BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046473
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M339|RS32_ARATH 40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1
SV=1
Length = 249
Score = 182 bits (463), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/110 (80%), Positives = 95/110 (86%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
S VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLR + L + + ACYGVLRF+MESG
Sbjct: 71 SLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEVIVSGKLRA RA SMKFKDGYM+SSG P KEYIDSAVRHVL RQ
Sbjct: 131 AKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180
>sp|Q9SIP7|RS31_ARATH 40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=1
SV=1
Length = 250
Score = 182 bits (461), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 88/109 (80%), Positives = 95/109 (87%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
S VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLR + L + + ACYGVLRF+MESG
Sbjct: 71 SLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQ 109
AKGCEVIVSGKLRA RA SMKFKDGYM+SSG P KEYID+AVRHVL RQ
Sbjct: 131 AKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQ 179
>sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1
SV=1
Length = 248
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 95/109 (87%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
S VQKRFKFP++SVELYAEKV NRGLCAIAQAESLR + L + + ACYGVLRF+MESG
Sbjct: 71 SLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQ 109
AKGCEVIVSGKLRA RA SMKFKDGYM+SSG P KEYID+AVRHVL RQ
Sbjct: 131 AKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQ 179
>sp|P62909|RS3_RAT 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=1 SV=1
Length = 243
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 88/110 (80%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FPE SVELYAEKV RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|P62908|RS3_MOUSE 40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1
Length = 243
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 88/110 (80%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FPE SVELYAEKV RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|E2RH47|RS3_CANFA 40S ribosomal protein S3 OS=Canis familiaris GN=RPS3 PE=1 SV=1
Length = 243
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 88/110 (80%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FPE SVELYAEKV RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|Q0Z8U2|RS3_PIG 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1
Length = 243
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 88/110 (80%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FPE SVELYAEKV RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2
Length = 243
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 88/110 (80%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FPE SVELYAEKV RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|Q3T169|RS3_BOVIN 40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1
Length = 243
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 88/110 (80%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FPE SVELYAEKV RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|P47835|RS32_XENLA 40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-b PE=2 SV=1
Length = 246
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 88/110 (80%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FPE SVELYAEKV RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|P02350|RS31_XENLA 40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-a PE=2 SV=2
Length = 246
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 88/110 (80%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FPE SVELYAEKV RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|P79891|RS3_AMBME 40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1
Length = 253
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/110 (72%), Positives = 88/110 (80%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FPE SVELYAEKV RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
+KGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 SKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|Q5R465|RS3_PONAB 40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1
Length = 243
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/110 (72%), Positives = 88/110 (80%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FPE SVELYAE+V RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1
Length = 245
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/110 (72%), Positives = 87/110 (79%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ VQKRF FP SVELYAEKV RGLCAIAQAESLR + L + + ACYGVLRFIMESG
Sbjct: 71 AVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
AKGCEV+VSGKLR QRA SMKF DG MI SG PV Y+D+AVRHVL RQ
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rps3 PE=1 SV=1
Length = 249
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 88/107 (82%)
Query: 3 VQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAK 62
VQKRFKF EN+VELYAEKV NRGLCA+AQ ESLR + LA + + A YGVLR++ME+GAK
Sbjct: 75 VQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAK 134
Query: 63 GCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQ 109
GCEV++SGKLRA RA SMKF DG+MI SG P ++IDSA RHVL RQ
Sbjct: 135 GCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQ 181
>sp|P48153|RS3_MANSE 40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1
Length = 243
