666664 458999999997532 22222111111 23356678888765432
Q ss_pred ------hccCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhC---CCccHHHHH-HHHhc-----c-
Q 046470 296 ------DQMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECG---GLPLALKTV-GRAMK-----S- 359 (888)
Q Consensus 296 ------~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~Plai~~~-~~~l~-----~- 359 (888)
+.+....+.+.+++.++..+++.+.+.... ....-..+..+.+++.++ |.|..+..+ ..+.. +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~ 257 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKD 257 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 222223789999999999999998764321 111222677888888888 999844333 22211 1
Q ss_pred -CCChhHHHHHHHHHHhcccccCCchHHHHhhhhhccccchHHHHHHHhhhccCCC-C-ccccHHHHHHHH----HHcCC
Q 046470 360 -RSNIGDWKRAIKKIRTSASKFSGMEEKVFSRLKFSYDSLSDELRSCLLYCCLYPE-D-YKISKRELIDYW----ISEGF 432 (888)
Q Consensus 360 -~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~-~-~~i~~~~li~~w----~a~g~ 432 (888)
.-+.+.++.++.... ...+.-++..+|...+..+..++.+-+ + ..+...++.+.. -..|
T Consensus 258 ~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 258 TKVKEEYVYMAKEEIE-------------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp SSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred CccCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 123444554444321 123444567788777776666653211 1 123333332221 1123
Q ss_pred CcCc--chhHHHHHHHHHhccccc
Q 046470 433 VDDF--DDGWEFINDLLHACLLEE 454 (888)
Q Consensus 433 ~~~~--~~~~~~l~~L~~~~ll~~ 454 (888)
+.+. .....+++.|...++++.
T Consensus 324 ~~~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 VEAVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 1221 236788999999999875
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.28 E-value=1.6e-10 Score=127.76 Aligned_cols=286 Identities=13% Similarity=0.070 Sum_probs=172.3
Q ss_pred CcccchHHHHHHHHHHhhcC----CCCceEEEEEcCCCCcHHHHHHHHHhccccccCC-CCEEEEEEec------chHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ----DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHH-FDVVIWAAVS------TLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~------~l~~~ 223 (888)
+.++||+.+++++..++... .+..+.+.|+|++|+||||+|+.+++.. ... -..++|+.++ .+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 56899999999999988651 1223489999999999999999999876 222 2356677755 56677
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHHhc--cCcEEEEEccCCCc--cchhhhCCCCCCC-C---CCcEEEEEecchhhh
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSILS--RKEFVLLLDDIWKP--INLKDMGVPLQNL-N---AGSKIVLTTRSVDVC 295 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~l~~~l~~~-~---~gs~iivTtR~~~v~ 295 (888)
++..++.... ....+.......+.+.+. +++.+|||||++.. ..+..+...+... . .+..||+||+.....
T Consensus 94 l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFP-RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCC-SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCC-CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 7777764321 123345666666666664 56889999999764 2233332222111 1 466788888765433
Q ss_pred hc--------cCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHh---------CCCccHHHHHHHH-h
Q 046470 296 DQ--------MDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLAREC---------GGLPLALKTVGRA-M 357 (888)
Q Consensus 296 ~~--------~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~g~Plai~~~~~~-l 357 (888)
.. +....+.+.+++.++..+++...+..... ...--++....|++.+ +|.|..+..+... .
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 22 22236899999999999999988754110 0112267788999999 7887554444322 1
Q ss_pred c----cCCChhHHHHHHHHHHhcccccCCchHHHHhhhhhccccchHHHHHHHhhhccCC---CCccccHHHHHHHHHH-
Q 046470 358 K----SRSNIGDWKRAIKKIRTSASKFSGMEEKVFSRLKFSYDSLSDELRSCLLYCCLYP---EDYKISKRELIDYWIS- 429 (888)
Q Consensus 358 ~----~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp---~~~~i~~~~li~~w~a- 429 (888)
. .....-.+..+...+.... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 1 0111111222222111110 11122235667888887777777553 2224566666554433
Q ss_pred ---cCCCc-CcchhHHHHHHHHHhcccccc
Q 046470 430 ---EGFVD-DFDDGWEFINDLLHACLLEEE 455 (888)
Q Consensus 430 ---~g~~~-~~~~~~~~l~~L~~~~ll~~~ 455 (888)
.|... .......++++|...+++...
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 322 CEEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 23222 112377889999999999874
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=2.8e-12 Score=120.50 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=104.7
Q ss_pred CCCchhhhhhccCCcc--cccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccc-cCcccccCCccce
Q 046470 522 TSPRLITLLLIANSID--EITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITG-LPQELKALEKLRY 598 (888)
Q Consensus 522 ~~~~Lr~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~i~~L~~L~~ 598 (888)
..++|+.|++++|.++ .++. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999988 5555 478999999999999999988 789999999999999999998 7888888999999
Q ss_pred eccccccccCCcc--ccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEE
Q 046470 599 LNLEHAYMLSIIP--HQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSW 666 (888)
Q Consensus 599 L~l~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 666 (888)
|++++|.+ ..+| .. ++.+++|++|++++|..... .......+..+++|+.|++
T Consensus 93 L~ls~N~i-~~~~~~~~-~~~l~~L~~L~l~~N~l~~~-------------~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKI-KDLSTIEP-LKKLENLKSLDLFNCEVTNL-------------NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCC-CSHHHHGG-GGGCTTCCEEECTTCGGGGS-------------TTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcC-CChHHHHH-HhhCCCCCEEeCcCCcccch-------------HHHHHHHHHHCCCcccccC
Confidence 99999976 5554 44 89999999999999876532 1111245677788887765
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.24 E-value=2.4e-11 Score=116.66 Aligned_cols=114 Identities=28% Similarity=0.311 Sum_probs=103.5
Q ss_pred ccccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccC--hhhhcccCCCE
Q 046470 498 VEEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLP--SGISSLVSLHH 575 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~ 575 (888)
+..+++++.|++++|.+..++.+..+++|++|++++|.+....+..+..+++|++|++++|.++.+| ..++.+++|++
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred HHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 4778999999999999998878899999999999999998866777888999999999999999886 78999999999
Q ss_pred EeccCCcccccCc----ccccCCccceeccccccccCCccc
Q 046470 576 LDLSWTEITGLPQ----ELKALEKLRYLNLEHAYMLSIIPH 612 (888)
Q Consensus 576 L~L~~~~i~~Lp~----~i~~L~~L~~L~l~~~~~l~~lp~ 612 (888)
|++++|.++.+|. .+..+++|++|++++|.. ..+|.
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~ 164 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED-QEAPD 164 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS-CBCCS
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh-hhccc
Confidence 9999999999887 799999999999999965 66665
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=1.5e-11 Score=141.58 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=54.4
Q ss_pred hhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceecccccc
Q 046470 526 LITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAY 605 (888)
Q Consensus 526 Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~ 605 (888)
|++|++++|.++.+|. |..+++|++|+|++|.|+.+|..++.+++|++|+|++|.|+.+| .++++++|++|++++|.
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 4444444444444443 45555555555555555555555555555555555555555555 55555555555555554
Q ss_pred ccCCc-cccccCCCCCCcEEeccCCCC
Q 046470 606 MLSII-PHQLISGFSKLEVLRLLGCGS 631 (888)
Q Consensus 606 ~l~~l-p~~~i~~L~~L~~L~l~~~~~ 631 (888)
+.... |.. +++|++|++|++++|..
T Consensus 520 l~~~~~p~~-l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 520 LQQSAAIQP-LVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred CCCCCCcHH-HhcCCCCCEEEecCCcC
Confidence 42222 433 55555555555555544
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=1.6e-11 Score=141.36 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=107.5
Q ss_pred cceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCc
Q 046470 503 GAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTE 582 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 582 (888)
.++.|++++|.+..+|.+..+++|++|++++|.++.+|.. |+.+++|++|+|++|.|+.+| .++.+++|++|+|++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 4789999999999999999999999999999999988775 899999999999999999999 89999999999999999
Q ss_pred cccc--CcccccCCccceeccccccccCCcccc---ccCCCCCCcEEec
Q 046470 583 ITGL--PQELKALEKLRYLNLEHAYMLSIIPHQ---LISGFSKLEVLRL 626 (888)
Q Consensus 583 i~~L--p~~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l 626 (888)
|+.+ |..++++++|++|++++|.+ ..+|+. ++..+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 9998 89999999999999999977 444432 1234788888863
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=2.2e-11 Score=119.64 Aligned_cols=124 Identities=22% Similarity=0.293 Sum_probs=104.4
Q ss_pred hhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccC-cccccCCccceecccccc
Q 046470 527 ITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLP-QELKALEKLRYLNLEHAY 605 (888)
Q Consensus 527 r~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~l~~~~ 605 (888)
++++++++.++.+|... .++|++|+|++|.|+.+|..+..+.+|++|+|++|.|+.++ ..+.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 56888899999988763 36899999999999999999999999999999999999985 569999999999999997
Q ss_pred ccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEec
Q 046470 606 MLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRS 670 (888)
Q Consensus 606 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 670 (888)
+ ..+|...+.++++|++|++++|.+... ....+..+++|+.|+++.|.
T Consensus 90 l-~~i~~~~f~~l~~L~~L~L~~N~l~~~----------------~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 L-RCIPPRTFDGLKSLRLLSLHGNDISVV----------------PEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp C-CBCCTTTTTTCTTCCEEECCSSCCCBC----------------CTTTTTTCTTCCEEECCSSC
T ss_pred c-CEeCHHHhCCCCCCCEEECCCCCCCee----------------ChhhhhcCccccEEEeCCCC
Confidence 6 666665699999999999999987632 12235677888888887654
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=1.5e-11 Score=146.24 Aligned_cols=110 Identities=27% Similarity=0.372 Sum_probs=71.0
Q ss_pred CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCcccee
Q 046470 520 IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYL 599 (888)
Q Consensus 520 ~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 599 (888)
+..+++|++|+|++|.+..++...+ .+++|++|+|++|.|+.+|..|++|.+|++|+|++|.|+.+|..+++|++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 4455666666666666666665533 566666666666666666666666666666666666666666666666666666
Q ss_pred ccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 600 NLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 600 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
+|++|.+ ..+|.. +++|++|++|++++|.+.
T Consensus 299 ~L~~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 299 YFFDNMV-TTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ECCSSCC-CCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred ECCCCCC-CccChh-hhcCCCccEEeCCCCccC
Confidence 6666644 466665 666666666666666554
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.17 E-value=7.4e-11 Score=121.12 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=116.9
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSEN 233 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~ 233 (888)
..++||+..++.+..++... ...+.+.|+|++|+||||+|+.+++... ....+. .+.+.. .....+.........
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 98 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGIT--ATPCGVCDNCREIEQGRFVDLI 98 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-CCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSC--SSCCSCSHHHHHHHTTCCSSEE
T ss_pred HHHhCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC--CCCCcccHHHHHHhccCCcceE
Confidence 35899999999999999763 2235889999999999999999988762 111110 000000 000011100000000
Q ss_pred hh--cCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecchhh-hhcc-C-Cc
Q 046470 234 WW--KKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSVDV-CDQM-D-AE 301 (888)
Q Consensus 234 ~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~-~-~~ 301 (888)
.. ...........+.+.+ .+++.+||+||++.. ..+..+...+.....+..+|+||+.... .... . ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~ 178 (250)
T 1njg_A 99 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 178 (250)
T ss_dssp EEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred EecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhh
Confidence 00 0001111122222222 346799999999753 3444444334334557888888876432 1111 1 23
Q ss_pred eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHh
Q 046470 302 KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAM 357 (888)
Q Consensus 302 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 357 (888)
.+++.+++.++..+++.+.+.......+ ++....|++.|+|.|..+..+...+
T Consensus 179 ~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 179 QFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999988765332222 5678899999999999988776543
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=2.3e-11 Score=144.69 Aligned_cols=151 Identities=21% Similarity=0.202 Sum_probs=97.2
Q ss_pred ccceEEEEecCCCccCCC-CCCCCchhh-----hhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCE
Q 046470 502 EGAKRISLRGNRFDSLSE-IPTSPRLIT-----LLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHH 575 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~~-~~~~~~Lr~-----L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 575 (888)
.++++|++.+|.+...+. ......|+. +++..|.+. +++..|..++.|++|+|++|.+..+|..++.+.+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 467888888887766432 122222222 333334333 4566689999999999999999999999999999999
Q ss_pred EeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHh
Q 046470 576 LDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKEL 655 (888)
Q Consensus 576 L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 655 (888)
|+|++|.|+.+|..+++|++|++|+|++|.+ ..+|.. +++|++|++|++++|.+.. .+..+
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~-----------------lp~~~ 312 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAE-LGSCFQLKYFYFFDNMVTT-----------------LPWEF 312 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCC-SSCCSS-GGGGTTCSEEECCSSCCCC-----------------CCSST
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcC-CccChh-hcCCCCCCEEECCCCCCCc-----------------cChhh
Confidence 9999999999999999999999999999986 588987 8999999999999997652 12347
Q ss_pred hcCCCCceEEEEEechh
Q 046470 656 LGLKHLNFLSWSFRSSL 672 (888)
Q Consensus 656 ~~L~~L~~L~l~~~~~~ 672 (888)
.+|++|+.|+++.|...
T Consensus 313 ~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TSCTTCCCEECTTSCCC
T ss_pred hcCCCccEEeCCCCccC
Confidence 78999999999887654
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=2e-11 Score=119.97 Aligned_cols=124 Identities=22% Similarity=0.339 Sum_probs=103.6
Q ss_pred hhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh--hhcccCCCEEeccCCccccc-CcccccCCccceecccc
Q 046470 527 ITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG--ISSLVSLHHLDLSWTEITGL-PQELKALEKLRYLNLEH 603 (888)
Q Consensus 527 r~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~--i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~ 603 (888)
++++++++.++.+|...+ .+|++|++++|.|+.+|.. ++.+++|++|+|++|.|+.+ |..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 678999999999987643 3899999999999988754 89999999999999999997 78899999999999999
Q ss_pred ccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEec
Q 046470 604 AYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRS 670 (888)
Q Consensus 604 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 670 (888)
|.+ ..++...+.++++|++|++++|.+... ....+..+++|+.|+++.|.
T Consensus 88 N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKI-KEISNKMFLGLHQLKTLNLYDNQISCV----------------MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCC-CEECSSSSTTCTTCCEEECCSSCCCEE----------------CTTSSTTCTTCCEEECTTCC
T ss_pred CcC-CccCHHHhcCCCCCCEEECCCCcCCee----------------CHHHhhcCCCCCEEEeCCCC
Confidence 976 556555589999999999999987532 23346677888888887654
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.15 E-value=3.6e-10 Score=114.05 Aligned_cols=178 Identities=14% Similarity=0.132 Sum_probs=113.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENW 234 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~ 234 (888)
..++|++..++.+.+++.. ...+.+.|+|++|+|||++|+.+++... ....-...+.+..+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~---------------- 77 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNAS---------------- 77 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHT--TCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETT----------------
T ss_pred HHHcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccc----------------
Confidence 4589999999999999977 3344589999999999999999988751 11111112223222
Q ss_pred hcCCCHHHHHHHHHHHh------ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecchhh-hhcc--CCcee
Q 046470 235 WKKKSPEEKAVDISSIL------SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSVDV-CDQM--DAEKV 303 (888)
Q Consensus 235 ~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~--~~~~~ 303 (888)
...........+.... .+++.+||+||++.. .....+...+.....+.++|+||+...- .... ....+
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 78 -DERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp -CTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred -cccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 1112222222333332 257899999999864 2233333333333457788888876432 1111 11278
Q ss_pred EcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHH
Q 046470 304 EVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGR 355 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 355 (888)
.+.+++.++..+++.+.+.......+ ++....|++.++|.|..+..+..
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999988754332222 56788899999999986554433
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=7.8e-11 Score=126.77 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=74.6
Q ss_pred ccCCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCCCc--hhhhccCcc-eEeeecccccchhccc
Q 046470 707 YMENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKDLT--WLVFVQNLK-ELEISRCHAVEDIISV 783 (888)
Q Consensus 707 ~l~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~-~L~L~~c~~l~~l~~~ 783 (888)
.+++|+.|++.+|.+..++...+. .+++|+.|+|.++ ++.++ .+..+++|+ .|.+.+ .++.+..
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~--------~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~- 290 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFA--------QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF- 290 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTT--------TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-
T ss_pred hcCCCeEEECCCCCcceecHhhhh--------CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-
Confidence 368899999988888877666554 5888999999876 55554 477888998 999986 5666654
Q ss_pred ccccccccccCccCccccccceeeccccccccccCCCCC-CCCCccEEE
Q 046470 784 DKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSIYPNPL-PFPKLKKIQ 831 (888)
Q Consensus 784 ~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~ 831 (888)
..+..+++|+.|.+.++ +++.++...+ .+++|+.|+
T Consensus 291 -----------~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 -----------GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -----------TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred -----------hhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 46778889999998765 6777776433 467777665
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=3.4e-12 Score=126.32 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=69.4
Q ss_pred HHhcCCcccEEEcCCCCCcccChhhhcccCCCEEeccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCc
Q 046470 543 FFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLE 622 (888)
Q Consensus 543 ~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 622 (888)
.|..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+..+++|++|++++|.+ ..+|. +.++++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l-~~l~~--~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLSG--IEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC-CCHHH--HHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC-CcCCc--cccCCCCC
Confidence 3666677777777777666666 66666777777777776666666666666777777776654 44552 56666777
Q ss_pred EEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEech
Q 046470 623 VLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSS 671 (888)
Q Consensus 623 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 671 (888)
+|++++|.... ...+..+..+++|+.|+++.|..
T Consensus 119 ~L~l~~N~i~~---------------~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 119 VLYMSNNKITN---------------WGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEESEEECCC---------------HHHHHHHTTTTTCSEEEECSCHH
T ss_pred EEECCCCcCCc---------------hhHHHHHhcCCCCCEEEecCCcc
Confidence 77776665541 11224566666666666665554
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=1.8e-12 Score=128.33 Aligned_cols=153 Identities=24% Similarity=0.303 Sum_probs=113.7
Q ss_pred cceEEEEecC--CCccCC-CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEEecc
Q 046470 503 GAKRISLRGN--RFDSLS-EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHLDLS 579 (888)
Q Consensus 503 ~lr~L~l~~n--~~~~l~-~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 579 (888)
.++...+.+. .++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|..++.+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 3444555443 344444 3567889999999999998877 4889999999999999999999888899999999999
Q ss_pred CCcccccCcccccCCccceeccccccccCCccc-cccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcC
Q 046470 580 WTEITGLPQELKALEKLRYLNLEHAYMLSIIPH-QLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGL 658 (888)
Q Consensus 580 ~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 658 (888)
+|.++.+| .+..+++|++|++++|.+ ..+|. ..+..+++|++|++.+|......... ..........+..+
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~------~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN------NATSEYRIEVVKRL 173 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT------TTHHHHHHHHHHHC
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccccccc------cchHHHHHHHHHhC
Confidence 99999987 689999999999999976 55553 23889999999999988664210000 00011122346778
Q ss_pred CCCceEE
Q 046470 659 KHLNFLS 665 (888)
Q Consensus 659 ~~L~~L~ 665 (888)
++|+.|+
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 8888776
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=1.7e-10 Score=111.69 Aligned_cols=111 Identities=28% Similarity=0.446 Sum_probs=98.8
Q ss_pred cccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEe
Q 046470 501 WEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLD 577 (888)
Q Consensus 501 ~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 577 (888)
.++++.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++|.++.+|.. ++.+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 4689999999999988774 57899999999999999999988889999999999999999988765 68999999999
Q ss_pred ccCCcccccCcc-cccCCccceeccccccccCCcc
Q 046470 578 LSWTEITGLPQE-LKALEKLRYLNLEHAYMLSIIP 611 (888)
Q Consensus 578 L~~~~i~~Lp~~-i~~L~~L~~L~l~~~~~l~~lp 611 (888)
+++|.++.+|.. +..+++|++|++++|.+....|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999998876 5889999999999997644433
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=1e-10 Score=125.82 Aligned_cols=100 Identities=9% Similarity=0.058 Sum_probs=75.8
Q ss_pred cCCCccEEEEecCCCCCCCc--hhhhccCcceEeeecccccchhcccccccccccccCccCccccccc-eeecccccccc
Q 046470 739 GFRSLSIVSVENCEKMKDLT--WLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNFFAQLE-ALNIFNNVNLK 815 (888)
Q Consensus 739 ~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~-~L~L~~~~~L~ 815 (888)
.+++|+.|+|.+| .++.++ .+..+++|+.|+|.++ ++.++. ..+..+++|+ .+.|.+ +++
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~------------~aF~~~~~L~~~l~l~~--~l~ 286 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ------------RVFSNCGRLAGTLELPA--SVT 286 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT------------TTTTTCTTCCEEEEECT--TCC
T ss_pred hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH------------HHhhCChhccEEEEEcc--cce
Confidence 3788999999887 466665 4778899999999874 776655 4677888898 998887 677
Q ss_pred ccCCC-CCCCCCccEEEecCCCCCCCCCCCCCcccCcceEEE
Q 046470 816 SIYPN-PLPFPKLKKIQIYSCPELKKLPLNSSSAKERRVVIE 856 (888)
Q Consensus 816 ~i~~~-~~~~p~L~~L~i~~C~~L~~lP~~~~~~~~~l~~i~ 856 (888)
.+... ...|++|+.|++.+ .+++.++......+.+|+.++
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred EEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 77654 34588999999866 478888887777667777664
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=1.7e-10 Score=111.21 Aligned_cols=102 Identities=22% Similarity=0.357 Sum_probs=64.9
Q ss_pred hhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCcccccCcc-cccCCccceecccccc
Q 046470 528 TLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTEITGLPQE-LKALEKLRYLNLEHAY 605 (888)
Q Consensus 528 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~~~~ 605 (888)
.+++++|.+..+|..+ .++|++|+|++|.|+.+ |..++++++|++|+|++|+|+.+|.. +.++++|++|++++|+
T Consensus 16 ~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4455555555555442 25666777777777666 44566777777777777777776654 4667777777777775
Q ss_pred ccCCccccccCCCCCCcEEeccCCCCCC
Q 046470 606 MLSIIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 606 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
+ ..+|...+..+++|++|++.+|...+
T Consensus 93 l-~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 L-KSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp C-CCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred c-ceeCHHHhccccCCCEEEeCCCCccc
Confidence 4 45555556677777777777776553
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=2.1e-10 Score=110.18 Aligned_cols=104 Identities=27% Similarity=0.390 Sum_probs=74.4
Q ss_pred hhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCcccccCcc-cccCCccceecccc
Q 046470 526 LITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTEITGLPQE-LKALEKLRYLNLEH 603 (888)
Q Consensus 526 Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~~ 603 (888)
.+++++++|.++.+|... .++|++|+|++|.|+.+ |..++.+.+|++|+|++|+|+.+|.. +.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345666666666666542 36777888888888776 55677788888888888888777654 57788888888888
Q ss_pred ccccCCccccccCCCCCCcEEeccCCCCCC
Q 046470 604 AYMLSIIPHQLISGFSKLEVLRLLGCGSNC 633 (888)
Q Consensus 604 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 633 (888)
|.+ ..+|.+.+.++++|++|++++|...+
T Consensus 88 N~l-~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQL-KSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred Ccc-CEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 865 55666557788888888888776653
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=2.2e-10 Score=110.41 Aligned_cols=101 Identities=24% Similarity=0.372 Sum_probs=91.1
Q ss_pred eEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEeccCCcc
Q 046470 505 KRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDLSWTEI 583 (888)
Q Consensus 505 r~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~i 583 (888)
+.+++++|.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++|.|+.+|.. +..+++|++|+|++|.|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 67899999999887632 38999999999999999888899999999999999999999876 58999999999999999
Q ss_pred cccCcc-cccCCccceeccccccc
Q 046470 584 TGLPQE-LKALEKLRYLNLEHAYM 606 (888)
Q Consensus 584 ~~Lp~~-i~~L~~L~~L~l~~~~~ 606 (888)
+.+|.. +..+++|++|++++|.+
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ceeCHHHhccccCCCEEEeCCCCc
Confidence 999876 89999999999999976
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=2.2e-10 Score=109.93 Aligned_cols=102 Identities=24% Similarity=0.388 Sum_probs=91.5
Q ss_pred ceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChh-hhcccCCCEEeccCCc
Q 046470 504 AKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSG-ISSLVSLHHLDLSWTE 582 (888)
Q Consensus 504 lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 582 (888)
.+.+++++|.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++|.|+.+|.. +..+++|++|+|++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 467899999999887532 48899999999999999888899999999999999999999765 5899999999999999
Q ss_pred ccccCcc-cccCCccceeccccccc
Q 046470 583 ITGLPQE-LKALEKLRYLNLEHAYM 606 (888)
Q Consensus 583 i~~Lp~~-i~~L~~L~~L~l~~~~~ 606 (888)
|+.+|.. +.++++|++|++++|.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 9998764 89999999999999976
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=1.1e-09 Score=117.45 Aligned_cols=179 Identities=13% Similarity=0.177 Sum_probs=113.1
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENW 234 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~ 234 (888)
..++|++..++.+.+++.. +..+.+.++|++|+||||+|+.+++... ........+++..++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~--------------- 82 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD--GNMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASD--------------- 82 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS--CCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTS---------------
T ss_pred HHHHCCHHHHHHHHHHHHc--CCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCcc---------------
Confidence 4589999999999999977 3444489999999999999999998751 111101122232221
Q ss_pred hcCCCHHHHHHHHHHHh-------ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecchh-hhhcc--CCce
Q 046470 235 WKKKSPEEKAVDISSIL-------SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSVD-VCDQM--DAEK 302 (888)
Q Consensus 235 ~~~~~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~--~~~~ 302 (888)
......+...+.... .+++.++|+||++.. ..+..+...+.....++++|+||+... +.... ....
T Consensus 83 --~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 83 --DRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp --CCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred --ccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 112233333333322 446899999999864 233333333333345678888886633 21111 1228
Q ss_pred eEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc-HHHHHHHH
Q 046470 303 VEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL-ALKTVGRA 356 (888)
Q Consensus 303 ~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~~ 356 (888)
+++.+++.++..+++.+.+.......+ ++....|++.|+|.|. |+..+...
