RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046473
         (120 letters)



>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 92

 Score = 47.0 bits (112), Expect = 9e-09
 Identities = 19/30 (63%), Positives = 21/30 (70%)

Query: 1  SAVQKRFKFPENSVELYAEKVNNRGLCAIA 30
          + VQKRF FPE SVELYAEKV  RG    +
Sbjct: 62 AVVQKRFGFPEGSVELYAEKVATRGSGPSS 91


>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
           protein PrpR {Escherichia coli [TaxId: 562]}
          Length = 186

 Score = 26.6 bits (59), Expect = 0.65
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 61  AKGCEVIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDSAVR 103
           A G E +V   L    A       G  I S   V++    A+ 
Sbjct: 140 ANGTEAVVGAGLITDLAEEAGMT-GIFIYSAATVRQAFSDALD 181


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 412,981
Number of extensions: 16143
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 4
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.0 bits)