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 86/110 (78%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
S VQKRF PE SVELYAEKV RGLCAIAQAESLR + + + + ACYGVLRFIMESG
Sbjct: 72 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 131
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
A+GCEV+VSGKLR QRA SMKF DG MI SG P +Y+++A RHVL RQ
Sbjct: 132 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG 181
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=3
SV=1
Length = 247
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 86/110 (78%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
S VQKRF F E SVELYAEKV+NRGLCA+AQ ESLR + + + + ACYGVLRFIMESG
Sbjct: 73 SVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESG 132
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
A+G EVIVSGKLR QRA +MKF DG MI SG+PV +YI AVRHV RQ
Sbjct: 133 AQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQG 182
>sp|Q06559|RS3_DROME 40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1
SV=1
Length = 246
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 82/108 (75%)
Query: 3 VQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAK 62
VQKRF F +ELYAEKV RGLCAIAQAESLR + + + ACYGVLR+IMESGAK
Sbjct: 75 VQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAK 134
Query: 63 GCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
GCEV+VSGKLR QRA SMKF DG MI SG P +Y+++A RHVL RQ
Sbjct: 135 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQG 182
>sp|P90526|RS3_DICDI 40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=1
SV=1
Length = 218
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 86/111 (77%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
S VQKRF F E +V L+AEK+ NRGLCA+AQAESL+ + LA + + ACY ++ IM G
Sbjct: 74 SLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAIVHQIMTRG 133
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQAS 111
AKGCEVIVSGKLRAQRA SMKF+DGYMI SG P K++ID A RHVL RQ +
Sbjct: 134 AKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLRQGT 184
>sp|P05750|RS3_YEAST 40S ribosomal protein S3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS3 PE=1 SV=5
Length = 240
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 85/107 (79%)
Query: 3 VQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAK 62
VQKRFK+ ++ LYAE+V +RGL A+AQAES++ + L + + A YGV+R++MESGAK
Sbjct: 73 VQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAK 132
Query: 63 GCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQ 109
GCEV+VSGKLRA RA +MKF DG++I SG PV ++ID+A RHVL RQ
Sbjct: 133 GCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQ 179
>sp|Q8SQM3|RS3_ENCCU 40S ribosomal protein S3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS3 PE=1 SV=1
Length = 228
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 69/106 (65%)
Query: 5 KRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGC 64
+R + P+ SVE+ EKV+ +GLCA+ QA +R++ L + + A L+ + A+GC
Sbjct: 86 QRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGC 145
Query: 65 EVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXRQA 110
++IVSGKL+ QRA S+KF+DG +I SG VK+YI++ V +Q
Sbjct: 146 QIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQG 191
>sp|Q8PV44|RS3_METMA 30S ribosomal protein S3 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps3 PE=3 SV=1
Length = 307
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 15 ELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRA 74
EL A+ + +R +I + RK G + +R +M +GA GCEV++SGKL
Sbjct: 89 ELNAQMMASRLAASIERGWYFRKAG----------HNTIRAVMNAGALGCEVVISGKLTG 138
Query: 75 QRATSMKFKDGYMISSGYPVKEYIDSA 101
R+ KF DGY+ SG+PV+E +D
Sbjct: 139 ARSRVEKFVDGYIKHSGHPVEEVVDEG 165
>sp|Q2FT39|RS3_METHJ 30S ribosomal protein S3 OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps3 PE=3 SV=1
Length = 237
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%)
Query: 13 SVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKL 72
S ++ ++V+N L A AE L + A LR IM+SGA GCEV++SGKL
Sbjct: 77 SPQIEVQQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIMDSGALGCEVVISGKL 136
Query: 73 RAQRATSMKFKDGYMISSGYPVKEYID 99
R KF +GY+ SG PV +D
Sbjct: 137 TGARGRVQKFTEGYIKHSGDPVNTLVD 163
>sp|Q8TRU1|RS3_METAC 30S ribosomal protein S3 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps3 PE=3 SV=1
Length = 318
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 15 ELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRA 74
EL A+ + +R +I + RK G + LR +M +GA GCEV++SGKL
Sbjct: 89 ELNAQMMASRLAASIERGWYFRKAG----------HNTLRAVMNAGALGCEVVISGKLTG 138
Query: 75 QRATSMKFKDGYMISSGYPVKEYIDSA 101
R+ KF DGY+ SG PV+E +D
Sbjct: 139 ARSRVEKFVDGYIKHSGNPVEEVVDEG 165
>sp|A1RXG6|RS3_THEPD 30S ribosomal protein S3 OS=Thermofilum pendens (strain Hrk 5)
GN=rps3 PE=3 SV=2
Length = 202
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 53 LRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXR 108
L IM +GA+G E+++SGKL +QR + KF GY+ SG P +E +D A+ HVL +
Sbjct: 118 LNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLK 173
>sp|Q46GA1|RS3_METBF 30S ribosomal protein S3 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps3 PE=3 SV=1
Length = 311
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 15 ELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRA 74
EL A+ + +R +I + RK G + LR +M +GA GCEV++SGKL
Sbjct: 89 ELNAQMMASRLAASIERGWYFRKAG----------HNTLRAVMNAGALGCEVVISGKLTG 138
Query: 75 QRATSMKFKDGYMISSGYPVKEYIDS 100
R+ KF DGY+ SG PV E +D
Sbjct: 139 ARSRVEKFVDGYIKHSGNPVDEVVDE 164
>sp|A0B9W4|RS3_METTP 30S ribosomal protein S3 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps3 PE=3 SV=1
