Query 046473
Match_columns 120
No_of_seqs 114 out of 801
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 22:05:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_D RP13, YS3, 40S ribosoma 100.0 1.5E-45 5.1E-50 292.2 8.7 114 2-115 72-188 (240)
2 3iz6_B 40S ribosomal protein S 100.0 7.7E-46 2.6E-50 291.9 1.5 110 2-111 72-181 (227)
3 3j20_C 30S ribosomal protein S 100.0 8.7E-44 3E-48 277.5 9.7 112 2-115 68-182 (210)
4 2zkq_c 40S ribosomal protein S 100.0 1E-43 3.5E-48 282.1 5.9 114 2-115 72-188 (243)
5 2xzm_C KH domain containing pr 100.0 3.9E-43 1.3E-47 278.7 8.9 114 2-115 75-191 (243)
6 3bbn_C Ribosomal protein S3; s 100.0 6.8E-43 2.3E-47 273.3 4.8 112 2-115 98-213 (218)
7 3r8n_C 30S ribosomal protein S 100.0 2E-42 6.7E-47 269.1 4.8 108 2-114 89-200 (206)
8 3i1m_C 30S ribosomal protein S 100.0 8.7E-42 3E-46 269.6 6.8 109 2-115 90-202 (233)
9 2vqe_C 30S ribosomal protein S 100.0 7.4E-41 2.5E-45 265.1 8.5 108 3-115 91-202 (239)
10 1wh9_A 40S ribosomal protein S 97.3 8.7E-05 3E-09 50.6 1.7 28 2-29 63-90 (92)
11 3gp2_B Calcium/calmodulin-depe 38.6 25 0.00085 17.9 2.2 20 42-61 2-21 (22)
12 3r8n_K 30S ribosomal protein S 24.8 59 0.002 22.4 3.0 27 48-74 54-80 (117)
13 2rre_A NVL2, putative uncharac 24.1 1.5E+02 0.0052 19.2 4.8 36 23-58 31-72 (78)
14 1p65_A Nucleocapsid protein; v 23.1 57 0.002 20.9 2.4 28 46-73 22-49 (73)
15 4dac_A Computationally designe 23.0 16 0.00053 19.4 -0.2 9 70-78 18-26 (28)
16 2vqe_K 30S ribosomal protein S 21.4 87 0.003 21.9 3.4 27 48-74 64-90 (129)
17 3j20_M 30S ribosomal protein S 20.8 77 0.0026 22.5 3.0 24 48-71 63-86 (137)
18 2jvf_A De novo protein M7; tet 20.3 1.6E+02 0.0054 19.3 4.2 16 57-72 43-58 (96)
No 1
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=100.00 E-value=1.5e-45 Score=292.15 Aligned_cols=114 Identities=56% Similarity=0.920 Sum_probs=110.0
Q ss_pred ccccccCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhCCceeEEEEecccchhhhhhcc
Q 046473 2 AVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMK 81 (120)
Q Consensus 2 ~l~k~~~~~~~~i~i~v~eV~~p~l~a~i~A~~ia~qLe~r~~fRra~~~ai~~~m~aGAkGikI~ISGrL~GerAR~e~ 81 (120)
.|+++|++++++|+|+++||++|++||+++|++||+|||+|++|||||+++|+++|++||+||||+|||||+|+|||+||
T Consensus 72 ~l~k~~~~~~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRA~k~ai~~am~aGakGikI~iSGRL~Ga~ARtE~ 151 (240)
T 3u5c_D 72 LVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMK 151 (240)
T ss_dssp HHHHHHTCCTTSSEEEEECCSCGGGCHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHTTCSEEEEEEEECSSSSSCEEEE
T ss_pred HHHHHhCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCceeEEEEecccCCceeeEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccchhhhhhhheeeeEeCcCCee---EEec
Q 046473 82 FKDGYMISSGYPVKEYIDSAVRHVLXRQAS---SIFC 115 (120)
Q Consensus 82 ~~eG~vp~sG~~~~~~idy~~~~a~tk~Gv---~~~~ 115 (120)
|++|+|+|||||++++||||+++|+|+||+ +||-