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 899999999999999988754332222 5678899999999995 45554433
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.89 E-value=7.2e-09 Score=111.14 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=106.4
Q ss_pred CcccchHHHHHHHHHHhhc---CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCC
Q 046470 155 HTVVGQELLLYRVWKCITD---QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFS 231 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~ 231 (888)
..++|++..++.+..++.. .......+.|+|++|+|||++|+.+++.. ... .+++..+.+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~----------- 74 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAI----------- 74 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTC-----------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEecccc-----------
Confidence 4689999999888888753 12234678899999999999999998875 222 234433311
Q ss_pred hhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--chhhhCCCCCC------------------CCCCcEEEEEecc
Q 046470 232 ENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--NLKDMGVPLQN------------------LNAGSKIVLTTRS 291 (888)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~------------------~~~gs~iivTtR~ 291 (888)
....++...+...+ .++.+|+|||++... ....+...+.. ...+..+|.||..
T Consensus 75 ------~~~~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 75 ------EKPGDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp ------CSHHHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred ------CChHHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 11112211111111 356789999997642 11111111100 0123556666654
Q ss_pred hh-h----hhccCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHh
Q 046470 292 VD-V----CDQMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAM 357 (888)
Q Consensus 292 ~~-v----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 357 (888)
.. + ..++ ...+.+.+++.++..+++.+.+.......+ ++....+++.++|.|-.+..+...+
T Consensus 148 ~~~~~~~l~~R~-~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 148 PGLITAPLLSRF-GIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CSSCSCSTTTTC-SCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred cccCCHHHHhcc-cEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 32 2 2222 127899999999999999888764332222 5778999999999998887766544
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=4.9e-08 Score=107.17 Aligned_cols=98 Identities=22% Similarity=0.232 Sum_probs=53.8
Q ss_pred chhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCCCEEeccCCcccccCcccccCCccceecccc
Q 046470 525 RLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSLHHLDLSWTEITGLPQELKALEKLRYLNLEH 603 (888)
Q Consensus 525 ~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~ 603 (888)
+|+.+.+..+ ++.+....|.++ +|+.+.+.. .++.+ +..|.+|.+|+.+++++|+++.+|...-...+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 4555555444 555555555553 466666654 44444 2345566666666666666666554433345666666654
Q ss_pred ccccCCccccccCCCCCCcEEecc
Q 046470 604 AYMLSIIPHQLISGFSKLEVLRLL 627 (888)
Q Consensus 604 ~~~l~~lp~~~i~~L~~L~~L~l~ 627 (888)
+ +..++...+.++++|+.+.+.
T Consensus 213 ~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 213 T--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp T--CCEECTTTTTTCTTCCCEECC
T ss_pred c--hheehhhHhhCCCCCCEEecC
Confidence 3 345555555566666666554
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=3.5e-08 Score=108.38 Aligned_cols=122 Identities=14% Similarity=0.281 Sum_probs=94.1
Q ss_pred ccccccceEEEEecCCCccCCC--CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCE
Q 046470 498 VEEWEGAKRISLRGNRFDSLSE--IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHH 575 (888)
Q Consensus 498 ~~~~~~lr~L~l~~n~~~~l~~--~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 575 (888)
+..+ +++.+.+..+ +..++. |..+ +|+.+.+.. .++.+....|.+|++|+.++|++|.++.+|.....+.+|+.
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE 207 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence 3443 6788887654 555543 4554 688888875 68888888999999999999999999999877666899999
Q ss_pred EeccCCcccccC-cccccCCccceeccccccccCCccccccCCCCCCcEEecc
Q 046470 576 LDLSWTEITGLP-QELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLL 627 (888)
Q Consensus 576 L~L~~~~i~~Lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 627 (888)
+.+..+ ++.++ ..+.++.+|+.+++..+ +..++...+.+ .+|+.+.+.
T Consensus 208 l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 208 VLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE
T ss_pred EEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC
Confidence 999854 77774 46889999999999875 46677665666 667777663
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=7.9e-09 Score=112.01 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=55.9
Q ss_pred hhccC-CcccccchHHhcCCcccEEEcCC-CCCcccC-hhhhcccCCCEEeccCCcccccC-cccccCCccceecccccc
Q 046470 530 LLIAN-SIDEITDGFFQSMSSLRVLSLGS-NALSKLP-SGISSLVSLHHLDLSWTEITGLP-QELKALEKLRYLNLEHAY 605 (888)
Q Consensus 530 ~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-~~i~~lp-~~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~l~~~~ 605 (888)
+++++ .++.+|. +..+++|++|+|++ |.|+.+| ..|+.|.+|++|+|++|+|+.+| ..|.+|++|++|+|++|+
T Consensus 14 ~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444 4555554 55556666666664 6666554 34566666666666666666643 345666666666666664
Q ss_pred ccCCccccccCCCCCCcEEeccCCCCC
Q 046470 606 MLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 606 ~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
+ ..+|...+..++ |++|++.+|...
T Consensus 92 l-~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 L-ESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-ceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4 455554344443 666666666554
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=1.4e-08 Score=109.04 Aligned_cols=180 Identities=13% Similarity=0.117 Sum_probs=112.6
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENW 234 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~ 234 (888)
..++|++..++.+..++.. +..+.+.++|++|+||||+|+.+++... ....-...+.+..++...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~------------ 89 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT--GSMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERG------------ 89 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH--TCCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHH------------
T ss_pred HHhhCCHHHHHHHHHHHHc--CCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCc------------
Confidence 4589999999999999987 4455599999999999999999998751 111001123333331100
Q ss_pred hcCCCHHHHHHHHHHH-----h-ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecchhh-hhcc--CCcee
Q 046470 235 WKKKSPEEKAVDISSI-----L-SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSVDV-CDQM--DAEKV 303 (888)
Q Consensus 235 ~~~~~~~~~~~~l~~~-----l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~--~~~~~ 303 (888)
.......+.+. + .+++.++|+||++.. ..+..+...+.....+.++|+||....- .... ....+
T Consensus 90 -----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 90 -----INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp -----HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred -----hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 00011111111 1 256889999999864 2334343333333457788888876431 1111 11278
Q ss_pred EcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHHHHh
Q 046470 304 EVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVGRAM 357 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 357 (888)
.+.+++.++...++.+.+.......+ ++....|++.++|.|..+..+....
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999999999999987754332222 5678899999999998665554433
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=2.2e-08 Score=108.52 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=89.1
Q ss_pred EEEEecC-CCccCCCCCCCCchhhhhhcc-CCcccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEEeccCCc
Q 046470 506 RISLRGN-RFDSLSEIPTSPRLITLLLIA-NSIDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHLDLSWTE 582 (888)
Q Consensus 506 ~L~l~~n-~~~~l~~~~~~~~Lr~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 582 (888)
.++.+++ .+..+|.+..+++|+.|+|++ |.++.+++..|.++++|++|+|++|.|+.+| ..|++|.+|++|+|++|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4577777 888888888889999999996 9999999888999999999999999999885 568999999999999999
Q ss_pred ccccCcccccCCccceeccccccc
Q 046470 583 ITGLPQELKALEKLRYLNLEHAYM 606 (888)
Q Consensus 583 i~~Lp~~i~~L~~L~~L~l~~~~~ 606 (888)
|+.+|..+....+|++|++.+|.+
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cceeCHHHcccCCceEEEeeCCCc
Confidence 999987655444599999999965
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=1.4e-07 Score=100.73 Aligned_cols=179 Identities=13% Similarity=0.131 Sum_probs=110.3
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCC-EEEEEEecchHHHHHHHcCCChh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD-VVIWAAVSTLQDDIGKRIGFSEN 233 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~l~~~i~~~l~~~~~ 233 (888)
..++|++..++.+.+++.. +..+.+.++|++|+|||++|+.+++... ...+. ..+.+..+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~------------- 79 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDE------------- 79 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT--TCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTST-------------
T ss_pred HHHhCCHHHHHHHHHHHhC--CCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccc-------------
Confidence 3589999999999988876 3444489999999999999999988751 11110 1122222210
Q ss_pred hhcCCCHHHHHHHHHHH--h-ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecchh-hhhcc--CCceeEc
Q 046470 234 WWKKKSPEEKAVDISSI--L-SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSVD-VCDQM--DAEKVEV 305 (888)
Q Consensus 234 ~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~--~~~~~~l 305 (888)
.......+....+... + .+++.++|+||++.. .....+...+.....+.++|+||.... +.... ....+++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~ 158 (319)
T 2chq_A 80 -RGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (319)
T ss_dssp -TCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEEC
T ss_pred -cChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEe
Confidence 0011111222222111 1 256889999999764 233444444444445677888776543 21111 1228899
Q ss_pred CCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 306 SCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 306 ~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
.+++.++...++.+.+.......+ ++....+++.++|.+..+....
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 159 KPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999888764332222 5677889999999987654443
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.58 E-value=5.7e-07 Score=98.30 Aligned_cols=192 Identities=14% Similarity=0.153 Sum_probs=110.0
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec--chHHHHHHHc----
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS--TLQDDIGKRI---- 228 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~l~~~i~~~l---- 228 (888)
..++|++..++.+...+... ...+.+.|+|++|+||||+|+.+.+... ....+.. ..+. .-...+....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-CCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSCS---SCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCCC---CCCcccHHHHHHhccCCCce
Confidence 35899999999999998763 2245788999999999999999988762 1111100 0000 0000111000
Q ss_pred -CCChhh-hcCCCHHHHHHHHHHH-hccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecchh-hhhcc--CC
Q 046470 229 -GFSENW-WKKKSPEEKAVDISSI-LSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSVD-VCDQM--DA 300 (888)
Q Consensus 229 -~~~~~~-~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~--~~ 300 (888)
...... .......++...+... ..+++.++|+||++.. ..+..+...+.....+..+|++|.... +.... ..
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 170 (373)
T 1jr3_A 91 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (373)
T ss_dssp EEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTS
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhe
Confidence 000000 0111222222211110 1356789999999753 233334333333344666777766432 21111 12
Q ss_pred ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 301 EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 301 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
..+++.+++.++..+++.+.+.......+ .+....|++.++|.|..+..+.
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 38899999999999999887654332222 5677889999999998776654
No 164
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=4e-07 Score=95.10 Aligned_cols=167 Identities=12% Similarity=0.060 Sum_probs=100.5
Q ss_pred cccchHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhccccccC--CC--CEEEEEEec------chHHH
Q 046470 156 TVVGQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQH--HF--DVVIWAAVS------TLQDD 223 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--~f--~~~~wv~~~------~l~~~ 223 (888)
.+.|||++++++...|... ++..+.+.|+|++|+|||++|+.|.+....... .. -..+.+.+. .+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 4789999999999888652 356788999999999999999999998722111 11 134455543 57778
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHH--hccCcEEEEEccCCCccchhhhCCCCCC-CCCCcE--EEEEecchh-----
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSI--LSRKEFVLLLDDIWKPINLKDMGVPLQN-LNAGSK--IVLTTRSVD----- 293 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~~~~l~~~l~~-~~~gs~--iivTtR~~~----- 293 (888)
|++++..... ........+...+... -.++++++|||+++...+-+.+...+.. ....++ ||.++...+
T Consensus 101 I~~~L~g~~~-~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 101 IWFAISKENL-CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHHhcCCCC-CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 8888743211 0112222233222221 1456799999999865321211111110 012232 333333211
Q ss_pred ----hhhccCCceeEcCCCChHHHHHHHHHHhhc
Q 046470 294 ----VCDQMDAEKVEVSCLAHDEAWKLFQKMVER 323 (888)
Q Consensus 294 ----v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 323 (888)
+.++++...+.+.+++.+|-.+++.+++..
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 233454457899999999999999988754
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.57 E-value=1.2e-07 Score=96.71 Aligned_cols=171 Identities=11% Similarity=0.048 Sum_probs=103.0
Q ss_pred Ccccch---HHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCC
Q 046470 155 HTVVGQ---ELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFS 231 (888)
Q Consensus 155 ~~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~ 231 (888)
..++|. +..++.+..+... +..+.+.|+|++|+||||+|+.+++.. . .....+.|+.++++...+...+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~--- 99 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARA-N--ELERRSFYIPLGIHASISTALL--- 99 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEEEGGGGGGSCGGGG---
T ss_pred hhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEHHHHHHHHHHHH---
Confidence 346663 3555666665554 356789999999999999999999886 2 2233466777664332211110
Q ss_pred hhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc----hhhhCCCCCC-CCCC-cEEEEEecchh---------hhh
Q 046470 232 ENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN----LKDMGVPLQN-LNAG-SKIVLTTRSVD---------VCD 296 (888)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~g-s~iivTtR~~~---------v~~ 296 (888)
+.+ .++.+||+||++.... ...+...+.. ...+ .++|+||+... +..
T Consensus 100 -----------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~ 161 (242)
T 3bos_A 100 -----------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS 161 (242)
T ss_dssp -----------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH
T ss_pred -----------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh
Confidence 011 3467899999975421 2222111110 0112 24777776421 222
Q ss_pred ccCC-ceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 297 QMDA-EKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 297 ~~~~-~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
.+.. ..+.+.+++.++..+++.+.+.......+ ++....|++.++|.+-.+..+.
T Consensus 162 r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 162 RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 2222 37899999999999999988754332222 6778899999999876665443
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.54 E-value=1.1e-07 Score=92.97 Aligned_cols=150 Identities=16% Similarity=0.218 Sum_probs=83.2
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccC----CCCEEEEEEecchHHHHHHHcCC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQH----HFDVVIWAAVSTLQDDIGKRIGF 230 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~l~~~i~~~l~~ 230 (888)
..++||+.+++++.+.+.. ...+.+.|+|++|+|||++|+.+++....... .....+++.++.+.. ....
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 95 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA----GAKY 95 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT----TTCS
T ss_pred cccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc----cCCc
Confidence 4589999999999999977 44567889999999999999999887621100 122344444332110 0000
Q ss_pred ChhhhcCCCHHHHHHHHHHHh--ccCcEEEEEccCCCcc---------chhhhCCCCCCCCCCcEEEEEecchhhhh---
Q 046470 231 SENWWKKKSPEEKAVDISSIL--SRKEFVLLLDDIWKPI---------NLKDMGVPLQNLNAGSKIVLTTRSVDVCD--- 296 (888)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~v~~--- 296 (888)
. .........+.+.+ .+++.+|||||++... ++..+...+.. ..+..+|+||.......
T Consensus 96 -----~-~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~ 168 (195)
T 1jbk_A 96 -----R-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQYIE 168 (195)
T ss_dssp -----H-HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHHHTT
T ss_pred -----c-ccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHHHHh
Confidence 0 00111112222222 3567899999997541 11111111111 22445677766544211
Q ss_pred ---ccCCc--eeEcCCCChHHHHHHH
Q 046470 297 ---QMDAE--KVEVSCLAHDEAWKLF 317 (888)
Q Consensus 297 ---~~~~~--~~~l~~L~~~~a~~Lf 317 (888)
.+... .+.+.+++.++..+++
T Consensus 169 ~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 169 KDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred cCHHHHHHhceeecCCCCHHHHHHHh
Confidence 11111 6788888888876553
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=1.5e-08 Score=110.22 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=43.7
Q ss_pred ccceEEEEecCCCccCC-----C-C-CCCCchhhhhhccCCcccccc-hHHhcCCcccEEEcCCCCCccc-Chh----h-
Q 046470 502 EGAKRISLRGNRFDSLS-----E-I-PTSPRLITLLLIANSIDEITD-GFFQSMSSLRVLSLGSNALSKL-PSG----I- 567 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l~-----~-~-~~~~~Lr~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~~~i~~l-p~~----i- 567 (888)
+.++.|++++|.+.... . + ..+++|++|++++|.++.... .++..+++|++|+|++|.++.. ... +
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 35566666666554311 0 0 122345555555554432211 1122334455555555544421 111 1
Q ss_pred hcccCCCEEeccCCcccc-----cCcccccCCccceecccccc
Q 046470 568 SSLVSLHHLDLSWTEITG-----LPQELKALEKLRYLNLEHAY 605 (888)
Q Consensus 568 ~~L~~L~~L~L~~~~i~~-----Lp~~i~~L~~L~~L~l~~~~ 605 (888)
....+|++|+|++|.|+. ++..+..+++|++|++++|.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 123445555555554433 23333444445555555443
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.50 E-value=5.7e-07 Score=99.86 Aligned_cols=181 Identities=15% Similarity=0.178 Sum_probs=108.8
Q ss_pred ccc-chHH--HHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCCh
Q 046470 156 TVV-GQEL--LLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSE 232 (888)
Q Consensus 156 ~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~ 232 (888)
.|+ |... ....+......... ...+.|+|++|+||||||+.+++.. .....-..+++++...+..++...+...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l-~~~~~~~~v~~v~~~~~~~~~~~~~~~~- 182 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITSEKFLNDLVDSMKEG- 182 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHH-HHHCCSSCEEEEEHHHHHHHHHHHHHTT-
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEeeHHHHHHHHHHHHHcc-
Confidence 445 6433 33344444433222 6789999999999999999999876 2221122356676666655555444211
Q ss_pred hhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc----hhhhCCCCCC-CCCCcEEEEEecc---------hhhhhcc
Q 046470 233 NWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN----LKDMGVPLQN-LNAGSKIVLTTRS---------VDVCDQM 298 (888)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~ 298 (888)
.. ..+.+.+..+.-+|+|||++.... .+.+...+.. ...|..||+||.+ ..+..++
T Consensus 183 ------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~ 252 (440)
T 2z4s_A 183 ------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF 252 (440)
T ss_dssp ------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH
T ss_pred ------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc
Confidence 11 123344444678999999975421 1222212111 2346788888876 2233434
Q ss_pred CCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 299 DAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 299 ~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
... .+.+.+++.++-.+++.+.+.......+ ++....|++.++|.+-.+.-
T Consensus 253 ~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 253 QMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 333 7899999999999999988764332233 35577888899888765443
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.44 E-value=1.8e-08 Score=109.49 Aligned_cols=130 Identities=22% Similarity=0.235 Sum_probs=99.9
Q ss_pred ccceEEEEecCCCccC--CCC-CCCCchhhhhhccCCcccccchHH-----hcCCcccEEEcCCCCCcc-----cChhhh
Q 046470 502 EGAKRISLRGNRFDSL--SEI-PTSPRLITLLLIANSIDEITDGFF-----QSMSSLRVLSLGSNALSK-----LPSGIS 568 (888)
Q Consensus 502 ~~lr~L~l~~n~~~~l--~~~-~~~~~Lr~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~~~i~~-----lp~~i~ 568 (888)
.+++.|++++|.+... ..+ ..+++|+.|++++|.++......+ ...+.|++|+|++|.|+. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5799999999988642 122 235679999999999876554444 246889999999999873 566678
Q ss_pred cccCCCEEeccCCcccc-----cCcccccCCccceeccccccccCC----ccccccCCCCCCcEEeccCCCCC
Q 046470 569 SLVSLHHLDLSWTEITG-----LPQELKALEKLRYLNLEHAYMLSI----IPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 569 ~L~~L~~L~L~~~~i~~-----Lp~~i~~L~~L~~L~l~~~~~l~~----lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
.+++|++|+|++|.|+. ++..+...++|++|++++|.+... ++.. +...++|++|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA-AREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH-HHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH-HHhCCCCCEEeccCCCCC
Confidence 89999999999999875 466778889999999999976321 2222 456789999999999765
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=8.6e-07 Score=97.60 Aligned_cols=124 Identities=15% Similarity=0.213 Sum_probs=58.6
Q ss_pred cccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccCC
Q 046470 497 AVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVSL 573 (888)
Q Consensus 497 ~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L 573 (888)
.+.++.+++.+.+.. .++.++ .+..|++|+.+.+..+ ++.+....|.++..|+.+.+..+ +..+ ...+.++..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 344555666666643 344443 2455666666666533 55555555666666665554432 1111 1112222211
Q ss_pred CEEeccCCccccc-CcccccCCccceeccccccccCCccccccCCCCCCcEEecc
Q 046470 574 HHLDLSWTEITGL-PQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLL 627 (888)
Q Consensus 574 ~~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 627 (888)
...... .+..+ ...+.++.+|+.+.+..+ ...++.+.+.++++|+.+.+.
T Consensus 143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 143 EITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcC
Confidence 111111 11111 123555666666666544 244555556666666666654
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=1.6e-06 Score=93.95 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=105.7
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccc-cCCCCEEEEEEecc-----hHHHHHHHc
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHE-QHHFDVVIWAAVST-----LQDDIGKRI 228 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~~f~~~~wv~~~~-----l~~~i~~~l 228 (888)
..++|++..++.+..++.. ...+.+.++|++|+||||+|+.+.+..... ...+. ++.+..++ ...+....+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKS--ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR-ILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTC--TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS-EEEECSSSCCCHHHHTTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhc--CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc-eEEEccccccchHHHHHHHHHH
Confidence 4589999999999999876 333448999999999999999998875110 01111 22233221 001101000
Q ss_pred CCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecchh-hhhccC--Ccee
Q 046470 229 GFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRSVD-VCDQMD--AEKV 303 (888)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~--~~~~ 303 (888)
..... ...... .....-..++-+|++|+++... ....+...+.......++|++|.... +..... ...+
T Consensus 114 ~~~~~-~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 114 ARLTV-SKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHSCC-CCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hhhcc-cccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 00000 000000 0000112355699999987542 22333222322334567777665432 211111 1278
Q ss_pred EcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 304 EVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
.+.+++.++....+.+.+.......+ ++..+.|++.++|.|-.+..+.
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999987754332222 6788999999999987654443
No 172
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.30 E-value=4.1e-06 Score=89.41 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=98.3
Q ss_pred HHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHH
Q 046470 163 LLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEE 242 (888)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~ 242 (888)
....+..+..........+.|+|++|+||||||+.+++... .. -..+++++...+...+...+.. ....
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~-~~--~~~~~~i~~~~~~~~~~~~~~~-------~~~~- 90 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK-KR--GYRVIYSSADDFAQAMVEHLKK-------GTIN- 90 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH-HT--TCCEEEEEHHHHHHHHHHHHHH-------TCHH-
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH-HC--CCEEEEEEHHHHHHHHHHHHHc-------CcHH-
Confidence 34444454444322456789999999999999999998762 11 2234566666555554443321 1111
Q ss_pred HHHHHHHHhccCcEEEEEccCCCccc----hhhhCCCCCC-CCCCcEEEEEecch---------hhhhccCCc-eeEcCC
Q 046470 243 KAVDISSILSRKEFVLLLDDIWKPIN----LKDMGVPLQN-LNAGSKIVLTTRSV---------DVCDQMDAE-KVEVSC 307 (888)
Q Consensus 243 ~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~-~~~l~~ 307 (888)
.+.+.+ .+.-+|++||+..... ...+...+.. ...|..||+||.+. .+.+++... .+++.+
T Consensus 91 ---~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~ 166 (324)
T 1l8q_A 91 ---EFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL 166 (324)
T ss_dssp ---HHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC
T ss_pred ---HHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC
Confidence 122222 2467999999975431 1222111110 12456788877642 223344433 789999
Q ss_pred CChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccH
Q 046470 308 LAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLA 349 (888)
Q Consensus 308 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 349 (888)
+.++-.+++.+.+.......+ ++....|++.+ |..-.
T Consensus 167 -~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 167 -DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp -CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred -CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 999999999988764332222 56778888888 76543
No 173
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=4e-07 Score=85.81 Aligned_cols=86 Identities=14% Similarity=0.213 Sum_probs=48.0
Q ss_pred CccEEEEecCCCCCC--CchhhhccCcceEeeecccccchhcccccccccccccCccCcc----ccccceeecccccccc
Q 046470 742 SLSIVSVENCEKMKD--LTWLVFVQNLKELEISRCHAVEDIISVDKLRDISEIIGSEHNF----FAQLEALNIFNNVNLK 815 (888)
Q Consensus 742 ~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~----~p~L~~L~L~~~~~L~ 815 (888)
+|+.|++++|. +++ +..+..+++|++|+|++|..+++-.- ..+.. .++|++|+|++|++++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL------------~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL------------ERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH------------HHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH------------HHHHhcccccCCCCEEEcCCCCcCC
Confidence 56666666664 433 33455666666666666666655322 11111 2456666666666655
Q ss_pred ccCC-CCCCCCCccEEEecCCCCCCC
Q 046470 816 SIYP-NPLPFPKLKKIQIYSCPELKK 840 (888)
Q Consensus 816 ~i~~-~~~~~p~L~~L~i~~C~~L~~ 840 (888)
+-.. ....+|+|++|++++||+++.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 5221 122367777777777776665
No 174
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.23 E-value=3.6e-05 Score=79.64 Aligned_cols=195 Identities=16% Similarity=0.127 Sum_probs=102.2
Q ss_pred cccchHHHHHHHHH-------HhhcC-CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHH
Q 046470 156 TVVGQELLLYRVWK-------CITDQ-DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKR 227 (888)
Q Consensus 156 ~~vGr~~~~~~l~~-------~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~ 227 (888)
.++|....++++.. .+... ....+.+.|+|++|+|||++|+.+++.. ...| +.+..++. -
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------~ 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------M 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG------C
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH------h
Confidence 46777766666655 33221 2456789999999999999999999875 2222 22222210 0
Q ss_pred cCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCc-----------c----chhhhCCCCCCCCCCcEEEEEecch
Q 046470 228 IGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKP-----------I----NLKDMGVPLQNLNAGSKIVLTTRSV 292 (888)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~----~~~~l~~~l~~~~~gs~iivTtR~~ 292 (888)
++... ......+...+......+..+|+|||++.. . .+..+............||.||...
T Consensus 102 ~g~~~----~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 102 IGFSE----TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK 177 (272)
T ss_dssp TTCCH----HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH
T ss_pred cCCch----HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh
Confidence 11000 000111222233333467889999998642 0 1112211111122334466677766
Q ss_pred hhhhc---cCC-c-eeEcCCCCh-HHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC------ccHHHHHHHHhccC
Q 046470 293 DVCDQ---MDA-E-KVEVSCLAH-DEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL------PLALKTVGRAMKSR 360 (888)
Q Consensus 293 ~v~~~---~~~-~-~~~l~~L~~-~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~------Plai~~~~~~l~~~ 360 (888)
+.... .+. . .+.+.+++. ++...++.+.. . .+ .+....|++.+.|. +-++..+-.+.. .
