Query 046471
Match_columns 369
No_of_seqs 260 out of 2281
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.5E-34 5.2E-39 288.7 15.1 228 127-368 131-464 (549)
2 1vt4_I APAF-1 related killer D 99.9 1.1E-27 3.6E-32 246.0 11.0 224 125-367 129-435 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 1.1E-26 3.6E-31 252.1 15.2 235 119-368 119-445 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.9 2.2E-22 7.7E-27 202.5 15.0 228 122-367 122-444 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.2 2E-11 6.7E-16 95.3 4.6 60 5-64 24-83 (115)
6 1w5s_A Origin recognition comp 97.7 5.9E-05 2E-09 71.5 7.6 131 123-259 21-190 (412)
7 2qen_A Walker-type ATPase; unk 97.0 0.00079 2.7E-08 62.0 6.4 128 121-259 9-175 (350)
8 2v1u_A Cell division control p 96.9 0.0042 1.4E-07 57.8 10.1 130 123-258 18-177 (387)
9 1fnn_A CDC6P, cell division co 96.8 0.0076 2.6E-07 56.2 10.9 130 124-259 17-170 (389)
10 2qby_B CDC6 homolog 3, cell di 96.8 0.0014 4.7E-08 61.3 5.5 131 124-259 20-175 (384)
11 2qby_A CDC6 homolog 1, cell di 96.6 0.0027 9.1E-08 59.2 6.6 132 123-260 19-175 (386)
12 2fna_A Conserved hypothetical 96.4 0.0081 2.8E-07 55.1 8.1 127 122-259 11-181 (357)
13 2chg_A Replication factor C sm 95.2 0.14 4.9E-06 42.9 10.4 114 123-258 16-142 (226)
14 1njg_A DNA polymerase III subu 94.5 0.13 4.5E-06 43.7 8.6 41 218-258 124-166 (250)
15 1sxj_B Activator 1 37 kDa subu 91.3 0.64 2.2E-05 41.6 8.3 113 124-258 21-147 (323)
16 1iqp_A RFCS; clamp loader, ext 85.6 1.3 4.5E-05 39.5 6.3 40 219-258 109-150 (327)
17 1jbk_A CLPB protein; beta barr 84.8 0.93 3.2E-05 36.6 4.5 36 123-158 21-65 (195)
18 3te6_A Regulatory protein SIR3 82.4 4.8 0.00017 36.3 8.5 101 125-232 21-144 (318)
19 2chq_A Replication factor C sm 77.2 10 0.00034 33.4 8.9 40 219-258 101-142 (319)
20 1jr3_A DNA polymerase III subu 75.9 28 0.00096 31.3 11.8 40 218-257 117-158 (373)
21 3n70_A Transport activator; si 75.1 22 0.00076 27.3 9.5 35 125-159 2-47 (145)
22 3u61_B DNA polymerase accessor 72.8 10 0.00036 33.7 7.8 109 123-258 25-146 (324)
23 3h4m_A Proteasome-activating n 65.8 17 0.00057 31.6 7.5 20 122-141 15-34 (285)
24 2qz4_A Paraplegin; AAA+, SPG7, 61.0 65 0.0022 27.1 10.4 18 123-140 5-22 (262)
25 2w58_A DNAI, primosome compone 56.9 8.9 0.0003 31.4 3.8 103 131-256 36-157 (202)
26 3co5_A Putative two-component 53.8 25 0.00084 27.0 5.7 36 124-159 4-50 (143)
27 3syl_A Protein CBBX; photosynt 51.6 27 0.00091 30.6 6.3 37 222-258 132-179 (309)
28 2kzc_A Uncharacterized protein 49.5 9.9 0.00034 26.9 2.3 40 311-352 9-48 (85)
29 1w5s_A Origin recognition comp 44.3 25 0.00084 32.2 5.0 68 283-351 299-373 (412)
30 1g5t_A COB(I)alamin adenosyltr 43.9 24 0.00081 29.3 4.3 51 208-258 107-163 (196)
31 1hqc_A RUVB; extended AAA-ATPa 40.3 58 0.002 28.5 6.7 36 123-158 11-60 (324)
32 3nku_A DRRA, SIDM; posttransla 37.1 17 0.00059 27.9 2.1 45 5-56 28-79 (213)
33 2gkw_B Tumor necrosis factor r 36.9 21 0.00072 18.5 1.7 19 241-259 3-21 (26)
34 1r6b_X CLPA protein; AAA+, N-t 31.3 4E+02 0.014 26.5 12.3 28 124-151 186-214 (758)
35 3vfd_A Spastin; ATPase, microt 31.1 2.4E+02 0.0082 25.4 9.5 19 122-140 113-131 (389)
36 1sxj_D Activator 1 41 kDa subu 30.9 79 0.0027 27.9 6.1 36 123-158 36-80 (353)
37 3eie_A Vacuolar protein sortin 30.5 2.3E+02 0.0078 24.8 9.0 19 122-140 16-34 (322)
38 2zan_A Vacuolar protein sortin 30.3 2E+02 0.0068 26.7 8.9 20 121-140 131-150 (444)
39 3d8b_A Fidgetin-like protein 1 28.7 1.5E+02 0.0051 26.6 7.5 19 123-141 83-101 (357)
40 1xwi_A SKD1 protein; VPS4B, AA 28.5 3E+02 0.01 24.1 10.5 20 122-141 10-29 (322)
41 3viq_A SWI5-dependent recombin 27.2 50 0.0017 25.0 3.3 55 3-57 10-64 (122)
42 1sxj_A Activator 1 95 kDa subu 26.7 1.4E+02 0.0049 28.3 7.4 20 123-142 38-57 (516)
43 1hqc_A RUVB; extended AAA-ATPa 26.2 8.1 0.00028 34.3 -1.6 30 319-348 289-324 (324)
44 3lqv_P Splicing factor 3B subu 23.6 26 0.00088 20.6 0.8 9 302-310 30-38 (39)
45 1qvr_A CLPB protein; coiled co 23.0 3.6E+02 0.012 27.4 9.9 28 124-151 170-198 (854)
46 2qp9_X Vacuolar protein sortin 22.8 2.5E+02 0.0087 25.0 7.9 20 122-141 49-68 (355)
47 3ec2_A DNA replication protein 22.7 32 0.0011 27.4 1.5 39 220-258 100-143 (180)
48 3cf0_A Transitional endoplasmi 22.3 2E+02 0.0069 24.9 7.0 19 123-141 14-32 (301)
49 2z4s_A Chromosomal replication 21.8 1.5E+02 0.0053 27.5 6.4 44 214-257 188-236 (440)
50 1uhw_A Pleckstrin; three-helix 21.0 1.4E+02 0.0047 22.1 4.6 39 311-351 39-77 (109)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.5e-34 Score=288.66 Aligned_cols=228 Identities=18% Similarity=0.223 Sum_probs=173.3
Q ss_pred ccchHHHHHHHHHHhcC-CCCcEEee-----------hHHHHhc--CcCccccccceEEEecCCCC--CcChHHHHHHHH
Q 046471 127 VGLEDRMEKLLDILKEG-PPQLSVVA-----------FAAEAYS--NSDVKHYFNCHAWVPEPYNY--DADDDQILDMIM 190 (369)
Q Consensus 127 vGr~~~~~~l~~~L~~~-~~~~~vi~-----------LA~~vy~--~~~v~~~F~~~~wv~vs~~~--~~~~~~il~~il 190 (369)
|||+.++++|.++|..+ +...+||+ ||+++|+ +.+++.+|++++||++++.+ +... +++.|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~--~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFD--LFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHH--HHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHH--HHHHHH
Confidence 69999999999999765 33455555 9999998 78999999999999999985 7788 999999
Q ss_pred HHhCcCCc----cccccccHHHHHHHHHHhcCCc-eEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhhhhcc
Q 046471 191 KFLMPSSR----LSIIKDKNYEMKKKIQQYLMIK-RYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVISFH 265 (369)
Q Consensus 191 ~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va~~~~ 265 (369)
.+++.... ......+.+.+...+++.|++| ||||||||||+.+.+ .+.. .+||+||||||+..|+..+.