T Consensus 152 ~~eG~vlhTgqtlra~IDYa~~~a~T~yGviGVKVWI 188 (240)
T 3u5c_D 152 FADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKI 188 (240)
T ss_dssp EEEECCCCSSHHHHHHEEEEEEEEECSSCEEEEEEEE
T ss_pred eecCeeccCCChhhheeeEEEEEEEcCCeeEEEEEEE
Confidence 999999999999999999999999999985 4774
No 2
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.7e-46 Score=291.88 Aligned_cols=110 Identities=79% Similarity=1.154 Sum_probs=107.5
Q ss_pred ccccccCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhCCceeEEEEecccchhhhhhcc
Q 046473 2 AVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMK 81 (120)
Q Consensus 2 ~l~k~~~~~~~~i~i~v~eV~~p~l~a~i~A~~ia~qLe~r~~fRra~~~ai~~~m~aGAkGikI~ISGrL~GerAR~e~ 81 (120)
.|+++|++++++++|+++||++|++||+++|++||+|||+|++|||||+++++++|++||+||||+|||||+|+|||+||
T Consensus 72 ~l~k~~~~~~~~v~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRrA~k~ai~~~m~aGakGikI~iSGRL~GaiARtE~ 151 (227)
T 3iz6_B 72 VVQKRFNFLENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMK 151 (227)
T ss_dssp HHHHHHCCCSCCCCCEEECCSSSTTSCSHHHHHHHTTTTTCCCHHHHHHHHHHTTTTTCCSEEECCBCSCGGGSSCCCBC
T ss_pred HHHHHhCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCceEEEEEecccCCceeeEee
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccchhhhhhhheeeeEeCcCCee
Q 046473 82 FKDGYMISSGYPVKEYIDSAVRHVLXRQAS 111 (120)
Q Consensus 82 ~~eG~vp~sG~~~~~~idy~~~~a~tk~Gv 111 (120)
|+||+|||||||++++||||+++|+|+||+
T Consensus 152 ~~eG~vlhTlqtlra~IDya~~~a~T~yGv 181 (227)
T 3iz6_B 152 FKDGYMISSGQPVNEYIDAAVRHVLLRQGV 181 (227)
T ss_dssp CEEECCCSSSSCTTSCEEECCCCCBCSSSB
T ss_pred eeCCeecccCChhhheeeEEEEEEEcCCee
Confidence 999999999999999999999999999885
No 3
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.7e-44 Score=277.49 Aligned_cols=112 Identities=29% Similarity=0.458 Sum_probs=103.4
Q ss_pred ccccccCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhCCceeEEEEecccchhhhhhcc
Q 046473 2 AVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMK 81 (120)
Q Consensus 2 ~l~k~~~~~~~~i~i~v~eV~~p~l~a~i~A~~ia~qLe~r~~fRra~~~ai~~~m~aGAkGikI~ISGrL~GerAR~e~ 81 (120)
.|+++|++++ ++|+++||++|++||+++|++||+|||+|++|||||+++++++|++||+||+|+|||||+|||||+||
T Consensus 68 ~l~k~~~~~~--v~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~GakGikI~iSGRL~GeiARtE~ 145 (210)
T 3j20_C 68 ILEKQFGLEN--PQIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIR 145 (210)
T ss_dssp HHHHHSSCSS--CEEEEEECSCTTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSEEEEEEEECTTTTSCEEEE
T ss_pred HHHHHhCCCc--eEEEEEEecCCccCHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCceEEEEEecccCcceeeEEe
Confidence 4788898744 66778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccchhhhhhhheeeeEeCcCCe---eEEec
Q 046473 82 FKDGYMISSGYPVKEYIDSAVRHVLXRQA---SSIFC 115 (120)
Q Consensus 82 ~~eG~vp~sG~~~~~~idy~~~~a~tk~G---v~~~~ 115 (120)