T Consensus 178 ~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~--~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~ 248 (272)
T 1d2n_A 178 DVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N--FK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-M 248 (272)
T ss_dssp HHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C--SC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-S
T ss_pred hhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C--CC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-h
Confidence 44322 121 2 788999988 66666665531 1 11 56788899999884 333333332222 2
Q ss_pred CChhHHHHHHHHHHh
Q 046470 361 SNIGDWKRAIKKIRT 375 (888)
Q Consensus 361 ~~~~~w~~~~~~l~~ 375 (888)
.....+..+++.+..
T Consensus 249 ~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 249 DPEYRVRKFLALLRE 263 (272)
T ss_dssp CGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 234456665555544
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=5.5e-06 Score=86.63 Aligned_cols=178 Identities=16% Similarity=0.168 Sum_probs=101.8
Q ss_pred CcccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
..++|.+..++++.+.+... -...+.+.|+|++|+|||++|+.+++.. ... .+.+..+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~~ 90 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVKK 90 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCCC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHHh
Confidence 46899999999998887431 1345678999999999999999998876 222 233333322110
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc----------------chhhhCCCCC--CCCCCcEE
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI----------------NLKDMGVPLQ--NLNAGSKI 285 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~gs~i 285 (888)
+...........+......++.+|+|||++... .+..+...+. ....+..|
T Consensus 91 -----------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 159 (285)
T 3h4m_A 91 -----------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI 159 (285)
T ss_dssp -----------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEE
T ss_pred -----------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 001111122222333334567899999996420 1111111111 12235667
Q ss_pred EEEecchhh-----hhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCC-CccHHHHH
Q 046470 286 VLTTRSVDV-----CDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGG-LPLALKTV 353 (888)
Q Consensus 286 ivTtR~~~v-----~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~ 353 (888)
|.||...+. .+..... .+.+...+.++..+++...+......... ....+++.+.| .|-.+..+
T Consensus 160 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 160 IGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV----NLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp EEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHHCTTCCHHHHHHH
T ss_pred EEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC----CHHHHHHHcCCCCHHHHHHH
Confidence 777765432 1111222 78999999999999999887544322222 24667777777 44344433
No 176
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.19 E-value=6.7e-06 Score=87.10 Aligned_cols=153 Identities=12% Similarity=0.166 Sum_probs=88.1
Q ss_pred cccchHHHHHHHHHHhhc-------------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCC--EEEEEEecch
Q 046470 156 TVVGQELLLYRVWKCITD-------------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD--VVIWAAVSTL 220 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~l 220 (888)
.++|.+..++.+.+.+.. .......+.|+|++|+|||++|+.+++.. ....... ..+.+..+.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL-HRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH-HHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HhcCCcCCCcEEEEcHHHh
Confidence 478998888888766541 02345578999999999999999988876 2222111 2233333222
Q ss_pred HHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCc-----------cchhhhCCCCCCCCCCcEEEEEe
Q 046470 221 QDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKP-----------INLKDMGVPLQNLNAGSKIVLTT 289 (888)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTt 289 (888)
... +...........+.. .+.-+|+|||++.. .....+...+.....+..||.||
T Consensus 111 ~~~-----------~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 111 VGQ-----------YIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp CCS-----------STTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred hhh-----------cccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 100 011111112222222 24569999999833 22233333333344566778877
Q ss_pred cchh----------hhhccCCceeEcCCCChHHHHHHHHHHhhcc
Q 046470 290 RSVD----------VCDQMDAEKVEVSCLAHDEAWKLFQKMVERS 324 (888)
Q Consensus 290 R~~~----------v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~ 324 (888)
.... +.++++ ..+.+.+++.++-..++...+...
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIA-HHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEE-EEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHhhCHHHHHhCC-eEEEcCCcCHHHHHHHHHHHHHHc
Confidence 6432 222211 378999999999999998887543
No 177
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.19 E-value=2.1e-05 Score=85.57 Aligned_cols=189 Identities=16% Similarity=0.124 Sum_probs=100.1
Q ss_pred CcccchHHHHHH---HHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----------chH
Q 046470 155 HTVVGQELLLYR---VWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS----------TLQ 221 (888)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----------~l~ 221 (888)
..++|++..++. +.+.+.......+.+.|+|++|+|||++|+.+++.. . .... .+.+... ...
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~--~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-G--PDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-C--SSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-c--ccCC-cccccchhhhhcccchhHHH
Confidence 468999988766 445554432234689999999999999999999887 2 2111 1222211 111
Q ss_pred HHHHHH-cCC--------------------Chh-------hhcCCCHHHHHHHHHHHh-----ccC----cEEEEEccCC
Q 046470 222 DDIGKR-IGF--------------------SEN-------WWKKKSPEEKAVDISSIL-----SRK----EFVLLLDDIW 264 (888)
Q Consensus 222 ~~i~~~-l~~--------------------~~~-------~~~~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv~ 264 (888)
...... .+. ... .........+...+.+.. .++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 111111 000 000 000001222222222222 233 3599999998
Q ss_pred Cc--cchhhhCCCCCCCCCCcEEEEEecc-----------------hhhhhccCCceeEcCCCChHHHHHHHHHHhhccc
Q 046470 265 KP--INLKDMGVPLQNLNAGSKIVLTTRS-----------------VDVCDQMDAEKVEVSCLAHDEAWKLFQKMVERST 325 (888)
Q Consensus 265 ~~--~~~~~l~~~l~~~~~gs~iivTtR~-----------------~~v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~ 325 (888)
.. .....+...+...... .++++|.. ..+.+++ ..+.+.+++.++..+++.+.+....
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL--LIVSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE--EEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc--cEEEecCCCHHHHHHHHHHHHHHcC
Confidence 64 2222222222222222 34444431 1222222 2579999999999999998876533
Q ss_pred CCCCCChHHHHHHHHHHhC-CCccHHHHH
Q 046470 326 LDSHASIPELAKTLARECG-GLPLALKTV 353 (888)
Q Consensus 326 ~~~~~~~~~~~~~i~~~c~-g~Plai~~~ 353 (888)
...+ ++....|++.+. |.|-.+..+
T Consensus 277 ~~~~---~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 277 VEMS---EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp CCBC---HHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCC---HHHHHHHHHHhcCCCHHHHHHH
Confidence 2222 577888999997 777655443
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.18 E-value=9.3e-06 Score=89.85 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=100.5
Q ss_pred CcccchHHHH---HHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCC
Q 046470 155 HTVVGQELLL---YRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGF 230 (888)
Q Consensus 155 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~ 230 (888)
..++|.+..+ ..+...+.. ...+.+.++|++|+||||+|+.+++.. ...|. -+... .-..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~--~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f~---~l~a~~~~~~-------- 89 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYA---NADVE---RISAVTSGVK-------- 89 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH--TCCCEEEEECSTTSSHHHHHHHHHHHT---TCEEE---EEETTTCCHH--------
T ss_pred HHhCCcHHHHhchHHHHHHHHc--CCCcEEEEECCCCCcHHHHHHHHHHHh---CCCeE---EEEeccCCHH--------
Confidence 4589999888 677777776 456789999999999999999999876 22221 12211 0000
Q ss_pred ChhhhcCCCHHHHHHHHHH-HhccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEE-Eecchh--hhhcc--CCce
Q 046470 231 SENWWKKKSPEEKAVDISS-ILSRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVL-TTRSVD--VCDQM--DAEK 302 (888)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~--v~~~~--~~~~ 302 (888)
+..+....... ...+++.+|+||+++.. ...+.+...+.. ....+|. ||.+.. +.... ...+
T Consensus 90 --------~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 90 --------EIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp --------HHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred --------HHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeE
Confidence 01111111111 12467899999999764 222332222222 1233333 555532 21111 1227
Q ss_pred eEcCCCChHHHHHHHHHHhhcccC----CCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 303 VEVSCLAHDEAWKLFQKMVERSTL----DSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 303 ~~l~~L~~~~a~~Lf~~~~~~~~~----~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
+.+.+++.++...++.+.+..... ....--++..+.|++.++|.+-.+..+
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 889999999999999988754110 000112567788999999987655444
No 179
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.18 E-value=1.3e-05 Score=86.18 Aligned_cols=171 Identities=15% Similarity=0.143 Sum_probs=102.4
Q ss_pred CcccchHHHHHHHHHHhhcC---CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCC
Q 046470 155 HTVVGQELLLYRVWKCITDQ---DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFS 231 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~ 231 (888)
..++|++..++++..++... ....+.|.|+|++|+|||++|+.+++.. ...| +.+..+.+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~----------- 91 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMI----------- 91 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGC-----------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhc-----------
Confidence 46899999999998888642 2445678999999999999999998775 2222 22332211
Q ss_pred hhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--chhhhCCCCCC------------------CCCCcEEEEEecc
Q 046470 232 ENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--NLKDMGVPLQN------------------LNAGSKIVLTTRS 291 (888)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~------------------~~~gs~iivTtR~ 291 (888)
.........+.. ..+..+|+||+++... ....+...+.. ..++..+|.||..
T Consensus 92 ------~~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~ 163 (338)
T 3pfi_A 92 ------EKSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR 163 (338)
T ss_dssp ------CSHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESC
T ss_pred ------cchhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCC
Confidence 011111111111 2456789999987541 11111111100 0113456665554
Q ss_pred hh-----hhhccCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 292 VD-----VCDQMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 292 ~~-----v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
.. +..++ ...+.+.+++.++...++.+.+.......+ .+....|++.+.|.|-.+..+.
T Consensus 164 ~~~l~~~L~~R~-~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 164 AGMLSNPLRDRF-GMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp GGGSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred ccccCHHHHhhc-CEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHH
Confidence 32 22222 137899999999999999988764331112 5677889999999985554443
No 180
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=9.4e-07 Score=83.24 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=64.7
Q ss_pred CCcceEEeecCCcceeeecCCccccccccccCCCccEEEEecCCCCCC--Cchhhh----ccCcceEeeecccccchhcc
Q 046470 709 ENLQELHLEDSDLEEMRIDGPEEVKKLFQSGFRSLSIVSVENCEKMKD--LTWLVF----VQNLKELEISRCHAVEDIIS 782 (888)
Q Consensus 709 ~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~----l~~L~~L~L~~c~~l~~l~~ 782 (888)
.+|++|+++++.+++.....+ ..+++|++|+|++|..+++ +..+.. .++|++|+|++|..+++-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L--------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM--------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG--------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHh--------cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 468888888866654333222 2588999999999987776 334554 35799999999998887533
Q ss_pred cccccccccccCccCccccccceeecccccccccc
Q 046470 783 VDKLRDISEIIGSEHNFFAQLEALNIFNNVNLKSI 817 (888)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i 817 (888)
..+..+|+|++|+|++|+.++..
T Consensus 133 ------------~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 ------------IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ------------HHGGGCTTCCEEEEESCTTCCCH
T ss_pred ------------HHHhcCCCCCEEECCCCCCCCch
Confidence 24557899999999999888764
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=1.1e-05 Score=91.59 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=105.5
Q ss_pred CcccchHHHHHHHHHHhhcC---------------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecc
Q 046470 155 HTVVGQELLLYRVWKCITDQ---------------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVST 219 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 219 (888)
..++|++..++++.+++... .+..+.+.|+|++|+||||+|+.+++.. . + .++.+..++
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 45899999999999998641 0134789999999999999999998875 1 2 234444441
Q ss_pred -----hHHHHHHHcCCChhhhcCCCHHHHHHHHHH--HhccCcEEEEEccCCCccc-----hhhhCCCCCCCCCCcEEEE
Q 046470 220 -----LQDDIGKRIGFSENWWKKKSPEEKAVDISS--ILSRKEFVLLLDDIWKPIN-----LKDMGVPLQNLNAGSKIVL 287 (888)
Q Consensus 220 -----l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~iiv 287 (888)
+....+..... ............+ ...+++.+||+|+++.... +..+...+.. .+..||+
T Consensus 113 ~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIl 184 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALD------NMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLIL 184 (516)
T ss_dssp CCCHHHHHHTGGGGTT------BCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEE
T ss_pred cchHHHHHHHHHHHhc------cccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEE
Confidence 11111111100 0000000000000 1235788999999975421 1222211111 2334555
Q ss_pred Eecchh---hhhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCC-CccHHHHHHH
Q 046470 288 TTRSVD---VCDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGG-LPLALKTVGR 355 (888)
Q Consensus 288 TtR~~~---v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~~ 355 (888)
++.... +....... .+.+.+++.++..+.+.+.+.......+ ++....|++.++| ++-++..+..
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 554422 22222222 7899999999999999887765432333 3557889999999 4455555543
No 182
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=7.9e-07 Score=90.55 Aligned_cols=107 Identities=23% Similarity=0.278 Sum_probs=74.3
Q ss_pred CCCCCchhh--hhhccCCccccc---chHHhcCCcccEEEcCCCCCccc---ChhhhcccCCCEEeccCCcccccCcccc
Q 046470 520 IPTSPRLIT--LLLIANSIDEIT---DGFFQSMSSLRVLSLGSNALSKL---PSGISSLVSLHHLDLSWTEITGLPQELK 591 (888)
Q Consensus 520 ~~~~~~Lr~--L~l~~n~l~~~~---~~~~~~l~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~i~~Lp~~i~ 591 (888)
+...+.|.. +++..|....++ .....++++|+.|+|++|.|+.+ |..++.+++|++|+|++|.|+.+ ..+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence 444555665 555666433222 22235788999999999988865 46677899999999999998887 3355
Q ss_pred cCC--ccceeccccccccCCccc------cccCCCCCCcEEecc
Q 046470 592 ALE--KLRYLNLEHAYMLSIIPH------QLISGFSKLEVLRLL 627 (888)
Q Consensus 592 ~L~--~L~~L~l~~~~~l~~lp~------~~i~~L~~L~~L~l~ 627 (888)
.+. +|++|++++|.+...+|. .++..+++|+.|+-.
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 555 899999999987655552 235677888887654
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.14 E-value=1.9e-05 Score=85.15 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=103.3
Q ss_pred CcccchHHHHHHHHHHhhc----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCITD----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
..++|.+..++.+.+.+.. .....+.|.|+|++|+|||++|+.+++.. .. ..+.+..+.+....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSKW 157 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhccc
Confidence 4589999999998887742 11345678999999999999999998875 22 23445554322100
Q ss_pred HHHcCCChhhhcCCCHHHHHHHH-HHHhccCcEEEEEccCCCcc-------------chhhhCCCCC----CCCCCcEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDI-SSILSRKEFVLLLDDIWKPI-------------NLKDMGVPLQ----NLNAGSKIV 286 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~----~~~~gs~ii 286 (888)
.. ........+ ...-..++.+|+||+++... ....+...+. ....+..||
T Consensus 158 -----------~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI 225 (357)
T 3d8b_A 158 -----------VG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVV 225 (357)
T ss_dssp -----------TT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEE
T ss_pred -----------cc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEE
Confidence 00 111122222 22224567899999995320 0111111111 112344555
Q ss_pred EEecchh-----hhhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCC-CccHHHHHHH
Q 046470 287 LTTRSVD-----VCDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGG-LPLALKTVGR 355 (888)
Q Consensus 287 vTtR~~~-----v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~~ 355 (888)
.||.... +.+ ... .+.+...+.++..+++...+....... -.+....|++.+.| .+-.+..+..
T Consensus 226 ~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 226 GATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665432 222 222 678888899999999888765432111 15677889999998 4555655543
No 184
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.13 E-value=1.3e-05 Score=88.21 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=84.3
Q ss_pred CcccccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCccc-ChhhhcccC
Q 046470 496 PAVEEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKL-PSGISSLVS 572 (888)
Q Consensus 496 ~~~~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~ 572 (888)
..+.++.+++.+.+..+ +..++ .+..|..|+.+.+..+ +..+....|.++..+....... +..+ ...+.++.+
T Consensus 88 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~ 163 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCES 163 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTT
T ss_pred hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCcc--ccccchhhhcccCC
Confidence 35667888999988654 55444 3677888888776544 6666666677776554443333 2223 345778888
Q ss_pred CCEEeccCCcccccC-cccccCCccceeccccccccCCccccccCCCCCCcEEeccCC
Q 046470 573 LHHLDLSWTEITGLP-QELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGC 629 (888)
Q Consensus 573 L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 629 (888)
|+.+.+..+ +..++ ..+.++.+|+.+++..+ +..++...+.++.+|+.+.+..+
T Consensus 164 L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 164 LEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred CcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC
Confidence 888888754 34443 34777888888888765 46666666778888887776543
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.12 E-value=1.3e-05 Score=85.38 Aligned_cols=169 Identities=9% Similarity=0.089 Sum_probs=101.3
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhh
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENW 234 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~ 234 (888)
..++|.+..++.+.+++... ...+++.+.|++|+|||++|+.+++.. . ...+.++.+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~--------------- 83 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSD--------------- 83 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTT---------------
T ss_pred HHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEcccc---------------
Confidence 46899999999999999863 234677888889999999999998875 1 1233444331
Q ss_pred hcCCCHHHHHHHHHHHhc-----cCcEEEEEccCCCcc---chhhhCCCCCCCCCCcEEEEEecchh-h----hhccCCc
Q 046470 235 WKKKSPEEKAVDISSILS-----RKEFVLLLDDIWKPI---NLKDMGVPLQNLNAGSKIVLTTRSVD-V----CDQMDAE 301 (888)
Q Consensus 235 ~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtR~~~-v----~~~~~~~ 301 (888)
.....+...+.+... +++.+||+||++... ....+...+.....+.++|+||.... + .+++ .
T Consensus 84 ---~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~--~ 158 (324)
T 3u61_B 84 ---CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC--R 158 (324)
T ss_dssp ---CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS--E
T ss_pred ---cCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC--c
Confidence 112222223333322 367899999998653 23333222222234567887776543 1 1221 2
Q ss_pred eeEcCCCChHHHHHHH-------HHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHH
Q 046470 302 KVEVSCLAHDEAWKLF-------QKMVERSTLDSHASIPELAKTLARECGGLPLALKT 352 (888)
Q Consensus 302 ~~~l~~L~~~~a~~Lf-------~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 352 (888)
.+++.+++.++-.+++ .+.+.......++ .+....|++.++|.+-.+..
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 7899999988854332 2223322212211 27788899999887764433
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=4e-06 Score=90.21 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=38.2
Q ss_pred cCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhh--cCCCCce
Q 046470 586 LPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELL--GLKHLNF 663 (888)
Q Consensus 586 Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~L~~L~~ 663 (888)
++..+..+++|+.|++++|.. ..+|. + .+++|++|++..|... ...+..+. .+++|+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~-l~l~~--~-~~~~L~~L~L~~~~l~----------------~~~l~~l~~~~lp~L~~ 223 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNN-LSIGK--K-PRPNLKSLEIISGGLP----------------DSVVEDILGSDLPNLEK 223 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBT-CBCCS--C-BCTTCSEEEEECSBCC----------------HHHHHHHHHSBCTTCCE
T ss_pred HHHHHhcCCCCcEEEEeCCCC-ceecc--c-cCCCCcEEEEecCCCC----------------hHHHHHHHHccCCCCcE
Confidence 444456677788888877632 23443 3 3778888888766543 12333443 5777777
Q ss_pred EEEEE
Q 046470 664 LSWSF 668 (888)
Q Consensus 664 L~l~~ 668 (888)
|+++.
T Consensus 224 L~L~~ 228 (362)
T 2ra8_A 224 LVLYV 228 (362)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77753
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.12 E-value=3.3e-05 Score=82.04 Aligned_cols=179 Identities=16% Similarity=0.100 Sum_probs=103.2
Q ss_pred CcccchHHHHHHHHHHhh----------cCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCIT----------DQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
..++|.+..++.+.+.+. ......+-|.++|++|+|||++|+++++.. ... .+.++.+.+...
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~~l~~~- 90 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSSDLVSK- 90 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHHHHHTT-
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchHHHhhc-
Confidence 458999999999988772 111234678999999999999999998875 222 233433332111
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc-------------hhhhCCC---CCCCCCCcEEEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN-------------LKDMGVP---LQNLNAGSKIVLT 288 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~gs~iivT 288 (888)
. .......+...+...-..++.+|+||+++.... ...+... +.....+..||.|
T Consensus 91 ---~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~a 160 (322)
T 3eie_A 91 ---W-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 160 (322)
T ss_dssp ---T-------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEE
T ss_pred ---c-------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEe
Confidence 0 111111222222233345678999999974311 1111111 1112334555657
Q ss_pred ecchhh-----hhccCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC-ccHHHHHH
Q 046470 289 TRSVDV-----CDQMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL-PLALKTVG 354 (888)
Q Consensus 289 tR~~~v-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 354 (888)
|..... .+++. ..+.+...+.++-.+++...+....... -......|++.+.|. +-.|..+.
T Consensus 161 tn~~~~ld~al~~Rf~-~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 161 TNIPWQLDSAIRRRFE-RRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp ESCGGGSCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCChhhCCHHHHcccC-eEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 665322 22211 2677888999999999998876432111 245678888988874 44454443
No 188
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=7.8e-06 Score=88.46 Aligned_cols=194 Identities=11% Similarity=0.123 Sum_probs=101.4
Q ss_pred CcccchHHHHHHHHHHh-hcCCCCceEEEEEcCCCCcHHHHHHHHHhcccc-ccC--CCCEEEEEEecchHHHHH-----
Q 046470 155 HTVVGQELLLYRVWKCI-TDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCH-EQH--HFDVVIWAAVSTLQDDIG----- 225 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~--~f~~~~wv~~~~l~~~i~----- 225 (888)
..++|.+..++.+.+++ .. +..+.+.|+|+.|+||||+|+.++..... ..+ .++...|.........+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~--~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP--RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT--TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 45899999999988888 44 33333899999999999999999885311 011 011100100000000000
Q ss_pred --HHcCCChhhhcCCCHHHHHHHHHHH--------------hccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEE
Q 046470 226 --KRIGFSENWWKKKSPEEKAVDISSI--------------LSRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVL 287 (888)
Q Consensus 226 --~~l~~~~~~~~~~~~~~~~~~l~~~--------------l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv 287 (888)
-.+.... ............+.+. +.+++-++|||++.... ....+...+.....+..+|+
T Consensus 92 ~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il 169 (354)
T 1sxj_E 92 YHLEITPSD--MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIM 169 (354)
T ss_dssp SEEEECCC------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEE
T ss_pred ceEEecHhh--cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEE
Confidence 0000000 0000100111122221 13366799999998632 12222222222234667777
Q ss_pred Eecch-hhhhccC--CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHHH
Q 046470 288 TTRSV-DVCDQMD--AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTVG 354 (888)
Q Consensus 288 TtR~~-~v~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 354 (888)
+|.+. .+..... ...+++.+++.++..+.+.+.+.......+ -++....|++.++|.+-.+..+.
T Consensus 170 ~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 170 VCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 77653 2221111 137899999999999999988754331111 03567889999999886655544
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.10 E-value=9.9e-05 Score=78.19 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=102.8
Q ss_pred CcccchHHHHHHHHHHhhc---------C-CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCITD---------Q-DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.+++|.+..++.+.+.+.- . ....+.|.++|++|+|||++|+++++.. . .. ..+.+..+.+...
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~~- 85 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVSK- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCCS-
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHhh-
Confidence 4689999888888776631 0 1234678999999999999999999875 1 11 2233444432210
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--------c-----hhhhCCCC---CCCCCCcEEEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--------N-----LKDMGVPL---QNLNAGSKIVLT 288 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l---~~~~~gs~iivT 288 (888)
+.......+...+...-..++.+|++|+++... . ...+...+ .....+..||.|
T Consensus 86 ----------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~a 155 (322)
T 1xwi_A 86 ----------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 155 (322)
T ss_dssp ----------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEE
T ss_pred ----------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEe
Confidence 112222223333333334678999999997531 0 01111111 111234445556
Q ss_pred ecchh-----hhhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC-ccHHHHHH
Q 046470 289 TRSVD-----VCDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL-PLALKTVG 354 (888)
Q Consensus 289 tR~~~-----v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 354 (888)
|.... +.+ ... .+.+...+.++-.+++...+....... -......|++.+.|. +-.|..+.
T Consensus 156 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 156 TNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp ESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred cCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 65432 222 223 678888899999999988775432111 246678899999886 44455544
No 190
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.06 E-value=3.1e-05 Score=79.66 Aligned_cols=180 Identities=17% Similarity=0.165 Sum_probs=98.6
Q ss_pred CcccchHHHHHHHHHHhh---cCC-------CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCIT---DQD-------KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.+++|.+..++.+.+++. ... ...+.+.++|++|+|||++|+.+++.. ... .+.+..+.+...
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhh-
Confidence 458999888777765542 211 234568899999999999999999876 222 234444432110
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--------------c---hhhhCCCCCC--CCCCcEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--------------N---LKDMGVPLQN--LNAGSKI 285 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~---~~~l~~~l~~--~~~gs~i 285 (888)
. .......+...+.......+.+|+|||++... . +..+...+.. ...+..|
T Consensus 79 ---~-------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 148 (262)
T 2qz4_A 79 ---I-------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIV 148 (262)
T ss_dssp ---S-------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEE
T ss_pred ---c-------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEE
Confidence 0 11111222223333334567999999997530 0 1111111111 1234556
Q ss_pred EEEecchhhh-hc-c---CCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc-HHHHH
Q 046470 286 VLTTRSVDVC-DQ-M---DAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL-ALKTV 353 (888)
Q Consensus 286 ivTtR~~~v~-~~-~---~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 353 (888)
|.||...... .. . ... .+.+...+.++-.+++...+...... .........+++.+.|.+- .|..+
T Consensus 149 i~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 149 LASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 6666553321 11 1 122 67889999999999998877543311 1122234778888888754 44443
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.02 E-value=8.1e-05 Score=80.05 Aligned_cols=178 Identities=17% Similarity=0.092 Sum_probs=101.9
Q ss_pred CcccchHHHHHHHHHHhhc----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCITD----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
..++|.+..++.+.+.+.. .....+-|.++|++|+|||++|+++++.. ... .+.+..+++...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~~l~~~- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSSDLVSK- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHHHHHSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHHHHhhh-
Confidence 4589999999888887631 11223458899999999999999999876 222 233433332211
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccc-------------hhhhCCCC---CCCCCCcEEEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPIN-------------LKDMGVPL---QNLNAGSKIVLT 288 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~gs~iivT 288 (888)
. .......+...+...-..++.+|+||+++.... ...+...+ .....+..||.|
T Consensus 124 ---~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a 193 (355)
T 2qp9_X 124 ---W-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193 (355)
T ss_dssp ---C----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEE
T ss_pred ---h-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEee
Confidence 0 111222222222333345789999999975310 11111111 111234555556
Q ss_pred ecchh-----hhhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC-ccHHHHHH
Q 046470 289 TRSVD-----VCDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL-PLALKTVG 354 (888)
Q Consensus 289 tR~~~-----v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 354 (888)
|.... +.+ ... .+.+...+.++-.+++...+....... -......|++.+.|. +-.|..+.
