Query 046471
Match_columns 369
No_of_seqs 260 out of 2281
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:30:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.6E-49 5.6E-54 406.4 21.7 354 6-368 27-491 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 3.8E-30 8.2E-35 237.7 9.8 198 129-328 1-285 (287)
3 PLN03210 Resistant to P. syrin 99.9 9.6E-22 2.1E-26 211.9 16.3 223 122-368 182-498 (1153)
4 PRK00411 cdc6 cell division co 96.6 0.024 5.1E-07 54.7 11.6 106 121-231 27-149 (394)
5 TIGR02928 orc1/cdc6 family rep 95.7 0.081 1.8E-06 50.4 10.0 104 123-232 14-141 (365)
6 cd01128 rho_factor Transcripti 94.9 0.041 8.9E-07 49.5 5.0 84 145-231 17-114 (249)
7 PRK05564 DNA polymerase III su 94.9 0.29 6.3E-06 45.7 10.7 115 124-259 4-134 (313)
8 PRK09376 rho transcription ter 94.3 0.042 9E-07 52.3 3.4 93 135-230 158-266 (416)
9 PF05729 NACHT: NACHT domain 93.5 0.34 7.3E-06 40.0 7.4 43 218-260 79-132 (166)
10 COG2909 MalT ATP-dependent tra 93.4 3.2 6.9E-05 43.3 15.1 214 133-364 24-330 (894)
11 TIGR03015 pepcterm_ATPase puta 92.6 2.8 6E-05 37.9 12.7 83 152-239 59-144 (269)
12 cd00009 AAA The AAA+ (ATPases 92.6 1.4 3E-05 35.0 9.7 113 127-258 1-130 (151)
13 TIGR00767 rho transcription te 91.3 0.43 9.4E-06 45.8 5.7 84 145-231 169-266 (415)
14 PRK04841 transcriptional regul 88.7 4.4 9.5E-05 43.6 11.6 70 284-366 257-326 (903)
15 KOG2543 Origin recognition com 88.3 2.3 4.9E-05 40.3 7.8 105 123-234 5-129 (438)
16 PF01637 Arch_ATPase: Archaeal 87.1 2.3 4.9E-05 37.1 7.0 33 126-158 1-42 (234)
17 PTZ00202 tuzin; Provisional 85.4 13 0.00029 36.4 11.3 96 117-227 255-368 (550)
18 PF13173 AAA_14: AAA domain 85.3 1.1 2.5E-05 35.5 3.8 51 211-261 52-102 (128)
19 PF13401 AAA_22: AAA domain; P 84.9 1.4 3E-05 34.8 4.1 83 168-257 39-125 (131)
20 COG1474 CDC6 Cdc6-related prot 84.6 6.2 0.00013 37.7 8.9 100 125-231 18-134 (366)
21 PF04665 Pox_A32: Poxvirus A32 82.5 7.7 0.00017 34.6 8.1 22 285-306 136-157 (241)
22 TIGR02903 spore_lon_C ATP-depe 78.1 7.3 0.00016 40.0 7.4 133 124-258 154-334 (615)
23 PF13191 AAA_16: AAA ATPase do 74.7 4.1 8.9E-05 34.2 3.9 34 125-158 1-46 (185)
24 PRK07003 DNA polymerase III su 71.1 28 0.00061 36.6 9.3 40 219-258 118-159 (830)
25 PF13177 DNA_pol3_delta2: DNA 70.8 55 0.0012 27.1 9.8 41 219-259 101-143 (162)
26 PRK08116 hypothetical protein; 69.4 7.1 0.00015 35.5 4.4 85 152-256 130-219 (268)
27 KOG2227 Pre-initiation complex 68.5 31 0.00067 33.9 8.4 105 121-231 147-267 (529)
28 PRK12402 replication factor C 66.7 37 0.00081 31.5 8.9 35 124-158 15-58 (337)
29 PRK13342 recombination factor 66.5 21 0.00045 34.7 7.3 99 124-253 12-124 (413)
30 PF05673 DUF815: Protein of un 66.2 81 0.0018 28.3 10.1 190 119-343 22-248 (249)
31 CHL00095 clpC Clp protease ATP 65.8 26 0.00057 37.4 8.4 28 124-151 179-207 (821)
32 PTZ00112 origin recognition co 63.9 57 0.0012 35.2 9.8 105 123-231 754-880 (1164)
33 COG2607 Predicted ATPase (AAA+ 62.0 52 0.0011 29.5 8.0 112 116-257 52-182 (287)
34 PF02463 SMC_N: RecF/RecN/SMC 60.0 7.3 0.00016 34.0 2.5 46 219-264 157-205 (220)
35 PF14162 YozD: YozD-like prote 59.1 11 0.00023 24.5 2.4 19 330-348 11-29 (57)
36 PHA02544 44 clamp loader, smal 59.0 82 0.0018 29.1 9.6 36 123-158 20-65 (316)
37 PRK06893 DNA replication initi 57.9 25 0.00055 31.0 5.6 37 222-258 93-134 (229)
38 TIGR02397 dnaX_nterm DNA polym 56.3 1.4E+02 0.0031 27.9 10.9 40 219-258 116-157 (355)
39 PRK04195 replication factor C 56.2 59 0.0013 32.3 8.5 37 123-159 13-62 (482)
40 PRK11331 5-methylcytosine-spec 55.1 44 0.00095 32.9 7.0 111 123-242 174-297 (459)
41 PRK00440 rfc replication facto 54.8 1.5E+02 0.0033 27.1 10.7 28 124-151 17-45 (319)
42 TIGR00635 ruvB Holliday juncti 54.2 60 0.0013 29.8 7.8 122 124-261 4-143 (305)
43 TIGR01242 26Sp45 26S proteasom 53.9 53 0.0011 31.2 7.5 21 121-141 119-139 (364)
44 PRK10865 protein disaggregatio 50.1 67 0.0015 34.6 8.2 36 124-159 178-226 (857)
45 TIGR03346 chaperone_ClpB ATP-d 49.9 60 0.0013 34.9 7.8 28 124-151 173-201 (852)
46 PRK12323 DNA polymerase III su 49.7 1.3E+02 0.0028 31.3 9.6 44 218-261 122-168 (700)
47 PRK08691 DNA polymerase III su 49.1 1.4E+02 0.003 31.2 9.8 22 123-144 15-36 (709)
48 PF05621 TniB: Bacterial TniB 48.6 1.6E+02 0.0035 27.3 9.3 102 124-231 34-156 (302)
49 TIGR03345 VI_ClpV1 type VI sec 44.1 94 0.002 33.5 8.1 39 219-257 667-718 (852)
50 PRK14969 DNA polymerase III su 43.8 2.5E+02 0.0055 28.3 10.8 40 218-257 117-158 (527)
51 cd04449 DEP_DEPDC5-like DEP (D 43.1 93 0.002 22.6 5.7 42 310-352 30-71 (83)
52 PRK13341 recombination factor 42.8 91 0.002 32.8 7.6 33 219-254 108-142 (725)
53 PRK14963 DNA polymerase III su 42.4 31 0.00066 34.6 4.0 43 218-260 114-159 (504)
54 PRK07940 DNA polymerase III su 41.9 2.3E+02 0.005 27.4 9.8 39 219-257 116-156 (394)
55 cd01133 F1-ATPase_beta F1 ATP 40.2 66 0.0014 29.4 5.4 83 145-231 70-174 (274)
56 PRK07471 DNA polymerase III su 39.9 92 0.002 29.8 6.7 40 219-258 140-181 (365)
57 COG1373 Predicted ATPase (AAA+ 39.5 51 0.0011 31.9 4.9 43 220-263 94-136 (398)
58 PRK14957 DNA polymerase III su 39.4 2.5E+02 0.0054 28.5 9.8 41 218-258 117-160 (546)
59 PF05659 RPW8: Arabidopsis bro 38.3 48 0.001 27.2 3.9 84 3-94 30-113 (147)
60 TIGR03346 chaperone_ClpB ATP-d 37.7 2.4E+02 0.0051 30.5 10.0 19 124-142 565-583 (852)
61 PRK14958 DNA polymerase III su 37.2 2.9E+02 0.0063 27.8 9.9 39 218-256 117-157 (509)
62 cd00561 CobA_CobO_BtuR ATP:cor 37.1 30 0.00065 28.8 2.5 49 211-259 85-139 (159)
63 cd04443 DEP_GPR155 DEP (Dishev 36.0 1E+02 0.0022 22.5 4.9 41 310-352 31-71 (83)
64 PF00610 DEP: Domain found in 35.8 1.2E+02 0.0027 21.0 5.3 41 310-352 18-60 (74)
65 TIGR02639 ClpA ATP-dependent C 35.3 1.3E+02 0.0027 31.9 7.4 28 124-151 182-210 (731)
66 PRK08181 transposase; Validate 34.9 1.2E+02 0.0025 27.7 6.2 37 222-258 169-209 (269)
67 PRK14951 DNA polymerase III su 34.2 3.2E+02 0.0069 28.3 9.8 38 219-256 123-162 (618)
68 TIGR03345 VI_ClpV1 type VI sec 33.4 1.8E+02 0.0039 31.3 8.2 28 124-151 187-215 (852)
69 PRK14950 DNA polymerase III su 32.7 2.6E+02 0.0057 28.6 9.0 38 219-256 119-158 (585)
70 PRK14949 DNA polymerase III su 32.6 2.4E+02 0.0053 30.5 8.8 44 218-261 117-163 (944)
71 PRK00080 ruvB Holliday junctio 32.2 2.8E+02 0.0061 25.8 8.6 60 283-350 250-311 (328)
72 PF12061 DUF3542: Protein of u 31.8 57 0.0012 30.3 3.5 54 5-59 319-372 (402)
73 PRK14961 DNA polymerase III su 31.7 4.5E+02 0.0099 24.9 12.8 38 219-256 118-157 (363)
74 PRK08451 DNA polymerase III su 31.4 5.1E+02 0.011 26.3 10.5 39 219-257 116-156 (535)
75 PRK14960 DNA polymerase III su 31.1 4E+02 0.0087 27.9 9.8 40 218-257 116-157 (702)
76 PRK06645 DNA polymerase III su 30.4 4.7E+02 0.01 26.3 10.1 46 217-262 125-173 (507)
77 TIGR02639 ClpA ATP-dependent C 30.3 4.5E+02 0.0097 27.8 10.5 19 124-142 454-472 (731)
78 PRK11034 clpA ATP-dependent Cl 29.6 1.9E+02 0.004 30.8 7.4 28 124-151 186-214 (758)
79 PRK14971 DNA polymerase III su 29.5 5.6E+02 0.012 26.5 10.7 43 219-261 120-165 (614)
80 PRK14970 DNA polymerase III su 29.3 4.9E+02 0.011 24.5 10.0 22 123-144 16-37 (367)
81 KOG2028 ATPase related to the 27.7 2.7E+02 0.0059 26.8 7.3 81 152-259 178-262 (554)
82 PRK12608 transcription termina 27.2 1.7E+02 0.0036 28.2 6.0 93 134-230 121-230 (380)
83 PRK03992 proteasome-activating 26.9 3.2E+02 0.007 26.3 8.1 21 121-141 128-148 (389)
84 cd04438 DEP_dishevelled DEP (D 25.5 1.6E+02 0.0035 21.5 4.5 40 311-353 31-72 (84)
85 PRK12377 putative replication 25.4 2.5E+02 0.0055 25.1 6.6 38 219-256 162-204 (248)
86 smart00049 DEP Domain found in 25.2 1.9E+02 0.0042 20.1 4.9 40 310-351 21-60 (77)
87 PRK09162 hypoxanthine-guanine 25.1 91 0.002 26.4 3.6 29 217-246 95-124 (181)
88 cd04448 DEP_PIKfyve DEP (Dishe 25.0 2.1E+02 0.0045 20.7 4.9 41 310-352 29-69 (81)
89 PRK07764 DNA polymerase III su 24.9 5.9E+02 0.013 27.4 10.1 44 218-261 118-164 (824)
90 PF12802 MarR_2: MarR family; 24.8 2.1E+02 0.0045 18.7 5.8 55 289-351 2-56 (62)
91 PF03297 Ribosomal_S25: S25 ri 24.4 1.6E+02 0.0035 22.6 4.4 30 330-359 73-102 (105)
92 cd04441 DEP_2_DEP6 DEP (Dishev 23.9 2.1E+02 0.0045 21.0 4.8 41 310-352 33-73 (85)
93 cd04439 DEP_1_P-Rex DEP (Dishe 23.9 2.2E+02 0.0047 20.7 4.8 41 310-352 29-69 (81)
94 PRK10536 hypothetical protein; 23.5 85 0.0018 28.4 3.2 40 216-256 169-211 (262)
95 PRK08939 primosomal protein Dn 22.8 2.4E+02 0.0051 26.2 6.1 106 128-256 135-259 (306)
96 CHL00095 clpC Clp protease ATP 22.3 8.9E+02 0.019 26.0 11.1 45 213-257 603-661 (821)
97 PRK08727 hypothetical protein; 22.2 1.5E+02 0.0033 26.1 4.6 36 222-257 95-135 (233)
98 PF13730 HTH_36: Helix-turn-he 21.6 2.3E+02 0.005 18.1 5.0 51 289-346 2-55 (55)
99 cd04440 DEP_2_P-Rex DEP (Dishe 21.6 2.5E+02 0.0055 21.0 4.9 41 310-352 38-78 (93)
100 PLN03025 replication factor C 21.5 6.5E+02 0.014 23.2 12.7 38 219-256 98-137 (319)
101 COG0542 clpA ATP-binding subun 21.4 2.1E+02 0.0045 30.4 5.9 115 124-255 491-641 (786)
102 PRK14965 DNA polymerase III su 21.0 7.6E+02 0.016 25.3 9.8 22 123-144 15-36 (576)
103 PRK05642 DNA replication initi 20.8 2E+02 0.0044 25.4 5.1 36 223-258 100-140 (234)
104 PRK06835 DNA replication prote 20.5 7.2E+02 0.016 23.3 11.6 35 222-256 248-287 (329)
105 TIGR00678 holB DNA polymerase 20.1 1.5E+02 0.0033 24.8 4.0 38 219-256 95-134 (188)
106 cd04444 DEP_PLEK2 DEP (Disheve 20.0 1.4E+02 0.0031 23.0 3.4 41 311-353 33-73 (109)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-49 Score=406.39 Aligned_cols=354 Identities=24% Similarity=0.339 Sum_probs=265.2
Q ss_pred HHHHHHHHHHHHhhHhhhhhhccCcccCchHHHHHHHHHHHhccccchhhhhhhhcccCCCC-CCcc------cccc---
Q 046471 6 RLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGEDEVDN-PDLG------RKSI--- 75 (369)
Q Consensus 6 ~~~l~~L~~~L~~i~~~L~~a~~~~~~~~~~~~~~w~~~Lrdlayd~eD~ld~~~~~~~~~~-~~~~------~~~~--- 75 (369)
+..+..|+++|..++.++.+++.++-+ ......|...+++++|++||.++.+........ .+.. .+..