|++|+||++|.+.+++||||+++|+|+|| |+||-
T Consensus 146 ~~eG~vpl~tl~a~~~IDya~~~a~T~yGviGVKVwI 182 (210)
T 3j20_C 146 FYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182 (210)
T ss_dssp EEEECCCCSSSHHHHHSEEEEEEEECSSCEEEEEEEE
T ss_pred eecceeeccCCcchhcEEEEEEEEEcCCcEEEEEEEE
Confidence 99999999876677799999999999998 56763
No 4
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1e-43 Score=282.06 Aligned_cols=114 Identities=71% Similarity=1.052 Sum_probs=108.6
Q ss_pred ccccccCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhCCceeEEEEecccchhhhhhcc
Q 046473 2 AVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMK 81 (120)
Q Consensus 2 ~l~k~~~~~~~~i~i~v~eV~~p~l~a~i~A~~ia~qLe~r~~fRra~~~ai~~~m~aGAkGikI~ISGrL~GerAR~e~ 81 (120)
.|+++|++.+++++|+++||++|++||+++|++||+|||+|++|||||+++|+++|++||+||||+|||||+|+|||+||
T Consensus 72 ~L~k~~~~~~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRa~k~ai~~am~aGakGikI~iSGRL~GaiARtE~ 151 (243)
T 2zkq_c 72 VVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMK 151 (243)
T ss_dssp HHHHHSCTTTCCCCCEEEECSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSCSEEEEEECSSGGGSSCCCBC
T ss_pred HHHHHhCcCCceEEEEEEEecCcccCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCceEEEEEecchhhHhhhhhh
Confidence 47889999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccchhhhhhhheeeeEeCcCCee---EEec
Q 046473 82 FKDGYMISSGYPVKEYIDSAVRHVLXRQAS---SIFC 115 (120)
Q Consensus 82 ~~eG~vp~sG~~~~~~idy~~~~a~tk~Gv---~~~~ 115 (120)
|+||+|.|||+|++++||||+++|+|+||+ +||-
T Consensus 152 ~~eG~vLhTg~plra~IDYa~~~a~T~yGvlGVKVWI 188 (243)
T 2zkq_c 152 FVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKI 188 (243)
T ss_dssp CEEESSHHHHSSTTCCEEEEEECCCCSSCCCCEEEEE
T ss_pred hcCcEEeecCchhhhceeEEEEEEEcCCceEEEEEEE
Confidence 999999888888999999999999998864 6664
No 5
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=100.00 E-value=3.9e-43 Score=278.74 Aligned_cols=114 Identities=42% Similarity=0.783 Sum_probs=108.8
Q ss_pred ccccccCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhCCceeEEEEecccchhhhhhcc
Q 046473 2 AVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRAQRATSMK 81 (120)
Q Consensus 2 ~l~k~~~~~~~~i~i~v~eV~~p~l~a~i~A~~ia~qLe~r~~fRra~~~ai~~~m~aGAkGikI~ISGrL~GerAR~e~ 81 (120)
.|+++|++.+++++|+++||++|++||+++|++||+|||+|++|||||+++|+++|++||+||||+|||||+|+|||+||
T Consensus 75 ~L~k~~~~~~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~Rv~FRRA~k~ai~~am~aGakGIkI~iSGRL~GaiARtE~ 154 (243)
T 2xzm_C 75 FLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEIIISGKLKQQRAKTMK 154 (243)
T ss_dssp HHHHHHCCTTTTSEEEEEECSCGGGCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCSEEEEEEEECTTSSSCEEEE
T ss_pred HHHHHhCcCCceEEEEEEEecCcccCHHHHHHHHHHHHHccchHHHHHHHHHHHHHhcCCceEEEEEeCCccchhheeee
Confidence 47889999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccchhhhhhhheeeeEeCcCCee---EEec