T Consensus 194 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 194 TNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp ESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 65432 223 223 678888899999999988775432111 145678899999884 44455444
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.02 E-value=0.00011 Score=80.17 Aligned_cols=179 Identities=14% Similarity=0.126 Sum_probs=100.8
Q ss_pred CcccchHHHHHHHHHHhhc----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCITD----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
..++|.+..++.+.+++.. .....+.|.|+|++|+|||++|+.+++.. .. ..+.+..+.+....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTSKY 188 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhccc
Confidence 4689999999999888732 01234678999999999999999998775 22 23344444333211
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--------c-----hhhhCCCC---CC-CCCCcEEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--------N-----LKDMGVPL---QN-LNAGSKIVL 287 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l---~~-~~~gs~iiv 287 (888)
. ......+...+...-..++.+|+||+++... . ...+...+ .. ......||.
T Consensus 189 ~-----------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 189 V-----------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp --------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred c-----------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 1 1112222222223334566899999996430 0 01111111 01 122344555
Q ss_pred Eecchh-----hhhccCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc-HHHHHH
Q 046470 288 TTRSVD-----VCDQMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL-ALKTVG 354 (888)
Q Consensus 288 TtR~~~-----v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 354 (888)
||.... +.+++. ..+.+...+.++-.+++...+....... ..+....|++.+.|..- +|..+.
T Consensus 258 atn~~~~l~~~l~~R~~-~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 258 ATNRPQELDEAVLRRFI-KRVYVSLPNEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EESCGGGCCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ecCCchhcCHHHHcCcc-eEEEcCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 665422 222211 2678888999999999988875432111 25677889999988554 554443
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.99 E-value=1.6e-05 Score=77.00 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=40.2
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++||+.+++.+.+.+.. ...+.+.|+|++|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999976 445677899999999999999998876
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=2.3e-05 Score=84.09 Aligned_cols=171 Identities=13% Similarity=0.205 Sum_probs=100.9
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCC-EEEEEEecchHHHHHHHcCCChhh
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD-VVIWAAVSTLQDDIGKRIGFSENW 234 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~l~~~i~~~l~~~~~~ 234 (888)
.++|.+..++.+...+.. ++.+.+.++|+.|+||||+|+.+++... ...+. .+.-+..+
T Consensus 26 ~~~g~~~~~~~L~~~i~~--g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~---------------- 85 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDE--GKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNAS---------------- 85 (340)
T ss_dssp GCCSCHHHHHHHHHHHHT--TCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTT----------------
T ss_pred HhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCc----------------
Confidence 468999888888888876 4444489999999999999999988751 11110 01111111
Q ss_pred hcCCCHHHHHHHHHHHh------ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecchh-hhhcc--CCcee
Q 046470 235 WKKKSPEEKAVDISSIL------SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSVD-VCDQM--DAEKV 303 (888)
Q Consensus 235 ~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~--~~~~~ 303 (888)
.....+.....+..+. .+.+-++|+|+++.. .....+...+.......++|++|.... +.... ....+
T Consensus 86 -~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 86 -DDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp -SCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred -ccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 1112233333333322 234679999999753 222223222222234566776665432 21111 12278
Q ss_pred EcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHH
Q 046470 304 EVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLAL 350 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 350 (888)
.+.+++.++..+.+.+.+.......+ ++..+.|++.++|.+--+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 89999999999988877643221222 567788999999987643
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.97 E-value=0.00019 Score=79.71 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=100.9
Q ss_pred CcccchHHHHHHHHHHhhc----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCITD----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.+++|.+..++.+.+.+.. .....+.|.++|++|+|||++|+.+++.. .. ...+.++.+.+....
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~--~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSISSSDLVSKW 208 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CS--SEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CC--CCEEEEeHHHHHhhh
Confidence 4589999999888887631 01234678999999999999999999875 11 122334444433221
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc-------------chhhhCCCCCC---CCCCcEEEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI-------------NLKDMGVPLQN---LNAGSKIVLT 288 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~~---~~~gs~iivT 288 (888)
. +. .......+ +...-..++.+|+||+++... ....+...+.. ...+..||.|
T Consensus 209 ~---g~-----~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~a 277 (444)
T 2zan_A 209 L---GE-----SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 277 (444)
T ss_dssp -----------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEE
T ss_pred c---ch-----HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEec
Confidence 1 10 11122222 222224578899999997531 01112222211 2345566666
Q ss_pred ecchh-----hhhccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC-ccHHHHHH
Q 046470 289 TRSVD-----VCDQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL-PLALKTVG 354 (888)
Q Consensus 289 tR~~~-----v~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 354 (888)
|.... +.+ ... .+.+...+.++-..+|...+....... -......|++.+.|. +-.|..+.
T Consensus 278 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 278 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp ESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 65432 222 222 677888888888889888765432111 145678899999884 44555444
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.96 E-value=0.00015 Score=75.98 Aligned_cols=178 Identities=13% Similarity=0.145 Sum_probs=101.5
Q ss_pred CcccchHHHHHHHHHHhhcC----------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ----------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
..++|.+..++.+.+.+... ....+.+.|+|++|+||||+|+.+++.. .. ..+.+..+.+...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~~- 93 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTSK- 93 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSSS-
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhhc-
Confidence 46899999999988877321 1234678999999999999999998875 22 2233444322110
Q ss_pred HHHcCCChhhhcCCCHHHHHHH-HHHHhccCcEEEEEccCCCccc-------------hhhhC---CCCCC--CCCCcEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVD-ISSILSRKEFVLLLDDIWKPIN-------------LKDMG---VPLQN--LNAGSKI 285 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~---~~l~~--~~~gs~i 285 (888)
+.. ........ +......++.+|++|+++.... ...+. ..++. .+.+..|
T Consensus 94 ----------~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 94 ----------YVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp ----------SCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred ----------ccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 011 12222222 2233345778999999965310 00110 01111 1133455
Q ss_pred EEEecchh-----hhhccCCceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCcc-HHHHHH
Q 046470 286 VLTTRSVD-----VCDQMDAEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPL-ALKTVG 354 (888)
Q Consensus 286 ivTtR~~~-----v~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 354 (888)
|.||.... +.+.+. ..+.+...+.++-..++...+....... -.+....|++.+.|.+- ++..+.
T Consensus 163 i~~tn~~~~l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 163 LAATNRPQELDEAALRRFT-KRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEESCGGGBCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCChhhCCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666532 233222 2567777788888888887765432111 14567889999999875 554443
No 197
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.96 E-value=0.00016 Score=79.39 Aligned_cols=119 Identities=11% Similarity=0.182 Sum_probs=68.2
Q ss_pred cceEEEEecCCCccCC--CCCCCCchhhhhhccCC---cccccchHHhcCCcccEEEcCCCCCcccC-hhhhcccCCCEE
Q 046470 503 GAKRISLRGNRFDSLS--EIPTSPRLITLLLIANS---IDEITDGFFQSMSSLRVLSLGSNALSKLP-SGISSLVSLHHL 576 (888)
Q Consensus 503 ~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L 576 (888)
.++.+.+.. .++.+. .|..|.+|+.+.+..+. ++.+....|.++..|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 366666653 244443 35677777777776543 66666666777777776666543 34442 345667777777
Q ss_pred eccCCcccccC-cccccCCccceeccccccccCCccccccCCCCCCcEEecc
Q 046470 577 DLSWTEITGLP-QELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLL 627 (888)
Q Consensus 577 ~L~~~~i~~Lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 627 (888)
.+..+ +..++ ..+..+.+|+.+.+..+ +..+....+.+ .+|+.+.+.
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip 190 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIP 190 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEEC
T ss_pred cccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEEC
Confidence 77543 33332 34566667777766554 24444443433 456666554
No 198
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=7.5e-06 Score=79.23 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=63.0
Q ss_pred HhcCCcccEEEcCCC-CCc-----ccChhhhcccCCCEEeccCCcccc-----cCcccccCCccceeccccccccCC---
Q 046470 544 FQSMSSLRVLSLGSN-ALS-----KLPSGISSLVSLHHLDLSWTEITG-----LPQELKALEKLRYLNLEHAYMLSI--- 609 (888)
Q Consensus 544 ~~~l~~L~~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~i~~-----Lp~~i~~L~~L~~L~l~~~~~l~~--- 609 (888)
+...+.|++|+|++| .|. .+...+....+|++|+|++|.|.. +...+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455666666666666 554 233445555666666666666654 344455556666666666654221
Q ss_pred -ccccccCCCCCCcEEec--cCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEechh
Q 046470 610 -IPHQLISGFSKLEVLRL--LGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSSL 672 (888)
Q Consensus 610 -lp~~~i~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 672 (888)
+... +...++|++|++ .+|.+... ........+...++|+.|+++.+...
T Consensus 112 ~l~~~-L~~n~~L~~L~L~~~~N~i~~~------------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEA-LQSNTSLIELRIDNQSQPLGNN------------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHG-GGGCSSCCEEECCCCSSCCCHH------------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-HHhCCCceEEEecCCCCCCCHH------------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2222 455566777777 55554311 01112334555566777777665543
No 199
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.88 E-value=5e-06 Score=89.44 Aligned_cols=132 Identities=11% Similarity=0.158 Sum_probs=83.4
Q ss_pred cccccceEEEEecCCCccCCCCCCCCchhhhhhccCCcccccchHHh--cCCcccEEEcCCC--C------CcccChhh-
Q 046470 499 EEWEGAKRISLRGNRFDSLSEIPTSPRLITLLLIANSIDEITDGFFQ--SMSSLRVLSLGSN--A------LSKLPSGI- 567 (888)
Q Consensus 499 ~~~~~lr~L~l~~n~~~~l~~~~~~~~Lr~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~~--~------i~~lp~~i- 567 (888)
..+++++.|++.++.-..++.+ .+++|+.|.+..|.+.......+. .+++|+.|+|+.+ . +..+...+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred hcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 3456888898887742334443 378888888888776543333343 6888999888632 1 22222222
Q ss_pred -hcccCCCEEeccCCcccc-cCccc---ccCCccceeccccccccCC----ccccccCCCCCCcEEeccCCCCC
Q 046470 568 -SSLVSLHHLDLSWTEITG-LPQEL---KALEKLRYLNLEHAYMLSI----IPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 568 -~~L~~L~~L~L~~~~i~~-Lp~~i---~~L~~L~~L~l~~~~~l~~----lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
..+++|++|+|++|.+.. .+..+ ..+++|++|+|+.|.+... ++.+ +..+++|+.|++++|.+.
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 357889999998887764 22222 3578889999988765332 2332 356788888888877543
No 200
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.86 E-value=5.8e-06 Score=76.42 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|+...++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999988875422233457899999999999999999875
No 201
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=2.9e-06 Score=82.15 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=79.0
Q ss_pred CCCCchhhhhhccC-Cccccc----chHHhcCCcccEEEcCCCCCc-----ccChhhhcccCCCEEeccCCcccc-----
Q 046470 521 PTSPRLITLLLIAN-SIDEIT----DGFFQSMSSLRVLSLGSNALS-----KLPSGISSLVSLHHLDLSWTEITG----- 585 (888)
Q Consensus 521 ~~~~~Lr~L~l~~n-~l~~~~----~~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~i~~----- 585 (888)
..++.|++|++++| .+.... ...+...++|++|+|++|.|. .+...+....+|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45667777777777 654321 223556788999999999887 245556677889999999998876
Q ss_pred cCcccccCCccceecc--ccccccCC----ccccccCCCCCCcEEeccCCCCC
Q 046470 586 LPQELKALEKLRYLNL--EHAYMLSI----IPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 586 Lp~~i~~L~~L~~L~l--~~~~~l~~----lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
+...+...++|++|++ ++|.+... +.. .+...++|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 5667788889999999 77765322 222 2556788999999887653
No 202
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.81 E-value=8.5e-05 Score=83.07 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=79.9
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcccccc--CCC-C-EEEEEEecchHHHHHHHcCCC
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ--HHF-D-VVIWAAVSTLQDDIGKRIGFS 231 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~~~l~~~i~~~l~~~ 231 (888)
.++||+.+++.+.+.|.. ....-+.++|++|+|||++|+.++....... ... + ..+.++.+ .. .
T Consensus 181 ~iiGr~~~i~~l~~~l~r--~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------~~---~- 248 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------TK---Y- 248 (468)
T ss_dssp CCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CccCcHHHHHHHHHHHhc--cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------cc---c-
Confidence 589999999999999976 3345568999999999999999998751100 000 1 11222221 00 0
Q ss_pred hhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhh---hhcc-----CCcee
Q 046470 232 ENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDV---CDQM-----DAEKV 303 (888)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v---~~~~-----~~~~~ 303 (888)
.......+...+...-..++.+|++| ...+....+...+. ....++|.+|..... .... ....+
T Consensus 249 ----~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i 320 (468)
T 3pxg_A 249 ----RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPI 320 (468)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEE
T ss_pred ----cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccc
Confidence 00011112222223334567899999 22222222333332 123455655554431 1111 11268
Q ss_pred EcCCCChHHHHHHHHHHhhc
Q 046470 304 EVSCLAHDEAWKLFQKMVER 323 (888)
Q Consensus 304 ~l~~L~~~~a~~Lf~~~~~~ 323 (888)
.+.+.+.++..+++...+..
T Consensus 321 ~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 321 QVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp ECCCCCHHHHHHHHHHTTTT
T ss_pred eeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999977643
No 203
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.79 E-value=0.00024 Score=75.72 Aligned_cols=168 Identities=13% Similarity=0.072 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcccccc-------------------CCCCEEEEEEecchH
Q 046470 161 ELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ-------------------HHFDVVIWAAVSTLQ 221 (888)
Q Consensus 161 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~~~l~ 221 (888)
++..+.+...+..+ .-.+.+.++|+.|+||||+|+.+.+...... .++|. .++...
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~--- 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPE--- 82 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCC---
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEecc---
Confidence 44566666666552 2346799999999999999999988752111 11221 122110
Q ss_pred HHHHHHcCCChhhhcCCCHHHHHHHHHHHh-----ccCcEEEEEccCCCcc--chhhhCCCCCCCCCCcEEEEEecchh-
Q 046470 222 DDIGKRIGFSENWWKKKSPEEKAVDISSIL-----SRKEFVLLLDDIWKPI--NLKDMGVPLQNLNAGSKIVLTTRSVD- 293 (888)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~- 293 (888)
. .......++.. .+.+.+ .+++-++|+|+++... ....+...+.....+..+|++|.+.+
T Consensus 83 ----------~-~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 83 ----------K-GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (334)
T ss_dssp ----------T-TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred ----------c-cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 0 00112233333 233333 3567899999998642 23333333333345667777666542
Q ss_pred hhhccC--CceeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 294 VCDQMD--AEKVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 294 v~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
+..... ...+++.+++.++..+.+.+... .+ ++.+..+++.++|.|..+..+
T Consensus 151 l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 151 LLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred CcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 322222 23889999999999999988751 11 466688999999999766544
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.77 E-value=8.1e-05 Score=90.06 Aligned_cols=178 Identities=14% Similarity=0.181 Sum_probs=91.7
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcccccc--C--CCCEEEEEEecchHHHHHHHcCC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ--H--HFDVVIWAAVSTLQDDIGKRIGF 230 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~--~f~~~~wv~~~~l~~~i~~~l~~ 230 (888)
+.++||+.+++++++.|.. ...+.+.++|++|+||||+|+.+++...... . .-..+++++.+.+... ..
T Consensus 170 d~viGr~~~i~~l~~~l~~--~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g----~~- 242 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG----AK- 242 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC--SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred cccCCcHHHHHHHHHHHhc--CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc----Cc-
Confidence 3579999999999999976 3345578999999999999999998762100 0 1123444544432210 00
Q ss_pred ChhhhcCCCHHHHHHHHHHHh-c-cCcEEEEEccCCCcc-------chhh--hCCCCCCCCCCcEEEEEecchhh-----
Q 046470 231 SENWWKKKSPEEKAVDISSIL-S-RKEFVLLLDDIWKPI-------NLKD--MGVPLQNLNAGSKIVLTTRSVDV----- 294 (888)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~-------~~~~--l~~~l~~~~~gs~iivTtR~~~v----- 294 (888)
+. .........+.+.+ . +++.+|++|++.... .++. +..++.. ..+..+|.||.....
T Consensus 243 ----~~-g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~~~i~~I~at~~~~~~~~~~ 316 (854)
T 1qvr_A 243 ----YR-GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-RGELRLIGATTLDEYREIEK 316 (854)
T ss_dssp --------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-TTCCCEEEEECHHHHHHHTT
T ss_pred ----cc-hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-CCCeEEEEecCchHHhhhcc
Confidence 01 12222233333333 2 368999999997532 0111 1111111 123445555544322
Q ss_pred hhccCCc--eeEcCCCChHHHHHHHHHHhhccc-CCCCCChHHHHHHHHHHhCC
Q 046470 295 CDQMDAE--KVEVSCLAHDEAWKLFQKMVERST-LDSHASIPELAKTLARECGG 345 (888)
Q Consensus 295 ~~~~~~~--~~~l~~L~~~~a~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~g 345 (888)
...+... .+.+.+++.++..+++........ .....-..+....+++.+.|
T Consensus 317 d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 317 DPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp CTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred CHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence 1111111 689999999999999975543110 00001114556666666643
No 205
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.74 E-value=0.00051 Score=75.22 Aligned_cols=105 Identities=14% Similarity=0.211 Sum_probs=77.6
Q ss_pred CCCCC-chhhhhhccCCcccccchHHhcCCcccEEEcCCCC---CcccC-hhhhcccCCCEEeccCCcccccCc-ccccC
Q 046470 520 IPTSP-RLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNA---LSKLP-SGISSLVSLHHLDLSWTEITGLPQ-ELKAL 593 (888)
Q Consensus 520 ~~~~~-~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~---i~~lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~i~~L 593 (888)
|..++ .|+.+.+..+ ++.+....|.+|.+|+.+.++.+. ++.+. ..|..+.+|+.+.+..+ ++.++. .+..+
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 45564 5888887654 788888889999999999998763 66663 45777888888877654 555543 46788
Q ss_pred CccceeccccccccCCccccccCCCCCCcEEeccC
Q 046470 594 EKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLG 628 (888)
Q Consensus 594 ~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 628 (888)
.+|+.+.+..+ ...++...+..+.+|+.+.+..
T Consensus 137 ~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 137 EELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccccce--eeeecccceecccccccccccc
Confidence 89999998754 3566766688889999888764
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.74 E-value=0.00037 Score=74.26 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=94.0
Q ss_pred cccchHHHHHHHHHHhhcC---CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCCh
Q 046470 156 TVVGQELLLYRVWKCITDQ---DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSE 232 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~ 232 (888)
.++|.+..++.+...+... +.....+.++|++|+||||||+.+++.. ...|. ....+ +
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~-~------------ 86 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGP-V------------ 86 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETT-T------------
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEech-H------------
Confidence 4688888777777666431 2344679999999999999999999876 22211 11111 0
Q ss_pred hhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--chhhhCCCCCCC--------C----------CCcEEE-EEecc
Q 046470 233 NWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--NLKDMGVPLQNL--------N----------AGSKIV-LTTRS 291 (888)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~--------~----------~gs~ii-vTtR~ 291 (888)
.....++.. +...+ .++-++++|++.... ..+.+...+... + ....++ .|++.
T Consensus 87 ----~~~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~ 160 (334)
T 1in4_A 87 ----LVKQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS 160 (334)
T ss_dssp ----CCSHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCG
T ss_pred ----hcCHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCc
Confidence 001111111 11122 234577888876431 111111000000 0 011222 34444
Q ss_pred hhhhhccC--Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 292 VDVCDQMD--AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 292 ~~v~~~~~--~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
..+...+. .. ...+++.+.++-.+++.+.+....... -.+.+..|++.++|.|-.+..+
T Consensus 161 ~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~---~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 161 GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI---EDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHTSTTCHHHHHHH
T ss_pred ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHhcCCChHHHHHH
Confidence 33321111 12 578999999999999998875432121 2677899999999999655443
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.73 E-value=0.00039 Score=72.90 Aligned_cols=174 Identities=15% Similarity=0.129 Sum_probs=99.1
Q ss_pred CcccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
.+++|.+..++++.+++... -...+.|.++|++|+|||++|+.+++.. .. ..+.+..+.+...
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISIKGPELLTM 88 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEECHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEEEhHHHHhh
Confidence 35899999888888776421 1345678999999999999999999876 22 2233433344332
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc------------c----hhhhCCCCC--CCCCCcEE
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI------------N----LKDMGVPLQ--NLNAGSKI 285 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~gs~i 285 (888)
. ++. ....+...+.......+.+|++|+++... . ...+...+. ....+..|
T Consensus 89 ~---~g~--------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v 157 (301)
T 3cf0_A 89 W---FGE--------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 157 (301)
T ss_dssp H---HTT--------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE
T ss_pred h---cCc--------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE
Confidence 2 111 11222333333444578999999997420 0 111111111 11234566
Q ss_pred EEEecchhhh-h-cc---CCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCccH
Q 046470 286 VLTTRSVDVC-D-QM---DAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLPLA 349 (888)
Q Consensus 286 ivTtR~~~v~-~-~~---~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 349 (888)
|.||...+.. . .. .-. .+.+...+.++-.+++...+.......... ...+++.+.|.|-+
T Consensus 158 i~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 158 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred EEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 6676654321 1 11 222 788999999998899887765433222222 23555667776643
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.70 E-value=1.6e-05 Score=76.50 Aligned_cols=118 Identities=16% Similarity=0.127 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhhcCC-CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCC
Q 046470 160 QELLLYRVWKCITDQD-KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKK 238 (888)
Q Consensus 160 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~ 238 (888)
.+..++.+.+++.+-. .....+.|+|++|+||||||+.+++.. .....+ .++++++.++...+...+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~~g~-~~~~~~~~~~~~~~~~~~~~~------- 89 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI-YEKKGI-RGYFFDTKDLIFRLKHLMDEG------- 89 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH-HHHSCC-CCCEEEHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH-HHHcCC-eEEEEEHHHHHHHHHHHhcCc-------
Confidence 4455555555554321 234689999999999999999999886 211111 345566666666555443211
Q ss_pred CHHHHHHHHHHHhccCcEEEEEccCCC--ccchh--hhCCCCCC-CCCCcEEEEEecc
Q 046470 239 SPEEKAVDISSILSRKEFVLLLDDIWK--PINLK--DMGVPLQN-LNAGSKIVLTTRS 291 (888)
Q Consensus 239 ~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~iivTtR~ 291 (888)
...... +.+. +.-+|||||++. ...|. .+...+.. ...|..||+||..
T Consensus 90 ~~~~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 90 KDTKFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CCSHHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hHHHHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111222 2222 566899999973 22222 11111111 1246778888874
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.67 E-value=9.1e-05 Score=72.72 Aligned_cols=116 Identities=19% Similarity=0.141 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhcCCC--CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCC
Q 046470 161 ELLLYRVWKCITDQDK--NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKK 238 (888)
Q Consensus 161 ~~~~~~l~~~L~~~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~ 238 (888)
...++.+.+++..... ....+.|+|++|+||||||+.+++.. ......+++++++.+...+...+.. .
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 104 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL---AKRNVSSLIVYVPELFRELKHSLQD-------Q 104 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH---HTTTCCEEEEEHHHHHHHHHHC----------C
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEhHHHHHHHHHHhcc-------c
Confidence 3445556666654322 12688999999999999999999987 2334456778877666666543321 1
Q ss_pred CHHHHHHHHHHHhccCcEEEEEccCCCc--cchhh--hCC-CCCC-CCCCcEEEEEecc
Q 046470 239 SPEEKAVDISSILSRKEFVLLLDDIWKP--INLKD--MGV-PLQN-LNAGSKIVLTTRS 291 (888)
Q Consensus 239 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--l~~-~l~~-~~~gs~iivTtR~ 291 (888)
...... +.+.+. -+|||||++.. ..|.. +.. .+.. ...+.++|+||..
T Consensus 105 ~~~~~~----~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 TMNEKL----DYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp CCHHHH----HHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred hHHHHH----HHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 222222 223322 39999999652 33321 111 1111 1235678888874
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=3.6e-05 Score=78.28 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=50.9
Q ss_pred hhhhhhccCCccccc--chHHhcCCcccEEEcCCCCCcccChhhhccc--CCCEEeccCCcccc-cCc-------ccccC
Q 046470 526 LITLLLIANSIDEIT--DGFFQSMSSLRVLSLGSNALSKLPSGISSLV--SLHHLDLSWTEITG-LPQ-------ELKAL 593 (888)
Q Consensus 526 Lr~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~--~L~~L~L~~~~i~~-Lp~-------~i~~L 593 (888)
|++|+|++|.++.++ +..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.+.. +|. .+..+
T Consensus 172 L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~ 250 (267)
T 3rw6_A 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERF 250 (267)
T ss_dssp CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHC
T ss_pred CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHC
Confidence 344444444433332 23467889999999999988876 3455555 89999999998875 442 36788
Q ss_pred Cccceecc
Q 046470 594 EKLRYLNL 601 (888)
Q Consensus 594 ~~L~~L~l 601 (888)
++|+.||=
T Consensus 251 P~L~~LDg 258 (267)
T 3rw6_A 251 PKLLRLDG 258 (267)
T ss_dssp TTCCEESS
T ss_pred cccCeECC
Confidence 89998883
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.64 E-value=0.00019 Score=80.16 Aligned_cols=176 Identities=14% Similarity=0.127 Sum_probs=99.9
Q ss_pred cccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 156 TVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.++|.+..++++.+++... ....+-|.|+|++|+|||++|+.+++.. .. ..+.++.+.+..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~~l~~-- 276 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGPEIMS-- 276 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHHHHHT--
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEchHhhh--
Confidence 5799999999988877531 2344568999999999999999998875 22 234444433221
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc-------------chhhhCCCCC--CCCCCcEEEEEe
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI-------------NLKDMGVPLQ--NLNAGSKIVLTT 289 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~gs~iivTt 289 (888)
.+ ...........+.....+++.+|+||+++... ....+...+. ....+..||.||
T Consensus 277 --~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 277 --KL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp --SC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred --hh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 11 11111223333444455678899999994210 0111111111 112344555566
Q ss_pred cchh-hh----hccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC-ccHHHH
Q 046470 290 RSVD-VC----DQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL-PLALKT 352 (888)
Q Consensus 290 R~~~-v~----~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~ 352 (888)
.... +- +...-. .+.+...+.++-.+++...+.......... ..++++.+.|. +-.+..