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 99987632 1111225678899999999996 999999999998754 1111 16999999999999987651
Q ss_pred ----------c--------------------------------------ccc--------c------ccccccc--CCc-
Q 046471 266 ----------I--------------------------------------SLK--------E------NIEEALD--EPL- 280 (369)
Q Consensus 266 ----------L--------------------------------------a~k--------~------~~~~~l~--~~~- 280 (369)
| |.+ + .+.+.+. ...
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~ 362 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVG 362 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSST
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHH
Confidence 1 111 0 0000110 111
Q ss_pred --chhHhhhcCCchhhHHHHh-----------hhhcCCCCceechHHHHHHHHHc--CCCCCCc-----HHHHHHHHHHH
Q 046471 281 --GLQVVAYCMLPFYLKLCCL-----------YLSVFPVHFEISTKQLYQSWIAE--GFITDNN-----EATAEKYLEQL 340 (369)
Q Consensus 281 --~il~~sy~~L~~~lk~cfl-----------y~s~fP~~~~i~~~~Li~~W~ae--g~i~~~~-----e~~~~~~~~~L 340 (369)
.+|.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +++++ ||++|
T Consensus 363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L 437 (549)
T 2a5y_B 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRL 437 (549)
T ss_dssp TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHT
T ss_pred HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHH
Confidence 3489999999999999999 999999999999 8999999 9997543 77787 99999
Q ss_pred HhCCCceeeeccCCeEEEEecCcccccC
Q 046471 341 INGGFVILIEEAKGLVFIYKHLTMHEQE 368 (369)
Q Consensus 341 ~~r~ll~~~~~~~g~~~~~~h~~~hdl~ 368 (369)
+++||+++...+ +...|.+||+|||+|
T Consensus 438 ~~rsLl~~~~~~-~~~~~~mHdlv~~~a 464 (549)
T 2a5y_B 438 SKRGALLSGKRM-PVLTFKIDHIIHMFL 464 (549)
T ss_dssp TTBSSCSEEECS-SSCEEECCHHHHHHH
T ss_pred HHcCCeeEecCC-CceEEEeChHHHHHH
Confidence 999999987653 222344599999976
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=1.1e-27 Score=246.04 Aligned_cols=224 Identities=17% Similarity=0.122 Sum_probs=168.1
Q ss_pred ccccchHHHHHHHHHHhcCCCCcEEee-----------hHHHHhcCcCccccccc-eEEEecCCCCCcChHHHHHHHHHH
Q 046471 125 GMVGLEDRMEKLLDILKEGPPQLSVVA-----------FAAEAYSNSDVKHYFNC-HAWVPEPYNYDADDDQILDMIMKF 192 (369)
Q Consensus 125 ~~vGr~~~~~~l~~~L~~~~~~~~vi~-----------LA~~vy~~~~v~~~F~~-~~wv~vs~~~~~~~~~il~~il~~ 192 (369)
..|||+.++++|.++|...+. .+||+ ||+++|++.+++.+|++ ++||++++.++... ++..|+..
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~-~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~--IL~~Ll~l 205 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET--VLEMLQKL 205 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCS-SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHH--HHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCC-CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHH--HHHHHHHH
Confidence 359999999999999986332 33444 99999998889999987 99999999998888 88888775
Q ss_pred hCcCC---cccc-----ccccHHHHHHHHHHhc---CCceEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhh
Q 046471 193 LMPSS---RLSI-----IKDKNYEMKKKIQQYL---MIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIV 261 (369)
Q Consensus 193 l~~~~---~~~~-----~~~~~~~~~~~l~~~L---~~kr~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va 261 (369)
++... .... ...+.+.+...|++.| .+||+||||||||+.+.|+.+. +||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHH
Confidence 43211 1000 0124566677788766 7899999999999988887652 599999999999987
Q ss_pred hhc--------c-------c------------------------------ccc-------cc----ccccccCCcc---h
Q 046471 262 ISF--------H-------I------------------------------SLK-------EN----IEEALDEPLG---L 282 (369)
Q Consensus 262 ~~~--------~-------L------------------------------a~k-------~~----~~~~l~~~~~---i 282 (369)
..+ . | |.+ .. ..|....... +
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aa 358 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHH
Confidence 422 1 1 111 00 0121111222 3
Q ss_pred hHhhhcCCchhh-HHHHhhhhcCCCCceechHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeeccCCeEEEEec
Q 046471 283 QVVAYCMLPFYL-KLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIYKH 361 (369)
Q Consensus 283 l~~sy~~L~~~l-k~cfly~s~fP~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~~g~~~~~~h 361 (369)
|.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.++.+|++|+++|||++.. +...|.+|
T Consensus 359 LelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~---~~~rYrMH 429 (1221)
T 1vt4_I 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP---KESTISIP 429 (1221)
T ss_dssp HHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS---SSSEEBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC---CCCEEEeh
Confidence 999999999999 99999999999999999999999999987 246899999999999999841 12234558
Q ss_pred Cccccc
Q 046471 362 LTMHEQ 367 (369)
Q Consensus 362 ~~~hdl 367 (369)
++++||
T Consensus 430 DLllEL 435 (1221)
T 1vt4_I 430 SIYLEL 435 (1221)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 888775
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=1.1e-26 Score=252.14 Aligned_cols=235 Identities=19% Similarity=0.197 Sum_probs=174.9
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCCcEEee-----------hHHHHhcCcCc-cccc-cceEEEecCCCCCcChHHH
Q 046471 119 LSSKNSGMVGLEDRMEKLLDILKEGPPQLSVVA-----------FAAEAYSNSDV-KHYF-NCHAWVPEPYNYDADDDQI 185 (369)
Q Consensus 119 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~-----------LA~~vy~~~~v-~~~F-~~~~wv~vs~~~~~~~~~i 185 (369)
.+.....+|||++++++|.++|...+...++|+ ||+++|++.++ ..+| +.++||++++.++...-..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 334566799999999999999986655555555 99999997543 5566 5577999998654322015
Q ss_pred HHHHHHHhCcCCccc-cccccHHHHHHHHHHhcCCc--eEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhhh
Q 046471 186 LDMIMKFLMPSSRLS-IIKDKNYEMKKKIQQYLMIK--RYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVI 262 (369)
Q Consensus 186 l~~il~~l~~~~~~~-~~~~~~~~~~~~l~~~L~~k--r~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va~ 262 (369)
++.++..+....... ....+.+.+...++..|.+| ||||||||||+...|+.+ ++||+||||||++.|+.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 777888877653211 11247888999999999987 999999999998877654 56999999999999985
Q ss_pred hc----c-------c------------------------------------ccc--------cc-------------ccc
Q 046471 263 SF----H-------I------------------------------------SLK--------EN-------------IEE 274 (369)
Q Consensus 263 ~~----~-------L------------------------------------a~k--------~~-------------~~~ 274 (369)
.+ + | |.+ .. ...