T Consensus 27 ~~~i~~Lk~~L~~l~~~l~d~~a~~~~--~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~ 104 (889)
T KOG4658|consen 27 DNYILELKENLKALQSALEDLDAKRDD--LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLC 104 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhh
Confidence 446889999999999999999998633 356688899999999999999887665432210 0000 0001
Q ss_pred -cCccch-------hhHHHHHHHHHHhhhhccCcccCCccccccccCCCCCcCCCCCccccchHHHHHHHHHHhcCCC-C
Q 046471 76 -ALPMNL-------KRINDIKQRMQQLQYIDSGIIDDFKNIEDEVGYFPASLSSKNSGMVGLEDRMEKLLDILKEGPP-Q 146 (369)
Q Consensus 76 -~~~~~~-------~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~-~ 146 (369)
.+..+. +++-++...++.+... +..............+++.+.....+ ||.+..++++.+.|.+++. -
T Consensus 105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~--~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~i 181 (889)
T KOG4658|consen 105 GFCSKNVSDSYKYGKRVSKVLREVESLGSK--GVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGI 181 (889)
T ss_pred hhHhHhhhhhHhHHHHHHHHHHHHHHhccc--cceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCE
Confidence 111122 3344444444443211 10000010011112234445455555 9999999999999998775 3
Q ss_pred cEEee--------hHHHHhcCcC-ccccccceEEEecCCCCCcChHHHHHHHHHHhCcCCccccccccHHHHHHHHHHhc
Q 046471 147 LSVVA--------FAAEAYSNSD-VKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYL 217 (369)
Q Consensus 147 ~~vi~--------LA~~vy~~~~-v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L 217 (369)
+++.| ||+++||+.. ++.+|+..+||+||+.|+... ++++|+..++...... ...+.+.++..|.+.|
T Consensus 182 v~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~--iq~~Il~~l~~~~~~~-~~~~~~~~~~~i~~~L 258 (889)
T KOG4658|consen 182 VGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRK--IQQTILERLGLLDEEW-EDKEEDELASKLLNLL 258 (889)
T ss_pred EEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHh--HHHHHHHHhccCCccc-chhhHHHHHHHHHHHh
Confidence 44444 9999999988 999999999999999999999 9999999998864432 1124578999999999
Q ss_pred CCceEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhhhh-cc---------c---------------------
Q 046471 218 MIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVIS-FH---------I--------------------- 266 (369)
Q Consensus 218 ~~kr~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va~~-~~---------L--------------------- 266 (369)
++|||||||||||+..+|+.++.++|...+||+|++|||++.||.. |. |
T Consensus 259 ~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~ 338 (889)
T KOG4658|consen 259 EGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSH 338 (889)
T ss_pred ccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccc
Confidence 9999999999999999999999999999899999999999999998 41 1
Q ss_pred ----------------------------ccc----------ccccccccCCc--------chhHhhhcCCchhhHHHHhh
Q 046471 267 ----------------------------SLK----------ENIEEALDEPL--------GLQVVAYCMLPFYLKLCCLY 300 (369)
Q Consensus 267 ----------------------------a~k----------~~~~~~l~~~~--------~il~~sy~~L~~~lk~cfly 300 (369)
|.| +.+.+.+..+. ++|++||++||+++|.||+|
T Consensus 339 ~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLy 418 (889)
T KOG4658|consen 339 PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLY 418 (889)
T ss_pred ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHh
Confidence 223 22222211111 45999999999999999999
Q ss_pred hhcCCCCceechHHHHHHHHHcCCCCCCc-----HHHHHHHHHHHHhCCCceeeeccCCeEEEEe-cCcccccC
Q 046471 301 LSVFPVHFEISTKQLYQSWIAEGFITDNN-----EATAEKYLEQLINGGFVILIEEAKGLVFIYK-HLTMHEQE 368 (369)
Q Consensus 301 ~s~fP~~~~i~~~~Li~~W~aeg~i~~~~-----e~~~~~~~~~L~~r~ll~~~~~~~g~~~~~~-h~~~hdl~ 368 (369)
||+||+||.|+++.||.+|+||||+.+.. +++|+.|+.+|+++||++..... |+..+|+ ||+|+|.|
T Consensus 419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~-~~~~~~kmHDvvRe~a 491 (889)
T KOG4658|consen 419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE-GRKETVKMHDVVREMA 491 (889)
T ss_pred hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc-cceeEEEeeHHHHHHH
Confidence 99999999999999999999999998843 89999999999999999987654 5556665 99999876
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=3.8e-30 Score=237.66 Aligned_cols=198 Identities=31% Similarity=0.493 Sum_probs=150.3
Q ss_pred chHHHHHHHHHHhcCCCCcEEee-----------hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHHHhCcCC
Q 046471 129 LEDRMEKLLDILKEGPPQLSVVA-----------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSS 197 (369)
Q Consensus 129 r~~~~~~l~~~L~~~~~~~~vi~-----------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l~~~~ 197 (369)
||.++++|.+.|.....+..+|+ ||+.+|++..++.+|+.++||.+++.++... +++.|+.+++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~--~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQ--LLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHH--HHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccc--ccccccccccccc
Confidence 68999999999998555555555 9999999766999999999999999999988 9999999999885
Q ss_pred ccccccccHHHHHHHHHHhcCCceEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhhhhcc----------c-
Q 046471 198 RLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVISFH----------I- 266 (369)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va~~~~----------L- 266 (369)
.......+...+...+++.|+++++||||||||+...|+.+...++....||+||||||+..|+..+. |
T Consensus 79 ~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 79 SSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred cccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 43212347788999999999999999999999999999999988887778999999999999886541 1
Q ss_pred ---------------------------------------ccc-------------------ccccccccC----Ccc---
Q 046471 267 ---------------------------------------SLK-------------------ENIEEALDE----PLG--- 281 (369)
Q Consensus 267 ---------------------------------------a~k-------------------~~~~~~l~~----~~~--- 281 (369)
|.+ +.+.+.... ...
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 110 011111111 112
Q ss_pred hhHhhhcCCchhhHHHHhhhhcCCCCceechHHHHHHHHHcCCCCCC
Q 046471 282 LQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDN 328 (369)
Q Consensus 282 il~~sy~~L~~~lk~cfly~s~fP~~~~i~~~~Li~~W~aeg~i~~~ 328 (369)
++.+||+.||+++|.||+|||+||+++.|+++.|+++|+|||||+++
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 39999999999999999999999999999999999999999999875
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9.6e-22 Score=211.90 Aligned_cols=223 Identities=14% Similarity=0.186 Sum_probs=158.4
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCcEEee-----------hHHHHhcCcCccccccceEEEec---CCC----------
Q 046471 122 KNSGMVGLEDRMEKLLDILKEGPPQLSVVA-----------FAAEAYSNSDVKHYFNCHAWVPE---PYN---------- 177 (369)
Q Consensus 122 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~-----------LA~~vy~~~~v~~~F~~~~wv~v---s~~---------- 177 (369)
+..++||++..++++..+|..+.+++.+|+ ||+.+|+ ++..+|+..+|+.- +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccc
Confidence 456799999999999999876555566666 9999999 88889999887632 211
Q ss_pred -CC-cChHHHHHHHHHHhCcCCccccccccHHHHHHHHHHhcCCceEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEe
Q 046471 178 -YD-ADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITL 255 (369)
Q Consensus 178 -~~-~~~~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTT 255 (369)
++ ... +++.++.++....... ... ...+++.|++||+||||||||+..+|+.+.......++||+|||||
T Consensus 260 ~~~~~~~--l~~~~l~~il~~~~~~--~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 260 DYNMKLH--LQRAFLSEILDKKDIK--IYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred ccchhHH--HHHHHHHHHhCCCCcc--cCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEe
Confidence 11 112 4555666554432111 011 1467888999999999999999999999987776667899999999
Q ss_pred cchhhhhhc---c------c---------------------------------------ccc---------ccccc----
Q 046471 256 IEIDIVISF---H------I---------------------------------------SLK---------ENIEE---- 274 (369)
Q Consensus 256 r~~~va~~~---~------L---------------------------------------a~k---------~~~~~---- 274 (369)
|+..++..+ + | |.| ....|
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 999998654 1 1 111 00011
Q ss_pred -cccCC--c---chhHhhhcCCch-hhHHHHhhhhcCCCCceechHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCce
Q 046471 275 -ALDEP--L---GLQVVAYCMLPF-YLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVI 347 (369)
Q Consensus 275 -~l~~~--~---~il~~sy~~L~~-~lk~cfly~s~fP~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~ 347 (369)
.+... . .+|++||++||+ ..|.||++||+||.+..++ .+..|+|.+.... +.-++.|+++||++
T Consensus 412 ~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~------~~~l~~L~~ksLi~ 482 (1153)
T PLN03210 412 PRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV------NIGLKNLVDKSLIH 482 (1153)
T ss_pred HHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc------hhChHHHHhcCCEE
Confidence 12211 1 249999999987 5999999999999997554 4778888876542 22389999999998
Q ss_pred eeeccCCeEEEEecCcccccC
Q 046471 348 LIEEAKGLVFIYKHLTMHEQE 368 (369)
Q Consensus 348 ~~~~~~g~~~~~~h~~~hdl~ 368 (369)
... |+ +.||+++||+|
T Consensus 483 ~~~---~~--~~MHdLl~~~~ 498 (1153)
T PLN03210 483 VRE---DI--VEMHSLLQEMG 498 (1153)
T ss_pred EcC---Ce--EEhhhHHHHHH
Confidence 643 33 45799999876
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.61 E-value=0.024 Score=54.75 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=69.8
Q ss_pred CCCCccccchHHHHHHHHHHhcC---C--CCcEEee--------hHHHHhcCcCccccc--cceEEEecCCCCCcChHHH
Q 046471 121 SKNSGMVGLEDRMEKLLDILKEG---P--PQLSVVA--------FAAEAYSNSDVKHYF--NCHAWVPEPYNYDADDDQI 185 (369)
Q Consensus 121 ~~~~~~vGr~~~~~~l~~~L~~~---~--~~~~vi~--------LA~~vy~~~~v~~~F--~~~~wv~vs~~~~~~~~~i 185 (369)
..+..++||++++++|...|... . ..+-+.| +++.++++ ..... -..+++......+... +
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~--~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYA--I 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHH--H
Confidence 34567999999999999998432 1 2344444 88888873 32222 2245555555556667 9
Q ss_pred HHHHHHHhCcCCccccccccHHHHHHHHHHhcC--CceEEEEEeCCCC
Q 046471 186 LDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLM--IKRYLIVVDDVWR 231 (369)
Q Consensus 186 l~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~ 231 (369)
+..|+.++....... ...+..++...+.+.+. ++..+||||+++.
T Consensus 103 ~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~ 149 (394)
T PRK00411 103 FSEIARQLFGHPPPS-SGLSFDELFDKIAEYLDERDRVLIVALDDINY 149 (394)
T ss_pred HHHHHHHhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH
Confidence 999999997632111 11256667777777775 4568999999976
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.67 E-value=0.081 Score=50.41 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=66.0
Q ss_pred CCccccchHHHHHHHHHHhc---C-C-CCcEEee--------hHHHHhcCcCccccc------cceEEEecCCCCCcChH
Q 046471 123 NSGMVGLEDRMEKLLDILKE---G-P-PQLSVVA--------FAAEAYSNSDVKHYF------NCHAWVPEPYNYDADDD 183 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~---~-~-~~~~vi~--------LA~~vy~~~~v~~~F------~~~~wv~vs~~~~~~~~ 183 (369)
+..++||+++++.|...|.. + . ..+-+.| +++.+++. ..... -..+|+......+...