Q 046473 82 FKDGYMISSGYPVKEYIDSAVRHVLXRQAS---SIFC 115 (120)
Q Consensus 82 ~~eG~vp~sG~~~~~~idy~~~~a~tk~Gv---~~~~ 115 (120)
|+||+|.|||+|++++||||+++|+|+||+ +||-
T Consensus 155 ~~eG~vL~T~rplra~IDYa~~~a~T~yGvlGVKVWI 191 (243)
T 2xzm_C 155 FKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGVKVKI 191 (243)
T ss_dssp EEEECCCCSSSHHHHSEEEEEEEEECSSSEEEEEEEE
T ss_pred eeCCeEeecCcchhhheEEEEEEEEcCCceEEEEEEE
Confidence 999999999999999999999999999875 5664
No 6
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=6.8e-43 Score=273.30 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=105.8
Q ss_pred ccccccCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhCCceeEEEEecccch-hhhhhc
Q 046473 2 AVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRA-QRATSM 80 (120)
Q Consensus 2 ~l~k~~~~~~~~i~i~v~eV~~p~l~a~i~A~~ia~qLe~r~~fRra~~~ai~~~m~aGAkGikI~ISGrL~G-erAR~e 80 (120)
.|++.|++.+++++|+++||++|++||+++|++||+|||+|++|||||+++++++|++||+||||+|||||+| ||||+|
T Consensus 98 ~l~k~~~~~~~~v~i~i~ev~~p~l~A~lvAe~Ia~qLe~r~~fRra~k~ai~~~m~~gakGikI~iSGRL~Gae~AR~e 177 (218)
T 3bbn_C 98 NVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARIE 177 (218)
T ss_dssp HHHHHSCSSCCCCCCCEEECSCTTTSHHHHHHHSTTTTTTTCCHHHHHTHHHHHHHTTCCSEEEEECCSCCTTCSSCCCC
T ss_pred HHHHHhccCCceEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhCCCeEEEEEccCcchhhheeEE
Confidence 3677888778889999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cccceeeeccchhhhhhhheeeeEeCcCCe---eEEec
Q 046473 81 KFKDGYMISSGYPVKEYIDSAVRHVLXRQA---SSIFC 115 (120)
Q Consensus 81 ~~~eG~vp~sG~~~~~~idy~~~~a~tk~G---v~~~~ 115 (120)
||+||+||+ ||++++||||+++|+|+|| |+||-
T Consensus 178 ~~~eG~vpl--~tlra~IDy~~~~a~T~yGviGVKVWI 213 (218)
T 3bbn_C 178 WIREGRVPL--QTIRAKIDYCAYTVRTIYGVLGIKIWI 213 (218)
T ss_dssp EEEEECCCS--SCSTTCCBCCEEECCCSSCCCEEEEEE
T ss_pred eEecccccC--CccccceEEEEEEEEcCCeeEEEEEEE
Confidence 999999999 5999999999999999887 56774
No 7
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=100.00 E-value=2e-42 Score=269.10 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=100.9
Q ss_pred ccccccCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhCCceeEEEEecccch-hhhhhc
Q 046473 2 AVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRA-QRATSM 80 (120)
Q Consensus 2 ~l~k~~~~~~~~i~i~v~eV~~p~l~a~i~A~~ia~qLe~r~~fRra~~~ai~~~m~aGAkGikI~ISGrL~G-erAR~e 80 (120)
.|+++|+. +++|+++||++|++||+++|++||+|||+|++|||||+++++++|++||+||||+|||||+| ||||+|
T Consensus 89 ~l~k~~~~---~v~I~i~ev~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~gakGikI~iSGRL~Gae~AR~e 165 (206)
T 3r8n_C 89 VVADIAGV---PAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTE 165 (206)
T ss_dssp HHHHHHSS---CBCCBCCBCSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEECCSSSTTCSSCCCC
T ss_pred HHHHHHCC---ceEEEEEecCCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHHHhhcCCCceEEEEccccCCCcceeEE