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCC
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhh
Confidence 43 0 1 111 00 000
Q ss_pred cccCC-----c---chhHhhhcCCchhhHHHHhhhhcCCCCceechHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCc
Q 046471 275 ALDEP-----L---GLQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFV 346 (369)
Q Consensus 275 ~l~~~-----~---~il~~sy~~L~~~lk~cfly~s~fP~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll 346 (369)
.+... . .+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.+|++|+++||+
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSC
T ss_pred hcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccce
Confidence 11110 1 239999999999999999999999999999999999999765 78899999999999999
Q ss_pred eeeeccCCeEEEEecCcccccC
Q 046471 347 ILIEEAKGLVFIYKHLTMHEQE 368 (369)
Q Consensus 347 ~~~~~~~g~~~~~~h~~~hdl~ 368 (369)
+....+ +...|.+|++||+.+
T Consensus 425 ~~~~~~-~~~~~~~h~l~~~~~ 445 (1249)
T 3sfz_A 425 FCNRNG-KSFCYYLHDLQVDFL 445 (1249)
T ss_dssp EEEESS-SSEEEECCHHHHHHH
T ss_pred EEecCC-CceEEEecHHHHHHH
Confidence 975432 233355599999864
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=202.55 Aligned_cols=228 Identities=18% Similarity=0.202 Sum_probs=163.2
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCcEEee-----------hHHHHhcCcCc-cccc-cceEEEecCCCCCcChHHHHHH
Q 046471 122 KNSGMVGLEDRMEKLLDILKEGPPQLSVVA-----------FAAEAYSNSDV-KHYF-NCHAWVPEPYNYDADDDQILDM 188 (369)
Q Consensus 122 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~-----------LA~~vy~~~~v-~~~F-~~~~wv~vs~~~~~~~~~il~~ 188 (369)
....+|||+.+++.|.++|.......++|+ ||+.+|++.++ ..+| +.++|+++++. +... ++..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~--~~~~ 198 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSG--LLMK 198 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHH--HHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHH--HHHH
Confidence 456799999999999999985433333333 99999997666 7889 57999999875 3333 4444
Q ss_pred H---HHHhCcCCc-cccccccHHHHHHHHHHhcCC--ceEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhhh
Q 046471 189 I---MKFLMPSSR-LSIIKDKNYEMKKKIQQYLMI--KRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVI 262 (369)
Q Consensus 189 i---l~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va~ 262 (369)
+ ...++.... ......+.+.+...+++.|.+ +++||||||||+...++.+ ++||+||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 4 445542111 111123677888888888876 7899999999987665432 45899999999998876
Q ss_pred hc-------c----c------------------------------------ccc--------cccccc------------
Q 046471 263 SF-------H----I------------------------------------SLK--------ENIEEA------------ 275 (369)
Q Consensus 263 ~~-------~----L------------------------------------a~k--------~~~~~~------------ 275 (369)
.+ . | |.+ ....|.
T Consensus 272 ~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~ 351 (591)
T 1z6t_A 272 SVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFK 351 (591)
T ss_dssp TCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCC
T ss_pred hcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHH
Confidence 53 0 1 000 000010
Q ss_pred -ccC-----Ccc---hhHhhhcCCchhhHHHHhhhhcCCCCceechHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCc
Q 046471 276 -LDE-----PLG---LQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFV 346 (369)
Q Consensus 276 -l~~-----~~~---il~~sy~~L~~~lk~cfly~s~fP~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll 346 (369)
+.. ... ++.+||+.||++.|.||++||+||+|+.|+.+.++.+|.++ .+.++.++++|+++||+
T Consensus 352 ~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLL 424 (591)
T ss_dssp CSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSS
T ss_pred HhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCe
Confidence 010 012 39999999999999999999999999999999999999764 56789999999999999
Q ss_pred eeeeccCCeEEEEecCccccc
Q 046471 347 ILIEEAKGLVFIYKHLTMHEQ 367 (369)
Q Consensus 347 ~~~~~~~g~~~~~~h~~~hdl 367 (369)
+....+ +...|.+|+++||.
T Consensus 425 ~~~~~~-~~~~~~~H~lv~~~ 444 (591)
T 1z6t_A 425 FCDRNG-KSFRYYLHDLQVDF 444 (591)
T ss_dssp EEEEET-TEEEEECCHHHHHH
T ss_pred EEecCC-CccEEEEcHHHHHH
Confidence 965432 33345559999875
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.16 E-value=2e-11 Score=95.29 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHhhHhhhhhhccCcccCchHHHHHHHHHHHhccccchhhhhhhhcccC
Q 046471 5 FRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGEDE 64 (369)
Q Consensus 5 ~~~~l~~L~~~L~~i~~~L~~a~~~~~~~~~~~~~~w~~~Lrdlayd~eD~ld~~~~~~~ 64 (369)
++..+++|+++|++|+++|.+|++++.+..++.++.|+.+||+++||+|||+|+|.++..
T Consensus 24 v~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 24 VKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999854445688999999999999999999999988654
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.71 E-value=5.9e-05 Score=71.50 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=84.0
Q ss_pred CCccccchHHHHHHHHHH-hc---C---CCCcEEe---e--------hHHHHhcCcCcccc-----cc-ceEEEecCCCC
Q 046471 123 NSGMVGLEDRMEKLLDIL-KE---G---PPQLSVV---A--------FAAEAYSNSDVKHY-----FN-CHAWVPEPYNY 178 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L-~~---~---~~~~~vi---~--------LA~~vy~~~~v~~~-----F~-~~~wv~vs~~~ 178 (369)
+..++||+.+++.|.++| .. + .....+| | ||+.+++ ..... |+ ..+|+......
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCCC
Confidence 467999999999999988 42 2 3345555 4 9998887 33322 22 25777766666
Q ss_pred CcChHHHHHHHHHHhCcCCccccccccHHHHHHHHHHhcC--CceEEEEEeCCCCc--------hhHHHhhhhcCCC---
Q 046471 179 DADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLM--IKRYLIVVDDVWRI--------EVWDVIREIVPDN--- 245 (369)
Q Consensus 179 ~~~~~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~~--------~~w~~l~~~l~~~--- 245 (369)
+... ++..++.+++...... ..+...+...+.+.|. +++++|||||++.- +.+..+...+...
T Consensus 99 ~~~~--~~~~l~~~l~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 99 NLYT--ILSLIVRQTGYPIQVR--GAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp SHHH--HHHHHHHHHTCCCCCT--TCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CHHH--HHHHHHHHhCCCCCCC--CCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 7778 9999999987643211 1245566666777765 68999999999763 3333333333211
Q ss_pred C--CCceEEEEecchh
Q 046471 246 Q--NGCGVLITLIEID 259 (369)
Q Consensus 246 ~--~gs~IivTTr~~~ 259 (369)
+ ....+|+||+...