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~- 90 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQ- 90 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHH-
Confidence 45799999999999999864 2 2 2344445 88888763 21111 1246666666556667
Q ss_pred HHHHHHHHHhCc---CCccccccccHHHHHHHHHHhcC--CceEEEEEeCCCCc
Q 046471 184 QILDMIMKFLMP---SSRLSIIKDKNYEMKKKIQQYLM--IKRYLIVVDDVWRI 232 (369)
Q Consensus 184 ~il~~il~~l~~---~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~~ 232 (369)
++..|+.++.. ..... ..+..++...+.+.+. ++.++||||+++.-
T Consensus 91 -~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 91 -VLVELANQLRGSGEEVPTT--GLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred -HHHHHHHHHhhcCCCCCCC--CCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 99999999842 21110 1144455556666663 56899999999754
No 6
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.94 E-value=0.041 Score=49.52 Aligned_cols=84 Identities=12% Similarity=-0.029 Sum_probs=53.2
Q ss_pred CCcEEee--------hHHHHhcCcCccccccceEEEecCCC--CCcChHHHHHHHHHHhCcCCccccccc---cHHHHHH
Q 046471 145 PQLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYN--YDADDDQILDMIMKFLMPSSRLSIIKD---KNYEMKK 211 (369)
Q Consensus 145 ~~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~--~~~~~~~il~~il~~l~~~~~~~~~~~---~~~~~~~ 211 (369)
+...++| |++.+|++.... +|+..+|++++++ +++.+ +++.+...+-.......+.. -......
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~e--l~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTD--MQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHH--HHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 4566666 999999965544 8999999998777 78888 99998443322221111101 1122233
Q ss_pred HHHHh-cCCceEEEEEeCCCC
Q 046471 212 KIQQY-LMIKRYLIVVDDVWR 231 (369)
Q Consensus 212 ~l~~~-L~~kr~LlVLDdvw~ 231 (369)
....+ -.|++.++++|++-.
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 33332 358999999999853
No 7
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.85 E-value=0.29 Score=45.66 Aligned_cols=115 Identities=12% Similarity=0.247 Sum_probs=69.2
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcE-Eee------------hHHHHhcCcCccccccceEEEec-CCCCCcChHHHHHH
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLS-VVA------------FAAEAYSNSDVKHYFNCHAWVPE-PYNYDADDDQILDM 188 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~-vi~------------LA~~vy~~~~v~~~F~~~~wv~v-s~~~~~~~~~il~~ 188 (369)
.+++|-+..++.+.+.+..+. ++.- +.| +|+.++.......|.|...|... +....... .++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~---ir~ 80 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD---IRN 80 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH---HHH
Confidence 467899999999999987654 2222 222 55665543334567777666553 22222222 333
Q ss_pred HHHHhCcCCccccccccHHHHHHHHHHhcCCceEEEEEe-CCCCchhHHHhhhhcCCCCCCceEEEEecchh
Q 046471 189 IMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVD-DVWRIEVWDVIREIVPDNQNGCGVLITLIEID 259 (369)
Q Consensus 189 il~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD-dvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~ 259 (369)
+.+.+.... ...++|++||=| |..+...|+.+...+.....++.+|++|.+.+
T Consensus 81 ~~~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 81 IIEEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 333332211 113556655555 55666789999999987778899998886553
No 8
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.25 E-value=0.042 Score=52.33 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=55.5
Q ss_pred HHHHHHhc--CCCCcEEee--------hHHHHhcCcCccccccceEEEecCCCC--CcChHHHHHHHHHHhCcCCccccc
Q 046471 135 KLLDILKE--GPPQLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYNY--DADDDQILDMIMKFLMPSSRLSII 202 (369)
Q Consensus 135 ~l~~~L~~--~~~~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~~--~~~~~~il~~il~~l~~~~~~~~~ 202 (369)
++++++.. ..++..++| ||+.||++.... ||++++||++++.+ ++.+ ++++|...+-.......+
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtd--iqrsIlg~vv~st~d~~~ 234 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTD--MQRSVKGEVVASTFDEPA 234 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHH--HHHHhcCcEEEECCCCCH
Confidence 34555543 234556666 999999965444 89999999999887 6777 888776322222111111
Q ss_pred cc---cHHHHHHHHHHh-cCCceEEEEEeCCC
Q 046471 203 KD---KNYEMKKKIQQY-LMIKRYLIVVDDVW 230 (369)
Q Consensus 203 ~~---~~~~~~~~l~~~-L~~kr~LlVLDdvw 230 (369)
.. -.......-..+ -.|+..+|++|++-
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 00 111112222222 36899999999985
No 9
>PF05729 NACHT: NACHT domain
Probab=93.49 E-value=0.34 Score=40.00 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCceEEEEEeCCCCchh---------HHHhh-hhcCC-CCCCceEEEEecchhh
Q 046471 218 MIKRYLIVVDDVWRIEV---------WDVIR-EIVPD-NQNGCGVLITLIEIDI 260 (369)
Q Consensus 218 ~~kr~LlVLDdvw~~~~---------w~~l~-~~l~~-~~~gs~IivTTr~~~v 260 (369)
+.++++||||++.+... +..+. ..++. ..++.+++||||....
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 56899999999865421 22222 22332 3568999999997655
No 10
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.37 E-value=3.2 Score=43.30 Aligned_cols=214 Identities=17% Similarity=0.131 Sum_probs=121.1
Q ss_pred HHHHHHHHhcC-CCCcEEee---------hHHHHhcCcCccccccceEEEecCCC-CCcChHHHHHHHHHHhCcCCcccc
Q 046471 133 MEKLLDILKEG-PPQLSVVA---------FAAEAYSNSDVKHYFNCHAWVPEPYN-YDADDDQILDMIMKFLMPSSRLSI 201 (369)
Q Consensus 133 ~~~l~~~L~~~-~~~~~vi~---------LA~~vy~~~~v~~~F~~~~wv~vs~~-~~~~~~~il~~il~~l~~~~~~~~ 201 (369)
+..|++.|... +-++.+|+ |+-+...- .. .=.-++|.+.+.+ -+... +.+-++..++...+..-
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~--~~-~~~~v~Wlslde~dndp~r--F~~yLi~al~~~~p~~~ 98 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWREL--AA-DGAAVAWLSLDESDNDPAR--FLSYLIAALQQATPTLG 98 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHh--cC-cccceeEeecCCccCCHHH--HHHHHHHHHHHhCcccc
Confidence 35567777665 45677777 44444321 11 1123899999765 45666 88888888874332210
Q ss_pred ----------ccccHHHHHHHHHHhcCC--ceEEEEEeCCCC---chhHHHhhhhcCCCCCCceEEEEecchhhhhhcc-
Q 046471 202 ----------IKDKNYEMKKKIQQYLMI--KRYLIVVDDVWR---IEVWDVIREIVPDNQNGCGVLITLIEIDIVISFH- 265 (369)
Q Consensus 202 ----------~~~~~~~~~~~l~~~L~~--kr~LlVLDdvw~---~~~w~~l~~~l~~~~~gs~IivTTr~~~va~~~~- 265 (369)
...+...+...+..-|.. +...+||||.-- ..--..+..-+.....+-..|||||+..-.....
T Consensus 99 ~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~l 178 (894)
T COG2909 99 DEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARL 178 (894)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccce
Confidence 011444455555554443 678999999542 2222334444444456789999999874332210
Q ss_pred -------------cc----------------------cc----cccccc---------ccC-Cc------------c---
Q 046471 266 -------------IS----------------------LK----ENIEEA---------LDE-PL------------G--- 281 (369)
Q Consensus 266 -------------La----------------------~k----~~~~~~---------l~~-~~------------~--- 281 (369)
|+ .| .+.||- +++ ++ .
T Consensus 179 Rlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~ 258 (894)
T COG2909 179 RLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLS 258 (894)
T ss_pred eehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHH
Confidence 10 00 122221 111 11 0
Q ss_pred --hhHhhhcCCchhhHHHHhhhhcCCCCceechHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeeccCCeEEEE
Q 046471 282 --LQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIY 359 (369)
Q Consensus 282 --il~~sy~~L~~~lk~cfly~s~fP~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~~g~~~~~ 359 (369)
+..--++.||+++|.-++-||+++.= -..|+..-.. ++-|...+++|.+++|+-..-.+.+.. +|
T Consensus 259 dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg--------~~ng~amLe~L~~~gLFl~~Ldd~~~W-fr 325 (894)
T COG2909 259 DYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG--------EENGQAMLEELERRGLFLQRLDDEGQW-FR 325 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc--------CCcHHHHHHHHHhCCCceeeecCCCce-ee
Confidence 15556789999999999999998762 1233333222 678888999999999986433332332 33
Q ss_pred ecCcc
Q 046471 360 KHLTM 364 (369)
Q Consensus 360 ~h~~~ 364 (369)
.|.+.
T Consensus 326 yH~LF 330 (894)
T COG2909 326 YHHLF 330 (894)
T ss_pred hhHHH
Confidence 35543
No 11
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.64 E-value=2.8 Score=37.87 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=47.0
Q ss_pred hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHHHhCcCCccccccccHHHHHHHHHHh-cCCceEEEEEeCCC
Q 046471 152 FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQY-LMIKRYLIVVDDVW 230 (369)
Q Consensus 152 LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdvw 230 (369)
|++.+++..... .+ ..+|+.. ...+... ++..|...++..............+...+... ..+++++||+||++
T Consensus 59 l~~~l~~~l~~~-~~-~~~~~~~-~~~~~~~--~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~ 133 (269)
T TIGR03015 59 LIRNLLKRLDQE-RV-VAAKLVN-TRVDAED--LLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQ 133 (269)
T ss_pred HHHHHHHhcCCC-Ce-EEeeeeC-CCCCHHH--HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcc
Confidence 999999853322 11 1234333 3356667 99999988876533210000122333333333 36788999999998
Q ss_pred Cc--hhHHHhh
Q 046471 231 RI--EVWDVIR 239 (369)
Q Consensus 231 ~~--~~w~~l~ 239 (369)
.- ..++.+.
T Consensus 134 ~l~~~~~~~l~ 144 (269)
T TIGR03015 134 NLTPELLEELR 144 (269)
T ss_pred cCCHHHHHHHH
Confidence 75 3556554
No 12
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.61 E-value=1.4 Score=34.95 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=58.6
Q ss_pred ccchHHHHHHHHHHhcCCC-CcEEee--------hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHHHhCcCC
Q 046471 127 VGLEDRMEKLLDILKEGPP-QLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSS 197 (369)
Q Consensus 127 vGr~~~~~~l~~~L~~~~~-~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l~~~~ 197 (369)
.|++..+..+...+..... .+-++| ||+.+++. ....-...+++..+....... ....+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLV--VAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhH--HHHHhhhh-----
Confidence 4788888899888876433 455555 88888873 221112355555544332222 11111000
Q ss_pred ccccccccHHHHHHHHHHhcCCceEEEEEeCCCCc--h---hHHHhhhhcCCC---CCCceEEEEecch
Q 046471 198 RLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRI--E---VWDVIREIVPDN---QNGCGVLITLIEI 258 (369)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~--~---~w~~l~~~l~~~---~~gs~IivTTr~~ 258 (369)
............+.-+|++||++.. . .+..+...+... ..+..||+||...
