BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046471
         (369 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
           Diphosphate Synthase In Complex With
           [2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
           Mg2+
          Length = 361

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 320 IAEGF--ITDNNEATAEKYLEQLINGGFVILIEEAKGLV 356
           +AEGF  +T ++EAT E+ L     GG++I   +A  LV
Sbjct: 57  VAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLV 95


>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
           Diphosphate Synthase In Complex With
           [2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
           And Mg2+
          Length = 362

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 320 IAEGF--ITDNNEATAEKYLEQLINGGFVILIEEAKGLV 356
           +AEGF  +T ++EAT E+ L     GG++I   +A  LV
Sbjct: 58  VAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLV 96


>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
 pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
           Diphosphate Synthase With Risedronate, Dmapp And Mg+2
 pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
           Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
           Mg2+
 pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
           In Complex With Minodronate And Isopentenyl Disphosphate
 pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
           In Complex With Isopentenyl Pyrophosphate, Mg2+ And
           1-(2-
           Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
 pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
           In Complex With Isopentenyl Pyrophosphate And
           3-Fluoro-1-(2-
           Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
 pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
           In Complex With
           1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
           Isopentenyl Pyrophosphate
 pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
           In Complex With
           3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
 pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
           Diphosphate Synthase In Complex With
           [2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
           Mg2+
 pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
           Diphosphate Synthase In Complex With
           [2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
           Mg2+
 pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
           Diphosphate Synthase In Complex With
           [2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
           Mg2+
 pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
           Diphosphate Synthase In Complex With
           [2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
           Mg2+
 pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
           Diphosphate Synthase In Complex With
           [2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
           Mg2+
          Length = 362

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 320 IAEGF--ITDNNEATAEKYLEQLINGGFVILIEEAKGLV 356
           +AEGF  +T ++EAT E+ L     GG++I   +A  LV
Sbjct: 58  VAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLV 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,286,375
Number of Sequences: 62578
Number of extensions: 486692
Number of successful extensions: 1012
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 8
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)