T Consensus 175 ~~~~~v~lI~~~~~~~ 190 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVR 190 (412)
T ss_dssp TSCCBEEEEEEEEETH
T ss_pred CCCceEEEEEEecccc
Confidence 2 3445787887554
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.04 E-value=0.00079 Score=61.95 Aligned_cols=128 Identities=10% Similarity=0.123 Sum_probs=77.1
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCCcEEee--------hHHHHhcCcCccccccceEEEecCCCC------CcChHHHH
Q 046471 121 SKNSGMVGLEDRMEKLLDILKEGPPQLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYNY------DADDDQIL 186 (369)
Q Consensus 121 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~~------~~~~~~il 186 (369)
..+..++||+.+.+.|.+++..+ ..+.|.| |++++.+. . . .+|+.+.... +... ++
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~--~~ 78 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREE--LI 78 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHH--HH
T ss_pred CChHhcCChHHHHHHHHHHHhcC-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHH--HH
Confidence 44567999999999999998764 2333444 88888873 2 1 6677654332 3445 66
Q ss_pred HHHHHHhCcC--------------C-ccccccccHHHHHHHHHHhcCC-ceEEEEEeCCCCchh---------HHHhhhh
Q 046471 187 DMIMKFLMPS--------------S-RLSIIKDKNYEMKKKIQQYLMI-KRYLIVVDDVWRIEV---------WDVIREI 241 (369)
Q Consensus 187 ~~il~~l~~~--------------~-~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdvw~~~~---------w~~l~~~ 241 (369)
+.+...+... . .......+...+...+.+.+.. ++++|||||++.... +..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 7666655430 0 0000012556666677666653 389999999976332 2333322
Q ss_pred cCCCCCCceEEEEecchh
Q 046471 242 VPDNQNGCGVLITLIEID 259 (369)
Q Consensus 242 l~~~~~gs~IivTTr~~~ 259 (369)
... ..+.++|+|++...
T Consensus 159 ~~~-~~~~~~il~g~~~~ 175 (350)
T 2qen_A 159 YDS-LPNLKIILTGSEVG 175 (350)
T ss_dssp HHH-CTTEEEEEEESSHH
T ss_pred HHh-cCCeEEEEECCcHH
Confidence 222 24788999987653
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.89 E-value=0.0042 Score=57.83 Aligned_cols=130 Identities=12% Similarity=0.081 Sum_probs=81.3
Q ss_pred CCccccchHHHHHHHHHHhc-----CCCCcEEee--------hHHHHhcCcCccccc------cceEEEecCCCCCcChH
Q 046471 123 NSGMVGLEDRMEKLLDILKE-----GPPQLSVVA--------FAAEAYSNSDVKHYF------NCHAWVPEPYNYDADDD 183 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~-----~~~~~~vi~--------LA~~vy~~~~v~~~F------~~~~wv~vs~~~~~~~~ 183 (369)
+..++||+.+++.+..+|.. ....+-+.| ||+.+++ .....+ -..+|+..+...+...
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 94 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYR- 94 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHH-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHH-
Confidence 36799999999999998843 223455555 8888887 332211 1356777777777777
Q ss_pred HHHHHHHHHhCcCCccccccccHHHHHHHHHHhc--CCceEEEEEeCCCCch----hHHHhhhhc---CCC--CCCceEE
Q 046471 184 QILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYL--MIKRYLIVVDDVWRIE----VWDVIREIV---PDN--QNGCGVL 252 (369)
Q Consensus 184 ~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdvw~~~----~w~~l~~~l---~~~--~~gs~Ii 252 (369)
++..++.+++...... ..+...+...+.+.+ .+++.+||||++..-. ..+.+...+ ... ..+..+|
T Consensus 95 -~~~~l~~~l~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 95 -VASAIAEAVGVRVPFT--GLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp -HHHHHHHHHSCCCCSS--CCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred -HHHHHHHHhCCCCCCC--CCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 9999999996643211 124566666777776 4568999999997542 222232222 111 3456778
Q ss_pred EEecch
Q 046471 253 ITLIEI 258 (369)
Q Consensus 253 vTTr~~ 258 (369)
.||+..
T Consensus 172 ~~t~~~ 177 (387)
T 2v1u_A 172 GITNSL 177 (387)
T ss_dssp EECSCS
T ss_pred EEECCC
Confidence 888765
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.78 E-value=0.0076 Score=56.21 Aligned_cols=130 Identities=10% Similarity=0.050 Sum_probs=83.8
Q ss_pred CccccchHHHHHHHHHHhc----CCC---CcEEee--------hHHHHhcCcCccccc-cceEEEecCCCCCcChHHHHH
Q 046471 124 SGMVGLEDRMEKLLDILKE----GPP---QLSVVA--------FAAEAYSNSDVKHYF-NCHAWVPEPYNYDADDDQILD 187 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~----~~~---~~~vi~--------LA~~vy~~~~v~~~F-~~~~wv~vs~~~~~~~~~il~ 187 (369)
..++||+.+++.+..++.. ..+ .+.+.| ||+.+.+ ...... -..+|+..+...+... ++.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~--~~~ 92 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTA--IIG 92 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHH--HHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHH--HHH
Confidence 6799999999999998875 222 355555 8888877 332221 2356777677666777 999
Q ss_pred HHHHHhCcCCccccccccHHHHHHHHHHhcC--CceEEEEEeCCCCc--hhHHHhhhhcCCCC----CCceEEEEecchh
Q 046471 188 MIMKFLMPSSRLSIIKDKNYEMKKKIQQYLM--IKRYLIVVDDVWRI--EVWDVIREIVPDNQ----NGCGVLITLIEID 259 (369)
Q Consensus 188 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~~--~~w~~l~~~l~~~~----~gs~IivTTr~~~ 259 (369)
.++..++...... ..+...+...+.+.+. +++.+||||++... .....+...+.... .+..||+||+...
T Consensus 93 ~l~~~l~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 93 EIARSLNIPFPRR--GLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHTTCCCCSS--CCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHhCccCCCC--CCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 9999886542211 1245556666666653 56899999999764 44555554443211 3667888877653
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.76 E-value=0.0014 Score=61.33 Aligned_cols=131 Identities=13% Similarity=-0.012 Sum_probs=81.9
Q ss_pred CccccchHHHHHHHHHHhc---CC--CCcEEee--------hHHHHhcCcCcccc--------ccceEEEecCCCC-CcC
Q 046471 124 SGMVGLEDRMEKLLDILKE---GP--PQLSVVA--------FAAEAYSNSDVKHY--------FNCHAWVPEPYNY-DAD 181 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~---~~--~~~~vi~--------LA~~vy~~~~v~~~--------F~~~~wv~vs~~~-~~~ 181 (369)
..++||+.+++.+.++|.. +. ..+-+.| ||+.+++ ..... ....+|+..+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988764 22 2344555 8888887 33221 1235677666555 667
Q ss_pred hHHHHHHHHHHhCcCCccccccccHHHHHHHHHHhcCCceEEEEEeCCCCchh--HHHh-hhhcCCCCCCceEEEEecch
Q 046471 182 DDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEV--WDVI-REIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 182 ~~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~--w~~l-~~~l~~~~~gs~IivTTr~~ 258 (369)
. ++..++.++....... ...+...+...+.+.+..++.+|||||++.-.. +..+ ...+.....+..+|+||+..