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0111122233456789999999853 2 222222222221 3577888888754
No 13
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.29 E-value=0.43 Score=45.75 Aligned_cols=84 Identities=12% Similarity=0.003 Sum_probs=53.0
Q ss_pred CCcEEee--------hHHHHhcCcCccccccceEEEecCCC--CCcChHHHHHHHHHHhCcCCccccccc--c-HHHHHH
Q 046471 145 PQLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYN--YDADDDQILDMIMKFLMPSSRLSIIKD--K-NYEMKK 211 (369)
Q Consensus 145 ~~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~--~~~~~~~il~~il~~l~~~~~~~~~~~--~-~~~~~~ 211 (369)
+...++| |++.+++....+ ||+..+||++++. .++.+ +++.|+..+-.......+.. . .....+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtD--LqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTD--MQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHH--HHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4566666 999999954333 7999999999866 78888 99998655443322211111 1 112222
Q ss_pred HHHHh-cCCceEEEEEeCCCC
Q 046471 212 KIQQY-LMIKRYLIVVDDVWR 231 (369)
Q Consensus 212 ~l~~~-L~~kr~LlVLDdvw~ 231 (369)
....+ -+|++.+|++|.+-.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 368999999999853
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.68 E-value=4.4 Score=43.57 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=44.8
Q ss_pred HhhhcCCchhhHHHHhhhhcCCCCceechHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeeccCCeEEEEecCc
Q 046471 284 VVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIYKHLT 363 (369)
Q Consensus 284 ~~sy~~L~~~lk~cfly~s~fP~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~~g~~~~~~h~~ 363 (369)
.--++.||++.+..++..|+++. ++.+- .. .+.. ...+...+++|..++++.....+.+. .|..|++
T Consensus 257 ~~v~~~l~~~~~~~l~~~a~~~~---~~~~l-~~-----~l~~---~~~~~~~L~~l~~~~l~~~~~~~~~~-~yr~H~L 323 (903)
T PRK04841 257 EEVLDNVDLETRHFLLRCSVLRS---MNDAL-IV-----RVTG---EENGQMRLEELERQGLFIQRMDDSGE-WFRYHPL 323 (903)
T ss_pred HHHHhcCCHHHHHHHHHhccccc---CCHHH-HH-----HHcC---CCcHHHHHHHHHHCCCeeEeecCCCC-EEehhHH
Confidence 33478999999999999999983 44332 22 2222 23567899999999997532222122 2333887
Q ss_pred ccc
Q 046471 364 MHE 366 (369)
Q Consensus 364 ~hd 366 (369)
++|
T Consensus 324 ~r~ 326 (903)
T PRK04841 324 FAS 326 (903)
T ss_pred HHH
Confidence 765
No 15
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=88.31 E-value=2.3 Score=40.33 Aligned_cols=105 Identities=8% Similarity=0.127 Sum_probs=69.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCc----EEee--------hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHH
Q 046471 123 NSGMVGLEDRMEKLLDILKEGPPQL----SVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIM 190 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~~~~~----~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il 190 (369)
++.+.+|+.++..+..++...+... -+.| +.+++++.. .. ..+|+++-..|+.+. ++..|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~--lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAI--LLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHH--HHHHHH
Confidence 5678899999999999987765311 2223 888888844 22 268999999999999 999999
Q ss_pred HHhCcCCc-ccccc---ccHHHHHHHHHH--hcC--CceEEEEEeCCCCchh
Q 046471 191 KFLMPSSR-LSIIK---DKNYEMKKKIQQ--YLM--IKRYLIVVDDVWRIEV 234 (369)
Q Consensus 191 ~~l~~~~~-~~~~~---~~~~~~~~~l~~--~L~--~kr~LlVLDdvw~~~~ 234 (369)
.+.+..+. +.... .+..+....+.. ... ++.++||||++..-.+
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD 129 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD 129 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence 99962222 11111 123333333333 222 4699999999865433
No 16
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.14 E-value=2.3 Score=37.13 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=23.1
Q ss_pred cccchHHHHHHHHHHhcCCC-CcEEee--------hHHHHhc
Q 046471 126 MVGLEDRMEKLLDILKEGPP-QLSVVA--------FAAEAYS 158 (369)
Q Consensus 126 ~vGr~~~~~~l~~~L~~~~~-~~~vi~--------LA~~vy~ 158 (369)
++||+.+++.|.+++..+.. .+.|.| |++.+.+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH
Confidence 58999999999999987643 444546 8888887
No 17
>PTZ00202 tuzin; Provisional
Probab=85.39 E-value=13 Score=36.44 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=59.4
Q ss_pred CCcCCCCCccccchHHHHHHHHHHhcCCC---CcEEee---------hHHHHhcCcCccccccceEEEecCCCCCcChHH
Q 046471 117 ASLSSKNSGMVGLEDRMEKLLDILKEGPP---QLSVVA---------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQ 184 (369)
Q Consensus 117 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~---~~~vi~---------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~ 184 (369)
+..+.+...++||+.+...|...|.+.+. .+.+|. |++.+..... + .+++.-+. ...+
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eE-- 324 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTED-- 324 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHH--
Confidence 34456678999999999999999875432 233332 8888876322 1 23433333 4577
Q ss_pred HHHHHHHHhCcCCccccccccHHHHHHHHHHhc-----C-CceEEEEEe
Q 046471 185 ILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYL-----M-IKRYLIVVD 227 (369)
Q Consensus 185 il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVLD 227 (369)
+++.|+.+|+..... ...++...|.+.| . |++.+||+-
T Consensus 325 lLr~LL~ALGV~p~~-----~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 325 TLRSVVKALGVPNVE-----ACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHHHcCCCCcc-----cHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999974221 3334444444433 3 667777764
No 18
>PF13173 AAA_14: AAA domain
Probab=85.31 E-value=1.1 Score=35.53 Aligned_cols=51 Identities=12% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHHHhcCCceEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhh
Q 046471 211 KKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIV 261 (369)
Q Consensus 211 ~~l~~~L~~kr~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va 261 (369)
..+.+....+..+|+||++.....|......+-+..+..+|++|+.+....
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred HHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 444444445778899999988888988877777665678999999876554
No 19
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=84.87 E-value=1.4 Score=34.80 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=56.7
Q ss_pred ceEEEecCCCCCcChHHHHHHHHHHhCcCCccccccccHHHHHHHHHHhcCCc-eEEEEEeCCCCc---hhHHHhhhhcC
Q 046471 168 CHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIK-RYLIVVDDVWRI---EVWDVIREIVP 243 (369)
Q Consensus 168 ~~~wv~vs~~~~~~~~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdvw~~---~~w~~l~~~l~ 243 (369)
..+|+..+...+... +.+.|+.+++..... ..+...+...+.+.+... ..+||+|++..- +.++.+.....
T Consensus 39 ~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~---~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 39 DVIYVNCPSSRTPRD--FAQEILEALGLPLKS---RQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN 113 (131)
T ss_dssp EEEEEEHHHHSSHHH--HHHHHHHHHT-SSSS---TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred cEEEEEeCCCCCHHH--HHHHHHHHhCccccc---cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh
Confidence 366898887778888 999999999987654 136677778888888664 469999998543 34444544333
Q ss_pred CCCCCceEEEEecc
Q 046471 244 DNQNGCGVLITLIE 257 (369)
Q Consensus 244 ~~~~gs~IivTTr~ 257 (369)
..+.++|+.-+.
T Consensus 114 --~~~~~vvl~G~~ 125 (131)
T PF13401_consen 114 --ESNIKVVLVGTP 125 (131)
T ss_dssp --SCBEEEEEEESS
T ss_pred --CCCCeEEEEECh
Confidence 556677776554
No 20
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.55 E-value=6.2 Score=37.72 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=66.5
Q ss_pred ccccchHHHHHHHHHHhc---CC--CCcEEee--------hHHHHhcCcCccccccc--eEEEecCCCCCcChHHHHHHH
Q 046471 125 GMVGLEDRMEKLLDILKE---GP--PQLSVVA--------FAAEAYSNSDVKHYFNC--HAWVPEPYNYDADDDQILDMI 189 (369)
Q Consensus 125 ~~vGr~~~~~~l~~~L~~---~~--~~~~vi~--------LA~~vy~~~~v~~~F~~--~~wv~vs~~~~~~~~~il~~i 189 (369)
.+.+|+++++++...|.. +. .++-+.| .++.|.+ ++...... .++|..-...+... ++..|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~--i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQ--VLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHH--HHHHH
Confidence 388999999999988754 22 3455555 6666665 33333211 56776666667778 99999
Q ss_pred HHHhCcCCccccccccHHHHHHHHHHhcC--CceEEEEEeCCCC
Q 046471 190 MKFLMPSSRLSIIKDKNYEMKKKIQQYLM--IKRYLIVVDDVWR 231 (369)
Q Consensus 190 l~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~ 231 (369)
+.+++...... ....+..+.+.+.+. ++.++||||++..
T Consensus 94 ~~~~~~~p~~g---~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 94 LNKLGKVPLTG---DSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred HHHcCCCCCCC---CchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 99997432221 245556666666664 5899999999864
No 21
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=82.48 E-value=7.7 Score=34.64 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=17.7
Q ss_pred hhhcCCchhhHHHHhhhhcCCC
Q 046471 285 VAYCMLPFYLKLCCLYLSVFPV 306 (369)
Q Consensus 285 ~sy~~L~~~lk~cfly~s~fP~ 306 (369)
-+|-+||+..|.=.-|+.+|+.
T Consensus 136 Q~~~~lp~~iR~n~~y~i~~~~ 157 (241)
T PF04665_consen 136 QSYFHLPPNIRSNIDYFIIFNN 157 (241)
T ss_pred eecccCCHHHhhcceEEEEecC
Confidence 3788899998888888888863
No 22
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=78.11 E-value=7.3 Score=40.02 Aligned_cols=133 Identities=15% Similarity=0.059 Sum_probs=77.4
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee--------hHHHHhcCcCccccc---cceEEEecCCC---CCcChHHHHHH
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA--------FAAEAYSNSDVKHYF---NCHAWVPEPYN---YDADDDQILDM 188 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~--------LA~~vy~~~~v~~~F---~~~~wv~vs~~---~~~~~~~il~~ 188 (369)
++++|.+..+..+.+.+.... ..+.++| ||+.+++.......+ ...-|+.+... .+... +...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~--i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE--VTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH--HhHH
Confidence 468999999999888876443 3466666 999998754333333 12456665421 12222 2111
Q ss_pred H---------------HHHhCcCC----------cccc--c-ccc-HHHHHHHHHHhcCCceEEEEEeCCCCc--hhHHH
Q 046471 189 I---------------MKFLMPSS----------RLSI--I-KDK-NYEMKKKIQQYLMIKRYLIVVDDVWRI--EVWDV 237 (369)
Q Consensus 189 i---------------l~~l~~~~----------~~~~--~-~~~-~~~~~~~l~~~L~~kr~LlVLDdvw~~--~~w~~ 237 (369)
+ +...+... .+.+ . ... ....+..|.+.|++++++++.|+.|.. ..|+.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 1 11111100 0000 0 000 123578899999999999998887764 56888
Q ss_pred hhhhcCCCCCCceEEE--Eecch
Q 046471 238 IREIVPDNQNGCGVLI--TLIEI 258 (369)
Q Consensus 238 l~~~l~~~~~gs~Iiv--TTr~~ 258 (369)
++..+..+.+...|++ ||++.
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred hhhhcccCccceEEEEEeccccc
Confidence 8887777666666666 56644
No 23
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=74.70 E-value=4.1 Score=34.15 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=20.2
Q ss_pred ccccchHHHHHHHHHHh--cC-C-CCcEEee--------hHHHHhc
Q 046471 125 GMVGLEDRMEKLLDILK--EG-P-PQLSVVA--------FAAEAYS 158 (369)
Q Consensus 125 ~~vGr~~~~~~l~~~L~--~~-~-~~~~vi~--------LA~~vy~ 158 (369)
.++||+++++++...|. .. . ..+-|+| |.+.++.
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999993 22 1 2344555 6666666
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=71.09 E-value=28 Score=36.57 Aligned_cols=40 Identities=5% Similarity=0.209 Sum_probs=27.8
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecch
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
++.-++|||++..- ..|+.|+..+-.-....++|+||++.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 45557889999754 46888887776555577777766653
No 25
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=70.77 E-value=55 Score=27.10 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=30.4
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecchh
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIEID 259 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~~~ 259 (369)
+++=++|+|++..- +.++.|+..+-.-..++.+|++|.+.+
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 34557899998753 678888888877677899988887653
No 26
>PRK08116 hypothetical protein; Validated
Probab=69.38 E-value=7.1 Score=35.55 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=44.4
Q ss_pred hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHHHhCcCCccccccccHHHHHHHHHHhcCCceEEEEEeCCC-
Q 046471 152 FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVW- 230 (369)
Q Consensus 152 LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw- 230 (369)
||..+++ .+..+-...++++ ... ++..+......... .+..+ +.+.+.+-. ||||||+-
T Consensus 130 La~aia~--~l~~~~~~v~~~~------~~~--ll~~i~~~~~~~~~-----~~~~~----~~~~l~~~d-lLviDDlg~ 189 (268)
T PRK08116 130 LAACIAN--ELIEKGVPVIFVN------FPQ--LLNRIKSTYKSSGK-----EDENE----IIRSLVNAD-LLILDDLGA 189 (268)
T ss_pred HHHHHHH--HHHHcCCeEEEEE------HHH--HHHHHHHHHhcccc-----ccHHH----HHHHhcCCC-EEEEecccC
Confidence 8888888 4433322345554 334 66666655433211 12222 334444434 89999994
Q ss_pred -CchhHHH--hhhhcCC-CCCCceEEEEec
Q 046471 231 -RIEVWDV--IREIVPD-NQNGCGVLITLI 256 (369)
Q Consensus 231 -~~~~w~~--l~~~l~~-~~~gs~IivTTr 256 (369)
....|.. +...+.. -..|..+|+||.
T Consensus 190 e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 3345532 3222221 134677999986
No 27
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.45 E-value=31 Score=33.89 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=60.4
Q ss_pred CCCCccccchHHHHHHHHHHhcC-----CCCcEEee--------hHHHHhcCcCc-cccccceEEEecCCCCCcChHHHH
Q 046471 121 SKNSGMVGLEDRMEKLLDILKEG-----PPQLSVVA--------FAAEAYSNSDV-KHYFNCHAWVPEPYNYDADDDQIL 186 (369)
Q Consensus 121 ~~~~~~vGr~~~~~~l~~~L~~~-----~~~~~vi~--------LA~~vy~~~~v-~~~F~~~~wv~vs~~~~~~~~~il 186 (369)
..+..++||+.++..+.+++... ...+-|-| +-..|+.+..- ...| +++++....--.... ++
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~-~~v~inc~sl~~~~a--iF 223 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSP-VTVYINCTSLTEASA--IF 223 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccc-eeEEEeeccccchHH--HH
Confidence 34678999999999999998642 23455555 55566663211 1112 334443222123455 88
Q ss_pred HHHHHHhCcCCccccccccHHHHHHHHHHhcCCc--eEEEEEeCCCC
Q 046471 187 DMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIK--RYLIVVDDVWR 231 (369)
Q Consensus 187 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdvw~ 231 (369)
..|...+....... ....+.+..+.++.... -||+|||.+..
T Consensus 224 ~kI~~~~~q~~~s~---~~~~~~~~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSP---GTGMQHLEKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHHHHHHHhcCC---chhHHHHHHHHHHHhcccceEEEEechhhH
Confidence 88888772221111 12245566666666554 58999998753
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=66.73 E-value=37 Score=31.55 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=24.7
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee--------hHHHHhc
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA--------FAAEAYS 158 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~--------LA~~vy~ 158 (369)
.+++|++..++.+..++..+. +.+-+.| +|+.+.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999887654 2444444 6666554
No 29
>PRK13342 recombination factor protein RarA; Reviewed
Probab=66.55 E-value=21 Score=34.72 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=52.2
Q ss_pred CccccchHHHHH---HHHHHhcCCC-CcEEee--------hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHH
Q 046471 124 SGMVGLEDRMEK---LLDILKEGPP-QLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMK 191 (369)
Q Consensus 124 ~~~vGr~~~~~~---l~~~L~~~~~-~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~ 191 (369)
.+++|.+..+.. +.+++..+.. .+-+.| ||+.+.+ ..... |+.++....... -++.++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~--~~~~~-----~~~l~a~~~~~~--~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAG--ATDAP-----FEALSAVTSGVK--DLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHH--HhCCC-----EEEEecccccHH--HHHHHHH
Confidence 357888777555 7777765542 333444 8888887 33322 233332211112 2233322
Q ss_pred HhCcCCccccccccHHHHHHHHHHhcCCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEE
Q 046471 192 FLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLI 253 (369)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~Iiv 253 (369)
.+.. ....+++.+|++|+++.- ...+.+...+.. |+.+++
T Consensus 83 ~~~~-------------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 83 EARQ-------------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred HHHH-------------------hhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 2211 012467889999999864 455556555532 555555
No 30
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=66.20 E-value=81 Score=28.30 Aligned_cols=190 Identities=12% Similarity=0.207 Sum_probs=91.5
Q ss_pred cCCCCCccccchHHHHHHHHHHh---cCC--CCcEEeehHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHHHh
Q 046471 119 LSSKNSGMVGLEDRMEKLLDILK---EGP--PQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFL 193 (369)
Q Consensus 119 ~~~~~~~~vGr~~~~~~l~~~L~---~~~--~~~~vi~LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l 193 (369)
..+.-.+++|.+.+++.|++-.. .+. .++-+.| ++..-... +.+.++...