Confidence 46778875 37788999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cccceeeeccchhhhhhhheeeeEeCcCCee---EEe
Q 046473 81 KFKDGYMISSGYPVKEYIDSAVRHVLXRQAS---SIF 114 (120)
Q Consensus 81 ~~~eG~vp~sG~~~~~~idy~~~~a~tk~Gv---~~~ 114 (120)
||+||+||++ |++++||||+++|+|+||+ +||
T Consensus 166 ~~~eG~vpl~--tlra~IDy~~~~a~T~yGviGVKVw 200 (206)
T 3r8n_C 166 WYREGRVPLH--TLRADIDYNTSEAHTTYGVIGVKVW 200 (206)
T ss_dssp CCEESCCCTT--CSSSCEEEEEEEEEETTEEEEEEEE
T ss_pred EEecceeecc--ccccccEEEEEEEEcCCeeEEEEEE
Confidence 9999999984 7999999999999999984 566
No 8
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=100.00 E-value=8.7e-42 Score=269.64 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=101.6
Q ss_pred ccccccCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhCCceeEEEEecccch-hhhhhc
Q 046473 2 AVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRA-QRATSM 80 (120)
Q Consensus 2 ~l~k~~~~~~~~i~i~v~eV~~p~l~a~i~A~~ia~qLe~r~~fRra~~~ai~~~m~aGAkGikI~ISGrL~G-erAR~e 80 (120)
.|+++|+. +++|+|+||++|++||+++|++||+|||+|++|||||+++|+++|++||+||||+|||||+| ||||+|
T Consensus 90 ~L~k~~~~---~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRramk~ai~~am~aGakGikI~iSGRL~GaeiARtE 166 (233)
T 3i1m_C 90 VVADIAGV---PAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTE 166 (233)
T ss_dssp HHHHHHTS---CBCCEEEECSSGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEEEESSTTSCSSCCCC
T ss_pred HHHHHHCC---ceEEEEEeecCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHhhhhcCCceEEEEEccccCCCcceeEE
Confidence 46778875 37888999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred cccceeeeccchhhhhhhheeeeEeCcCCe---eEEec
Q 046473 81 KFKDGYMISSGYPVKEYIDSAVRHVLXRQA---SSIFC 115 (120)
Q Consensus 81 ~~~eG~vp~sG~~~~~~idy~~~~a~tk~G---v~~~~ 115 (120)
||++|+||++ |++++||||+++|+|+|| |+||-
T Consensus 167 ~~~eG~vPL~--Tlra~IDY~~~~a~T~yGviGVKVWI 202 (233)
T 3i1m_C 167 WYREGRVPLH--TLRADIDYNTSEAHTTYGVIGVKVWI 202 (233)
T ss_dssp BCCEECCCTT--CSSSEEEEEEECCEETTEECEEEEEE
T ss_pred EEecCeeecc--ccccccEEEEEEEEcCCeeEEEEEEE
Confidence 9999999984 799999999999999987 56773
No 9
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=100.00 E-value=7.4e-41 Score=265.09 Aligned_cols=108 Identities=23% Similarity=0.260 Sum_probs=100.7
Q ss_pred cccccCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhCCceeEEEEecccch-hhhhhcc
Q 046473 3 VQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRKEGLAVIVCKMACYGVLRFIMESGAKGCEVIVSGKLRA-QRATSMK 81 (120)
Q Consensus 3 l~k~~~~~~~~i~i~v~eV~~p~l~a~i~A~~ia~qLe~r~~fRra~~~ai~~~m~aGAkGikI~ISGrL~G-erAR~e~ 81 (120)
|++.|+ .+++|++.||++|++||+++|++||+|||+|++|||||+++++++|++||+||||+|||||+| ||||+||
T Consensus 91 L~k~~~---~~v~I~i~eVk~p~l~A~lvAe~Ia~qLe~rv~FRra~k~ai~~am~~gakGIkI~iSGRL~GaeiARtE~ 167 (239)
T 2vqe_C 91 LAKLTG---KNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEW 167 (239)