T Consensus 98 ~--~~~~l~~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 98 A--VLSSLAGKLTGFSVPK-HGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp H--HHHHHHHHHHCSCCCS-SSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred H--HHHHHHHHhcCCCCCC-CCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 7 8899998884322111 112445667778888887777999999975321 1122 22222111578899999875
Q ss_pred h
Q 046471 259 D 259 (369)
Q Consensus 259 ~ 259 (369)
.
T Consensus 175 ~ 175 (384)
T 2qby_B 175 N 175 (384)
T ss_dssp T
T ss_pred c
Confidence 3
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.64 E-value=0.0027 Score=59.16 Aligned_cols=132 Identities=12% Similarity=0.154 Sum_probs=80.9
Q ss_pred CCccccchHHHHHHHHHHhc---C-C-CCcEEee--------hHHHHhcCcCcccccc---ceEEEecCCCCCcChHHHH
Q 046471 123 NSGMVGLEDRMEKLLDILKE---G-P-PQLSVVA--------FAAEAYSNSDVKHYFN---CHAWVPEPYNYDADDDQIL 186 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~---~-~-~~~~vi~--------LA~~vy~~~~v~~~F~---~~~wv~vs~~~~~~~~~il 186 (369)
+..++||+.+++.+.+++.. . . ..+.+.| ||+.+++ .....|. ..+|+..+...+... ++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~--~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYR--VL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHH--HH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHH--HH
Confidence 46799999999999998874 2 2 3455666 8888887 4433331 356676655556666 88
Q ss_pred HHHHHHhCcCCccccccccHHHHHHHHHHhcC--CceEEEEEeCCCCc------hhHHHhhhhcCC-CCCCceEEEEecc
Q 046471 187 DMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLM--IKRYLIVVDDVWRI------EVWDVIREIVPD-NQNGCGVLITLIE 257 (369)
Q Consensus 187 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdvw~~------~~w~~l~~~l~~-~~~gs~IivTTr~ 257 (369)
..++.+++...... ..+...+...+.+.+. +++.+||||+++.. +.+..+...+.. ...+..+|+||+.
T Consensus 95 ~~i~~~l~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 95 ADLLESLDVKVPFT--GLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHTTTTSCCCCSS--SCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHhCCCCCCC--CCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 88888775532211 1245555566666654 45899999998652 333344333321 2335667888876
Q ss_pred hhh
Q 046471 258 IDI 260 (369)
Q Consensus 258 ~~v 260 (369)
...
T Consensus 173 ~~~ 175 (386)
T 2qby_A 173 VKF 175 (386)
T ss_dssp GGG
T ss_pred CCh
Confidence 543
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.40 E-value=0.0081 Score=55.13 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=71.1
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCcEEee--------hHHHHhcCcCccccccceEEEecCCC-----CCcChHHHHHH
Q 046471 122 KNSGMVGLEDRMEKLLDILKEGPPQLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYN-----YDADDDQILDM 188 (369)
Q Consensus 122 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~-----~~~~~~~il~~ 188 (369)
.+..++||+.+.+.|.+ +.. ..+.|.| |++.+.+. ... ..+|+..... .+... ++..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~--~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~--~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA--PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKD--FLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS--SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHH--HHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC--CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHH--HHHH
Confidence 45679999999999999 654 3334444 88888873 222 2477776542 23334 4444
Q ss_pred HHHHhCc-------------CC-----cc---cc-----ccccHHHHHHHHHHhcCCceEEEEEeCCCCc-----hhHHH
Q 046471 189 IMKFLMP-------------SS-----RL---SI-----IKDKNYEMKKKIQQYLMIKRYLIVVDDVWRI-----EVWDV 237 (369)
Q Consensus 189 il~~l~~-------------~~-----~~---~~-----~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~-----~~w~~ 237 (369)
+...+.. .. .. .. .......+...+.+.-+ ++++|||||+... ..|-.
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 4443311 00 00 00 01245556666665443 4999999999652 22322
Q ss_pred hhhhcCCCCCCceEEEEecchh
Q 046471 238 IREIVPDNQNGCGVLITLIEID 259 (369)
Q Consensus 238 l~~~l~~~~~gs~IivTTr~~~ 259 (369)
+...+.....+.++|+|++...
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~ 181 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMG 181 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHH
T ss_pred HHHHHHHcCCCeEEEEEcCchH
Confidence 2222222224678999998754
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.16 E-value=0.14 Score=42.87 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=63.6
Q ss_pred CCccccchHHHHHHHHHHhcCCC-CcEEee--------hHHHHhcCcCcccc-ccc-eEEEecCCCCCcChHHHHHHHHH
Q 046471 123 NSGMVGLEDRMEKLLDILKEGPP-QLSVVA--------FAAEAYSNSDVKHY-FNC-HAWVPEPYNYDADDDQILDMIMK 191 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~~~-~~~vi~--------LA~~vy~~~~v~~~-F~~-~~wv~vs~~~~~~~~~il~~il~ 191 (369)
..+++|++..++.+.+++..... .+-+.| ||+.+.+ ..... +.. .+.+..+....... +...+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 90 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDV---VRHKIK 90 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHH---HHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHH---HHHHHH
Confidence 34689999999999999987643 455555 7777766 32222 221 22233332222221 222222
Q ss_pred HhCcCCccccccccHHHHHHHHHHhcCCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecch
Q 046471 192 FLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
.+.... ..-.+++.+||+||+... ..++.+...+.....+.++|+||+..
T Consensus 91 ~~~~~~-----------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 91 EFARTA-----------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp HHHTSC-----------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHhccc-----------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 111100 011357889999999764 44556665555445678888888754
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.54 E-value=0.13 Score=43.69 Aligned_cols=41 Identities=7% Similarity=0.137 Sum_probs=30.3
Q ss_pred CCceEEEEEeCCCC--chhHHHhhhhcCCCCCCceEEEEecch
Q 046471 218 MIKRYLIVVDDVWR--IEVWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 218 ~~kr~LlVLDdvw~--~~~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
.+++.+||+||++. ...++.+...+.....+..+|+||+..
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 45789999999965 356777776665555678889888754
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.28 E-value=0.64 Score=41.59 Aligned_cols=113 Identities=13% Similarity=0.173 Sum_probs=63.6
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee--------hHHHHhcCcCccc-ccc-ceEEEecCCCCCcChHHHHHHHHHH
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA--------FAAEAYSNSDVKH-YFN-CHAWVPEPYNYDADDDQILDMIMKF 192 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~--------LA~~vy~~~~v~~-~F~-~~~wv~vs~~~~~~~~~il~~il~~ 192 (369)
.+++|++..++.+.+++..+. +.+-+.| +|+.+.+ .... .+. ..+++..+..... . .+++++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~-~--~i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGI-D--VVRNQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSH-H--HHHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccCh-H--HHHHHHHH
Confidence 568999999999999998765 3344445 6766665 2211 121 1333333322221 2 23333332
Q ss_pred hCcCCccccccccHHHHHHHHHHhc-CCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecch
Q 046471 193 LMPSSRLSIIKDKNYEMKKKIQQYL-MIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
+.... ..+ .+++.+||+||++.- ..++.+...+.....++++|+||+..