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G-----------------------~rGtGKSS--lVkall~~y 76 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWG-----------------------ARGTGKSS--LVKALLNEY 76 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEec-----------------------CCCCCHHH--HHHHHHHHH
Confidence 34556789999999999886543 221 2233333 22222223 444444433
Q ss_pred CcCCcccc--c---cccHHHHHHHHHHhcCCceEEEEEeCCCCc---hhHHHhhhhcCCC---CCCceEE-EEecchhhh
Q 046471 194 MPSSRLSI--I---KDKNYEMKKKIQQYLMIKRYLIVVDDVWRI---EVWDVIREIVPDN---QNGCGVL-ITLIEIDIV 261 (369)
Q Consensus 194 ~~~~~~~~--~---~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~---~~w~~l~~~l~~~---~~gs~Ii-vTTr~~~va 261 (369)
....-.-. + ..+...+...|+. +..||+|.+||+.=. .....++..+..+ .+...+| .||...+..
T Consensus 77 ~~~GLRlIev~k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 77 ADQGLRLIEVSKEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred hhcCceEEEECHHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 33211000 0 0144444444442 357999999998632 4566666666422 2333344 454434333
Q ss_pred hh-cccccccccc---ccccCCcc------h-----hHhhhcCCch--hhHHHHhhhhcCCCCceechHHHHH---HHHH
Q 046471 262 IS-FHISLKENIE---EALDEPLG------L-----QVVAYCMLPF--YLKLCCLYLSVFPVHFEISTKQLYQ---SWIA 321 (369)
Q Consensus 262 ~~-~~La~k~~~~---~~l~~~~~------i-----l~~sy~~L~~--~lk~cfly~s~fP~~~~i~~~~Li~---~W~a 321 (369)
.. +. ++.. .++..... + |.++|...+. +++-+-.|+.-+ +..++.+.|-. .|..
T Consensus 155 ~E~~~----d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~--g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 155 PESFS----DREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY--GLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhh----hccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHH
Confidence 21 10 1110 12222211 1 7888877765 466666666543 33344433322 3543
Q ss_pred cCCCCCCcHHHHHHHHHHHHhC
Q 046471 322 EGFITDNNEATAEKYLEQLING 343 (369)
Q Consensus 322 eg~i~~~~e~~~~~~~~~L~~r 343 (369)
..=-.+ --+|..|.+.|+.+
T Consensus 229 ~rg~RS--GRtA~QF~~~l~g~ 248 (249)
T PF05673_consen 229 RRGGRS--GRTARQFIDDLAGR 248 (249)
T ss_pred HcCCCC--HHHHHHHHHHHhcC
Confidence 211111 56777787777654
No 31
>CHL00095 clpC Clp protease ATP binding subunit
Probab=65.82 E-value=26 Score=37.40 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=22.7
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA 151 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~ 151 (369)
.+++||+++++.+++.|.... .++-++|
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G 207 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIG 207 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEEC
Confidence 468999999999999998654 4566776
No 32
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=63.88 E-value=57 Score=35.17 Aligned_cols=105 Identities=6% Similarity=0.052 Sum_probs=60.0
Q ss_pred CCccccchHHHHHHHHHHhc---CC-C-Cc-EEee--------hHHHHhcCc--Cc-cccccc--eEEEecCCCCCcChH
Q 046471 123 NSGMVGLEDRMEKLLDILKE---GP-P-QL-SVVA--------FAAEAYSNS--DV-KHYFNC--HAWVPEPYNYDADDD 183 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~---~~-~-~~-~vi~--------LA~~vy~~~--~v-~~~F~~--~~wv~vs~~~~~~~~ 183 (369)
+..+.||++++++|...|.. +. + ++ -|.| .++.|.+.- .. ....+. .++|....-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s- 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA- 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH-
Confidence 46789999999999988864 22 2 22 2444 666665421 00 111221 45565555456677
Q ss_pred HHHHHHHHHhCcCCccccccccHHHHHHHHHHhcC---CceEEEEEeCCCC
Q 046471 184 QILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLM---IKRYLIVVDDVWR 231 (369)
Q Consensus 184 ~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVLDdvw~ 231 (369)
+...|..++....... ..........+...+. +...+||||+|..
T Consensus 833 -IYqvI~qqL~g~~P~~--GlsS~evLerLF~~L~k~~r~v~IIILDEID~ 880 (1164)
T PTZ00112 833 -AYQVLYKQLFNKKPPN--ALNSFKILDRLFNQNKKDNRNVSILIIDEIDY 880 (1164)
T ss_pred -HHHHHHHHHcCCCCCc--cccHHHHHHHHHhhhhcccccceEEEeehHhh
Confidence 8899998885443211 1133344445555442 2246899999864
No 33
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=62.03 E-value=52 Score=29.52 Aligned_cols=112 Identities=10% Similarity=0.151 Sum_probs=59.4
Q ss_pred CCCcCCCCCccccchHHHHHHHHHHh---cC--CCCcEEee--------hHHHHhcCcCccccccceEEEecCCCCCcCh
Q 046471 116 PASLSSKNSGMVGLEDRMEKLLDILK---EG--PPQLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADD 182 (369)
Q Consensus 116 ~~~~~~~~~~~vGr~~~~~~l~~~L~---~~--~~~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~ 182 (369)
|....++-..++|.|..++.|++-.. .+ ..++-..| |++.+.+ .+....-. -|.|++. ++
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-dl-- 124 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-DL-- 124 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-HH--
Confidence 34444566789999999998886543 22 23444444 6666665 32222111 2222211 00
Q ss_pred HHHHHHHHHHhCcCCccccccccHHHHHHHHHHhcCCceEEEEEeCCCCc---hhHHHhhhhcCCC---CCCceEEEEec
Q 046471 183 DQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRI---EVWDVIREIVPDN---QNGCGVLITLI 256 (369)
Q Consensus 183 ~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~---~~w~~l~~~l~~~---~~gs~IivTTr 256 (369)
.+...+.+.|+. ...||.|..||..=+ +....++..+..+ .+...++..|.
T Consensus 125 ---------------------~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 125 ---------------------ATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred ---------------------hhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 022223333322 257999999999643 5677787777633 23444555554
Q ss_pred c
Q 046471 257 E 257 (369)
Q Consensus 257 ~ 257 (369)
|
T Consensus 182 N 182 (287)
T COG2607 182 N 182 (287)
T ss_pred C
Confidence 3
No 34
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=59.98 E-value=7.3 Score=33.99 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=28.4
Q ss_pred CceEEEEEeCCCCc---hhHHHhhhhcCCCCCCceEEEEecchhhhhhc
Q 046471 219 IKRYLIVVDDVWRI---EVWDVIREIVPDNQNGCGVLITLIEIDIVISF 264 (369)
Q Consensus 219 ~kr~LlVLDdvw~~---~~w~~l~~~l~~~~~gs~IivTTr~~~va~~~ 264 (369)
+.--++|||||... .....+...+......+.+||||.++.+...+
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34558899999765 33445555555445568999999988887654
No 35
>PF14162 YozD: YozD-like protein
Probab=59.11 E-value=11 Score=24.55 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhCCCcee
Q 046471 330 EATAEKYLEQLINGGFVIL 348 (369)
Q Consensus 330 e~~~~~~~~~L~~r~ll~~ 348 (369)
|++|+-+|++|+.||++-.
T Consensus 11 EEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHccCCCc
Confidence 8999999999999999853
No 36
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=59.02 E-value=82 Score=29.06 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=26.6
Q ss_pred CCccccchHHHHHHHHHHhcCC-CCcEEe-e--------hHHHHhc
Q 046471 123 NSGMVGLEDRMEKLLDILKEGP-PQLSVV-A--------FAAEAYS 158 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~~-~~~~vi-~--------LA~~vy~ 158 (369)
-.+++|.+..++.+..++..+. +++-++ | +|+.+++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 4578999999999999997654 233332 4 8888877
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=57.88 E-value=25 Score=31.01 Aligned_cols=37 Identities=22% Similarity=0.467 Sum_probs=21.5
Q ss_pred EEEEEeCCCCc---hhHHH-hhhhcCCC-CCCceEEEEecch
Q 046471 222 YLIVVDDVWRI---EVWDV-IREIVPDN-QNGCGVLITLIEI 258 (369)
Q Consensus 222 ~LlVLDdvw~~---~~w~~-l~~~l~~~-~~gs~IivTTr~~ 258 (369)
-+|+|||+|.. ..|+. +...+... ..|+.+||+|.+.
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 48999999973 56653 33333321 2466676655543
No 38
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=56.33 E-value=1.4e+02 Score=27.92 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=25.5
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecch
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
+++-++|+|++..- ...+.+...+......+.+|++|.+.
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 157 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEP 157 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCH
Confidence 44558889987543 55677777775544566766666443
No 39
>PRK04195 replication factor C large subunit; Provisional
Probab=56.18 E-value=59 Score=32.34 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=26.0
Q ss_pred CCccccchHHHHHHHHHHhcC---C--CCcEEee--------hHHHHhcC
Q 046471 123 NSGMVGLEDRMEKLLDILKEG---P--PQLSVVA--------FAAEAYSN 159 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~---~--~~~~vi~--------LA~~vy~~ 159 (369)
-.+++|.++.++.+.+|+..- . ..+-+.| +|+.+.+.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999998642 1 2233333 88888873
No 40
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=55.11 E-value=44 Score=32.89 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=66.0
Q ss_pred CCccccchHHHHHHHHHHhcCCCCcEEee--------hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHHHhC
Q 046471 123 NSGMVGLEDRMEKLLDILKEGPPQLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLM 194 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l~ 194 (369)
..++++.++..+.+...|.... ++.+.| +|+.+.+.......|+...||++++.++..+ ++....
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~-~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeD--FI~G~r---- 246 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK-NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYED--FIQGYR---- 246 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC-CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHH--HhcccC----
Confidence 3568889999999999887543 455555 8888877443445788899999999888777 554321
Q ss_pred cCCccccccccHHHHHHHHHHhcC--CceEEEEEeCCCCch---hHHHhhhhc
Q 046471 195 PSSRLSIIKDKNYEMKKKIQQYLM--IKRYLIVVDDVWRIE---VWDVIREIV 242 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~~~---~w~~l~~~l 242 (369)
...... . ....-....+...-. +++|+||+|++...+ .+..+...+
T Consensus 247 P~~vgy-~-~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 PNGVGF-R-RKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred CCCCCe-E-ecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 110000 0 000111222223222 468999999996542 344444434
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=54.79 E-value=1.5e+02 Score=27.06 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=20.5
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA 151 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~ 151 (369)
.+++|+++.++.+..++..+. +.+-+.|
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G 45 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAG 45 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEEC
Confidence 468899999999999987654 3344444
No 42
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=54.18 E-value=60 Score=29.79 Aligned_cols=122 Identities=15% Similarity=0.040 Sum_probs=64.2
Q ss_pred CccccchHHHHHHHHHHhcC----C--CCcEEee--------hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHH
Q 046471 124 SGMVGLEDRMEKLLDILKEG----P--PQLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMI 189 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~----~--~~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~i 189 (369)
.+++|++..++.|..++... . ..+-+.| ||+.+.+ .....|. .+..+. ..... .+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~~---~~~~~~-~~~~~--~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNLK---ITSGPA-LEKPG--DLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCEE---Eeccch-hcCch--hHHHH
Confidence 46899999999999888631 1 2234444 8888887 3332221 111111 11222 34444
Q ss_pred HHHhCcCCccccccccH----HHHHHHHHHhcCCceEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhh
Q 046471 190 MKFLMPSSRLSIIKDKN----YEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIV 261 (369)
Q Consensus 190 l~~l~~~~~~~~~~~~~----~~~~~~l~~~L~~kr~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va 261 (369)
+..+....--. -++. ....+.+...+.+.+..+|+++..+...|.. .+| +.+-|..||+...+.