T Consensus 348 n~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAA 413 (489)
T ss_dssp SCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHH
Confidence 5542 21 111222 688999999999999998875433222222 35566666664 433433
No 212
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.62 E-value=6.3e-05 Score=77.49 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=41.4
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecch
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTL 220 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l 220 (888)
..++|.+..+.++.+.+.........|.|+|.+|+|||++|+.+++... ..-...+.++++.+
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEecCCC
Confidence 3578999988888877654222335678999999999999999998762 11123455666644
No 213
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.57 E-value=7.5e-05 Score=78.35 Aligned_cols=67 Identities=10% Similarity=0.191 Sum_probs=45.5
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
+.++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+++...+....| +.++++.+...+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~~~~l 68 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAALNESL 68 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSCCHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCCChHH
Confidence 3579999999998888765323345577999999999999999998652222333 345555443333
No 214
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00054 Score=73.31 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=97.6
Q ss_pred CcccchHHHHHHHHHHhhc-----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITD-----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
.++.|.+..+++|.+.+.- +-...+-|.++|++|.|||.||+++++.. ... .+.|..+++...
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~sk 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELVQK 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGSCS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhhcc
Confidence 3578888888887766531 11334678899999999999999999986 333 244444432210
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc----------c------hhhhCCCCC--CCCCCcEE
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI----------N------LKDMGVPLQ--NLNAGSKI 285 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~------~~~l~~~l~--~~~~gs~i 285 (888)
+.+.+...+...+...-...+.+|++|+++... + +..+...+. ....+..|
T Consensus 222 -----------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~v 290 (405)
T 4b4t_J 222 -----------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKI 290 (405)
T ss_dssp -----------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred -----------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 111122222233333335678999999997421 0 111111111 12234445
Q ss_pred EEEecchhhh----hcc-CCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 286 VLTTRSVDVC----DQM-DAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 286 ivTtR~~~v~----~~~-~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
|.||...+.. .+. .-+ .+.+..-+.++-.++|+.+..........+ ...|++.+.|.-
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 5566553331 112 223 788888888888889987765433222222 456777887753
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.52 E-value=0.00071 Score=80.97 Aligned_cols=153 Identities=16% Similarity=0.244 Sum_probs=89.0
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcccccc---CCCCEEEE-EEecchHHHHHHHcCC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ---HHFDVVIW-AAVSTLQDDIGKRIGF 230 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~w-v~~~~l~~~i~~~l~~ 230 (888)
+.++||+.+++++.+.|.. ....-+.++|.+|+||||+|+.+++...... ...+..++ +..+.+.. +.
T Consensus 186 d~~iGr~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~------~~ 257 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR--RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA------GT 257 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C------CC
T ss_pred CCccCCHHHHHHHHHHHhc--cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc------cc
Confidence 3579999999999999976 3455678999999999999999988751110 01222222 22221110 00
Q ss_pred ChhhhcCCCHHHHHHHHHHHh-ccCcEEEEEccCCCcc----------c-hhhhCCCCCCCCCCcEEEEEecchhhhhc-
Q 046470 231 SENWWKKKSPEEKAVDISSIL-SRKEFVLLLDDIWKPI----------N-LKDMGVPLQNLNAGSKIVLTTRSVDVCDQ- 297 (888)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~-~~~l~~~l~~~~~gs~iivTtR~~~v~~~- 297 (888)
. .....+.....+.+.+ +.++.+|++||++... + ...+...+. ..+..+|.+|...+....
T Consensus 258 ---~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~ 331 (758)
T 1r6b_X 258 ---K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIF 331 (758)
T ss_dssp ---C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCC
T ss_pred ---c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhh
Confidence 0 1122333333343434 3467999999997541 1 122333332 234566666655443211
Q ss_pred -----cCCc--eeEcCCCChHHHHHHHHHHh
Q 046470 298 -----MDAE--KVEVSCLAHDEAWKLFQKMV 321 (888)
Q Consensus 298 -----~~~~--~~~l~~L~~~~a~~Lf~~~~ 321 (888)
+... .+.+...+.++..+++....
T Consensus 332 ~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1111 68899999999999888665
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.50 E-value=0.00033 Score=73.90 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHhhc------------CCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITD------------QDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|++..++.+...+.. .......+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999988877754 01234568899999999999999998876
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.48 E-value=0.00028 Score=84.37 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=82.2
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCC---CEEEEEEecchHHHHHHHcCCC
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHF---DVVIWAAVSTLQDDIGKRIGFS 231 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~l~~~i~~~l~~~ 231 (888)
+.++||+.+++++.+.|.. ....-+.++|++|+|||++|+.+++........+ ++. ++.+.- +..
T Consensus 180 d~iiG~~~~i~~l~~~l~~--~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~---------g~~ 247 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM---------GTK 247 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC--------------
T ss_pred CCccCchHHHHHHHHHHhC--CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc---------ccc
Confidence 3589999999999999976 3445578999999999999999988751111010 111 111110 100
Q ss_pred hhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhh----------hhccCCc
Q 046470 232 ENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDV----------CDQMDAE 301 (888)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v----------~~~~~~~ 301 (888)
+.+.....+...+......++.+|++| ........+...+. ....++|.||..... .+++ .
T Consensus 248 ---~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf--~ 318 (758)
T 3pxi_A 248 ---YRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRF--Q 318 (758)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSE--E
T ss_pred ---ccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhC--c
Confidence 011111122233333444678899999 22222222332332 224556666654431 1111 2
Q ss_pred eeEcCCCChHHHHHHHHHHhhc
Q 046470 302 KVEVSCLAHDEAWKLFQKMVER 323 (888)
Q Consensus 302 ~~~l~~L~~~~a~~Lf~~~~~~ 323 (888)
.+.+...+.++..+++......
T Consensus 319 ~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 319 PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEECCCCCHHHHHHHHHHTTTT
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999976543
No 218
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.001 Score=72.42 Aligned_cols=124 Identities=10% Similarity=0.151 Sum_probs=67.0
Q ss_pred cccccceEEEEecCCCccCC--CCCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccChhhhcccCCCEE
Q 046470 499 EEWEGAKRISLRGNRFDSLS--EIPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPSGISSLVSLHHL 576 (888)
Q Consensus 499 ~~~~~lr~L~l~~n~~~~l~--~~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 576 (888)
....+++.+.+.. .++.++ .|..|.+|+.+.+..+ ++.+....|.++ .|..+.+.. .++.++.......+|+.+
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEE
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccc
Confidence 3445666666643 344443 3667777777777543 667777777776 466655543 345554433333467777
Q ss_pred eccCCcccccCcccccCCccceeccccccccCCccccccCCCCCCcEEeccCC
Q 046470 577 DLSWTEITGLPQELKALEKLRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGC 629 (888)
Q Consensus 577 ~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 629 (888)
.+..+ ++.+....-.-.+|....+..+ +..+....+..+.+|+...+...
T Consensus 119 ~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp ECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred cCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 77653 3333222212224555544433 23444444666777777766543
No 219
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.48 E-value=8.1e-05 Score=76.82 Aligned_cols=152 Identities=15% Similarity=0.124 Sum_probs=80.1
Q ss_pred CcccchHHHHHHHHHHhhc----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCITD----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
..++|.+..++.+.+.+.. .....+-+.++|++|+|||++|+.+++.. ...|- .+..+.+....
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~~~~ 84 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFIEMF 84 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTTTSC
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHHHhh
Confidence 4578988777666665431 01122347799999999999999999876 22221 11222211100
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc-----------------chhhhCCCCCC---CCCCcE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI-----------------NLKDMGVPLQN---LNAGSK 284 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~---~~~gs~ 284 (888)
.+. ....... .+......++.+|++||++... .+..+...+.. ......
T Consensus 85 ---~~~-----~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 153 (268)
T 2r62_A 85 ---VGL-----GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVI 153 (268)
T ss_dssp ---SSS-----CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCE
T ss_pred ---cch-----HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEE
Confidence 000 0111111 1222223467899999996421 12223222221 112245
Q ss_pred EEEEecchhh-----hhccCCc-eeEcCCCChHHHHHHHHHHhhc
Q 046470 285 IVLTTRSVDV-----CDQMDAE-KVEVSCLAHDEAWKLFQKMVER 323 (888)
Q Consensus 285 iivTtR~~~v-----~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~ 323 (888)
||.||..... .+..... .+.+...+.++-.+++...+..
T Consensus 154 vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 154 VLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp EEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred EEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 6666665432 1111122 6788888889888888877643
No 220
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.46 E-value=0.00061 Score=75.98 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=36.3
Q ss_pred CcccchHHHHHHHHHHh---hcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCI---TDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|.+..++.+..++ .......+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899998877655443 3322234578899999999999999999876
No 221
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.43 E-value=3.2e-05 Score=71.14 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=34.3
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 47899988888888775421223447799999999999999998765
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.37 E-value=0.00054 Score=72.28 Aligned_cols=48 Identities=29% Similarity=0.393 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHhhcC-------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 35789999988888877642 1123589999999999999999999876
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.32 E-value=0.0011 Score=73.44 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=95.5
Q ss_pred CcccchHHHHHHHHHHhh---cC-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCIT---DQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.+++|.+..++++.+.+. .. ..-.+-|.++|++|+|||+||+.+++.. ...| +.++.+++....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~~ 89 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVELF 89 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTCC
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHHH
Confidence 458999887766665542 21 0123458899999999999999999875 2222 344444332110
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc----------------chhhhCCCCC--CCCCCcEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI----------------NLKDMGVPLQ--NLNAGSKIV 286 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~gs~ii 286 (888)
...........+.......+.+|+||+++... .+..+...+. ....+..||
T Consensus 90 -----------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVI 158 (476)
T 2ce7_A 90 -----------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVM 158 (476)
T ss_dssp -----------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEE
T ss_pred -----------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEE
Confidence 01111223333444455678999999996421 1111211111 112345566
Q ss_pred EEecchhhhh--cc---CCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 287 LTTRSVDVCD--QM---DAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 287 vTtR~~~v~~--~~---~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
.||...+... .. .-. .+.+...+.++-.+++...+.......... ...|++.+.|..
T Consensus 159 aaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 159 AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 6776654321 11 122 678888888887888877665432221111 345777888876
No 224
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0013 Score=71.69 Aligned_cols=172 Identities=16% Similarity=0.196 Sum_probs=96.9
Q ss_pred CcccchHHHHHHHHHHhhc-----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITD-----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
.++.|.+..+++|.+.+.- +-...+-|.++|++|.|||++|+++++.. ... .+.+..+.+...
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~sk 254 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVDK 254 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCCS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhccc
Confidence 3578888888877766531 11345778999999999999999999987 222 234444432210
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc----------c------hhhhCCCCC--CCCCCcEE
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI----------N------LKDMGVPLQ--NLNAGSKI 285 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~------~~~l~~~l~--~~~~gs~i 285 (888)
+...+...+...+...-...+.+|++|+++... + +..+...+. ....+..|
T Consensus 255 -----------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv 323 (437)
T 4b4t_L 255 -----------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI 323 (437)
T ss_dssp -----------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE
T ss_pred -----------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEE
Confidence 111122222222333335678999999997421 0 111111111 22334566
Q ss_pred EEEecchhhhh----ccC-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 286 VLTTRSVDVCD----QMD-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 286 ivTtR~~~v~~----~~~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
|.||-..+... +.| -+ .+.+..-+.++-.++|+.+..........+ ...|++.+.|.-
T Consensus 324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred EEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 66776544321 112 23 677887788888888887765433222222 356677777743
No 225
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.31 E-value=0.0028 Score=64.67 Aligned_cols=176 Identities=17% Similarity=0.138 Sum_probs=92.0
Q ss_pred CcccchHHHHHHHHHHh---hcC-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCI---TDQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.+++|.+..++++.+.+ ... ....+-+.|+|++|+||||+|+.+++.. ...| +.+..+++...
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~~- 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVEM- 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTTS-
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHHH-
Confidence 46899988777665543 221 0123458899999999999999999875 2222 33433332210
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc----------------chhhhCCCCC--CCCCCcEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI----------------NLKDMGVPLQ--NLNAGSKIV 286 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~gs~ii 286 (888)
+.......+...+.......+.++++|+++... ....+...+. ....+..||
T Consensus 85 ----------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI 154 (257)
T 1lv7_A 85 ----------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 154 (257)
T ss_dssp ----------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEE
T ss_pred ----------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEE
Confidence 011222333333444444567899999984310 0011110010 112344566
Q ss_pred EEecchh-hhhc-c---CCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCC-CccHHH
Q 046470 287 LTTRSVD-VCDQ-M---DAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGG-LPLALK 351 (888)
Q Consensus 287 vTtR~~~-v~~~-~---~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~ 351 (888)
.||...+ +... . .-. .+.+...+.++-.+++............. ....+++.+.| .+--+.
T Consensus 155 ~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~----~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI----DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCCHHHHH
T ss_pred EeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc----cHHHHHHHcCCCCHHHHH
Confidence 6666543 2111 1 112 67777888888888887765432211111 13445666666 554443
No 226
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0036 Score=67.85 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=96.5
Q ss_pred cccchHHHHHHHHHHhhc-----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 156 TVVGQELLLYRVWKCITD-----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
++.|.+..+++|.+.+.- +-...+-|.++|++|.|||.||+++++.. ... .+.+..+.+...
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~sk- 282 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQK- 282 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCCC-
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhcc-
Confidence 578988888888766421 11346778899999999999999999986 222 344444432210
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--------c--------hhhhCCCCC--CCCCCcEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--------N--------LKDMGVPLQ--NLNAGSKIV 286 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~gs~ii 286 (888)
+.+.+...+...+...-...+.+|++|+++... . ...+...+. ....+..||
T Consensus 283 ----------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 283 ----------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp ----------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred ----------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 011122222333333345678999999997421 0 011111111 112233445
Q ss_pred EEecchhhh----hccC-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 287 LTTRSVDVC----DQMD-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 287 vTtR~~~v~----~~~~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
.||-..+.. .+.| -+ .+.+..-+.++-.++|+.++.........+ ...|++.|.|.-
T Consensus 353 aATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp EECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred eCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 566543321 1122 23 778888888888889987765433222222 356777887753
No 227
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0026 Score=69.12 Aligned_cols=171 Identities=17% Similarity=0.174 Sum_probs=95.7
Q ss_pred CcccchHHHHHHHHHHhhc-----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITD-----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
.++.|.+..+++|.+.+.- +-...+-|.++|++|.|||.+|+++++.. ... .+.++.+.+...
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~~ 254 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQM 254 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCSS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhhc
Confidence 3578999988888776431 11345778999999999999999999986 222 344444432210
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCc-------c-----c----hhhhCCCCC--CCCCCcEE
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKP-------I-----N----LKDMGVPLQ--NLNAGSKI 285 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~-----~----~~~l~~~l~--~~~~gs~i 285 (888)
+.+.+...+...+...-...+.+|++|+++.. . . ...+...+. ....+..|
T Consensus 255 -----------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViV 323 (434)
T 4b4t_M 255 -----------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKV 323 (434)
T ss_dssp -----------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEE
T ss_pred -----------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEE
Confidence 01111222222222333467899999998631 0 0 111111111 11234455
Q ss_pred EEEecchhhhh----ccC-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC
Q 046470 286 VLTTRSVDVCD----QMD-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL 346 (888)
Q Consensus 286 ivTtR~~~v~~----~~~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 346 (888)
|.||...+... +.| -+ .+.+..-+.++-.++|+.+..........+ ...|++.+.|.
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 55666544321 111 22 678888888888888887765433222222 45677777774
No 228
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.0012 Score=68.84 Aligned_cols=143 Identities=13% Similarity=0.035 Sum_probs=83.8
Q ss_pred chHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccc-cCCCCEEEEEEecchHHHHHHHcCCChhhhcC
Q 046470 159 GQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHE-QHHFDVVIWAAVSTLQDDIGKRIGFSENWWKK 237 (888)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~ 237 (888)
|.++.++.+...+.. ++.+.+.++|+.|+||||+|+.+.+....- ..+.+. .++..+. ..
T Consensus 1 g~~~~~~~L~~~i~~--~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~----------------~~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEK--SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEG----------------EN 61 (305)
T ss_dssp ---CHHHHHHHHHHT--CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSS----------------SC
T ss_pred ChHHHHHHHHHHHHC--CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCc----------------CC
Confidence 345566677777766 337899999999999999999998752001 123443 3332210 01
Q ss_pred CCHHHHHHHHHHHh-----ccCcEEEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecch-hhhhccCCceeEcCCCC
Q 046470 238 KSPEEKAVDISSIL-----SRKEFVLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSV-DVCDQMDAEKVEVSCLA 309 (888)
Q Consensus 238 ~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~l~~L~ 309 (888)
...++... +.+.. .+++-++|+|+++.. .....+...+......+.+|++|.+. .+........+++.+++
T Consensus 62 ~~id~ir~-li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~ 140 (305)
T 2gno_A 62 IGIDDIRT-IKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNV 140 (305)
T ss_dssp BCHHHHHH-HHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred CCHHHHHH-HHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCC
Confidence 22233322 22222 245679999999864 23444443343344567777766543 23211111188999999
Q ss_pred hHHHHHHHHHHh
Q 046470 310 HDEAWKLFQKMV 321 (888)
Q Consensus 310 ~~~a~~Lf~~~~ 321 (888)
.++..+.+.+..
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 229
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0069 Score=65.04 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=93.9
Q ss_pred cccchHHHHHHHHHHhhc-----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 156 TVVGQELLLYRVWKCITD-----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.+|+++++.. ... .+.++.+++...
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l~sk- 255 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSELIQK- 255 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGGCCS-
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHhhhc-
Confidence 567888888877766531 11345779999999999999999999987 222 233444432210
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc----------c------hhhhCCCCC--CCCCCcEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI----------N------LKDMGVPLQ--NLNAGSKIV 286 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~------~~~l~~~l~--~~~~gs~ii 286 (888)
+...+...+...+...-+..+.+|++|+++... + +..+...+. ....+..||
T Consensus 256 ----------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVI 325 (437)
T 4b4t_I 256 ----------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVI 325 (437)
T ss_dssp ----------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEE
T ss_pred ----------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 011112222222233334678999999997420 0 111111111 122344455
Q ss_pred EEecchhhhh--cc--C-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC
Q 046470 287 LTTRSVDVCD--QM--D-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL 346 (888)
Q Consensus 287 vTtR~~~v~~--~~--~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 346 (888)
.||-..+... .. | -+ .+.+..-+.++-.++|..+..........+ ...|++.+.|.
T Consensus 326 aATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 326 MATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp EEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred EeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 5665544321 11 1 12 677777788888888887765433222222 35666777764
No 230
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0039 Score=67.69 Aligned_cols=171 Identities=16% Similarity=0.216 Sum_probs=91.7
Q ss_pred CcccchHHHHHHHHHHhhc-----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITD-----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
.++.|.+..+++|.+.+.- +-...+-|.++|++|+|||++|+++++.. ..+ .+.+..+++...
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~~ 245 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVHK 245 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCCS
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhcc
Confidence 3578999888888776631 12345678999999999999999999986 222 234444432210
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCc----------cc------hhhhCCCCC--CCCCCcEE
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKP----------IN------LKDMGVPLQ--NLNAGSKI 285 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~------~~~l~~~l~--~~~~gs~i 285 (888)
+.+.+...+...+...-...+.+|++|+++.. .+ +..+...+. ....+..|
T Consensus 246 -----------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~v 314 (428)
T 4b4t_K 246 -----------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKV 314 (428)
T ss_dssp -----------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEE
T ss_pred -----------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 11112222333333334567899999999631 00 111111111 12234455
Q ss_pred EEEecchhh---h-hccC-Cc-eeEcCCCChHHH-HHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC
Q 046470 286 VLTTRSVDV---C-DQMD-AE-KVEVSCLAHDEA-WKLFQKMVERSTLDSHASIPELAKTLARECGGL 346 (888)
Q Consensus 286 ivTtR~~~v---~-~~~~-~~-~~~l~~L~~~~a-~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 346 (888)
|.||...+. | .+.| -+ .+.+..++..++ ..+|.............+ ...|++.+.|.
T Consensus 315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 667665332 1 1122 22 667766755544 456655554332222222 45667777774
No 231
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.14 E-value=0.00019 Score=66.23 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-..++|+|+.|+|||||++.+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999976
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.12 E-value=0.00036 Score=83.40 Aligned_cols=147 Identities=19% Similarity=0.226 Sum_probs=82.2
Q ss_pred CcccchHHHHHHHHHHhhcC-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKR 227 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~ 227 (888)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++.. ...-...+.++++.+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l---~~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI---FGDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH---HSCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh---cCCCcceEEEechhccccc---
Confidence 45899999998888887642 1123379999999999999999999876 2222334555555221100
Q ss_pred cCCChhhhcCCCHHHHHHHHHHHhc-cCcEEEEEccCCCcc--chhhhCCC-----CCC------CCCCcEEEEEecc--
Q 046470 228 IGFSENWWKKKSPEEKAVDISSILS-RKEFVLLLDDIWKPI--NLKDMGVP-----LQN------LNAGSKIVLTTRS-- 291 (888)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--~~~~l~~~-----l~~------~~~gs~iivTtR~-- 291 (888)
...... +.+.++ ...-+|+||++.... ....+... +.+ .....+||+||..
T Consensus 565 ---------~~~~~~----l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 565 ---------STSGGQ----LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp ---------CCC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred ---------ccccch----hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 000111 112222 234589999997542 12222111 111 1235678888872
Q ss_pred ---------------hhhhhccCCceeEcCCCChHHHHHHHHHHh
Q 046470 292 ---------------VDVCDQMDAEKVEVSCLAHDEAWKLFQKMV 321 (888)
Q Consensus 292 ---------------~~v~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 321 (888)
.++..+++ ..+.+.+++.++-..++...+
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~Rl~-~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFINRID-EIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHTTSS-EEEECC--CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhCCHHHHhhCC-eEEecCCCCHHHHHHHHHHHH
Confidence 11222332 277888999888888776654
No 233
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.96 E-value=0.0056 Score=66.45 Aligned_cols=101 Identities=10% Similarity=0.110 Sum_probs=64.4
Q ss_pred CCCCCchhhhhhccCCcccccchHHhcCCcccEEEcCCCCCcccCh-hhhcccCCCEEeccCCcccccCcccccCCccce
Q 046470 520 IPTSPRLITLLLIANSIDEITDGFFQSMSSLRVLSLGSNALSKLPS-GISSLVSLHHLDLSWTEITGLPQELKALEKLRY 598 (888)
Q Consensus 520 ~~~~~~Lr~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~ 598 (888)
+....+|+.+.+.. .++.++...|.+|.+|+.++|..+ ++.++. .+.++ +|+.+.+.. .++.++...-...+|+.
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSE
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCccc
Confidence 34456677777754 488888888999999999999754 666643 45555 677777654 35565544333347888
Q ss_pred eccccccccCCccccccCCCCCCcEEecc
Q 046470 599 LNLEHAYMLSIIPHQLISGFSKLEVLRLL 627 (888)
Q Consensus 599 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 627 (888)
+.+..+ +..+....+.++ +|..+.+.
T Consensus 118 i~lp~~--~~~i~~~~F~~~-~l~~~~~~ 143 (379)
T 4h09_A 118 FEFPGA--TTEIGNYIFYNS-SVKRIVIP 143 (379)
T ss_dssp EECCTT--CCEECTTTTTTC-CCCEEEEC
T ss_pred ccCCCc--cccccccccccc-eeeeeecc
Confidence 888765 244444434443 45555443
No 234
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.87 E-value=0.0058 Score=63.48 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999886
No 235
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.73 E-value=0.01 Score=61.18 Aligned_cols=172 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred CcccchHHHHHHHHHHhh---cC------C-CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCIT---DQ------D-KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~------~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
..++|.+..++++.+... .. + .-.+-+.|+|++|+||||||+.++... . ...+.+...++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~---~~~i~~~~~~~~~-- 111 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGSDFVE-- 111 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHHHHHH--
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---C---CCEEEecHHHHHH--
Confidence 467898876666554432 10 0 111238999999999999999999876 2 1233443332211
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCc------------cc----hhhhCCCCCCCCC--CcEEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKP------------IN----LKDMGVPLQNLNA--GSKIV 286 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~----~~~l~~~l~~~~~--gs~ii 286 (888)
.. . ......+...++..-...+.++|+||++.. .. ...+...+..+.. ...++
T Consensus 112 --~~-~------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~ 182 (278)
T 1iy2_A 112 --MF-V------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 182 (278)
T ss_dssp --ST-T------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEE
T ss_pred --HH-h------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 00 0 000111111222222345689999999521 00 1111111211112 22334
Q ss_pred EEecchhhh-----hccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 287 LTTRSVDVC-----DQMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 287 vTtR~~~v~-----~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
.||...++. +...-. .+.+...+.++-.+++...+......... ....+++.+.|..