T Consensus 96 ~~~~~-----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 96 FAQKK-----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp HHHBC-----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred HHhcc-----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 22100 012 456899999999763 45566666555445678888888653
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.64 E-value=1.3 Score=39.52 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=28.6
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecch
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
+++.+||+|++..- +.++.+...+.....++++|+||...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 56889999999754 45666666665445678888888654
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.79 E-value=0.93 Score=36.64 Aligned_cols=36 Identities=6% Similarity=0.242 Sum_probs=26.1
Q ss_pred CCccccchHHHHHHHHHHhcCC-CCcEEee--------hHHHHhc
Q 046471 123 NSGMVGLEDRMEKLLDILKEGP-PQLSVVA--------FAAEAYS 158 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~--------LA~~vy~ 158 (369)
-.+++|+++.++.+.+.+.... ..+-+.| ||+.+.+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999987654 3344555 6666665
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=82.40 E-value=4.8 Score=36.32 Aligned_cols=101 Identities=6% Similarity=0.029 Sum_probs=60.0
Q ss_pred ccccchHHHHHHHHHHhc----CC-CCcEEee--------hHHHHhcCcCccc--------cccceEEEecCCCCCcChH
Q 046471 125 GMVGLEDRMEKLLDILKE----GP-PQLSVVA--------FAAEAYSNSDVKH--------YFNCHAWVPEPYNYDADDD 183 (369)
Q Consensus 125 ~~vGr~~~~~~l~~~L~~----~~-~~~~vi~--------LA~~vy~~~~v~~--------~F~~~~wv~vs~~~~~~~~ 183 (369)
-+.||+++++.|...|.. +. ..+-+.| +|+.|.+. ... .| ..+.|....-.+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~-~~v~INc~~~~t~~~- 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIF-DYIHIDALELAGMDA- 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCE-EEEEEETTCCC--HH-
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCce-EEEEEeccccCCHHH-
Confidence 378999999999887754 22 2344445 77777663 211 12 244555455556667
Q ss_pred HHHHHHHHHhCcCCccccccccHHHHHHHHHHh--cCCceEEEEEeCCCCc
Q 046471 184 QILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQY--LMIKRYLIVVDDVWRI 232 (369)
Q Consensus 184 ~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDdvw~~ 232 (369)
+...|++++.+..... ......+...+... -.++.++++||.+..-
T Consensus 97 -~~~~I~~~L~g~~~~~--~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 97 -LYEKIWFAISKENLCG--DISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp -HHHHHHHHHSCCC--C--CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred -HHHHHHHHhcCCCCCc--hHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 9999999997652211 11334444444432 2457899999998654
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=77.24 E-value=10 Score=33.42 Aligned_cols=40 Identities=10% Similarity=0.215 Sum_probs=28.0
Q ss_pred CceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecch
Q 046471 219 IKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 219 ~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
+++.++|+|++..- ...+.+...+.....++++|+||...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 56789999998653 45566766665555677888887654
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=75.92 E-value=28 Score=31.29 Aligned_cols=40 Identities=8% Similarity=0.205 Sum_probs=26.7
Q ss_pred CCceEEEEEeCCCCc--hhHHHhhhhcCCCCCCceEEEEecc
Q 046471 218 MIKRYLIVVDDVWRI--EVWDVIREIVPDNQNGCGVLITLIE 257 (369)
Q Consensus 218 ~~kr~LlVLDdvw~~--~~w~~l~~~l~~~~~gs~IivTTr~ 257 (369)
.+++.+||+||+..- ..++.+...+.....+..+|++|..
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 356789999998643 4566666666544456777777754
No 21
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=75.07 E-value=22 Score=27.32 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=25.5
Q ss_pred ccccchHHHHHHHHHHhc---CCCCcEEee--------hHHHHhcC
Q 046471 125 GMVGLEDRMEKLLDILKE---GPPQLSVVA--------FAAEAYSN 159 (369)
Q Consensus 125 ~~vGr~~~~~~l~~~L~~---~~~~~~vi~--------LA~~vy~~ 159 (369)
+++|....+..+.+.+.. .+.++-+.| ||+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999888753 344566666 99999883
No 22
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=72.80 E-value=10 Score=33.70 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=59.4
Q ss_pred CCccccchHHHHHHHHHHhcCCC-CcEEee---------hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHHH
Q 046471 123 NSGMVGLEDRMEKLLDILKEGPP-QLSVVA---------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKF 192 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~~~-~~~vi~---------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~~ 192 (369)
-.+++|.+..++.+.+++..+.. ++-+++ +|+.+.+ ..... .+.+..+. .. .. .++.++..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~--~l~~~---~~~i~~~~-~~-~~--~i~~~~~~ 95 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCH--DVNAD---MMFVNGSD-CK-ID--FVRGPLTN 95 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHH--HTTEE---EEEEETTT-CC-HH--HHHTHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHH--HhCCC---EEEEcccc-cC-HH--HHHHHHHH
Confidence 35789999999999999986552 333443 7777766 32211 22333322 11 22 23332222
Q ss_pred hCcCCccccccccHHHHHHHHHHhcCCceEEEEEeCCCCch---hHHHhhhhcCCCCCCceEEEEecch
Q 046471 193 LMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIE---VWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~---~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
..... ...+++-+|++|++..-. ..+.+...+.....+.++|+||...
T Consensus 96 ~~~~~------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 96 FASAA------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNI 146 (324)
T ss_dssp HHHBC------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSG
T ss_pred HHhhc------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 11110 012478899999997543 4445554443323466788887643
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=65.77 E-value=17 Score=31.55 Aligned_cols=20 Identities=20% Similarity=0.561 Sum_probs=16.6
Q ss_pred CCCccccchHHHHHHHHHHh
Q 046471 122 KNSGMVGLEDRMEKLLDILK 141 (369)
Q Consensus 122 ~~~~~vGr~~~~~~l~~~L~ 141 (369)
.-.+++|.+..++.|.+.+.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~ 34 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVE 34 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTH
T ss_pred CHHHhcCHHHHHHHHHHHHH
Confidence 35679999999999988874
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=61.04 E-value=65 Score=27.08 Aligned_cols=18 Identities=6% Similarity=0.239 Sum_probs=14.1
Q ss_pred CCccccchHHHHHHHHHH
Q 046471 123 NSGMVGLEDRMEKLLDIL 140 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L 140 (369)
-.+++|.+..++.|.+++
T Consensus 5 ~~~i~G~~~~~~~l~~~~ 22 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFV 22 (262)
T ss_dssp TTSSCSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 457899999888887665
No 25
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=56.89 E-value=8.9 Score=31.41 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCC-----CCcEEee--------hHHHHhcCcCccccccceEEEecCCCCCcChHHHHHHHHHHhCcCC
Q 046471 131 DRMEKLLDILKEGP-----PQLSVVA--------FAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSS 197 (369)
Q Consensus 131 ~~~~~l~~~L~~~~-----~~~~vi~--------LA~~vy~~~~v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l~~~~ 197 (369)
..++.+.+++.... ..+-+.| ||+.+++ .........+|++.+ . +...+.......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~- 104 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------E--LFRELKHSLQDQ- 104 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------H--HHHHHHHC---C-
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------H--HHHHHHHHhccc-
Confidence 34556666665442 3344555 8888887 333333345555443 4 555554433221
Q ss_pred ccccccccHHHHHHHHHHhcCCceEEEEEeCCCCc--hhHHH--hhh-hcCCC-CCCceEEEEec
Q 046471 198 RLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRI--EVWDV--IRE-IVPDN-QNGCGVLITLI 256 (369)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~--~~w~~--l~~-~l~~~-~~gs~IivTTr 256 (369)
+.......+.+ .-+|||||++.. ..|.. +.. .+... ..+.++|+||.