T Consensus 76 l~~~~~~~vl~--iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~ 143 (305)
T TIGR00635 76 LTNLEEGDVLF--IDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLT 143 (305)
T ss_pred HHhcccCCEEE--EehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccC
Confidence 44444321000 0111 1234557777778888888888766655432 222 245566677654443
No 43
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=53.90 E-value=53 Score=31.24 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=17.1
Q ss_pred CCCCccccchHHHHHHHHHHh
Q 046471 121 SKNSGMVGLEDRMEKLLDILK 141 (369)
Q Consensus 121 ~~~~~~vGr~~~~~~l~~~L~ 141 (369)
....++.|+++.++.|.+.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~ 139 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVE 139 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHH
Confidence 345678999999999998874
No 44
>PRK10865 protein disaggregation chaperone; Provisional
Probab=50.05 E-value=67 Score=34.55 Aligned_cols=36 Identities=8% Similarity=0.337 Sum_probs=27.5
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee------------hHHHHhcC
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA------------FAAEAYSN 159 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~------------LA~~vy~~ 159 (369)
.+++||+.++..+++.|.... .++-++| ||+.+.+.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~ 226 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIING 226 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcC
Confidence 468999999999999998755 3555666 77766653
No 45
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=49.85 E-value=60 Score=34.94 Aligned_cols=28 Identities=7% Similarity=0.363 Sum_probs=22.3
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA 151 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~ 151 (369)
.+++||+.++.+++..|.... .++-++|
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G 201 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIG 201 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEc
Confidence 468999999999999998754 4555666
No 46
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.75 E-value=1.3e+02 Score=31.31 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=28.5
Q ss_pred CCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCce-EEEEecchhhh
Q 046471 218 MIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCG-VLITLIEIDIV 261 (369)
Q Consensus 218 ~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~-IivTTr~~~va 261 (369)
.++.-++|+|++..- ..++.|+..+-.-..+.+ |++||....+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 456678999999653 577788777755444555 45555555554
No 47
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=49.10 E-value=1.4e+02 Score=31.22 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=18.7
Q ss_pred CCccccchHHHHHHHHHHhcCC
Q 046471 123 NSGMVGLEDRMEKLLDILKEGP 144 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~~ 144 (369)
-.+++|.+.-++.|.+++..+.
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r 36 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR 36 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC
Confidence 3579999999999999998765
No 48
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=48.59 E-value=1.6e+02 Score=27.28 Aligned_cols=102 Identities=15% Similarity=0.244 Sum_probs=62.9
Q ss_pred Cccccch---HHHHHHHHHHhcCC----CCcEEee--------hHHHHhcC-cC----ccccccceEEEecCCCCCcChH
Q 046471 124 SGMVGLE---DRMEKLLDILKEGP----PQLSVVA--------FAAEAYSN-SD----VKHYFNCHAWVPEPYNYDADDD 183 (369)
Q Consensus 124 ~~~vGr~---~~~~~l~~~L~~~~----~~~~vi~--------LA~~vy~~-~~----v~~~F~~~~wv~vs~~~~~~~~ 183 (369)
+..+|.. +-.+.+.++|..+. +++-++| ++++..+. +. -...+ .++.|.+...++...
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~- 111 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERR- 111 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHH-
Confidence 3445543 23444555554432 4567777 66655532 11 01122 466778888899999
Q ss_pred HHHHHHHHHhCcCCccccccccHHHHHHHHHHhcCC-ceEEEEEeCCCC
Q 046471 184 QILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMI-KRYLIVVDDVWR 231 (369)
Q Consensus 184 ~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdvw~ 231 (369)
+...|+.+++...... .+...+.......|+. +-=+||+|.+-+
T Consensus 112 -~Y~~IL~~lgaP~~~~---~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 112 -FYSAILEALGAPYRPR---DRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred -HHHHHHHHhCcccCCC---CCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 9999999999986543 3555556566666654 445789999965
No 49
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=44.12 E-value=94 Score=33.45 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=25.1
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCC-----------CCceEEEEecc
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQ-----------NGCGVLITLIE 257 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~-----------~gs~IivTTr~ 257 (369)
....+|+||++... +.++.+...+..+. ..+-||+||..
T Consensus 667 ~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 667 KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 45679999999643 46666666655432 34566777653
No 50
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.79 E-value=2.5e+02 Score=28.31 Aligned_cols=40 Identities=5% Similarity=0.211 Sum_probs=26.1
Q ss_pred CCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecc
Q 046471 218 MIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIE 257 (369)
Q Consensus 218 ~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~ 257 (369)
.+++-++|+|++..- ...+.+...+-.....+.+|++|.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 356678999998643 4567777777654456666665543
No 51
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=43.09 E-value=93 Score=22.59 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=31.1
Q ss_pred echHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeecc
Q 046471 310 ISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEA 352 (369)
Q Consensus 310 i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~ 352 (369)
|.-.++|. |+.+.+-.....+.|-.+.+.|.+.++|+++...
T Consensus 30 F~G~e~Vd-WL~~~~~~~~~r~eAv~lgq~Ll~~g~I~hv~~~ 71 (83)
T cd04449 30 FIGSEAVS-WLINNFEDVDTREEAVELGQELMNEGLIEHVSGR 71 (83)
T ss_pred eEhHHHHH-HHHHhCCCCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 44667787 7776553222278999999999999999998643
No 52
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.76 E-value=91 Score=32.84 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCC--chhHHHhhhhcCCCCCCceEEEE
Q 046471 219 IKRYLIVVDDVWR--IEVWDVIREIVPDNQNGCGVLIT 254 (369)
Q Consensus 219 ~kr~LlVLDdvw~--~~~w~~l~~~l~~~~~gs~IivT 254 (369)
+++.+|+|||++. ...++.+...+. .|+.++++
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~ 142 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIG 142 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEE
Confidence 4678999999964 355666665443 36666663
No 53
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.44 E-value=31 Score=34.59 Aligned_cols=43 Identities=5% Similarity=0.128 Sum_probs=27.4
Q ss_pred CCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEe-cchhh
Q 046471 218 MIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITL-IEIDI 260 (369)
Q Consensus 218 ~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTT-r~~~v 260 (369)
.+++-++|+|+++.. ..++.+...+......+.+|++| ....+
T Consensus 114 ~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 114 RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM 159 (504)
T ss_pred cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhC
Confidence 356668999998754 56777877776544455555554 33443
No 54
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=41.95 E-value=2.3e+02 Score=27.40 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=24.6
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecc
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIE 257 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~ 257 (369)
+++-++++|++..- ...+.+...+-....++.+|++|.+
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 45557888998653 4556666666554556666666554
No 55
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=40.21 E-value=66 Score=29.41 Aligned_cols=83 Identities=8% Similarity=0.112 Sum_probs=45.1
Q ss_pred CCcEEee--------hHHHHhcCcCccccc-cceEEEecCCCCC-cChHHHHHHHHHHhCcC-------Cccccccc--c
Q 046471 145 PQLSVVA--------FAAEAYSNSDVKHYF-NCHAWVPEPYNYD-ADDDQILDMIMKFLMPS-------SRLSIIKD--K 205 (369)
Q Consensus 145 ~~~~vi~--------LA~~vy~~~~v~~~F-~~~~wv~vs~~~~-~~~~~il~~il~~l~~~-------~~~~~~~~--~ 205 (369)
++..++| ||+.+++ .++.+| +..+++-+++... +.+ +.+++...=... .....+.. -
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e--~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGND--LYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHH--HHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4567777 9999998 565566 4466777776543 334 555444321100 00000000 1
Q ss_pred HHHHHHHHHHhc---CCceEEEEEeCCCC
Q 046471 206 NYEMKKKIQQYL---MIKRYLIVVDDVWR 231 (369)
Q Consensus 206 ~~~~~~~l~~~L---~~kr~LlVLDdvw~ 231 (369)
.....-.+.+++ +++.+|+++||+-.
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 112223455555 38999999999853
No 56
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=39.87 E-value=92 Score=29.75 Aligned_cols=40 Identities=8% Similarity=0.059 Sum_probs=27.0
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecch
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
+.+-++|+||+..- ...+.+...+..-..++.+|++|.+.
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 45678999998643 56667777776544566677766654
No 57
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=39.47 E-value=51 Score=31.93 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=36.1
Q ss_pred ceEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhhhh
Q 046471 220 KRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVIS 263 (369)
Q Consensus 220 kr~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va~~ 263 (369)
++.+|+||.|.....|......+.+.++. +|++|+.+...-..
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~ 136 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSK 136 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhcc
Confidence 78899999999999999998888877666 89999887766543
No 58
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.44 E-value=2.5e+02 Score=28.54 Aligned_cols=41 Identities=7% Similarity=0.125 Sum_probs=26.9
Q ss_pred CCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEE-Eecch
Q 046471 218 MIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLI-TLIEI 258 (369)
Q Consensus 218 ~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~Iiv-TTr~~ 258 (369)
.+++-++|+|++..- ..++.+...+-.....+.+|+ ||...
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~ 160 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChh
Confidence 456668999998643 567778777766555666655 54433
No 59
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=38.33 E-value=48 Score=27.17 Aligned_cols=84 Identities=13% Similarity=0.127 Sum_probs=49.1
Q ss_pred chhHHHHHHHHHHHHhhHhhhhhhccCcccCchHHHHHHHHHHHhccccchhhhhhhhcccCCCCCCcccccccCccchh
Q 046471 3 ITFRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGEDEVDNPDLGRKSIALPMNLK 82 (369)
Q Consensus 3 ~~~~~~l~~L~~~L~~i~~~L~~a~~~~~~~~~~~~~~w~~~Lrdlayd~eD~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (369)
.+|+.-+++|..++.++.-.+.+-+.-. ..++..-+.-.+.|.+..-+.++++..+.. ....+.+..+.-.+
T Consensus 30 ~~fk~~l~~L~sTl~~i~P~i~eI~~~~-~eld~~~~ee~e~L~~~L~~g~~LV~k~sk-------~~r~n~~kk~~y~~ 101 (147)
T PF05659_consen 30 LSFKSILKRLESTLESIIPIIKEIDKLN-VELDRPRQEEIERLKELLEKGKELVEKCSK-------VRRWNLYKKPRYAR 101 (147)
T ss_pred HhhhhHHHHHHHHHHHhhhHHHHHHHHh-hhcCCchhHHHHHHHHHHHHHHHHHHHhcc-------ccHHHHHhhHhHHH
Confidence 5789999999999999999988876532 111211134455566665666666644311 11122223333446
Q ss_pred hHHHHHHHHHHh
Q 046471 83 RINDIKQRMQQL 94 (369)
Q Consensus 83 ~i~~i~~~l~~~ 94 (369)
+|+++.+.+..+
T Consensus 102 Ki~~le~~l~~f 113 (147)
T PF05659_consen 102 KIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHHHH
Confidence 777777776655
No 60
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=37.70 E-value=2.4e+02 Score=30.46 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=15.8
Q ss_pred CccccchHHHHHHHHHHhc
Q 046471 124 SGMVGLEDRMEKLLDILKE 142 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~ 142 (369)
..++|.+..++.+.+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~ 583 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRR 583 (852)
T ss_pred cccCCChHHHHHHHHHHHH
Confidence 4689999999999888864
No 61
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.22 E-value=2.9e+02 Score=27.77 Aligned_cols=39 Identities=5% Similarity=0.180 Sum_probs=26.1
Q ss_pred CCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEec
Q 046471 218 MIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLI 256 (369)
Q Consensus 218 ~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr 256 (369)
.++.-++|+|++..- ...+.+...+......+++|++|.
T Consensus 117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 356668899999753 567777777665555676666554
No 62
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=37.07 E-value=30 Score=28.77 Aligned_cols=49 Identities=6% Similarity=0.074 Sum_probs=31.7
Q ss_pred HHHHHhcCC-ceEEEEEeCCCCc-----hhHHHhhhhcCCCCCCceEEEEecchh
Q 046471 211 KKIQQYLMI-KRYLIVVDDVWRI-----EVWDVIREIVPDNQNGCGVLITLIEID 259 (369)
Q Consensus 211 ~~l~~~L~~-kr~LlVLDdvw~~-----~~w~~l~~~l~~~~~gs~IivTTr~~~ 259 (369)
...++.+.. .-=|||||++-.. -..+.+...+.....+.-+|+|.|+..
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 344455544 5569999998543 234556665655556778999999753
No 63
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=35.96 E-value=1e+02 Score=22.48 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=32.4
Q ss_pred echHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeecc
Q 046471 310 ISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEA 352 (369)
Q Consensus 310 i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~ 352 (369)
|.-..||.+.+..|.+.. .+.|-.+-+.|++.|+|+++...
T Consensus 31 F~GselVdWL~~~~~~~s--R~eAv~lg~~Ll~~G~i~HV~~~ 71 (83)
T cd04443 31 FCGCDLVSWLIEVGLAQD--RGEAVLYGRRLLQGGVLQHITNE 71 (83)
T ss_pred ccHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCCC
Confidence 556778886665566655 78999999999999999998653
No 64
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=35.84 E-value=1.2e+02 Score=21.00 Aligned_cols=41 Identities=20% Similarity=0.419 Sum_probs=32.2
Q ss_pred echHHHHHHHHH--cCCCCCCcHHHHHHHHHHHHhCCCceeeecc
Q 046471 310 ISTKQLYQSWIA--EGFITDNNEATAEKYLEQLINGGFVILIEEA 352 (369)
Q Consensus 310 i~~~~Li~~W~a--eg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~ 352 (369)
|.-..+|.+-+. +|++.. .+.|...-++|++.++|+++...