T Consensus 183 a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~----~~~~la~~~~G~~ 245 (278)
T 1iy2_A 183 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFV 245 (278)
T ss_dssp EEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred EecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc----CHHHHHHHcCCCC
Confidence 456554432 111223 67888888888888887665332211111 1334666666644
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.70 E-value=0.0028 Score=74.37 Aligned_cols=171 Identities=13% Similarity=0.150 Sum_probs=95.4
Q ss_pred cccchHHHHHHHHHHhh----cC-------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 156 TVVGQELLLYRVWKCIT----DQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~----~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
++.|.+..+++|.+.+. .. -...+-|.++|++|+|||+||+++++.. ..+ .+.|+.+++..
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~l~s-- 276 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPEIMS-- 276 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHHHHS--
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHHhhc--
Confidence 46787777766666542 21 1245679999999999999999999876 222 34454443221
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--------c-----hhhhCCCCCC--CCCCcEEEEEe
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--------N-----LKDMGVPLQN--LNAGSKIVLTT 289 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l~~--~~~gs~iivTt 289 (888)
. +...+...+...+....+..+.+|++|+++... + ...+...+.. ...+..||.||
T Consensus 277 --k-------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 277 --K-------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp --S-------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred --c-------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 0 011222333344444456778999999997421 0 1111111111 11233344455
Q ss_pred cchh-hhh---ccC-Cc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 290 RSVD-VCD---QMD-AE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 290 R~~~-v~~---~~~-~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
...+ +-. +.+ -. .+++..-+.++-.++|...........+.+ ...|++++.|.-
T Consensus 348 N~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp SSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred CChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 5433 211 111 22 678888888888888887765433222222 456778888764
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.69 E-value=0.011 Score=59.89 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=83.7
Q ss_pred CcccchHHHHHHHHHHhh---cC------C-CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCIT---DQ------D-KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~------~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.+++|.+..+.++.+... .. + .-.+-+.|+|++|+||||||+.++... .. ..+.+...++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~---~~i~~~~~~~~~-- 87 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE-- 87 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHHHHHH--
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---CEEEeeHHHHHH--
Confidence 457888766555544332 10 0 111238999999999999999999876 21 223333322211
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHh-ccCcEEEEEccCCCcc------------c----hhhhCCCCCCCCC--CcEE
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSIL-SRKEFVLLLDDIWKPI------------N----LKDMGVPLQNLNA--GSKI 285 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~~~--gs~i 285 (888)
.. . .........+.+.. ...+.++++||++... . ...+...+..+.. ..-+
T Consensus 88 --~~-~-------~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~ 157 (254)
T 1ixz_A 88 --MF-V-------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 157 (254)
T ss_dssp --SC-T-------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEE
T ss_pred --HH-h-------hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 10 0 00111112222222 2456899999995210 0 1111111111111 2234
Q ss_pred EEEecchhhhh-----ccCCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCC
Q 046470 286 VLTTRSVDVCD-----QMDAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGL 346 (888)
Q Consensus 286 ivTtR~~~v~~-----~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 346 (888)
+.||...++.. ...-. .+.+...+.++-.+++...+.......... ...+++.+.|.
T Consensus 158 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~ 220 (254)
T 1ixz_A 158 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGF 220 (254)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTC
T ss_pred EEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCC
Confidence 44666554421 11223 678888888888888876653222111111 33466666664
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.67 E-value=0.0023 Score=66.95 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhhcCCC-CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHH
Q 046470 160 QELLLYRVWKCITDQDK-NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKR 227 (888)
Q Consensus 160 r~~~~~~l~~~L~~~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~ 227 (888)
+...++.+.+++..... ....+.++|++|+|||+||+++++.. .. .....++++.++++...+...
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~-~~-~~g~~v~~~~~~~l~~~l~~~ 199 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL-SE-KKGVSTTLLHFPSFAIDVKNA 199 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH-HH-HSCCCEEEEEHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH-HH-hcCCcEEEEEHHHHHHHHHHH
Confidence 44455556666654222 24678899999999999999999987 20 222345677777666655443
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.57 E-value=0.0052 Score=73.31 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=84.2
Q ss_pred cccchHHHHHHHHHHhhc-----------CCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 156 TVVGQELLLYRVWKCITD-----------QDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.++|.+..++++.+++.. .-.....|.|+|++|+||||||+.++... ...| +.+..+++..
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~l~~-- 276 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPEIMS-- 276 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHHHSS--
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchHhhh--
Confidence 578988888888777642 11234579999999999999999998875 2222 3343322210
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCCcc--------c-----hhhhCCCCCC--CCCCcEEEEEe
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWKPI--------N-----LKDMGVPLQN--LNAGSKIVLTT 289 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l~~--~~~gs~iivTt 289 (888)
.. .......+...+.......+.++++|++.... + ...+...+.. ...+..+|.||
T Consensus 277 -----~~----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~at 347 (806)
T 1ypw_A 277 -----KL----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp -----SS----TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEEC
T ss_pred -----hh----hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEeccc
Confidence 00 11111223333444445678899999995321 0 0111111100 11234455555
Q ss_pred cchh-hhhcc----CCc-eeEcCCCChHHHHHHHHHHhhcc
Q 046470 290 RSVD-VCDQM----DAE-KVEVSCLAHDEAWKLFQKMVERS 324 (888)
Q Consensus 290 R~~~-v~~~~----~~~-~~~l~~L~~~~a~~Lf~~~~~~~ 324 (888)
...+ +-... .-. .+.+...+.++-.+++...+...
T Consensus 348 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp SCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred CCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 5432 21111 112 56788888999999988776543
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.53 E-value=0.0073 Score=68.62 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHHhhc----CCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCITD----QDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|.+...+.+.+.+.- .......+.++|++|+||||+|+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 468888777776554431 12245689999999999999999998876
No 241
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.53 E-value=0.0097 Score=66.21 Aligned_cols=168 Identities=16% Similarity=0.179 Sum_probs=89.4
Q ss_pred CcccchHHHHHHHHHHh---hcCC-------CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH
Q 046470 155 HTVVGQELLLYRVWKCI---TDQD-------KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI 224 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i 224 (888)
.+++|.+..+.++.+.. .... .-.+-+.|+|++|+||||||+.++... .. ..+.++.+++..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH--
Confidence 46899888766665543 2210 112348999999999999999999876 22 234444443211
Q ss_pred HHHcCCChhhhcCCCHHHHHHHHHHHhcc----CcEEEEEccCCCcc------------c----hhhhCCCCCCC--CCC
Q 046470 225 GKRIGFSENWWKKKSPEEKAVDISSILSR----KEFVLLLDDIWKPI------------N----LKDMGVPLQNL--NAG 282 (888)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----k~~LlVlDdv~~~~------------~----~~~l~~~l~~~--~~g 282 (888)
.........+...++. .+.++++|+++... . +..+...+..+ ..+
T Consensus 103 -------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~ 169 (499)
T 2dhr_A 103 -------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 169 (499)
T ss_dssp -------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCC
T ss_pred -------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCcc
Confidence 0111122334444432 35799999996321 0 11121112111 223
Q ss_pred cEEEEEecchhhhh--cc---CCc-eeEcCCCChHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCCc
Q 046470 283 SKIVLTTRSVDVCD--QM---DAE-KVEVSCLAHDEAWKLFQKMVERSTLDSHASIPELAKTLARECGGLP 347 (888)
Q Consensus 283 s~iivTtR~~~v~~--~~---~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 347 (888)
..|+.||...++.. .. .-. .+.+...+.++-.+++..++........ .....|++.+.|..
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d----v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED----VDLALLAKRTPGFV 236 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS----STTHHHHTTSCSCC
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH----HHHHHHHHhcCCCC
Confidence 44555666655422 11 122 6788888888888888766533221111 11345666666654
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.45 E-value=0.032 Score=57.16 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=79.2
Q ss_pred CcccchHHHHHHHHHHhhc----C------C-CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITD----Q------D-KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~------~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
.++.|.++.++++.+.+.. . + .-.+-+.++|++|+||||||+.++... . . ..+.+..+++...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhh
Confidence 3578888888777665421 0 0 111239999999999999999998875 1 1 2445544322110
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHH-hccCcEEEEEccCCCccc---------h----hhhCCCCCCC--CCCcEEEE
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSI-LSRKEFVLLLDDIWKPIN---------L----KDMGVPLQNL--NAGSKIVL 287 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~---------~----~~l~~~l~~~--~~gs~iiv 287 (888)
. .. .....+..+.+. -...+.++++|+++.... . ..+...+..+ ....-++.
T Consensus 84 -------~----~~-~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia 151 (274)
T 2x8a_A 84 -------Y----VG-ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMA 151 (274)
T ss_dssp -------T----TH-HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEE
T ss_pred -------h----hh-HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEe
Confidence 0 00 001112222222 234678999999974210 0 0010011111 12333455
Q ss_pred Eecchhhhh----cc-CCc-eeEcCCCChHHHHHHHHHHhh
Q 046470 288 TTRSVDVCD----QM-DAE-KVEVSCLAHDEAWKLFQKMVE 322 (888)
Q Consensus 288 TtR~~~v~~----~~-~~~-~~~l~~L~~~~a~~Lf~~~~~ 322 (888)
+|...++.. +. .-+ .+.+...+.++-.++|+....
T Consensus 152 ~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred ecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 666655421 11 223 678888888888888887663
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.25 E-value=0.0062 Score=72.74 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHhhcC-------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999988888777531 1223579999999999999999998876
No 244
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.19 E-value=0.0032 Score=64.98 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=46.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEe--cchHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAV--STLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKE 255 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~ 255 (888)
-+++.|+|++|+||||||.++.... .. .+.|+++ .+. +.. ...+.++....+.+.+...+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~-------v~~-----~~~~le~~l~~i~~~l~~~~ 184 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEP-------LSG-----YNTDFNVFVDDIARAMLQHR 184 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCS-------STT-----CBCCHHHHHHHHHHHHHHCS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhh-------hhh-----hhcCHHHHHHHHHHHHhhCC
Confidence 3577899999999999999998752 11 2345555 211 110 11455667777777777767
Q ss_pred EEEEEccCCC
Q 046470 256 FVLLLDDIWK 265 (888)
Q Consensus 256 ~LlVlDdv~~ 265 (888)
+||+|++..
T Consensus 185 -LLVIDsI~a 193 (331)
T 2vhj_A 185 -VIVIDSLKN 193 (331)
T ss_dssp -EEEEECCTT
T ss_pred -EEEEecccc
Confidence 999999864
No 245
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.12 E-value=0.0067 Score=60.60 Aligned_cols=112 Identities=18% Similarity=0.132 Sum_probs=59.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHH---HHHcCCChhhh-------------------
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDI---GKRIGFSENWW------------------- 235 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i---~~~l~~~~~~~------------------- 235 (888)
-.+++|+|++|+|||||++.+...... .-..++|+........+ ...++......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQW 99 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCcee
Confidence 368999999999999999999866521 12346677665222221 22333221100
Q ss_pred --cCCCHHHHHHHHHHHhc-cCcE--EEEEccCCCc-----cchhhhCCCCCC--CCCCcEEEEEecch
Q 046470 236 --KKKSPEEKAVDISSILS-RKEF--VLLLDDIWKP-----INLKDMGVPLQN--LNAGSKIVLTTRSV 292 (888)
Q Consensus 236 --~~~~~~~~~~~l~~~l~-~k~~--LlVlDdv~~~-----~~~~~l~~~l~~--~~~gs~iivTtR~~ 292 (888)
...+..++...+...+. .+.- +||+|..... .....+...+.. ...|..||++|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 100 SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11245555555555543 2444 9999998632 111222111111 12466788887764
No 246
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.05 E-value=0.013 Score=61.94 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhh---hcCCCHHHHHHHHHHHhc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENW---WKKKSPEEKAVDISSILS 252 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l~ 252 (888)
.-.++.|.|++|+||||||..+..... ..-..++|++.. ......+++++...+. ....+.++....+...++
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 447999999999999999999988762 122356788776 2223366667654322 123456666666665554
Q ss_pred -cCcEEEEEccCCCc
Q 046470 253 -RKEFVLLLDDIWKP 266 (888)
Q Consensus 253 -~k~~LlVlDdv~~~ 266 (888)
.+.-++|+|.+...
T Consensus 137 ~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 137 SGVVDLIVVDSVAAL 151 (356)
T ss_dssp TSCCSEEEEECTTTC
T ss_pred hcCCCeEEehHhhhh
Confidence 45668999998543
No 247
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.00 E-value=0.0088 Score=56.98 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=58.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-----chHHHHHHHcCCCh----hhh--cCCC-------
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-----TLQDDIGKRIGFSE----NWW--KKKS------- 239 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-----~l~~~i~~~l~~~~----~~~--~~~~------- 239 (888)
...|-|++..|.||||.|-...-+.. ...+ .+..+..- .--..+++.++..- ..+ ...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--GHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--HTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 45677777777999999999887761 2223 33344222 11223444442100 001 0101
Q ss_pred HHHHHHHHHHHhccCcE-EEEEccCCC-----ccchhhhCCCCCCCCCCcEEEEEecch
Q 046470 240 PEEKAVDISSILSRKEF-VLLLDDIWK-----PINLKDMGVPLQNLNAGSKIVLTTRSV 292 (888)
Q Consensus 240 ~~~~~~~l~~~l~~k~~-LlVlDdv~~-----~~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (888)
........++.+.+.+| |||||++-. ..+.+++...+.....+..||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 11222334455554444 999999843 223333333333344567899999984
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.97 E-value=0.012 Score=55.77 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 046470 179 GIIGLYGIGGVGKTTLLTQV 198 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v 198 (888)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 249
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.91 E-value=0.024 Score=58.12 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhhh---cCCCHHHH-HHHHHHH--h
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENWW---KKKSPEEK-AVDISSI--L 251 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~~~--l 251 (888)
.++-|.|++|+||||||..+..... ....-..++||+.. .+....+++++...+.. ...+.++. ...+... +
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i 107 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI 107 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence 3789999999999999999887762 11123578899887 33344578888764321 23455555 3333222 2
Q ss_pred -ccCcEEEEEccCCCc
Q 046470 252 -SRKEFVLLLDDIWKP 266 (888)
Q Consensus 252 -~~k~~LlVlDdv~~~ 266 (888)
.++.-++|+|-+...
T Consensus 108 ~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNL 123 (333)
T ss_dssp CTTCCEEEEEECSTTC
T ss_pred hccCceEEEEeccccc
Confidence 456789999998654
No 250
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.89 E-value=0.0088 Score=72.21 Aligned_cols=47 Identities=30% Similarity=0.397 Sum_probs=37.7
Q ss_pred cccchHHHHHHHHHHhhcC-------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCITDQ-------DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|.+..++.+...+... +.....+.|+|+.|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999888888777531 1223589999999999999999998876
No 251
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.82 E-value=0.053 Score=57.70 Aligned_cols=156 Identities=12% Similarity=-0.023 Sum_probs=97.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCChhhhcCCCHHHHHHHHHH-HhccC
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSENWWKKKSPEEKAVDISS-ILSRK 254 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k 254 (888)
.-.++..++|..|.||++.+..+.+.. . ...|+....+.+. ...+..++...+.. -+-++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~plf~~ 76 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVA-A-AQGFEEHHTFSID-----------------PNTDWNAIFSLCQAMSLFAS 76 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHH-H-HHTCCEEEEEECC-----------------TTCCHHHHHHHHHHHHHCCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHH-H-hCCCCeeEEEEec-----------------CCCCHHHHHHHhcCcCCccC
Confidence 456799999999999999999998865 1 1234322111111 12344555544432 23466
Q ss_pred cEEEEEccCCC-c--cchhhhCCCCCCCCCCcEEEEEecc-------hhhhhccCC--ceeEcCCCChHHHHHHHHHHhh
Q 046470 255 EFVLLLDDIWK-P--INLKDMGVPLQNLNAGSKIVLTTRS-------VDVCDQMDA--EKVEVSCLAHDEAWKLFQKMVE 322 (888)
Q Consensus 255 ~~LlVlDdv~~-~--~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~~~--~~~~l~~L~~~~a~~Lf~~~~~ 322 (888)
+-++|+|+++. . ..++.+...+.....++.+|++|.. ..+...... ..++..+++.++....+.+.+.
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHH
Confidence 78889999865 2 3445454444433457777766543 233333322 3889999999999988888775
Q ss_pred cccCCCCCChHHHHHHHHHHhCCCccHHHHH
Q 046470 323 RSTLDSHASIPELAKTLARECGGLPLALKTV 353 (888)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 353 (888)
......+ ++.+..+++.++|.+.++...
T Consensus 157 ~~g~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 157 QLNLELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HTTCEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred HcCCCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 4332222 577888999999988776553
No 252
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.78 E-value=0.019 Score=61.02 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhhh---cCCCHHHHHHHHHHHhc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENWW---KKKSPEEKAVDISSILS 252 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~l~ 252 (888)
.-.++.|.|.+|+||||||..+..... ..-..++|++.. ..-...+..++...+.+ ...+.++....+....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999887762 122367888886 22223355666543211 22344555555544443
Q ss_pred -cCcEEEEEccCCC
Q 046470 253 -RKEFVLLLDDIWK 265 (888)
Q Consensus 253 -~k~~LlVlDdv~~ 265 (888)
.+.-+||+|.+..
T Consensus 139 ~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 139 SGAVDVIVVDSVAA 152 (356)
T ss_dssp HTCCSEEEEECGGG
T ss_pred ccCCCEEEEcCHHH
Confidence 4456999998753
No 253
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.73 E-value=0.0049 Score=60.68 Aligned_cols=110 Identities=17% Similarity=-0.023 Sum_probs=61.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec---chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS---TLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSR 253 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~---~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 253 (888)
.-.++.|+|..|.||||++..+..+. .. ... .++.+... .-...|+..++............++.+.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~~-~g~-kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-EY-ADV-KYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-HH-TTC-CEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-Hh-cCC-EEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 34789999999999999999988876 21 222 23333322 11123444455432222223344555555555544
Q ss_pred CcE-EEEEccCCCc--cchhhhCCCCCCCCCCcEEEEEecch
Q 046470 254 KEF-VLLLDDIWKP--INLKDMGVPLQNLNAGSKIVLTTRSV 292 (888)
Q Consensus 254 k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (888)
.++ +||+|.+... +..+.+ ..+.+ .|-.||+|.+..
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred CCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 444 9999999743 222222 11222 267788888854
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.63 E-value=0.029 Score=56.22 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccccc---CCCCEEEEEEecc-----hHHHHHHHcCCChh----h---hcCCCHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ---HHFDVVIWAAVST-----LQDDIGKRIGFSEN----W---WKKKSPE 241 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~-----l~~~i~~~l~~~~~----~---~~~~~~~ 241 (888)
.-.++.|+|++|+|||||+..+........ ..-..++|++... -...+++.++.... . ....+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 346999999999999999999987531100 1235788888763 12345555554321 0 0122333
Q ss_pred HH---HHHHHHHhc-cCcEEEEEccCCC
Q 046470 242 EK---AVDISSILS-RKEFVLLLDDIWK 265 (888)
Q Consensus 242 ~~---~~~l~~~l~-~k~~LlVlDdv~~ 265 (888)
+. ...+.+.+. .+.-+||+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 32 233445554 4677999998754
No 255
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.55 E-value=0.046 Score=53.75 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecc-----hHHHHHHHcCCChhh-------hcCCCH---H
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVST-----LQDDIGKRIGFSENW-------WKKKSP---E 241 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----l~~~i~~~l~~~~~~-------~~~~~~---~ 241 (888)
.-.++.|+|.+|+||||+|..+.. . .-..++|++... -...+...++..... ....+. .
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999999987 2 124677887652 122233333321110 011122 2
Q ss_pred HHHHHHHHHhccCcEEEEEccCCC
Q 046470 242 EKAVDISSILSRKEFVLLLDDIWK 265 (888)
Q Consensus 242 ~~~~~l~~~l~~k~~LlVlDdv~~ 265 (888)
+....++..+..+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 234444444444577999998754
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.54 E-value=0.013 Score=57.47 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 162 LLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 162 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+-+++|.+.+........+|+|+|+.|.|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455666655432456799999999999999999998876
No 257
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.53 E-value=0.028 Score=59.71 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhh---hcCCCHHHHHHHHHHHhc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENW---WKKKSPEEKAVDISSILS 252 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l~ 252 (888)
.-.++.|+|.+|+||||||..+..... ..-..++|++.. ......++.++...+. ....+.++....+....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987652 222467888877 2222345666654321 122345555555554443
Q ss_pred -cCcEEEEEccCCC
Q 046470 253 -RKEFVLLLDDIWK 265 (888)
Q Consensus 253 -~k~~LlVlDdv~~ 265 (888)
.+.-+||+|.+..
T Consensus 137 ~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 137 SGALDIIVIDSVAA 150 (349)
T ss_dssp TTCCSEEEEECGGG
T ss_pred cCCCCEEEEcChHh
Confidence 3467999998854
No 258
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.49 E-value=0.026 Score=59.44 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=53.1
Q ss_pred HHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec---chHHHHHHHcCCCh-hhhcCCCHH
Q 046470 166 RVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS---TLQDDIGKRIGFSE-NWWKKKSPE 241 (888)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~---~l~~~i~~~l~~~~-~~~~~~~~~ 241 (888)
++++.+..- ..-..++|+|..|+|||||++.+.+........++++ ++-++ +-..++.+.+.... ....+....
T Consensus 163 raID~~~pi-~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~~Ev~~~~~~~~~~vV~atadep~~ 240 (422)
T 3ice_A 163 RVLDLASPI-GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERPEEVTEMQRLVKGEVVASTFDEPAS 240 (422)
T ss_dssp HHHHHHSCC-BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCHHHHHHHHTTCSSEEEEECTTSCHH
T ss_pred eeeeeeeee-cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCChHHHHHHHHHhCeEEEEeCCCCCHH
Confidence 345555432 2345799999999999999999887652212234443 46666 22233333331100 000111111
Q ss_pred H------HHHHHHHHh--ccCcEEEEEccCCCc
Q 046470 242 E------KAVDISSIL--SRKEFVLLLDDIWKP 266 (888)
Q Consensus 242 ~------~~~~l~~~l--~~k~~LlVlDdv~~~ 266 (888)
. ..-.+.+++ +++.+||++||+...
T Consensus 241 ~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 241 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 1 111233344 578999999999653
No 259
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.44 E-value=0.053 Score=56.09 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhh-hcCCCHHHHHHHHHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENW-WKKKSPEEKAVDISS 249 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 249 (888)
..+++++|.+|+||||++..++.... . .-..+.++... ..+.......+.+-.. ....+..++.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~-~--~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK-K--KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH-H--TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H--CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 57999999999999999999988762 2 22345566554 1122334444442110 012345555444444
Q ss_pred HhccCcE-EEEEccC
Q 046470 250 ILSRKEF-VLLLDDI 263 (888)
Q Consensus 250 ~l~~k~~-LlVlDdv 263 (888)
.++.+.| ++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 4542333 7888865
No 260
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.41 E-value=0.0019 Score=61.89 Aligned_cols=105 Identities=14% Similarity=0.055 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-ch---HHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccC
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TL---QDDIGKRIGFSENWWKKKSPEEKAVDISSILSRK 254 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l---~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k 254 (888)
.++.|+|+.|+||||++..+..+. .. ... .++.+... +- ...+....+.........+.. .+.+.+.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~-~~-~g~-~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~~ 76 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY-KL-GKK-KVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEED 76 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH-HH-TTC-EEEEEEEC-----CCCEECC----CEECEEESSGG----GGGGGCCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-HH-CCC-eEEEEeeccccccCcccEEecCCCceeeEEECCHH----HHHHHhcCC
Confidence 478899999999999997766654 11 122 23333222 00 000111111111000111111 122233345
Q ss_pred cEEEEEccCCCc-cchhhhCCCCCCCCCCcEEEEEecch
Q 046470 255 EFVLLLDDIWKP-INLKDMGVPLQNLNAGSKIVLTTRSV 292 (888)
Q Consensus 255 ~~LlVlDdv~~~-~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (888)
.-+|++|.+... .+|......+.+ .|..|++|.+..
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLDL 113 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEEESB
T ss_pred CCEEEEECcccCCHHHHHHHHHHHH--CCCCEEEEeecc
Confidence 569999999764 344433222222 277899988853
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.34 E-value=0.02 Score=55.63 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHhhcC-CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 159 GQELLLYRVWKCITDQ-DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 159 Gr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|++.++++.+.+... .....+|+|.|+.|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3566777888877653 2345799999999999999999998765
No 262
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.32 E-value=0.037 Score=59.03 Aligned_cols=86 Identities=15% Similarity=0.150 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhh---hcCCCHHHHHHHHHHHhc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENW---WKKKSPEEKAVDISSILS 252 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l~ 252 (888)
.-.++.|.|.+|+||||||..+..... ..-..++|++.. ......+..++..... ....+.++....+....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 346899999999999999999887762 122468899887 2222245566654321 123455666666666554
Q ss_pred -cCcEEEEEccCCC
Q 046470 253 -RKEFVLLLDDIWK 265 (888)
Q Consensus 253 -~k~~LlVlDdv~~ 265 (888)
.+.-+||+|.+..
T Consensus 150 ~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 150 SGAIDVVVVDSVAA 163 (366)
T ss_dssp TTCCSEEEEECTTT
T ss_pred cCCCCEEEEeChHH
Confidence 3456999999853
No 263
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.30 E-value=0.065 Score=56.41 Aligned_cols=88 Identities=16% Similarity=0.241 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccccc---CCCCEEEEEEecc-----hHHHHHHHcCCChhh-------hcCCCHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ---HHFDVVIWAAVST-----LQDDIGKRIGFSENW-------WKKKSPE 241 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~-----l~~~i~~~l~~~~~~-------~~~~~~~ 241 (888)
.-.++.|+|.+|+||||+|..+........ ..-..++|++... -+.++++.++..... ....+.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 346899999999999999999887641110 0135788998762 223345566554321 1122333
Q ss_pred ---HHHHHHHHHhc--cCcEEEEEccCC
Q 046470 242 ---EKAVDISSILS--RKEFVLLLDDIW 264 (888)
Q Consensus 242 ---~~~~~l~~~l~--~k~~LlVlDdv~ 264 (888)
++...+...++ .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 23445555554 456789999875
No 264
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.30 E-value=0.018 Score=51.42 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=15.7
Q ss_pred cceeccccccccCCccccccCCCCCCcEEeccCCCCC
Q 046470 596 LRYLNLEHAYMLSIIPHQLISGFSKLEVLRLLGCGSN 632 (888)
Q Consensus 596 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 632 (888)
|++|+|++|++ ..+|.+.+..+++|++|++.+|...