T Consensus 105 -------~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn 157 (202)
T 2w58_A 105 -------TMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSN 157 (202)
T ss_dssp -------CCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEES
T ss_pred -------hHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 22223333332 138999999653 33321 221 22111 23567888886
No 26
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=53.83 E-value=25 Score=27.03 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=24.3
Q ss_pred CccccchHHHHHHHHHHhc---CCCCcEEee--------hHHHHhcC
Q 046471 124 SGMVGLEDRMEKLLDILKE---GPPQLSVVA--------FAAEAYSN 159 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~--------LA~~vy~~ 159 (369)
-+++|.+..+.++.+.+.. ...++-+.| +|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 3578999998888887653 345666766 99999883
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=51.62 E-value=27 Score=30.58 Aligned_cols=37 Identities=11% Similarity=0.293 Sum_probs=24.3
Q ss_pred EEEEEeCCC-----------CchhHHHhhhhcCCCCCCceEEEEecch
Q 046471 222 YLIVVDDVW-----------RIEVWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 222 ~LlVLDdvw-----------~~~~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
.+|+||++. .....+.+...+.....+..||.||...
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 489999997 2344455665555555567788887644
No 28
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics, PSI-biology, protein ST initiative, structural genomics; NMR {Jannaschia SP}
Probab=49.46 E-value=9.9 Score=26.87 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=32.2
Q ss_pred chHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeecc
Q 046471 311 STKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEA 352 (369)
Q Consensus 311 ~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~~ 352 (369)
.|++|+-+|.|+-+=-. .+.++.|-.+++...|-++.+.+
T Consensus 9 RRNklLglWAAe~lGlt--g~~aeaYa~~vv~adfee~gded 48 (85)
T 2kzc_A 9 RRNKLMGLWVAEVLGKS--GDEANAYAAEVVKADFEEAGHED 48 (85)
T ss_dssp HHHHHHHHHHHHHHTCC--HHHHHHHHHHGGGSSSSSSSSSH
T ss_pred HHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHhcccCCHHH
Confidence 68999999999754322 68999999999999998875543
No 29
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=44.30 E-value=25 Score=32.18 Aligned_cols=68 Identities=15% Similarity=0.007 Sum_probs=45.5
Q ss_pred hHhhhcCCchhhHHHHhhhhcCC--CCceechHHHHHHHH--H---cCCCCCCcHHHHHHHHHHHHhCCCceeeec
Q 046471 283 QVVAYCMLPFYLKLCCLYLSVFP--VHFEISTKQLYQSWI--A---EGFITDNNEATAEKYLEQLINGGFVILIEE 351 (369)
Q Consensus 283 l~~sy~~L~~~lk~cfly~s~fP--~~~~i~~~~Li~~W~--a---eg~i~~~~e~~~~~~~~~L~~r~ll~~~~~ 351 (369)
+.-++..||.+.+.++..++.+. .+..++...+...|. + .|. .+........++++|+..+||.....
T Consensus 299 ~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~~ 373 (412)
T 1w5s_A 299 QTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKPS 373 (412)
T ss_dssp -CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeecc
Confidence 44567889999999998888654 334566666665552 2 122 11115667789999999999987644
No 30
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=43.87 E-value=24 Score=29.28 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCc-eEEEEEeCCCCc-----hhHHHhhhhcCCCCCCceEEEEecch
Q 046471 208 EMKKKIQQYLMIK-RYLIVVDDVWRI-----EVWDVIREIVPDNQNGCGVLITLIEI 258 (369)
Q Consensus 208 ~~~~~l~~~L~~k-r~LlVLDdvw~~-----~~w~~l~~~l~~~~~gs~IivTTr~~ 258 (369)
.....+++.+.+. ==|||||++-.. -..+.+...+..-....-||+|+|+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 3445566667554 459999998432 23344544444444567899999975
No 31
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=40.30 E-value=58 Score=28.49 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=26.2
Q ss_pred CCccccchHHHHHHHHHHhc------CCCCcEEee--------hHHHHhc
Q 046471 123 NSGMVGLEDRMEKLLDILKE------GPPQLSVVA--------FAAEAYS 158 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~------~~~~~~vi~--------LA~~vy~ 158 (369)
-.+++|++..++.+..++.. ....+-+.| ||+.+++
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 35799999999998888752 223555666 8888877
No 32
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=37.08 E-value=17 Score=27.88 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhhHhhhhhhccCcccCchHHHHHHHHH---H----Hhccccchhhh
Q 046471 5 FRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPW---L----RDYEYDMSWLL 56 (369)
Q Consensus 5 ~~~~l~~L~~~L~~i~~~L~~a~~~~~~~~~~~~~~w~~~---L----rdlayd~eD~l 56 (369)
-...++..+..|..+...+++.+..... -|..| | ++..||+=|.+
T Consensus 28 aqkkfeeyqnklanlskiirenegnevs-------pwqewenglrqiykemiydafdal 79 (213)
T 3nku_A 28 AQKKFEEYQNKLANLSKIIRENEGNEVS-------PWQEWENGLRQIYKEMIYDAFDAL 79 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGCSC-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHhccCCcCC-------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677788888888888877765433 36655 4 46677766655
No 33
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=36.89 E-value=21 Score=18.49 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=14.6
Q ss_pred hcCCCCCCceEEEEecchh
Q 046471 241 IVPDNQNGCGVLITLIEID 259 (369)
Q Consensus 241 ~l~~~~~gs~IivTTr~~~ 259 (369)
++|.-..|+.++|||...+
T Consensus 3 PlPa~eeGaT~lVtTKT~d 21 (26)
T 2gkw_B 3 PVPATELGSTELVTTKTAG 21 (26)
T ss_pred cccccccCceEEEEeccCC
Confidence 5666677999999997543
No 34
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=31.35 E-value=4e+02 Score=26.49 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=21.9
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA 151 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~ 151 (369)
.+++|++.+++.+++.|.... .++-++|
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G 214 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVG 214 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEEC
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEc
Confidence 468999999999999998654 3455666
No 35
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=31.08 E-value=2.4e+02 Score=25.43 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCCccccchHHHHHHHHHH
Q 046471 122 KNSGMVGLEDRMEKLLDIL 140 (369)
Q Consensus 122 ~~~~~vGr~~~~~~l~~~L 140 (369)
.-.+++|.+..++.|.+++
T Consensus 113 ~~~~iiG~~~~~~~l~~~~ 131 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIV 131 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHT
T ss_pred ChHHhCCHHHHHHHHHHHH
Confidence 3467999999999999887
No 36
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.93 E-value=79 Score=27.93 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=26.3
Q ss_pred CCccccchHHHHHHHHHHhcCC-CCcEEee--------hHHHHhc
Q 046471 123 NSGMVGLEDRMEKLLDILKEGP-PQLSVVA--------FAAEAYS 158 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~--------LA~~vy~ 158 (369)
-.+++|.++.++.+..++..+. ..+-+.| ||+.+.+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999987664 3455555 6666655
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=30.47 E-value=2.3e+02 Score=24.78 Aligned_cols=19 Identities=32% Similarity=0.400 Sum_probs=16.0
Q ss_pred CCCccccchHHHHHHHHHH
Q 046471 122 KNSGMVGLEDRMEKLLDIL 140 (369)
Q Consensus 122 ~~~~~vGr~~~~~~l~~~L 140 (369)
.-.+++|.+..++.|.+.+
T Consensus 16 ~~~di~G~~~~~~~l~~~i 34 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAV 34 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHT
T ss_pred CHHHhcChHHHHHHHHHHH
Confidence 3467999999999999887
No 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=30.27 E-value=2e+02 Score=26.72 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=16.1
Q ss_pred CCCCccccchHHHHHHHHHH
Q 046471 121 SKNSGMVGLEDRMEKLLDIL 140 (369)
Q Consensus 121 ~~~~~~vGr~~~~~~l~~~L 140 (369)
..-.+++|.+..++.|.+.+
T Consensus 131 ~~~~di~G~~~~k~~l~~~v 150 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAV 150 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHH
Confidence 33467899999999998877
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=28.74 E-value=1.5e+02 Score=26.59 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=15.7
Q ss_pred CCccccchHHHHHHHHHHh
Q 046471 123 NSGMVGLEDRMEKLLDILK 141 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~ 141 (369)
-.+++|.+..++.|.+.+.