T Consensus 18 F~G~e~v~WL~~~~~~~~~~--r~eA~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 18 FTGSEAVDWLMDNFEGFVRD--REEAVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp EEHHHHHHHHHHTSCTSTSS--HHHHHHHHHHHHHCTSEEESSSS
T ss_pred eEhHHHHHHHHHhccccccC--HHHHHHHHHHHHHCCCEEECCCC
Confidence 566677775554 566665 89999999999999999997654
No 65
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=35.27 E-value=1.3e+02 Score=31.86 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=22.3
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA 151 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~ 151 (369)
.+++||+.+++.+++.|.... .++-++|
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G 210 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVG 210 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEEC
Confidence 478999999999999997654 4566666
No 66
>PRK08181 transposase; Validated
Probab=34.86 E-value=1.2e+02 Score=27.70 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=19.1
Q ss_pred EEEEEeCCCCc---hhHH-HhhhhcCCCCCCceEEEEecch
Q 046471 222 YLIVVDDVWRI---EVWD-VIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 222 ~LlVLDdvw~~---~~w~-~l~~~l~~~~~gs~IivTTr~~ 258 (369)
=||||||+-.. ..|. .+...+..-..+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 48999998533 2222 2333332111123588888743
No 67
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.20 E-value=3.2e+02 Score=28.28 Aligned_cols=38 Identities=5% Similarity=0.168 Sum_probs=25.5
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEec
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLI 256 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr 256 (369)
++.=++|||+|..- ..++.+...+..-....++|++|.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 45558899999753 567778777765445666665553
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=33.39 E-value=1.8e+02 Score=31.34 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=22.5
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA 151 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~ 151 (369)
.+++||+.++.+++..|.... .++-++|
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG 215 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTG 215 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEEC
Confidence 578999999999999988764 4556666
No 69
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.74 E-value=2.6e+02 Score=28.58 Aligned_cols=38 Identities=5% Similarity=0.188 Sum_probs=24.6
Q ss_pred CceEEEEEeCCCC--chhHHHhhhhcCCCCCCceEEEEec
Q 046471 219 IKRYLIVVDDVWR--IEVWDVIREIVPDNQNGCGVLITLI 256 (369)
Q Consensus 219 ~kr~LlVLDdvw~--~~~w~~l~~~l~~~~~gs~IivTTr 256 (369)
+++-++|+|++.. .+..+.|...+......+.+|++|.
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 4567899999853 3556777766655445666666553
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.61 E-value=2.4e+02 Score=30.50 Aligned_cols=44 Identities=7% Similarity=0.095 Sum_probs=28.8
Q ss_pred CCceEEEEEeCCCC--chhHHHhhhhcCCCCCCceEEEEe-cchhhh
Q 046471 218 MIKRYLIVVDDVWR--IEVWDVIREIVPDNQNGCGVLITL-IEIDIV 261 (369)
Q Consensus 218 ~~kr~LlVLDdvw~--~~~w~~l~~~l~~~~~gs~IivTT-r~~~va 261 (369)
.+++-++|||++.. .+.++.|+..+-.-....++|++| ....+.
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 46777999999864 367788877776544556665544 444443
No 71
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=32.16 E-value=2.8e+02 Score=25.78 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=36.5
Q ss_pred hHhhhcCCchhhHHHHh-hhhcCCCCceechHHHHHHHHHcCCCCCCcHHHHHHHHH-HHHhCCCceeee
Q 046471 283 QVVAYCMLPFYLKLCCL-YLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLE-QLINGGFVILIE 350 (369)
Q Consensus 283 l~~sy~~L~~~lk~cfl-y~s~fP~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~~~-~L~~r~ll~~~~ 350 (369)
+...+..|++..+.-+. ....|+.+ .+..+.+... +... ...++..++ .|++.+|++...
T Consensus 250 ~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~------lg~~-~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 250 LGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAA------LGEE-RDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred hCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHH------HCCC-cchHHHHhhHHHHHcCCcccCC
Confidence 45566677776555443 66667665 3555444332 2222 566777777 899999997543
No 72
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=31.79 E-value=57 Score=30.34 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHhhHhhhhhhccCcccCchHHHHHHHHHHHhccccchhhhhhh
Q 046471 5 FRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQK 59 (369)
Q Consensus 5 ~~~~l~~L~~~L~~i~~~L~~a~~~~~~~~~~~~~~w~~~Lrdlayd~eD~ld~~ 59 (369)
++.-++-++.+|++++.||....+.+-...+ +.+.....+-+.||.+|=++|..
T Consensus 319 lKnQiqvIQ~elesLqpFLk~V~ee~~nkh~-~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 319 LKNQIQVIQTELESLQPFLKHVVEEPHNKHD-TNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhccchhhh-hhhhHHHHHHHHHhheeeeeehh
Confidence 5667888999999999999888665434433 37788888889999999888754
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.67 E-value=4.5e+02 Score=24.89 Aligned_cols=38 Identities=5% Similarity=0.209 Sum_probs=26.9
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEec
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLI 256 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr 256 (369)
+++-++|+|++..- ..++.+...+.......++|++|.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 45568999998754 357777777766555677777764
No 74
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=31.41 E-value=5.1e+02 Score=26.25 Aligned_cols=39 Identities=8% Similarity=0.295 Sum_probs=26.0
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecc
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIE 257 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~ 257 (369)
+++-++|+|++..- +..+.++..+-.-...+++|++|.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 45668899998643 5567777766554556777766654
No 75
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.10 E-value=4e+02 Score=27.88 Aligned_cols=40 Identities=8% Similarity=0.196 Sum_probs=27.3
Q ss_pred CCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecc
Q 046471 218 MIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIE 257 (369)
Q Consensus 218 ~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~ 257 (369)
.+++-++|+|++..- ...+.+...+.....+.++|++|.+
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 356668999998653 4667777776654556677776654
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=30.38 E-value=4.7e+02 Score=26.28 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=31.0
Q ss_pred cCCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEE-Eecchhhhh
Q 046471 217 LMIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLI-TLIEIDIVI 262 (369)
Q Consensus 217 L~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~Iiv-TTr~~~va~ 262 (369)
+.+++-++|+|+++.- ..|+.+...+......+.+|+ ||+...+..
T Consensus 125 ~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 125 LQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred ccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 3467778999999864 568888877765555666554 555555543
No 77
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=30.25 E-value=4.5e+02 Score=27.79 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=14.6
Q ss_pred CccccchHHHHHHHHHHhc
Q 046471 124 SGMVGLEDRMEKLLDILKE 142 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~ 142 (369)
..++|.+..++.+.+.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~ 472 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKR 472 (731)
T ss_pred cceeCcHHHHHHHHHHHHH
Confidence 4578888888888887763
No 78
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=29.64 E-value=1.9e+02 Score=30.77 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=22.5
Q ss_pred CccccchHHHHHHHHHHhcC-CCCcEEee
Q 046471 124 SGMVGLEDRMEKLLDILKEG-PPQLSVVA 151 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~-~~~~~vi~ 151 (369)
..++||++++.++++.|... ..++-++|
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvG 214 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVG 214 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEEC
Confidence 46899999999999999875 34566666
No 79
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.52 E-value=5.6e+02 Score=26.49 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=26.9
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEe-cchhhh
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITL-IEIDIV 261 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTT-r~~~va 261 (369)
+++=++|+|++..- ..++.+...+..-..++.+|++| ....+-
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 34557899987543 56777877776555566666544 444443
No 80
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.32 E-value=4.9e+02 Score=24.54 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.0
Q ss_pred CCccccchHHHHHHHHHHhcCC
Q 046471 123 NSGMVGLEDRMEKLLDILKEGP 144 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~~ 144 (369)
-.+++|.+..++.+.+.+..+.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~ 37 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH 37 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC
Confidence 3568999999999999997654
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=27.72 E-value=2.7e+02 Score=26.79 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=49.0
Q ss_pred hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHHHhCcCCccccccccHHHHHHHHHHhcCCceEEEEEeCCCC
Q 046471 152 FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWR 231 (369)
Q Consensus 152 LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~ 231 (369)
||+.+.+..+-.. ..||..|-.-.-.. =++.|+++.... ..|.++|-.|.+|.|..
T Consensus 178 lArlia~tsk~~S----yrfvelSAt~a~t~--dvR~ife~aq~~------------------~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 178 LARLIASTSKKHS----YRFVELSATNAKTN--DVRDIFEQAQNE------------------KSLTKRKTILFIDEIHR 233 (554)
T ss_pred HHHHHHhhcCCCc----eEEEEEeccccchH--HHHHHHHHHHHH------------------HhhhcceeEEEeHHhhh
Confidence 9999998443333 55777776554444 466666654332 23457889999999853
Q ss_pred --chhHHHhhhhcCCCCCCceEEE--Eecchh
Q 046471 232 --IEVWDVIREIVPDNQNGCGVLI--TLIEID 259 (369)
Q Consensus 232 --~~~w~~l~~~l~~~~~gs~Iiv--TTr~~~ 259 (369)
..+-+. .+|.-.+|+-++| ||.+.+
T Consensus 234 FNksQQD~---fLP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 234 FNKSQQDT---FLPHVENGDITLIGATTENPS 262 (554)
T ss_pred hhhhhhhc---ccceeccCceEEEecccCCCc
Confidence 223222 3455556887777 666553
No 82
>PRK12608 transcription termination factor Rho; Provisional
Probab=27.19 E-value=1.7e+02 Score=28.15 Aligned_cols=93 Identities=12% Similarity=0.030 Sum_probs=50.6
Q ss_pred HHHHHHHhc--CCCCcEEee--------hHHHHhcCcCccc-cccc-eEEEecCCCC-CcChHHHHHHHHHHhCcCCccc
Q 046471 134 EKLLDILKE--GPPQLSVVA--------FAAEAYSNSDVKH-YFNC-HAWVPEPYNY-DADDDQILDMIMKFLMPSSRLS 200 (369)
Q Consensus 134 ~~l~~~L~~--~~~~~~vi~--------LA~~vy~~~~v~~-~F~~-~~wv~vs~~~-~~~~~~il~~il~~l~~~~~~~ 200 (369)
.++++.+.. ..++..|+| |++.+.+ .+.. +=+. .+|+.+++.. ++.+ +++.+...+.......
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~d--f~~~i~~~Vvast~de 196 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTD--MRRSVKGEVYASTFDR 196 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHH--HHHHHhhhEEeecCCC
Confidence 447777764 234566666 5555554 2221 1133 4777777654 5566 8888877766543221
Q ss_pred cccc--cHHHHHHHHHHhc--CCceEEEEEeCCC
Q 046471 201 IIKD--KNYEMKKKIQQYL--MIKRYLIVVDDVW 230 (369)
Q Consensus 201 ~~~~--~~~~~~~~l~~~L--~~kr~LlVLDdvw 230 (369)
.+.. ........+.+++ ++++.+||+|++-
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1111 1111222223333 5899999999984
No 83
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=26.86 E-value=3.2e+02 Score=26.25 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=16.6
Q ss_pred CCCCccccchHHHHHHHHHHh
Q 046471 121 SKNSGMVGLEDRMEKLLDILK 141 (369)
Q Consensus 121 ~~~~~~vGr~~~~~~l~~~L~ 141 (369)
....++.|+++.+++|.+.+.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~ 148 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVE 148 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHH
Confidence 334578999999999988763
No 84
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=25.51 E-value=1.6e+02 Score=21.46 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=30.6
Q ss_pred chHHHHHHHHHcCC--CCCCcHHHHHHHHHHHHhCCCceeeeccC
Q 046471 311 STKQLYQSWIAEGF--ITDNNEATAEKYLEQLINGGFVILIEEAK 353 (369)
Q Consensus 311 ~~~~Li~~W~aeg~--i~~~~e~~~~~~~~~L~~r~ll~~~~~~~ 353 (369)
.-..||. |+.+.+ +.. .+.|..|-+.|+..++|..+....
T Consensus 31 ~GsdlVd-WL~~~~~~~~~--R~eAv~~g~~Ll~~G~i~HV~~~h 72 (84)
T cd04438 31 IGSDLVD-WLLSHVEGLTD--RREARKYASSLLKLGYIRHTVNKI 72 (84)
T ss_pred cchHHHH-HHHHhCCCCCC--HHHHHHHHHHHHHCCcEEecCCCc
Confidence 3556777 777755 333 789999999999999999876543
No 85
>PRK12377 putative replication protein; Provisional
Probab=25.37 E-value=2.5e+02 Score=25.14 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=20.3
Q ss_pred CceEEEEEeCCCCc--hhHH--HhhhhcCC-CCCCceEEEEec
Q 046471 219 IKRYLIVVDDVWRI--EVWD--VIREIVPD-NQNGCGVLITLI 256 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~--~l~~~l~~-~~~gs~IivTTr 256 (369)
.+-=||||||+-.. ..|. .+...+.. -.++-.+||||.
T Consensus 162 ~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 162 CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 35568999999432 3443 23333321 122345788876
No 86
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=25.24 E-value=1.9e+02 Score=20.14 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=30.7
Q ss_pred echHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeec
Q 046471 310 ISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEE 351 (369)
Q Consensus 310 i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~ 351 (369)
|.-..+|.+-+..+.+.. .+.|..+-+.|++.++|.++..
T Consensus 21 F~G~e~v~wL~~~~~~~~--r~eA~~l~~~ll~~g~i~~v~~ 60 (77)
T smart00049 21 FTGSELVDWLMDNLEIID--REEAVHLGQLLLDEGLIHHVNG 60 (77)
T ss_pred eEcHHHHHHHHHcCCcCC--HHHHHHHHHHHHHCCCEEEeCC
Confidence 566677774445555433 7999999999999999999873
No 87
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=25.09 E-value=91 Score=26.40 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=18.9
Q ss_pred cCCceEEEEEeCCCCc-hhHHHhhhhcCCCC
Q 046471 217 LMIKRYLIVVDDVWRI-EVWDVIREIVPDNQ 246 (369)
Q Consensus 217 L~~kr~LlVLDdvw~~-~~w~~l~~~l~~~~ 246 (369)
+++|++||| |||-+. .........+...+
T Consensus 95 v~gk~VLIV-DDIidTG~Tl~~~~~~Lk~~G 124 (181)
T PRK09162 95 LKGRTVLVV-DDILDEGHTLAAIRDRCLEMG 124 (181)
T ss_pred CCCCEEEEE-ccccCcHHHHHHHHHHHHhCC
Confidence 567777665 998766 45666666665443
No 88
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=24.96 E-value=2.1e+02 Score=20.69 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=31.8
Q ss_pred echHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeecc
Q 046471 310 ISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEA 352 (369)
Q Consensus 310 i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~ 352 (369)
|.-..||.+-+..|.+.. .+.|-.+-+.|++.++|+++...