T ss_dssp HHHHST---TCCCCEEEECSCTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSCSEEEEEECSCTTTCSSCCCBC
T ss_pred HHHHhC---CeeEEEEEEecCCCcCHHHHHHHHHHHHHccchHHHHHHHHHHHHHHcCCCceEEEEcCCcchhhhhhhhh
Confidence 566665 468888999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred ccceeeeccchhhhhhhheeeeEeCcCCe---eEEec
Q 046473 82 FKDGYMISSGYPVKEYIDSAVRHVLXRQA---SSIFC 115 (120)
Q Consensus 82 ~~eG~vp~sG~~~~~~idy~~~~a~tk~G---v~~~~ 115 (120)
|++|+||++ |++++||||+++|+|+|| |+||-
T Consensus 168 ~~eG~vpL~--Tlra~IDYa~~~a~T~yGviGVKVWI 202 (239)
T 2vqe_C 168 AAQGRVPLH--TLRANIDYGFALARTTYGVLGVKAYI 202 (239)
T ss_dssp CEEECCCTT--CGGGCEEEEEECCBCSSCBCCEEEEE
T ss_pred hhcCccccC--CccceeEEEEEEEEcCCeeEEEEEEE
Confidence 999999984 799999999999999987 56774
No 10
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=97.27 E-value=8.7e-05 Score=50.57 Aligned_cols=28 Identities=68% Similarity=0.929 Sum_probs=25.6
Q ss_pred ccccccCCCCCeEEEEEEEecCCCcCHH
Q 046473 2 AVQKRFKFPENSVELYAEKVNNRGLCAI 29 (120)
Q Consensus 2 ~l~k~~~~~~~~i~i~v~eV~~p~l~a~ 29 (120)
.|++.|++.+++|+|+|+||++|++||+
T Consensus 63 ~l~k~~~~~~~~v~I~I~eV~~P~ldA~ 90 (92)
T 1wh9_A 63 VVQKRFGFPEGSVELYAEKVATRGSGPS 90 (92)
T ss_dssp HHHHHHCCCTTSEEEEEEECCCSCCCSC
T ss_pred HHHHHhCCCCCeEEEEEEEecCCCcCCC
Confidence 4788999989999999999999999985
No 11
>3gp2_B Calcium/calmodulin-dependent protein kinase type II delta chain; metal binding protein, ATP-binding, calmodulin- binding, nucleotide-binding; 1.46A {Homo sapiens}
Probab=38.58 E-value=25 Score=17.89 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHhCC
Q 046473 42 VIVCKMACYGVLRFIMESGA 61 (120)
Q Consensus 42 r~~fRra~~~ai~~~m~aGA 61 (120)
+..+||.+|.+|..+|-+.|
T Consensus 2 kFNaRRKLK~aIl~~~~~t~ 21 (22)
T 3gp2_B 2 SFNARRKLKGAILTTMLATA 21 (26)
T ss_pred cccHHHHHHHHHHHHHHHhc
Confidence 35689999999999887765
No 12
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=24.77 E-value=59 Score=22.36 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCceeEEEEecccch
Q 046473 48 ACYGVLRFIMESGAKGCEVIVSGKLRA 74 (120)
Q Consensus 48 a~~~ai~~~m~aGAkGikI~ISGrL~G 74 (120)
|...+.+.+++.|.+.++|.+.|==.|
T Consensus 54 aa~~~~~~~~~~Gi~~v~v~vkG~G~G 80 (117)
T 3r8n_K 54 AAERCADAVKEYGIKNLEVMVKGPGPG 80 (117)
T ss_dssp HHHHHHHHHTTSCCCEEEEEEECSSSS
T ss_pred HHHHHHHHHHHhCCcEEEEEEeCCCcc
Confidence 344555677888999999999875444
No 13
>2rre_A NVL2, putative uncharacterized protein; nucleolar localization signal, RNA binding, alternatively SP domain, nuclear protein; NMR {Mus musculus}
Probab=24.10 E-value=1.5e+02 Score=19.19 Aligned_cols=36 Identities=11% Similarity=-0.015 Sum_probs=29.2
Q ss_pred CCCcCHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHH
Q 046473 23 NRGLCAIAQAESLRKEGL------AVIVCKMACYGVLRFIME 58 (120)
Q Consensus 23 ~p~l~a~i~A~~ia~qLe------~r~~fRra~~~ai~~~m~ 58 (120)
.-++|+..+|..|-.+-- ++-+||.-+.+++..+..