Length = 276
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 18/107 (16%)
Query: 3 VQKRFKF--PENSV------ELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLR 54
+++RF+ P+ V +L A V NR ++ RK G ++ LR
Sbjct: 69 LERRFRLDNPQIDVQDVGKSDLNARVVANRLASSLEHGWYFRKAGQSM----------LR 118
Query: 55 FIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSA 101
+M+SGA GCE+++SGKL R+ KF GY+ SG P +E +D+
Sbjct: 119 RVMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDTG 165
>sp|Q5JDH5|RS3_PYRKO 30S ribosomal protein S3 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps3 PE=3 SV=1
Length = 209
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 3 VQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAK 62
++K+F +E+ E++ N L A QA L + I + A Y +R IM +GA+
Sbjct: 69 LEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGAR 126
Query: 63 GCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYI 98
G E+ +SGKL +RA S++F GY+ G P + +
Sbjct: 127 GVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLV 162
>sp|A2SPK9|RS3_METLZ 30S ribosomal protein S3 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps3 PE=3 SV=1
Length = 231
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 14/90 (15%)
Query: 10 PENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVS 69
P + ++ AE++ N A+ + RK G +VI R +M+SGA GCEVI++
Sbjct: 88 PNLNAQIMAERLAN----ALERGWYFRKAGTSVI----------RRVMDSGALGCEVIIA 133
Query: 70 GKLRAQRATSMKFKDGYMISSGYPVKEYID 99
GKL RA KF +GY+ SG P + ++
Sbjct: 134 GKLTGARARVQKFVEGYIKHSGEPSESIVE 163
>sp|C5A280|RS3_THEGJ 30S ribosomal protein S3 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rps3 PE=3 SV=1
Length = 209
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 3 VQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAK 62
++++F +E+ E++ N L A QA L + I + A Y +R IM +GA+
Sbjct: 69 LERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGAR 126
Query: 63 GCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLXR 108
G E+ +SGKL +RA S++F GY+ G P + + L +
Sbjct: 127 GVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLK 172
>sp|A3CT03|RS3_METMJ 30S ribosomal protein S3 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps3 PE=3 SV=1
Length = 234
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 14/95 (14%)
Query: 5 KRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGC 64
++ + P + ++ AE++ N A+ + RK G + I R IMESGA GC
Sbjct: 83 QQVQNPNFNAQIMAERLAN----ALERGWYFRKAGSSTI----------RRIMESGALGC 128
Query: 65 EVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYID 99
EVIV+GKL R+ + KF +GY+ G P + ++
Sbjct: 129 EVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVE 163
>sp|Q6LXE7|RS3_METMP 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain S2 /
LL) GN=rps3 PE=3 SV=1
Length = 211
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 48 ACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLX 107
+ +R +M SGAKG +IVSGKL +R+ + KF DGYM G P + ++ + H L
Sbjct: 111 TAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS--HQLA 168
Query: 108 RQASSIFCGYVKI 120
+ I VKI
Sbjct: 169 KLKLGIVGVTVKI 181
>sp|A4FWB6|RS3_METM5 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rps3 PE=3 SV=1
Length = 211
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 48 ACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLX 107
+ +R +M SGAKG +IVSGKL +R+ + KF DGYM G P + ++ + H L
Sbjct: 111 TAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS--HQLA 168
Query: 108 RQASSIFCGYVKI 120
+ + VKI
Sbjct: 169 KLKLGVVGVTVKI 181
>sp|A7I5P5|RS3_METB6 30S ribosomal protein S3 OS=Methanoregula boonei (strain 6A8)
GN=rps3 PE=3 SV=1
Length = 231
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 13 SVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKL 72
S ++ ++V N A AE L + A ++R +M+SGA GCEV+++GKL
Sbjct: 77 SPQIEVQQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKL 136
Query: 73 RAQRATSMKFKDGYMISSGYP 93
RA + KF +GY+ G P
Sbjct: 137 TGARARTQKFTEGYIKHCGEP 157
>sp|A6VGZ0|RS3_METM7 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rps3 PE=3 SV=1
Length = 211
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 48 ACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLX 107
+ +R +M SGAKG +IVSGKL +R+ + KF DGYM G P + ++ + H L
Sbjct: 111 TAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS--HQLA 168
Query: 108 RQASSIFCGYVKI 120
+ + VKI
Sbjct: 169 KLKLGVVGVTVKI 181
>sp|P20281|RS3_HALMA 30S ribosomal protein S3 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps3 PE=3
SV=2
Length = 304
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 1 SAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESG 60
+ ++ RF + V++ ++V+ L A A+ L + A + + IMESG
Sbjct: 67 TELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESG 124
Query: 61 AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAV 102
A G E+++SGK+ R+ KF GY+ +G P +E +DS V
Sbjct: 125 ALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGV 166
>sp|Q0W1Y3|RS3_UNCMA 30S ribosomal protein S3 OS=Uncultured methanogenic archaeon RC-I
GN=rps3 PE=3 SV=1
Length = 279
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 5 KRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGC 64
+ K PE + ++ A ++ N A+ + RK G + L+ IM+SGA GC
Sbjct: 83 QEVKKPELNAQMMATRLAN----ALERGWYFRKAGQST----------LQRIMDSGAMGC 128
Query: 65 EVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYID 99
EVI++GKL R KF GY+ G PV+E +D
Sbjct: 129 EVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVD 163