T Consensus 33 l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 33 TTELVLTGNNL-TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCEEECCCCcC-CccChhhhhhccccCEEEecCCCee
Confidence 44444444432 3344433444444444555444443
No 265
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.23 E-value=0.092 Score=55.67 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccccc---CCCCEEEEEEecc-----hHHHHHHHcCCChhh-------hcCCCH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ---HHFDVVIWAAVST-----LQDDIGKRIGFSENW-------WKKKSP 240 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~-----l~~~i~~~l~~~~~~-------~~~~~~ 240 (888)
..-.++.|+|.+|+||||+|..++....... ..-..++|++... -+.+++..++..... ....+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 3457999999999999999999887641111 1235788998762 233455555544210 011122
Q ss_pred H---HHHHHHHHHhc---cCcEEEEEccCCC
Q 046470 241 E---EKAVDISSILS---RKEFVLLLDDIWK 265 (888)
Q Consensus 241 ~---~~~~~l~~~l~---~k~~LlVlDdv~~ 265 (888)
+ ++...+...++ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 2 33334445554 4556888888743
No 266
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.17 E-value=0.074 Score=55.15 Aligned_cols=85 Identities=22% Similarity=0.251 Sum_probs=48.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----c---hHHHHHHHcCCChhh-hcCCCHHHH-HHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS----T---LQDDIGKRIGFSENW-WKKKSPEEK-AVDI 247 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----~---l~~~i~~~l~~~~~~-~~~~~~~~~-~~~l 247 (888)
...+|.|+|++|+||||++..++... .. .-..+.++... . -+...++..+++.-. ....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l-~~--~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF-VD--EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH-HH--TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH-Hh--cCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999998876 22 22235555543 1 122344444432210 012233332 2344
Q ss_pred HHHhccCcEEEEEccCC
Q 046470 248 SSILSRKEFVLLLDDIW 264 (888)
Q Consensus 248 ~~~l~~k~~LlVlDdv~ 264 (888)
...+..+.-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 44455555688889664
No 267
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.02 E-value=0.028 Score=54.61 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=45.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcCCCh-------hhhcCCCHHHHHHHHHHHhc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIGFSE-------NWWKKKSPEEKAVDISSILS 252 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~~~~-------~~~~~~~~~~~~~~l~~~l~ 252 (888)
+|.|.|++|+||||.|+.+...+ ....++.++++++-+..-..-+ ..-...+.+-....+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~--------g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~ 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK--------GFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFP 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--------CCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--------CCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhc
Confidence 57899999999999999998876 1234565566654332211000 00012233445556667775
Q ss_pred cCcEEEEEccCCC
Q 046470 253 RKEFVLLLDDIWK 265 (888)
Q Consensus 253 ~k~~LlVlDdv~~ 265 (888)
.... +|||..-.
T Consensus 74 ~~~~-~ilDGfPR 85 (206)
T 3sr0_A 74 KHGN-VIFDGFPR 85 (206)
T ss_dssp SSSC-EEEESCCC
T ss_pred cCCc-eEecCCch
Confidence 5443 57898753
No 268
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.91 E-value=0.021 Score=61.39 Aligned_cols=47 Identities=26% Similarity=0.232 Sum_probs=37.0
Q ss_pred cccchHHHHHHHHHHhh-------------cCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCIT-------------DQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|.+..++.+...+. ......+.|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899998888888773 111134578999999999999999999876
No 269
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.87 E-value=0.079 Score=55.51 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+++|+|+.|+||||+++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998876
No 270
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.83 E-value=0.032 Score=49.75 Aligned_cols=54 Identities=30% Similarity=0.421 Sum_probs=46.2
Q ss_pred cEEEcCCCCCc--ccChhhhcccCCCEEeccCCcccccCcc-cccCCccceeccccccc
Q 046470 551 RVLSLGSNALS--KLPSGISSLVSLHHLDLSWTEITGLPQE-LKALEKLRYLNLEHAYM 606 (888)
Q Consensus 551 ~~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~l~~~~~ 606 (888)
.+++.+++.++ .+|..+. .+|++|+|++|+|+.+|.. +..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47899999998 8887643 4799999999999999765 78899999999999865
No 271
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.82 E-value=0.087 Score=50.38 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHHHHHHcC
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDDIGKRIG 229 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~i~~~l~ 229 (888)
.+|.|.|++|+||||+|+.+.... .. ... ...+++.+++.+.++..-+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l-~~-~g~-~~~~i~~~~~~r~~~~~~~ 51 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL-RK-EGV-NYKMVSFGSVMFEVAKEEN 51 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-HT-TTC-CCEEEEHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-Hh-cCc-ceEEEehHHHHHHHHhccC
Confidence 579999999999999999998876 11 111 1234566666666554433
No 272
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.82 E-value=0.13 Score=55.91 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.74 E-value=0.067 Score=53.35 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+..-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998765
No 274
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.73 E-value=0.029 Score=53.64 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=70.1
Q ss_pred HhcCCcccEEEcCCC-CCc-----ccChhhhcccCCCEEeccCCcccc-----cCcccccCCccceeccccccccCC---
Q 046470 544 FQSMSSLRVLSLGSN-ALS-----KLPSGISSLVSLHHLDLSWTEITG-----LPQELKALEKLRYLNLEHAYMLSI--- 609 (888)
Q Consensus 544 ~~~l~~L~~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~i~~-----Lp~~i~~L~~L~~L~l~~~~~l~~--- 609 (888)
+..-+.|+.|+|+++ .|. .+-..+..-.+|+.|+|++|.|.. |...+..-+.|++|+|++|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344567788888775 665 234455666778888888887764 444556667788888888865221
Q ss_pred -ccccccCCCCCCcEEeccCCCCCCcccccccCcccccchhhHHHHhhcCCCCceEEEEEech
Q 046470 610 -IPHQLISGFSKLEVLRLLGCGSNCVTVTEEEGNVLCDDAGLLMKELLGLKHLNFLSWSFRSS 671 (888)
Q Consensus 610 -lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 671 (888)
+-.. +..=+.|++|++.++..... + ..........|..-+.|+.|+++++..
T Consensus 117 ala~a-L~~N~tL~~L~L~n~~~~~i--g-------~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRS-TLVTQSIVEFKADNQRQSVL--G-------NQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHH-TTTTCCCSEEECCCCSSCCC--C-------HHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHH-HhhCCceeEEECCCCcCcCc--C-------HHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1111 44456688888876533000 0 000112344566677888888776543
No 275
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.71 E-value=0.057 Score=54.19 Aligned_cols=38 Identities=29% Similarity=0.224 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
-.++.|.|.+|+||||+|..++.... ..-..++|++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcc
Confidence 46899999999999999988876652 122457788776
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.63 E-value=0.038 Score=56.96 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999988776
No 277
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.62 E-value=0.035 Score=58.82 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=37.4
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.++|++..++.+...+... .-+.++|++|+|||++|+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHh
Confidence 45899999999988888662 358899999999999999998865
No 278
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.61 E-value=0.065 Score=53.93 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
.-.+++|+|+.|+|||||++.+.... . ...-...+++...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~-~-~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-A-EEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-H-HHHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-H-HhCCCeEEEEEcc
Confidence 34689999999999999999988432 1 0112345566554
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.60 E-value=0.018 Score=54.64 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998876
No 280
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.56 E-value=0.074 Score=57.79 Aligned_cols=96 Identities=23% Similarity=0.390 Sum_probs=56.7
Q ss_pred HHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCC------hh
Q 046470 167 VWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFS------EN 233 (888)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~------~~ 233 (888)
+++.|..- .+-.-++|+|.+|+|||+|+..+.++.. +.+-+.++++-++ ++.+.+...-.+. ..
T Consensus 143 ~ID~l~pi-gkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 143 VVDLLAPY-AKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHSCE-ETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEeccccc-ccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 45555431 2235689999999999999999988752 3445677777777 4445554432221 00
Q ss_pred ----hhcCCCHH------HHHHHHHHHhc---cCcEEEEEccCCC
Q 046470 234 ----WWKKKSPE------EKAVDISSILS---RKEFVLLLDDIWK 265 (888)
Q Consensus 234 ----~~~~~~~~------~~~~~l~~~l~---~k~~LlVlDdv~~ 265 (888)
...+.... ...-.+.++++ ++.+||++||+..
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00111111 12223455553 6899999999853
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.49 E-value=0.019 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998775
No 282
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.45 E-value=0.053 Score=59.09 Aligned_cols=38 Identities=42% Similarity=0.713 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
..++|+|..|+|||||+..+..+. . ..+.+.++++.++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~-~-~~~~~i~V~~~iG 189 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI-A-QEHGGISVFAGVG 189 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH-H-HHTCCCEEEEEES
T ss_pred CEEEEECCCCCCccHHHHHHHhhh-h-hccCcEEEEeeec
Confidence 358899999999999999998876 2 2223445666666
No 283
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.42 E-value=0.15 Score=55.75 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
..++|.++|.+|+||||++..++... ..+.. ..+.-++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l-~~~~G-~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL-REKHK-KKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH-HHTSC-CCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHhcC-CeEEEEecC
Confidence 46799999999999999999999887 22212 234555554
No 284
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.39 E-value=0.11 Score=51.44 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccc--cc-CCCCEEEEEEec
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCH--EQ-HHFDVVIWAAVS 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~-~~f~~~~wv~~~ 218 (888)
.-.+++|+|+.|+|||||++.+...... .. ......+|+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 3479999999999999999999864311 01 124467888765
No 285
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.33 E-value=0.012 Score=62.63 Aligned_cols=112 Identities=12% Similarity=0.151 Sum_probs=61.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccCc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRKE 255 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~ 255 (888)
...+++|+|+.|.||||+.+.+..... .. .-..++.+.-. +... ......-...............+...|...+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~-~~-~~~~i~t~ed~~e~~~--~~~~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN-NT-KYHHILTIEDPIEFVH--ESKKCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH-HH-CCCEEEEEESSCCSCC--CCSSSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc-CC-CCcEEEEccCcHHhhh--hccccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 345999999999999999999877651 11 01122222111 1000 0000000000001111234447888888999
Q ss_pred EEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhhh
Q 046470 256 FVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDVC 295 (888)
Q Consensus 256 ~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 295 (888)
=+|++|++.+.+.+..+... ...|.-|++||-..+.+
T Consensus 198 dvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred CEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 99999999876655443222 12355688888875443
No 286
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.32 E-value=0.097 Score=57.12 Aligned_cols=96 Identities=23% Similarity=0.389 Sum_probs=57.1
Q ss_pred HHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCC-------h
Q 046470 167 VWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFS-------E 232 (888)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~-------~ 232 (888)
+++.|..- .+-.-++|+|..|+|||+|+..+.++.. +.+-+.++++-++ ++.+.+...-.+. .
T Consensus 155 vID~l~pi-gkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 155 VVNLLAPY-RRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp THHHHSCC-CTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred Eeeeeccc-ccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 34555431 2234589999999999999999988752 3455777888777 4444444321121 0
Q ss_pred h----hhcCCC------HHHHHHHHHHHhc---cCcEEEEEccCCC
Q 046470 233 N----WWKKKS------PEEKAVDISSILS---RKEFVLLLDDIWK 265 (888)
Q Consensus 233 ~----~~~~~~------~~~~~~~l~~~l~---~k~~LlVlDdv~~ 265 (888)
. ...+.. .....-.+.++++ ++.+||++||+..
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0 001111 1122334566664 5789999999853
No 287
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.32 E-value=0.031 Score=62.22 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=37.4
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.++|++..++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 35799999998888877652 368899999999999999999876
No 288
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.29 E-value=0.11 Score=56.31 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChhhh-cCCCHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSENWW-KKKSPEEKAVDIS 248 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 248 (888)
...+|.|+|.+|+||||++..++... . ..-..+..+... ..+.......+++.-.. ...+..++.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l-~--~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY-K--GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH-H--TTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 35789999999999999999999887 2 222345555544 11223334444432110 1234445444344
Q ss_pred HHhccCcE-EEEEccC
Q 046470 249 SILSRKEF-VLLLDDI 263 (888)
Q Consensus 249 ~~l~~k~~-LlVlDdv 263 (888)
+.++.+.| ++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 44432334 6777754
No 289
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.27 E-value=0.1 Score=53.84 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+++++|++|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998776
No 290
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.24 E-value=0.025 Score=54.88 Aligned_cols=26 Identities=35% Similarity=0.252 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.|+|+.|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998775
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.18 E-value=0.029 Score=53.94 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|+||||+++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999997753
No 292
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.17 E-value=0.11 Score=54.41 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----chHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS----TLQDDIGK 226 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----~l~~~i~~ 226 (888)
.-.++.|.|.+|+||||+|..++.... .++ ..++|++.. ++...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLEMGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESSSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECCCCHHHHHHHHHH
Confidence 446899999999999999999987762 222 678888876 44444443
No 293
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.17 E-value=0.026 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.16 E-value=0.047 Score=54.77 Aligned_cols=44 Identities=20% Similarity=0.146 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 159 GQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+....+.++.............|.|.|++|+||||+|+.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444444444443322456789999999999999999998765
No 295
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.14 E-value=0.028 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNN 200 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~ 200 (888)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 296
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.14 E-value=0.18 Score=54.76 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.++|++|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 297
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.08 E-value=0.051 Score=53.77 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 162 LLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 162 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+..+.+...+.. .....|.|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334444444444 467899999999999999999998774
No 298
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.06 E-value=0.058 Score=57.08 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 299
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.05 E-value=0.043 Score=59.23 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=36.1
Q ss_pred CcccchHHHHHHHHHHhh----c------------------------CCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCIT----D------------------------QDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~----~------------------------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|.+..++.+...+. . .......+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 357898888888877662 0 01123568899999999999999998876
No 300
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.03 E-value=0.061 Score=56.35 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHHhhc--CCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 158 VGQELLLYRVWKCITD--QDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 158 vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
|+.+.-.+++++.+.. ..+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4555666667766642 12456779999999999999999988765
No 301
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.00 E-value=0.18 Score=54.36 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccc---cCCCCEEEEEEecc-----hHHHHHHHcCCChhh-------hcCCCHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHE---QHHFDVVIWAAVST-----LQDDIGKRIGFSENW-------WKKKSPE 241 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~-----l~~~i~~~l~~~~~~-------~~~~~~~ 241 (888)
.-.++.|+|++|+|||||+..++-..... ...-..++|++... -...+++.++..... ....+..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 34699999999999999999765332110 11345688888762 234466666654320 1122222
Q ss_pred H---HHHHHHHHhc-cCcEEEEEccCC
Q 046470 242 E---KAVDISSILS-RKEFVLLLDDIW 264 (888)
Q Consensus 242 ~---~~~~l~~~l~-~k~~LlVlDdv~ 264 (888)
. ....+...+. .+.-+||+|.+.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 2233333332 456788899864
No 302
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.97 E-value=0.03 Score=58.40 Aligned_cols=27 Identities=30% Similarity=0.685 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+..+||+|.|-|||||||.+..+....
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 467999999999999999999988877
No 303
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.95 E-value=0.025 Score=53.29 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 304
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.94 E-value=0.029 Score=53.55 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998775
No 305
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.79 E-value=0.17 Score=53.05 Aligned_cols=88 Identities=13% Similarity=0.194 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccccc---------CCC----CEEEEEEecc-----hHHHHHHHcCCChhh----
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQ---------HHF----DVVIWAAVST-----LQDDIGKRIGFSENW---- 234 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---------~~f----~~~~wv~~~~-----l~~~i~~~l~~~~~~---- 234 (888)
.-.++.|+|.+|+||||+|..++....... ..- ..++|++... -+.++++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 457999999999999999999886531110 111 4788888762 222345555544210
Q ss_pred ---hcCCCHHH---HHHHHHHHhcc--CcEEEEEccCC
Q 046470 235 ---WKKKSPEE---KAVDISSILSR--KEFVLLLDDIW 264 (888)
Q Consensus 235 ---~~~~~~~~---~~~~l~~~l~~--k~~LlVlDdv~ 264 (888)
....+.++ +...+.+.++. +.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 11123332 33445555543 45588888774
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.78 E-value=0.038 Score=53.55 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|+|+.|.||||+++.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998876
No 307
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.76 E-value=0.12 Score=54.79 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccc--cCC-CCEEEEEEecch-----HHHHHHHcCCChhh------h-cCCC--
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHE--QHH-FDVVIWAAVSTL-----QDDIGKRIGFSENW------W-KKKS-- 239 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~~-f~~~~wv~~~~l-----~~~i~~~l~~~~~~------~-~~~~-- 239 (888)
.-.++.|+|+.|+|||||+..+....... .+. -..++|++.... ...+++.++..... + ...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 45799999999999999999998765111 111 135588887522 22344444432210 0 1111
Q ss_pred -HHHHHHHHHHHhc------cCcEEEEEccCCC
Q 046470 240 -PEEKAVDISSILS------RKEFVLLLDDIWK 265 (888)
Q Consensus 240 -~~~~~~~l~~~l~------~k~~LlVlDdv~~ 265 (888)
..++...+...+. .+.-+||+|.+-.
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 2233444455554 4677999998854
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.74 E-value=0.034 Score=53.46 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999876
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.66 E-value=0.038 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.|.|++|+||||+|+.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998765
No 310
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.65 E-value=0.041 Score=53.70 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|+|+|+.|+||||+++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998765
No 311
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.63 E-value=0.073 Score=55.43 Aligned_cols=45 Identities=24% Similarity=0.171 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHHhhcC--CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 158 VGQELLLYRVWKCITDQ--DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 158 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|....+..+...+... .....+|+|.|+.|+||||+|+.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45555555555444442 2456699999999999999999997765
No 312
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.60 E-value=0.055 Score=53.31 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 159 GQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.++..+.+...+.. ...++|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344455555555544 467899999999999999999988765
No 313
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.60 E-value=0.03 Score=54.45 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|.|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998775
No 314
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.57 E-value=0.14 Score=53.78 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
.-.++.|.|.+|+||||+|..++..... +-..++|++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE 83 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE 83 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC
Confidence 3468999999999999999999887622 33467888876
No 315
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.55 E-value=0.8 Score=50.51 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
.-.++.|.|.+|+||||+|..++.... .. .-..++|++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~-~~-~g~~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA-TK-TNENVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH-HH-SSCCEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-Hh-CCCcEEEEECC
Confidence 346899999999999999999988762 11 22367888866
No 316
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.54 E-value=0.042 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|+|+|+.|+||||+++.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998764
No 317
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.53 E-value=0.034 Score=52.88 Aligned_cols=25 Identities=40% Similarity=0.349 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 318
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.52 E-value=0.026 Score=53.69 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.|.|+|+.|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999997664
No 319
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.49 E-value=0.17 Score=52.18 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----c---hHHHHHHHcCCChhhh-cCCCHHHHHH-HH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS----T---LQDDIGKRIGFSENWW-KKKSPEEKAV-DI 247 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----~---l~~~i~~~l~~~~~~~-~~~~~~~~~~-~l 247 (888)
...+++|+|.+|+||||++..++... .. .-..+.++... . -+..+....+++.-.. ...++.++.. .+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~-~~--~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY-KG--KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH-HH--TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 34689999999999999999998876 22 22345555543 1 1223334444332110 1234445533 33
Q ss_pred HHHhccCcEEEEEccC
Q 046470 248 SSILSRKEFVLLLDDI 263 (888)
Q Consensus 248 ~~~l~~k~~LlVlDdv 263 (888)
......+.=++|+|--
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333345567888876
No 320
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.49 E-value=0.043 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|+|+|+.|+||||+++.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999997754
No 321
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.46 E-value=0.04 Score=55.67 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+|.|.|+.|+||||+|+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998765
No 322
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.44 E-value=0.041 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.36 E-value=0.045 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNN 200 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~ 200 (888)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.36 E-value=0.035 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998876
No 325
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.35 E-value=0.045 Score=51.82 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 326
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.34 E-value=0.04 Score=53.59 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998765
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.33 E-value=0.086 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 328
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.33 E-value=0.033 Score=59.46 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=33.7
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|.+..++.+...+.. ....-+.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~--~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVD--PGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHC--GGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhC--CCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3589998866654444432 222348899999999999999999876
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.29 E-value=0.045 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 330
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.29 E-value=0.05 Score=53.16 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...++|.|.|++|+||||.|+.+...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998876
No 331
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.29 E-value=0.17 Score=48.35 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHH-HHHHHcCCChhhh------cCC---CHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQD-DIGKRIGFSENWW------KKK---SPEEKAVD 246 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~-~i~~~l~~~~~~~------~~~---~~~~~~~~ 246 (888)
...+|+|+|+.|+||+|+|..+.+.. . ++.+.-+..++..+ ..+...++..... ... ....+...
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~---g--~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~ 84 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL---G--ADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEE 84 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH---C--TTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc---C--CCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHH
Confidence 45799999999999999999986643 1 12233345555555 4565555432110 000 11112222
Q ss_pred HHHH---------hcc-CcEEEEEccCCCccchhhhCC
Q 046470 247 ISSI---------LSR-KEFVLLLDDIWKPINLKDMGV 274 (888)
Q Consensus 247 l~~~---------l~~-k~~LlVlDdv~~~~~~~~l~~ 274 (888)
+++. +.. ..-.+|+|||....+.+.+..
T Consensus 85 ~R~~d~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~ 122 (202)
T 3ch4_B 85 KRQADPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFRE 122 (202)
T ss_dssp HHHHCTTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHH
Confidence 2221 111 112789999998887776643
No 332
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.28 E-value=0.037 Score=52.94 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 333
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.25 E-value=0.054 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|.|+.|+||||+|+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998765
No 334
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.24 E-value=0.044 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.639 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998876
No 335
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.21 E-value=0.051 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 336
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.19 E-value=0.044 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVN 199 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~ 199 (888)
-.+++|+|+.|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999644
No 337
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.18 E-value=0.053 Score=50.52 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++++|+|..|+||||++..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998876
No 338
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.16 E-value=0.05 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.|.|+.|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 339
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.13 E-value=0.057 Score=52.32 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
....+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999763
No 340
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.07 E-value=0.057 Score=51.59 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.07 E-value=0.057 Score=52.62 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|+|+.|+||||+|+.+....
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999997653
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.06 E-value=0.053 Score=52.14 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 343
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.05 E-value=0.055 Score=52.90 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 344
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.05 E-value=0.043 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999997754
No 345
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.04 E-value=0.057 Score=52.53 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998764
No 346
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.03 E-value=0.051 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNN 200 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~ 200 (888)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.02 E-value=0.039 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999998865
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.99 E-value=0.055 Score=51.90 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998764
No 349
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.98 E-value=0.073 Score=57.89 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=37.0
Q ss_pred CcccchHHHHHHHHHHhhcC------------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQ------------DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|.+..++.+...+... ....+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899998888887666321 1134568899999999999999998876
No 350
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.98 E-value=0.11 Score=55.42 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 164 LYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++.+.+........+|+|+|.+|+||||++..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555555444677899999999999999999988765
No 351
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.96 E-value=0.059 Score=54.73 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 352
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.86 E-value=0.056 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 353
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.86 E-value=0.11 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||.+.+..-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4689999999999999999998754
No 354
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.82 E-value=0.059 Score=51.38 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..|.+.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 355
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.77 E-value=0.055 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|+|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 356
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.75 E-value=0.05 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 357
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.74 E-value=0.089 Score=53.12 Aligned_cols=41 Identities=32% Similarity=0.312 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcC---CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 162 LLLYRVWKCITDQ---DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 162 ~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...++++..+... .....+|.|+|++|+||||+|+.+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3344444444332 2345789999999999999999998765
No 358
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.71 E-value=0.063 Score=52.26 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNN 200 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~ 200 (888)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 359
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.68 E-value=0.062 Score=52.48 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 360
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.68 E-value=0.065 Score=51.23 Aligned_cols=107 Identities=13% Similarity=0.008 Sum_probs=67.8
Q ss_pred CCCchhhhhhccC-Ccccc----cchHHhcCCcccEEEcCCCCCc-----ccChhhhcccCCCEEeccCCcccc-----c
Q 046470 522 TSPRLITLLLIAN-SIDEI----TDGFFQSMSSLRVLSLGSNALS-----KLPSGISSLVSLHHLDLSWTEITG-----L 586 (888)
Q Consensus 522 ~~~~Lr~L~l~~n-~l~~~----~~~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~i~~-----L 586 (888)
.-+.|+.|++++| .+... ....+..-+.|+.|+|++|.|. .+-..+..-..|++|+|++|.|.. |
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666654 44321 1223556678889999998887 344556667789999999998875 4
Q ss_pred CcccccCCccceeccccccc---cC----CccccccCCCCCCcEEeccCC
Q 046470 587 PQELKALEKLRYLNLEHAYM---LS----IIPHQLISGFSKLEVLRLLGC 629 (888)
Q Consensus 587 p~~i~~L~~L~~L~l~~~~~---l~----~lp~~~i~~L~~L~~L~l~~~ 629 (888)
-+.+..-+.|++|+|++|.. .. .+.. ++..=++|++|++..+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCC
Confidence 45566667799999986521 11 1111 1344578888888754
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.67 E-value=0.07 Score=51.70 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.|.|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998765
No 362
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.64 E-value=0.16 Score=52.96 Aligned_cols=39 Identities=36% Similarity=0.413 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
...+|+|+|.+|+||||++..++... .. .-..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l-~~--~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY-AE--LGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH-HH--TTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH--CCCeEEEEeCC
Confidence 45799999999999999999998876 22 22335555543
No 363
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.61 E-value=0.095 Score=50.09 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 164 LYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+..+..++.. -+....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445555543 2334579999999999999999998876
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.55 E-value=0.071 Score=53.82 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998764
No 365
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.55 E-value=0.068 Score=53.75 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|+|+|+.|+||||+++.+....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998654
No 366
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.54 E-value=0.046 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998765
No 367
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.52 E-value=0.12 Score=55.94 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=47.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccccCCCC----EEEEEEec-------chHHHHHHHcCCChh----hhcCCCHHH--
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNFCHEQHHFD----VVIWAAVS-------TLQDDIGKRIGFSEN----WWKKKSPEE-- 242 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~----~~~wv~~~-------~l~~~i~~~l~~~~~----~~~~~~~~~-- 242 (888)
-++|.|..|+|||+|+.++.+.. . .+-+ .++++-++ ++.+.+...-.+... ...+.....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~-~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQA-T--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHC-B--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHH-H--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 47899999999999999998876 2 2223 55666665 344444332111100 001122211
Q ss_pred ----HHHHHHHHhc---cCcEEEEEccCCC
Q 046470 243 ----KAVDISSILS---RKEFVLLLDDIWK 265 (888)
Q Consensus 243 ----~~~~l~~~l~---~k~~LlVlDdv~~ 265 (888)
....+.++++ ++.+||++||+..