T Consensus 31 ~~YvD~~~ma~~Lq~~Y~~eY~Rrk~~~Fr~~Veka~~~I~~ 72 (78)
T 2rre_A 31 GKYVDTGILASDLQRLYSVDYGRRKRNAFRIQVEKVFSIISS 72 (78)
T ss_dssp SSSCCHHHHHHHHHHHTTTTTCSSCHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHH
Confidence 346999999999988875 457899999998888764
No 14
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=23.11 E-value=57 Score=20.90 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCceeEEEEecccc
Q 046473 46 KMACYGVLRFIMESGAKGCEVIVSGKLR 73 (120)
Q Consensus 46 Rra~~~ai~~~m~aGAkGikI~ISGrL~ 73 (120)
|.-+.+.|+.+.+-||--|-..=|||++
T Consensus 22 rqlcl~SiqTafNQGaGt~sLs~SG~is 49 (73)
T 1p65_A 22 RQLCLSSIQTAFNQGAGTCTLSDSGRIS 49 (73)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECTTSCEE
T ss_pred HHHHHHHHHHHHhCCCceEEeccCCcee
Confidence 5568889999999999999999999996
No 15
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=23.05 E-value=16 Score=19.35 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=6.5
Q ss_pred cccchhhhh
Q 046473 70 GKLRAQRAT 78 (120)
Q Consensus 70 GrL~GerAR 78 (120)
|+|.||.||
T Consensus 18 gklegevar 26 (28)
T 4dac_A 18 GKLEGEVAR 26 (28)
T ss_dssp HHHHHHTTT
T ss_pred hhhhhhhhh
Confidence 677777766
No 16
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=21.43 E-value=87 Score=21.88 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCceeEEEEecccch
Q 046473 48 ACYGVLRFIMESGAKGCEVIVSGKLRA 74 (120)
Q Consensus 48 a~~~ai~~~m~aGAkGikI~ISGrL~G 74 (120)
|...+.+.+++.|-+.++|.+.|-=.|
T Consensus 64 aa~~~~~~~~~~Gi~~v~V~vkG~G~G 90 (129)
T 2vqe_K 64 AALDAAKKAMAYGMQSVDVIVRGTGAG 90 (129)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEESCCTT
T ss_pred HHHHHHHHHHHhCCeEEEEEEECCCCC
Confidence 445566677888999999999985445
No 17
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.78 E-value=77 Score=22.50 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCceeEEEEecc
Q 046473 48 ACYGVLRFIMESGAKGCEVIVSGK 71 (120)
Q Consensus 48 a~~~ai~~~m~aGAkGikI~ISGr 71 (120)
|...+.+.+++.|.+.++|.|.|-
T Consensus 63 aa~~~~~~a~e~Gi~~v~V~vkG~ 86 (137)
T 3j20_M 63 AARRAAEEALEKGIVGVHIRVRAP 86 (137)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHHcCCeEEEEEEECC
Confidence 345566677888999999999993
No 18
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=20.27 E-value=1.6e+02 Score=19.33 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=13.3
Q ss_pred HHhCCceeEEEEeccc
Q 046473 57 MESGAKGCEVIVSGKL 72 (120)
Q Consensus 57 m~aGAkGikI~ISGrL 72 (120)
-++||+.+.|.||..-
T Consensus 43 aragarnvqitisaen 58 (96)
T 2jvf_A 43 ARAGARNVQITISAEN 58 (96)
T ss_dssp HHHTCSEEEEEEECSS
T ss_pred HhccccceEEEEEecC
Confidence 4779999999999753
Done!