>sp|O26116|RS3_METTH 30S ribosomal protein S3 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps3 PE=3 SV=1
Length = 258
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 49 CYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHV 105
Y +R IM +GA+G EV +SGK+R R+ + KF DGY+ G P +V+HV
Sbjct: 112 AYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEP-------SVKHV 161
>sp|Q4JB46|RS3_SULAC 30S ribosomal protein S3 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rps3 PE=3 SV=1
Length = 231
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 48 ACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAV 102
A + +R IM SGA G EVIVSGKL ++RA K K+G + SG +++ ID A+
Sbjct: 113 AAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAI 167
>sp|Q12ZU5|RS3_METBU 30S ribosomal protein S3 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps3 PE=3 SV=1
Length = 304
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 15 ELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRA 74
EL A+ + +R +I + RK G + +R +M +GA GCE+++SGKL
Sbjct: 89 ELNAQMMASRLASSIERGWYFRKAG----------HNTMRAVMNAGALGCEIVISGKLTG 138
Query: 75 QRATSMKFKDGYMISSGYPVKEYIDSA 101
R+ K +GY+ +G PV + +D
Sbjct: 139 SRSRVEKMVNGYIKHAGKPVDDIVDDG 165
>sp|A9A9Q9|RS3_METM6 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rps3 PE=3 SV=1
Length = 211
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 48 ACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHVLX 107
+ +R +M SGAKG +IVSGKL +R+ + KF DGYM G P + ++ + H L
Sbjct: 111 TAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS--HQLA 168
Query: 108 RQASSIFCGYVKI 120
+ + VKI
Sbjct: 169 KLKLGVVGVTVKI 181
>sp|A6UQ49|RS3_METVS 30S ribosomal protein S3 OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rps3 PE=3 SV=1
Length = 211
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 48 ACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYI 98
+ +R +M +GAKG +I+SGKL +R+ + KF DGYM G P +E +
Sbjct: 111 TAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELV 161
>sp|O59424|RS3_PYRHO 30S ribosomal protein S3 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps3 PE=3 SV=1
Length = 210
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 43 IVCKMACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAV 102
I + A Y +R IM +GA+G E+ +SGKL +RA S++F GY+ G P + +
Sbjct: 107 IHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGY 166
Query: 103 RHVLXR 108
L +
Sbjct: 167 AQALLK 172
>sp|P54034|RS3_METJA 30S ribosomal protein S3 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps3 PE=3 SV=1
Length = 208
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 50 YGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSA 101
+ +R +M +GAKG VI+SGKL +RA + KF GYM G P +E +D
Sbjct: 113 HTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKG 164
>sp|A8AA20|RS3_IGNH4 30S ribosomal protein S3 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rps3 PE=3 SV=1
Length = 241
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 46 KMACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVRHV 105
+ A Y LR IM +GA G +V VSGKLR +RA K+ G + SG V D A+ HV
Sbjct: 115 RRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHV 174
Query: 106 LXR 108
L +
Sbjct: 175 LLK 177
>sp|A6UWU3|RS3_META3 30S ribosomal protein S3 OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=rps3 PE=3 SV=1
Length = 208
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 49 CYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYID 99
+ +R +M GAKG VIVSGKL +R+ + K+ +GYM G P +E +D
Sbjct: 112 AHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVD 162
>sp|Q2NFW2|RS3_METST 30S ribosomal protein S3 OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rps3 PE=3 SV=1
Length = 252
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 49 CYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYI 98
Y ++R IM +GA+G EV +SGK+R R+ KF +GY+ G P +Y+
Sbjct: 112 AYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYV 161
>sp|O28360|RS3_ARCFU 30S ribosomal protein S3 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps3 PE=3 SV=1
Length = 229
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 46 KMACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYI 98
+ A Y L IME+GAKGCE+ +SGKL ++RA + KF G ++ +G P + +
Sbjct: 109 RRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMV 161
>sp|Q8TX35|RS3_METKA 30S ribosomal protein S3 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps3 PE=3 SV=1
Length = 227
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 43 IVCKMACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYI 98
I + A YG LR IM +GAKG +I+SGKL RA + KF +G + G P EY+
Sbjct: 115 IHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYM 170
>sp|Q9YF78|RS3_AERPE 30S ribosomal protein S3 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps3 PE=3
SV=1
Length = 246
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 4 QKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKG 63
Q F P + + E+ N L A QA + + I + + + IM +GA G
Sbjct: 72 QTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALG 129
Query: 64 CEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSA 101
E+ +SGKL ++RA KFK G + SG+ V E +D A
Sbjct: 130 VEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRA 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,639,819
Number of Sequences: 539616
Number of extensions: 1220472
Number of successful extensions: 3397
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3310
Number of HSP's gapped (non-prelim): 115
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)