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1224566664 6899999999954
No 368
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.48 E-value=0.071 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 369
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.47 E-value=0.068 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 370
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.41 E-value=0.39 Score=50.59 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=33.5
Q ss_pred HHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 166 RVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
++++.+..- ..-.-++|+|.+|+|||+|+..+.+........+.+ +++-++
T Consensus 164 raID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIG 214 (427)
T 3l0o_A 164 RLIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLID 214 (427)
T ss_dssp HHHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECS
T ss_pred hhhhhcccc-cCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEec
Confidence 456666542 233568999999999999999998875211223333 456665
No 371
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.41 E-value=0.079 Score=48.94 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++++|+.|.|||||++.+..-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998764
No 372
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.38 E-value=0.069 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 373
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.38 E-value=0.08 Score=55.14 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|+|+.|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999999999999998865
No 374
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.33 E-value=0.074 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998875
No 375
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.25 E-value=0.086 Score=52.93 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|+|.|+.|+||||+++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999997754
No 376
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.19 E-value=0.077 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 377
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.19 E-value=0.064 Score=52.76 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.18 E-value=0.084 Score=50.60 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|+|+.|+||||+|+.+....
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999997763
No 379
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.17 E-value=0.55 Score=62.52 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+-|.++|++|+|||++|+.+....
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC
Confidence 467899999999999997776653
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.17 E-value=0.076 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 381
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.10 E-value=0.09 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+++|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 382
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.07 E-value=0.084 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.06 E-value=0.08 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 384
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.03 E-value=0.089 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998665
No 385
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.01 E-value=0.091 Score=51.58 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998765
No 386
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.99 E-value=0.64 Score=51.57 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|+|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 387
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.97 E-value=0.13 Score=56.22 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|.|+|.+|+||||++..+....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 388
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.95 E-value=0.39 Score=54.57 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+++.|.|.+|.||||++..+....
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999998876
No 389
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.93 E-value=0.17 Score=52.31 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998876
No 390
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.91 E-value=0.082 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997765
No 391
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.88 E-value=0.18 Score=59.24 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=57.9
Q ss_pred CcccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecchHHH
Q 046470 155 HTVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTLQDD 223 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l~~~ 223 (888)
..+.|.++.++++.+.+.-. -...+-|.++|++|.|||.+|+++++.. ... ++.++ ..+
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~--~~~ 546 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK--GPE 546 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC--HHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec--cch
Confidence 35678888887777665321 1223557899999999999999999886 222 22222 011
Q ss_pred HHHHcCCChhhhcCCCHHHHHHHHHHHhccCcEEEEEccCCC
Q 046470 224 IGKRIGFSENWWKKKSPEEKAVDISSILSRKEFVLLLDDIWK 265 (888)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 265 (888)
+... +...+...+...+...-+..+.+|++|+++.
T Consensus 547 l~s~-------~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 547 LLTM-------WFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HHTT-------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred hhcc-------ccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 1111 1333444444444444456789999999974
No 392
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.87 E-value=0.076 Score=52.39 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....|.|.|++|+||||+|+.+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998876
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.85 E-value=0.092 Score=50.89 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998765
No 394
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.83 E-value=0.088 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 395
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.82 E-value=0.088 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997764
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.75 E-value=0.11 Score=49.18 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+|+|.|+.|+||||+++.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998865
No 397
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.63 E-value=0.085 Score=50.43 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+++|+|+.|+|||||++.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998865
No 398
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.59 E-value=0.05 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.768 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998776
No 399
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.49 E-value=0.11 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|.|.|+.|+||||+|+.+....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 400
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.47 E-value=0.064 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++++|+|..|+|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 401
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.46 E-value=0.11 Score=51.82 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.. .+++|+|+.|.|||||.+.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 799999999999999999998754
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.45 E-value=0.12 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVN 199 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~ 199 (888)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 403
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.43 E-value=0.11 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998875
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.40 E-value=0.13 Score=50.58 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNN 200 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~ 200 (888)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 405
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.35 E-value=0.12 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++++|+|..|+|||||+..+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 36799999999999999999998765
No 406
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.29 E-value=0.22 Score=51.77 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|+|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998765
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.22 E-value=0.23 Score=52.56 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35699999999999999999998876
No 408
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.20 E-value=0.13 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998765
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.17 E-value=0.095 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+|+|+|+.|+||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998865
No 410
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.15 E-value=0.39 Score=52.65 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec----chHHHHH
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS----TLQDDIG 225 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----~l~~~i~ 225 (888)
.-.++.|.|.+|+||||+|..++.+.. .+ -..++|++.. ++...+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a-~~--g~~vl~fSlEms~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMS-DN--DDVVNLHSLEMGKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHH-HT--TCEEEEECSSSCTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHH-Hc--CCEEEEEECCCCHHHHHHHHH
Confidence 346899999999999999999988862 22 3467888776 4444443
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.12 E-value=0.12 Score=51.14 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 412
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.09 E-value=0.56 Score=51.63 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=30.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
.-.++.|.|.+|+||||+|..++.... ...-..++|++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g~~vl~~slE 238 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA--LKEGVGVGIYSLE 238 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEECC
Confidence 346899999999999999999988762 1222457888876
No 413
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.06 E-value=0.14 Score=53.34 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998765
No 414
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.94 E-value=0.13 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|.|+|+.|+||||||+.++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998875
No 415
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.93 E-value=0.11 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|+|||||++.+..-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997654
No 416
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.93 E-value=0.11 Score=51.65 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 417
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.92 E-value=0.082 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=16.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-hcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVN-NNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~-~~~ 202 (888)
-.+++|+|+.|+||||+++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 543
No 418
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.89 E-value=0.25 Score=52.72 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 166 RVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+++.+.-.-+...+++|+|+.|.|||||++.+....
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444433222455799999999999999999998754
No 419
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.82 E-value=0.38 Score=61.83 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecch-HHHHHHHcCCChhhh---cCCCHHHHHHHHHHHhc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVSTL-QDDIGKRIGFSENWW---KKKSPEEKAVDISSILS 252 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~l-~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~l~ 252 (888)
..+.|.|+|++|+|||+||.++.... ...-..++|+++... ....++.++.+.+.+ ...+.++....+....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46789999999999999999998876 233345777877722 222266666332111 12233445555554443
Q ss_pred -cCcEEEEEccCC
Q 046470 253 -RKEFVLLLDDIW 264 (888)
Q Consensus 253 -~k~~LlVlDdv~ 264 (888)
.+.-+||+|.+.
T Consensus 1503 ~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVA 1515 (2050)
T ss_dssp HTCCSEEEESCGG
T ss_pred cCCCCEEEEcChh
Confidence 567799999995
No 420
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.79 E-value=0.13 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998765
No 421
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.75 E-value=0.13 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 422
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.73 E-value=0.13 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999998875
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.72 E-value=0.14 Score=50.79 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....|.|.|+.|+||||+|+.+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998876
No 424
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.69 E-value=0.11 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
.+++|+|+.|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998765
No 425
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.60 E-value=0.18 Score=52.52 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=29.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
...++|+|+|-||+||||+|..++....+ . -..++-|+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~--G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L--GKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEES
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-C--CCeEEEEeCC
Confidence 45789999999999999999999888732 2 2245556554
No 426
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.60 E-value=0.13 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 427
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.53 E-value=0.27 Score=49.32 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 164 LYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..-+..||....+....|.++|++|.|||.+|.++++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344666666532345679999999999999999998853
No 428
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.52 E-value=0.19 Score=57.93 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 156 TVVGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccC
Confidence 5799998888887777652 478999999999999999998876
No 429
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.40 E-value=0.13 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3689999999999999999987654
No 430
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.38 E-value=0.15 Score=48.77 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998764
No 431
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.32 E-value=0.19 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999998765
No 432
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.32 E-value=0.22 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.155 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.|.+.|.||+||||+|..+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 357889999999999999988876
No 433
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.31 E-value=0.14 Score=51.95 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 434
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.30 E-value=0.16 Score=51.39 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....++.+.|.||+||||++..+....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998765
No 435
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.30 E-value=0.85 Score=51.10 Aligned_cols=40 Identities=15% Similarity=0.028 Sum_probs=31.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
.-.++.|.|.+|+||||+|..++.+.. ..+-..++|++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEecc
Confidence 446899999999999999999988762 2223467888876
No 436
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.21 E-value=0.17 Score=54.62 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 166 RVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
++.+.|........+++|+|..|+|||||.+.+...
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 344444332245679999999999999999999884
No 437
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.13 E-value=0.12 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.679 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.+++|+|+.|.|||||++.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999997654
No 438
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.11 E-value=0.79 Score=49.97 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=45.8
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHhccccccCCCCEEEEEEec-------chHHHHHHHcCCChh----hhcCCCH-HH---
Q 046470 179 GIIGLYGIGGVGKTTLL-TQVNNNFCHEQHHFDVVIWAAVS-------TLQDDIGKRIGFSEN----WWKKKSP-EE--- 242 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~-------~l~~~i~~~l~~~~~----~~~~~~~-~~--- 242 (888)
.-++|.|..|+|||+|| ..+.+.. ..-..++++-++ ++.+.+...-.+... ...+... ..
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 45889999999999996 4665542 222245677776 344444332111110 0011111 11
Q ss_pred --HHHHHHHHh--ccCcEEEEEccCCC
Q 046470 243 --KAVDISSIL--SRKEFVLLLDDIWK 265 (888)
Q Consensus 243 --~~~~l~~~l--~~k~~LlVlDdv~~ 265 (888)
....+.+++ +++.+||++||+..
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 112344444 57899999999854
No 439
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.11 E-value=0.16 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
-.+++|+|+.|.|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 440
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.10 E-value=0.14 Score=51.01 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997754
No 441
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.09 E-value=0.19 Score=46.17 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+-|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988754
No 442
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.06 E-value=0.15 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999987654
No 443
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.04 E-value=0.099 Score=53.88 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 444
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.04 E-value=0.15 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 445
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.02 E-value=0.15 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||.+.+..-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998765
No 446
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.00 E-value=0.15 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||.+.+..-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997654
No 447
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.98 E-value=0.17 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
.-.+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 448
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.92 E-value=0.21 Score=53.91 Aligned_cols=86 Identities=14% Similarity=0.224 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccccc--------CCCC-EEEEEEec-------chHHHHHHHcCCCh-----hhhcC
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQ--------HHFD-VVIWAAVS-------TLQDDIGKRIGFSE-----NWWKK 237 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~~~-------~l~~~i~~~l~~~~-----~~~~~ 237 (888)
.-++|.|..|+|||+|+.++.+.. ... ++-+ .++++-++ ++.+.+...-.+.. .....
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 347899999999999999998876 221 1222 55666665 33443332110100 00112
Q ss_pred CCHHHH-----HHHHHHHhc---cCcEEEEEccCCC
Q 046470 238 KSPEEK-----AVDISSILS---RKEFVLLLDDIWK 265 (888)
Q Consensus 238 ~~~~~~-----~~~l~~~l~---~k~~LlVlDdv~~ 265 (888)
...... ...+.++++ ++.+||++||+..
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 222222 224566664 6899999999854
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.90 E-value=0.18 Score=46.78 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 450
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.89 E-value=0.16 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 451
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.89 E-value=0.75 Score=50.32 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCcHHHHHH-HHHhccccccCCCC-EEEEEEec---chHHHHHHHcCCCh---------hhhcCCC-----
Q 046470 179 GIIGLYGIGGVGKTTLLT-QVNNNFCHEQHHFD-VVIWAAVS---TLQDDIGKRIGFSE---------NWWKKKS----- 239 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~~---~l~~~i~~~l~~~~---------~~~~~~~----- 239 (888)
.-++|+|..|+|||+||. .+.+.. . -+ .++++-++ .-..++.+.+.-.+ .......
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----G-QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----T-TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----c-CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 457899999999999964 666653 2 34 45666666 22223333331100 0001111
Q ss_pred HHHHHHHHHHHh--ccCcEEEEEccCCC
Q 046470 240 PEEKAVDISSIL--SRKEFVLLLDDIWK 265 (888)
Q Consensus 240 ~~~~~~~l~~~l--~~k~~LlVlDdv~~ 265 (888)
.......+.+++ +++.+||++||+..
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 112222344444 57899999999853
No 452
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.85 E-value=0.16 Score=51.20 Aligned_cols=26 Identities=38% Similarity=0.552 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 453
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.83 E-value=0.18 Score=47.83 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-+.|.|.|+.|+||||||.++....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998765
No 454
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.82 E-value=0.33 Score=52.80 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=48.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccC--CCCEEEEEEec-------chHHHHHHHcCCChh----hhcCCCHHH---
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQH--HFDVVIWAAVS-------TLQDDIGKRIGFSEN----WWKKKSPEE--- 242 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--~f~~~~wv~~~-------~l~~~i~~~l~~~~~----~~~~~~~~~--- 242 (888)
.-++|.|.+|+|||+|+.++++.. ...+ .=+.++++-++ ++.+.+...-.+... ...+.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 347788999999999999999876 2211 11356666666 344444332111100 001111111
Q ss_pred ---HHHHHHHHhc---cCcEEEEEccCC
Q 046470 243 ---KAVDISSILS---RKEFVLLLDDIW 264 (888)
Q Consensus 243 ---~~~~l~~~l~---~k~~LlVlDdv~ 264 (888)
....+.++++ ++.+||++||+.
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 2224555654 689999999984
No 455
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.78 E-value=0.16 Score=50.94 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+..-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997764
No 456
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.77 E-value=0.17 Score=48.75 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...|+|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998763
No 457
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.69 E-value=0.18 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 458
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.69 E-value=0.15 Score=48.36 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998764
No 459
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.68 E-value=0.5 Score=59.86 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhhh---cCCCHHHHHHHHHHHh-cc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENWW---KKKSPEEKAVDISSIL-SR 253 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~l-~~ 253 (888)
+++.|.|.+|+||||||.++.... ...-..++|++.. ......++.++...+.. ...+.++....+.... +.
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~---~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~ 460 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 460 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH---HHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhc
Q ss_pred CcEEEEEccC
Q 046470 254 KEFVLLLDDI 263 (888)
Q Consensus 254 k~~LlVlDdv 263 (888)
+.-+||+|-+
T Consensus 461 ~~~lVVIDSL 470 (1706)
T 3cmw_A 461 AVDVIVVDSV 470 (1706)
T ss_dssp CCSEEEESCS
T ss_pred CCCEEEECCH
No 460
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.64 E-value=0.54 Score=60.42 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcCCChhh---hcCCCHHHHHHHHHHHh-
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIGFSENW---WKKKSPEEKAVDISSIL- 251 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l- 251 (888)
.-.++.|.|.+|+||||||.++..... ..-..++|++.. ......++.++...+. ....+.+++...++...
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~ 458 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 458 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999988762 223467888877 2222235666654321 12345666666666554
Q ss_pred ccCcEEEEEccCCC
Q 046470 252 SRKEFVLLLDDIWK 265 (888)
Q Consensus 252 ~~k~~LlVlDdv~~ 265 (888)
+.+.-+||+|-+..
T Consensus 459 ~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 459 SGAVDVIVVDSVAA 472 (2050)
T ss_dssp HTCCSEEEESCGGG
T ss_pred hcCCcEEEECCHHH
Confidence 34567999999853
No 461
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.61 E-value=0.17 Score=50.73 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||.+.+..-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999998765
No 462
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.59 E-value=0.19 Score=50.73 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=57.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEecc---hHHH---HH--HHcCCChhhhcCCCHHHHHHHH
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVST---LQDD---IG--KRIGFSENWWKKKSPEEKAVDI 247 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---l~~~---i~--~~l~~~~~~~~~~~~~~~~~~l 247 (888)
..-.+++|+|+.|+||||+++.+.... . ..+...+++.-.. +.+. +. ..++. +...+...+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~-~--~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl--------~~~~l~~~l 91 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI-N--QTKSYHIITIEDPIEYVFKHKKSIVNQREVGE--------DTKSFADAL 91 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH-H--HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTT--------TBSCHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC-C--CCCCCEEEEcCCcceeecCCcceeeeHHHhCC--------CHHHHHHHH
Confidence 345799999999999999999988765 1 1112233222110 0000 00 00111 112234567
Q ss_pred HHHhccCcEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecchhh
Q 046470 248 SSILSRKEFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSVDV 294 (888)
Q Consensus 248 ~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 294 (888)
...|..++=+|++|+..+.+....+.... ..|.-|++||-..++
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 77777778899999997554333221111 235567888876543
No 463
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.57 E-value=0.2 Score=54.65 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999997764
No 464
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.50 E-value=0.17 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.+..-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998764
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.46 E-value=0.17 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997754
No 466
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.44 E-value=0.29 Score=49.76 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
++|+|.|-||+||||+|..+..... ..-..+.-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la---~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH---AMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH---HCCCcEEEEcCC
Confidence 5788899999999999999988872 222245556554
No 467
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.38 E-value=0.22 Score=54.65 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+++|+|..|+||||+++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35799999999999999999998876
No 468
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.33 E-value=0.18 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998764
No 469
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.31 E-value=0.18 Score=51.50 Aligned_cols=25 Identities=44% Similarity=0.539 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999997764
No 470
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.31 E-value=0.66 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 471
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.28 E-value=0.089 Score=62.67 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=36.4
Q ss_pred CcccchHHHHHHHHHHhhcC-----------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQ-----------DKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..++|.+..++.+.+.+.-. -.....+.++|++|+||||||+.++...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35678888888877766421 0133568899999999999999999876
No 472
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.27 E-value=0.18 Score=51.18 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-.+++|+|+.|.|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999987654
No 473
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.18 E-value=0.22 Score=51.34 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345789999999999999999987654
No 474
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.07 E-value=0.25 Score=48.85 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999987
No 475
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.03 E-value=0.21 Score=46.02 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999997654
No 476
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.00 E-value=0.46 Score=50.19 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+|+|+|.+|+||||++..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999987654
No 477
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.00 E-value=0.13 Score=58.93 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=33.6
Q ss_pred CcccchHHHHHHHHHHhhcCCC---------CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 155 HTVVGQELLLYRVWKCITDQDK---------NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.++|.+..++.+.-.|..+.. .-.-|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4578888776666555544210 00158899999999999999998765
No 478
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.95 E-value=0.26 Score=46.51 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
....-|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998765
No 479
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.82 E-value=0.26 Score=46.73 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 480
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.77 E-value=0.23 Score=45.97 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.--|.|+|.+|+|||||+..+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4468899999999999999998754
No 481
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.76 E-value=1.1 Score=48.90 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=49.9
Q ss_pred HHHHhhcCCCCceEEEEEcCCCCcHHHHHH-HHHhccccccCCCCE-EEEEEec-------chHHHHHHHcCCChh----
Q 046470 167 VWKCITDQDKNRGIIGLYGIGGVGKTTLLT-QVNNNFCHEQHHFDV-VIWAAVS-------TLQDDIGKRIGFSEN---- 233 (888)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~-~v~~~~~~~~~~f~~-~~wv~~~-------~l~~~i~~~l~~~~~---- 233 (888)
+++.|..- .+-.-++|+|..|+|||+||. .+.+.. .-+. ++++-++ ++.+.+...-.+...
T Consensus 152 aID~l~Pi-grGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 152 AIDSMIPI-GRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHSSCC-BTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eccccccc-ccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 34555431 123458899999999999964 666653 2443 4666666 334444332111110
Q ss_pred hhcCCCH-HHH-----HHHHHHHh--ccCcEEEEEccCCC
Q 046470 234 WWKKKSP-EEK-----AVDISSIL--SRKEFVLLLDDIWK 265 (888)
Q Consensus 234 ~~~~~~~-~~~-----~~~l~~~l--~~k~~LlVlDdv~~ 265 (888)
...+... ... ...+.+++ +++.+||++||+..
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 0011111 111 12344555 47899999999854
No 482
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.74 E-value=0.22 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 046470 180 IIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 483
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.74 E-value=0.46 Score=46.30 Aligned_cols=105 Identities=12% Similarity=0.021 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec---chHHHHHHHcCCChhhhcCCCHHHHHHHHHHHhccC
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS---TLQDDIGKRIGFSENWWKKKSPEEKAVDISSILSRK 254 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~---~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k 254 (888)
-.+..++|.-|.||||-+.....+. . .....+.++-..- .- ..+...++.........+..++.. .. ++
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~-~-~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~----~~-~~ 90 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRF-Q-IAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQ----EA-LG 90 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-H-TTTCCEEEEEETTCCCC------------CEEEEESSGGGGHH----HH-TT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-H-HCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHH----Hh-cc
Confidence 4688999999999998877766665 1 2333333333221 22 455555554322111122222222 22 23
Q ss_pred cEEEEEccCCCccchhhhCCCCCCCCCCcEEEEEecch
Q 046470 255 EFVLLLDDIWKPINLKDMGVPLQNLNAGSKIVLTTRSV 292 (888)
Q Consensus 255 ~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (888)
--+|++|++.-.....++...+.+ .|-.||+|.++.
T Consensus 91 ~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~ 126 (234)
T 2orv_A 91 VAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDG 126 (234)
T ss_dssp CSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSB
T ss_pred CCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEeccc
Confidence 339999998644333333322322 567899999983
No 484
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.72 E-value=0.26 Score=48.97 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 485
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.69 E-value=0.31 Score=50.17 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS 218 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 218 (888)
.++|+|.|-||+||||+|..++.... .. . ..+.-|+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La-~~-G-~rVlliD~D 39 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA-EM-G-KKVMIVGCD 39 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH-HT-T-CCEEEEEEC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH-HC-C-CeEEEEecC
Confidence 46888899999999999999988872 22 1 235555554
No 486
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.66 E-value=0.42 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....+++|+|++|+|||||.+.+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456899999999999999999998654
No 487
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.61 E-value=1 Score=49.80 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhccccccCCCCEEEEEEec-chHHHHHHHcC
Q 046470 159 GQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNFCHEQHHFDVVIWAAVS-TLQDDIGKRIG 229 (888)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~l~~~i~~~l~ 229 (888)
+....++.+...+... . +.+.|.|.+|+||||++..+..... .. ....++.+.-+ ...+.+.+.++
T Consensus 29 ~Q~~av~~~~~~i~~~--~-~~~li~G~aGTGKT~ll~~~~~~l~-~~-~~~~il~~a~T~~Aa~~l~~~~~ 95 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK--K-HHVTINGPAGTGATTLTKFIIEALI-ST-GETGIILAAPTHAAKKILSKLSG 95 (459)
T ss_dssp HHHHHHHHHHHHHHSS--S-CEEEEECCTTSCHHHHHHHHHHHHH-HT-TCCCEEEEESSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcC--C-CEEEEEeCCCCCHHHHHHHHHHHHH-hc-CCceEEEecCcHHHHHHHHhhhc
Confidence 4455566666666552 2 3899999999999999999988872 22 22345555444 33444444443
No 488
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.59 E-value=0.22 Score=49.35 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
..-.+|+|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998654
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.58 E-value=0.26 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
...|.|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999998876
No 490
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.57 E-value=0.23 Score=52.92 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998776
No 491
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.50 E-value=0.31 Score=45.63 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 176 KNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.....|+|+|.+|+|||||+..+....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345679999999999999999987653
No 492
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.45 E-value=0.24 Score=47.10 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
--|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998654
No 493
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.44 E-value=0.73 Score=50.38 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=45.4
Q ss_pred eEEEEEcCCCCcHHHHHH-HHHhccccccCCCCE-EEEEEec-------chHHHHHHHcCCChh----hhcCCC-HHHH-
Q 046470 179 GIIGLYGIGGVGKTTLLT-QVNNNFCHEQHHFDV-VIWAAVS-------TLQDDIGKRIGFSEN----WWKKKS-PEEK- 243 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~-~v~~~~~~~~~~f~~-~~wv~~~-------~l~~~i~~~l~~~~~----~~~~~~-~~~~- 243 (888)
.-++|+|..|+|||+||. .+.+.. .-+. ++++-++ ++.+.+...-.+... ...+.. ....
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 458999999999999964 666653 2453 4666666 333333321111000 001111 1111
Q ss_pred ----HHHHHHHh--ccCcEEEEEccCCC
Q 046470 244 ----AVDISSIL--SRKEFVLLLDDIWK 265 (888)
Q Consensus 244 ----~~~l~~~l--~~k~~LlVlDdv~~ 265 (888)
...+.+++ +++.+||++||+..
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 12344555 57899999999854
No 494
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.43 E-value=0.35 Score=46.04 Aligned_cols=26 Identities=31% Similarity=0.311 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987764
No 495
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.41 E-value=0.24 Score=46.24 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.--|+|+|.+|+|||||+..+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3568999999999999999987654
No 496
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.39 E-value=0.23 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.++.|+|++|+|||||+..+....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999988754
No 497
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.36 E-value=0.23 Score=50.16 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 046470 178 RGIIGLYGIGGVGKTTLLTQVNNN 201 (888)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (888)
-.+++|+|+.|.|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998654
No 498
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.27 E-value=0.33 Score=53.90 Aligned_cols=45 Identities=13% Similarity=-0.013 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHHhhcCCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 158 VGQELLLYRVWKCITDQDKNRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
+.|.+..+.+.+..........+|.+.|+.|+||||+|+++....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 444444444444442212345789999999999999999999987
No 499
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.23 E-value=0.24 Score=51.20 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 177 NRGIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
.-.+++|+|.+|+|||||++.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998776
No 500
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.11 E-value=0.26 Score=46.18 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 046470 179 GIIGLYGIGGVGKTTLLTQVNNNF 202 (888)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (888)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
Done!