T Consensus 83 ~~~i~G~~~~~~~l~~~i~ 101 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVV 101 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTH
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 4568999999999988874
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=28.55 E-value=3e+02 Score=24.10 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=15.9
Q ss_pred CCCccccchHHHHHHHHHHh
Q 046471 122 KNSGMVGLEDRMEKLLDILK 141 (369)
Q Consensus 122 ~~~~~vGr~~~~~~l~~~L~ 141 (369)
.-.+++|.++.++.|.+.+.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~ 29 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVI 29 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHH
Confidence 34578999999999888763
No 41
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=27.24 E-value=50 Score=25.02 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHHhhHhhhhhhccCcccCchHHHHHHHHHHHhccccchhhhh
Q 046471 3 ITFRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLL 57 (369)
Q Consensus 3 ~~~~~~l~~L~~~L~~i~~~L~~a~~~~~~~~~~~~~~w~~~Lrdlayd~eD~ld 57 (369)
+++...++.++.+|..++.++.-.....-.++...+..|..-=|++++++-+.+-
T Consensus 10 ~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~ 64 (122)
T 3viq_A 10 LKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMA 64 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888899988888877666655566777778888878888886665553
No 42
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.71 E-value=1.4e+02 Score=28.34 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=17.4
Q ss_pred CCccccchHHHHHHHHHHhc
Q 046471 123 NSGMVGLEDRMEKLLDILKE 142 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~~ 142 (369)
-.+++|++..++.+.++|..
T Consensus 38 ~~dliG~~~~~~~L~~~l~~ 57 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLAN 57 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 35799999999999999875
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=26.25 E-value=8.1 Score=34.32 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=18.8
Q ss_pred HHHcCCCCCCc-----HHHHHHHHH-HHHhCCCcee
Q 046471 319 WIAEGFITDNN-----EATAEKYLE-QLINGGFVIL 348 (369)
Q Consensus 319 W~aeg~i~~~~-----e~~~~~~~~-~L~~r~ll~~ 348 (369)
-+..||+.... .+.|..||+ ++++|+||||
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 45678886443 899999998 9999999986
No 44
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=23.58 E-value=26 Score=20.61 Aligned_cols=9 Identities=22% Similarity=0.866 Sum_probs=4.7
Q ss_pred hcCCCCcee
Q 046471 302 SVFPVHFEI 310 (369)
Q Consensus 302 s~fP~~~~i 310 (369)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 355555554
No 45
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=22.96 E-value=3.6e+02 Score=27.44 Aligned_cols=28 Identities=11% Similarity=0.385 Sum_probs=23.0
Q ss_pred CccccchHHHHHHHHHHhcCC-CCcEEee
Q 046471 124 SGMVGLEDRMEKLLDILKEGP-PQLSVVA 151 (369)
Q Consensus 124 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~ 151 (369)
.+++|+++++..+++.|.... .++-++|
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G 198 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIG 198 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEE
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEc
Confidence 468999999999999998754 4677777
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=22.81 E-value=2.5e+02 Score=24.99 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=16.0
Q ss_pred CCCccccchHHHHHHHHHHh
Q 046471 122 KNSGMVGLEDRMEKLLDILK 141 (369)
Q Consensus 122 ~~~~~vGr~~~~~~l~~~L~ 141 (369)
.-.+++|.+..++.|.+.+.
T Consensus 49 ~~~di~G~~~~~~~l~~~v~ 68 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVI 68 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTH
T ss_pred CHHHhCCHHHHHHHHHHHHH
Confidence 34579999999999988763
No 47
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=22.72 E-value=32 Score=27.37 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCC--chhHH--HhhhhcCC-CCCCceEEEEecch
Q 046471 220 KRYLIVVDDVWR--IEVWD--VIREIVPD-NQNGCGVLITLIEI 258 (369)
Q Consensus 220 kr~LlVLDdvw~--~~~w~--~l~~~l~~-~~~gs~IivTTr~~ 258 (369)
+.-+|||||+.. .+.|. .+...+.. ...|..||+||...
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 345899999984 34443 22222221 12477888888643
No 48
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=22.28 E-value=2e+02 Score=24.89 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.5
Q ss_pred CCccccchHHHHHHHHHHh
Q 046471 123 NSGMVGLEDRMEKLLDILK 141 (369)
Q Consensus 123 ~~~~vGr~~~~~~l~~~L~ 141 (369)
-.+++|.+..++.|.+.+.
T Consensus 14 ~~di~G~~~~~~~l~~~v~ 32 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQ 32 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4569999999999888764
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=21.84 E-value=1.5e+02 Score=27.48 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=25.6
Q ss_pred HHhcCCceEEEEEeCCCCch----hHHHhhhhcCC-CCCCceEEEEecc
Q 046471 214 QQYLMIKRYLIVVDDVWRIE----VWDVIREIVPD-NQNGCGVLITLIE 257 (369)
Q Consensus 214 ~~~L~~kr~LlVLDdvw~~~----~w~~l~~~l~~-~~~gs~IivTTr~ 257 (369)
.+.+..+.-+|+|||+..-. ..+.+...+.. ...|..||+||.+
T Consensus 188 ~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 188 REKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34444456789999996432 22334433321 1347789998875
No 50
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=21.05 E-value=1.4e+02 Score=22.05 Aligned_cols=39 Identities=5% Similarity=0.170 Sum_probs=31.3
Q ss_pred chHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhCCCceeeec
Q 046471 311 STKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEE 351 (369)
Q Consensus 311 ~~~~Li~~W~aeg~i~~~~e~~~~~~~~~L~~r~ll~~~~~ 351 (369)
.-..||.+-+..+.+.. .+.|..+-+.|++.++|+++..
T Consensus 39 ~GselVdWLi~~~~~~~--R~EAv~lgq~Ll~~G~i~hV~d 77 (109)
T 1uhw_A 39 TGSGVIDWLVSNKLVRN--RQEGLMISASLLSEGYLQPAGD 77 (109)
T ss_dssp CHHHHHHHHHHHTSSSS--HHHHHHHHHHHHHHTSSEECSS
T ss_pred cchHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCeEEeCcc
Confidence 35567877677676655 7899999999999999999854
Done!