T Consensus 29 F~GselVdWL~~~~~~~~--R~eAv~~gq~Ll~~g~i~hV~~~ 69 (81)
T cd04448 29 ILGKELVNWLIRQGKAAT--RVQAIAIGQALLDAGWIECVSDD 69 (81)
T ss_pred cChHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCCC
Confidence 345567876666766544 78999999999999999998654
No 89
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.94 E-value=5.9e+02 Score=27.44 Aligned_cols=44 Identities=7% Similarity=0.210 Sum_probs=27.7
Q ss_pred CCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEe-cchhhh
Q 046471 218 MIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITL-IEIDIV 261 (369)
Q Consensus 218 ~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTT-r~~~va 261 (369)
.+++-++|||++..- ..++.|+..+..-...+.+|++| ....+.
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 355557889998643 56777777776555566665544 444443
No 90
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=24.84 E-value=2.1e+02 Score=18.73 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=40.6
Q ss_pred CCchhhHHHHhhhhcCCCCceechHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeec
Q 046471 289 MLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEE 351 (369)
Q Consensus 289 ~L~~~lk~cfly~s~fP~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~ 351 (369)
+|++..-..+.++.-+|.+ .+....|...+-- - .......++.|..++++.....
T Consensus 2 glt~~q~~vL~~l~~~~~~-~~t~~~la~~l~~---~----~~~vs~~v~~L~~~Glv~r~~~ 56 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGE-ELTQSELAERLGI---S----KSTVSRIVKRLEKKGLVERERD 56 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTS-GEEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEEE-
T ss_pred ccCHHHHHHHHHHHHCCCC-CcCHHHHHHHHCc---C----HHHHHHHHHHHHHCCCEEEeCC
Confidence 4666677788888888887 4667777766521 1 5678889999999999987654
No 91
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=24.41 E-value=1.6e+02 Score=22.56 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCceeeeccCCeEEEE
Q 046471 330 EATAEKYLEQLINGGFVILIEEAKGLVFIY 359 (369)
Q Consensus 330 e~~~~~~~~~L~~r~ll~~~~~~~g~~~~~ 359 (369)
--+|...|++|.++|+|.++..+.+...|.
T Consensus 73 ~SlAr~~Lr~L~~kG~Ik~V~k~~~~~IYt 102 (105)
T PF03297_consen 73 GSLARKALRELESKGLIKPVSKHHRQRIYT 102 (105)
T ss_dssp CHHHHHHHHHHHHCCSSEEEECCTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEeccCCeEEEe
Confidence 468999999999999999987665444443
No 92
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=23.92 E-value=2.1e+02 Score=21.01 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=32.2
Q ss_pred echHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeecc
Q 046471 310 ISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEA 352 (369)
Q Consensus 310 i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~ 352 (369)
|.-.++|.+-+..|.+.. .+.|-.+-+.|.+.++|+.+...
T Consensus 33 F~GsElVdWL~~~~~~~s--R~eAv~lgq~Ll~~gii~HV~~~ 73 (85)
T cd04441 33 FVGSEFIDWLLQEGEAES--RREAVQLCRRLLEHGIIQHVSNK 73 (85)
T ss_pred eEchHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCCC
Confidence 445677887777775544 78999999999999999987643
No 93
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=23.91 E-value=2.2e+02 Score=20.66 Aligned_cols=41 Identities=10% Similarity=0.184 Sum_probs=31.1
Q ss_pred echHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeecc
Q 046471 310 ISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEA 352 (369)
Q Consensus 310 i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~ 352 (369)
+.-..+|.+-+..+.+.. .+.|-.+-+.|++.++|.++...
T Consensus 29 F~GselVdWL~~~~~~~~--r~eAv~lg~~Ll~~G~i~HV~~~ 69 (81)
T cd04439 29 FLGNEFVSWLLEIGEISK--PEEGVNLGQALLENGIIHHVSDK 69 (81)
T ss_pred eEhHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCCC
Confidence 556778885555555444 67899999999999999998653
No 94
>PRK10536 hypothetical protein; Provisional
Probab=23.48 E-value=85 Score=28.43 Aligned_cols=40 Identities=8% Similarity=0.267 Sum_probs=26.7
Q ss_pred hcCCceE---EEEEeCCCCchhHHHhhhhcCCCCCCceEEEEec
Q 046471 216 YLMIKRY---LIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLI 256 (369)
Q Consensus 216 ~L~~kr~---LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr 256 (369)
+++|..+ +||+|...+... ..+...+..-+.||++|+|=-
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEeCC
Confidence 5667544 999999876543 444444444457999998754
No 95
>PRK08939 primosomal protein DnaI; Reviewed
Probab=22.76 E-value=2.4e+02 Score=26.23 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=53.2
Q ss_pred cchHHHHHHHHHHhcC-----CCCcEEee--------hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHHHhC
Q 046471 128 GLEDRMEKLLDILKEG-----PPQLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLM 194 (369)
Q Consensus 128 Gr~~~~~~l~~~L~~~-----~~~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l~ 194 (369)
++........+++..- ..++-+.| ||..+.+ .....=-...+++++ . ++..+-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~~------~--l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHFP------E--FIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEHH------H--HHHHHHHHHh
Confidence 4444455555665531 22455555 7777776 322221224555553 3 6666655543
Q ss_pred cCCccccccccHHHHHHHHHHhcCCceEEEEEeCCCCc--hhHH--Hhhhhc-CCC-CCCceEEEEec
Q 046471 195 PSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRI--EVWD--VIREIV-PDN-QNGCGVLITLI 256 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~--~~w~--~l~~~l-~~~-~~gs~IivTTr 256 (369)
.. +..+ .+ +.++ +-=||||||+-.. ..|. .+...+ ... ..+..+|+||.
T Consensus 205 ~~--------~~~~---~l-~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 205 DG--------SVKE---KI-DAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred cC--------cHHH---HH-HHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 21 2222 22 2232 4568999999543 4674 344333 221 24567888886
No 96
>CHL00095 clpC Clp protease ATP binding subunit
Probab=22.26 E-value=8.9e+02 Score=26.00 Aligned_cols=45 Identities=11% Similarity=0.286 Sum_probs=27.1
Q ss_pred HHHhcCCce-EEEEEeCCCCc--hhHHHhhhhcCCC-----------CCCceEEEEecc
Q 046471 213 IQQYLMIKR-YLIVVDDVWRI--EVWDVIREIVPDN-----------QNGCGVLITLIE 257 (369)
Q Consensus 213 l~~~L~~kr-~LlVLDdvw~~--~~w~~l~~~l~~~-----------~~gs~IivTTr~ 257 (369)
|.+.++.+. .+++||++... +.++.+...+..+ ...+-||+||..
T Consensus 603 l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 603 LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 444454444 58889999754 5677776666543 134456667664
No 97
>PRK08727 hypothetical protein; Validated
Probab=22.15 E-value=1.5e+02 Score=26.08 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=20.7
Q ss_pred EEEEEeCCCCc---hhHHHh-hhhcCC-CCCCceEEEEecc
Q 046471 222 YLIVVDDVWRI---EVWDVI-REIVPD-NQNGCGVLITLIE 257 (369)
Q Consensus 222 ~LlVLDdvw~~---~~w~~l-~~~l~~-~~~gs~IivTTr~ 257 (369)
-+|||||+... ..|... ...+.. ...|..||+||+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 48999998643 234322 222211 1246679999984
No 98
>PF13730 HTH_36: Helix-turn-helix domain
Probab=21.58 E-value=2.3e+02 Score=18.12 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=32.2
Q ss_pred CCchhhHHHHhhhhcCCC--Cceec-hHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCc
Q 046471 289 MLPFYLKLCCLYLSVFPV--HFEIS-TKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFV 346 (369)
Q Consensus 289 ~L~~~lk~cfly~s~fP~--~~~i~-~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll 346 (369)
+|++..+..++|+.-|.. +.-++ .+.|.. .. |.- .....+++++|+.+|+|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~-~~--g~s----~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAK-DL--GVS----RRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHH-HH--CcC----HHHHHHHHHHHHHCcCC
Confidence 577777888887776642 22232 233322 22 222 67889999999999986
No 99
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=21.56 E-value=2.5e+02 Score=21.00 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=33.8
Q ss_pred echHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeecc
Q 046471 310 ISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEA 352 (369)
Q Consensus 310 i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~ 352 (369)
|.-.+||.+-+..|-+.. .+.|..|-+.|++.++++.+...
T Consensus 38 FvGsElVdWLi~~g~~~t--R~eAv~~gq~Ll~~gii~HV~~~ 78 (93)
T cd04440 38 VPASKLVDWLLAQGDCRT--REEAVILGVGLCNNGFMHHVLEK 78 (93)
T ss_pred cchhHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCEEecCCC
Confidence 445678888788887775 78999999999999999987654
No 100
>PLN03025 replication factor C subunit; Provisional
Probab=21.50 E-value=6.5e+02 Score=23.23 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEec
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLI 256 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr 256 (369)
++.-+++||++..- ...+.+...+......+++|++|.
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACN 137 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeC
Confidence 45668999999654 334455554443344677777764
No 101
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=21.36 E-value=2.1e+02 Score=30.38 Aligned_cols=115 Identities=12% Similarity=0.270 Sum_probs=0.0
Q ss_pred CccccchHHHHHHHHHHhcCC----CCcEEee------------------hHHHHhcCcCccccccceEEEecCCCCCcC
Q 046471 124 SGMVGLEDRMEKLLDILKEGP----PQLSVVA------------------FAAEAYSNSDVKHYFNCHAWVPEPYNYDAD 181 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~----~~~~vi~------------------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~ 181 (369)
..++|.++.++.+.+.+.... +.-+-+| ||..+|.++.---.||..=|
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy---------- 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEY---------- 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHH----------
Q ss_pred hHHHHHHHHHHhCcCCccccccccHHHHHHHHHHhcCCceE-EEEEeCCCCc--hhHHHhhhhcCCCC----CC------
Q 046471 182 DDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRY-LIVVDDVWRI--EVWDVIREIVPDNQ----NG------ 248 (369)
Q Consensus 182 ~~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdvw~~--~~w~~l~~~l~~~~----~g------ 248 (369)
.-+.-.+.|-+..++. ...++ ...|.+.++.|.| +|.||.|... +..+-+...|.+|. .|
T Consensus 561 ---~EkHsVSrLIGaPPGY---VGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 561 ---MEKHSVSRLIGAPPGY---VGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred ---HHHHHHHHHhCCCCCC---ceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecc
Q ss_pred -ceEEEEe
Q 046471 249 -CGVLITL 255 (369)
Q Consensus 249 -s~IivTT 255 (369)
+-||+||
T Consensus 634 NtiIImTS 641 (786)
T COG0542 634 NTIIIMTS 641 (786)
T ss_pred eeEEEEec
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.96 E-value=7.6e+02 Score=25.26 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.2
Q ss_pred CCccccchHHHHHHHHHHhcCC
Q 046471 123 NSGMVGLEDRMEKLLDILKEGP 144 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~~ 144 (369)
-.+++|.+.-++.|.+.+..+.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~ 36 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR 36 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC
Confidence 3578999999999999987764
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=20.79 E-value=2e+02 Score=25.35 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=21.3
Q ss_pred EEEEeCCCCc---hhHHH-hhhhcCC-CCCCceEEEEecch
Q 046471 223 LIVVDDVWRI---EVWDV-IREIVPD-NQNGCGVLITLIEI 258 (369)
Q Consensus 223 LlVLDdvw~~---~~w~~-l~~~l~~-~~~gs~IivTTr~~ 258 (369)
+||+||+... ..|+. +...+.. ...|..||+||+..
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 6789999532 45643 4333321 23467889888743
No 104
>PRK06835 DNA replication protein DnaC; Validated
Probab=20.49 E-value=7.2e+02 Score=23.34 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=19.6
Q ss_pred EEEEEeCCCCc--hhH--HHhhhhcCC-CCCCceEEEEec
Q 046471 222 YLIVVDDVWRI--EVW--DVIREIVPD-NQNGCGVLITLI 256 (369)
Q Consensus 222 ~LlVLDdvw~~--~~w--~~l~~~l~~-~~~gs~IivTTr 256 (369)
=||||||+-.. ..| +.+...+.. -..+..+||||.
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 47999999543 333 233333321 123556888886
No 105
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=20.07 E-value=1.5e+02 Score=24.83 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=26.4
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEec
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLI 256 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr 256 (369)
+.+-++|+|++..- +.++.+...+......+.+|++|+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 45668899998543 457777777765555677777775
No 106
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=20.04 E-value=1.4e+02 Score=23.02 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.1
Q ss_pred chHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeeccC
Q 046471 311 STKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAK 353 (369)
Q Consensus 311 ~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~~ 353 (369)
.-..+|.+-+..++... ...|..+=+.|++.++|+++....
T Consensus 33 ~Gse~VDWLv~~~~~i~--R~EAv~l~q~Lmd~gli~hV~~~s 73 (109)
T cd04444 33 LGSALVDWLISNSFAAS--RLEAVTLASMLMEENFLRPVGVRS 73 (109)
T ss_pred cchHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCchhhHHHHh
Confidence 34556786677777664 789999999999999999987554
Done!