Query 046476
Match_columns 376
No_of_seqs 135 out of 1519
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 12:31:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 6.5E-35 1.4E-39 260.3 27.1 223 87-339 1-230 (230)
2 PF08268 FBA_3: F-box associat 99.7 2E-16 4.4E-21 127.8 14.3 112 207-321 1-118 (129)
3 PF07734 FBA_1: F-box associat 99.7 1.1E-15 2.4E-20 128.7 15.8 135 207-346 1-148 (164)
4 PLN03215 ascorbic acid mannose 99.4 2.1E-10 4.5E-15 106.8 23.1 298 5-345 3-354 (373)
5 PHA02713 hypothetical protein; 99.0 3.9E-08 8.4E-13 98.7 20.4 208 102-352 320-548 (557)
6 PF12937 F-box-like: F-box-lik 98.8 2.1E-09 4.5E-14 70.3 2.3 42 7-50 2-43 (47)
7 PHA03098 kelch-like protein; P 98.8 7.9E-07 1.7E-11 89.3 21.1 201 103-345 312-519 (534)
8 PHA02790 Kelch-like protein; P 98.8 7.5E-07 1.6E-11 88.0 20.0 188 102-343 287-476 (480)
9 PLN02153 epithiospecifier prot 98.7 1.4E-06 3.1E-11 82.4 19.9 212 102-346 50-293 (341)
10 PHA02713 hypothetical protein; 98.7 1.6E-06 3.4E-11 87.2 21.0 203 103-345 273-497 (557)
11 KOG4441 Proteins containing BT 98.7 1.8E-06 3.9E-11 86.7 19.9 199 102-345 349-554 (571)
12 PLN02193 nitrile-specifier pro 98.7 3.2E-06 7E-11 83.3 20.7 160 178-346 243-419 (470)
13 TIGR03548 mutarot_permut cycli 98.7 1.3E-05 2.8E-10 75.3 23.4 111 178-295 87-203 (323)
14 smart00256 FBOX A Receptor for 98.6 7.9E-09 1.7E-13 65.3 1.0 39 9-49 1-39 (41)
15 TIGR03547 muta_rot_YjhT mutatr 98.6 1.2E-05 2.6E-10 76.2 22.6 164 178-345 84-306 (346)
16 PF00646 F-box: F-box domain; 98.6 1.3E-08 2.7E-13 66.9 1.5 43 7-51 4-46 (48)
17 KOG4441 Proteins containing BT 98.6 3.4E-06 7.4E-11 84.7 19.5 202 102-346 301-508 (571)
18 PRK14131 N-acetylneuraminic ac 98.4 1.9E-05 4.2E-10 75.6 18.4 164 178-345 105-328 (376)
19 PHA03098 kelch-like protein; P 98.3 5.1E-05 1.1E-09 76.3 18.6 156 178-345 310-472 (534)
20 PLN02193 nitrile-specifier pro 98.3 0.00012 2.5E-09 72.4 20.0 161 179-347 193-361 (470)
21 PLN02153 epithiospecifier prot 98.3 0.00014 3.1E-09 68.7 19.8 162 178-347 49-235 (341)
22 PHA02790 Kelch-like protein; P 98.1 0.00015 3.2E-09 71.9 16.8 146 178-345 286-431 (480)
23 TIGR03548 mutarot_permut cycli 98.0 0.00074 1.6E-08 63.3 19.5 135 102-266 88-232 (323)
24 KOG1230 Protein containing rep 97.7 0.002 4.4E-08 60.0 16.0 225 101-350 97-353 (521)
25 KOG0281 Beta-TrCP (transducin 97.7 0.00055 1.2E-08 62.1 11.7 42 7-50 76-121 (499)
26 KOG2120 SCF ubiquitin ligase, 97.5 3.9E-05 8.4E-10 68.7 0.9 38 6-43 98-135 (419)
27 TIGR03547 muta_rot_YjhT mutatr 97.2 0.01 2.2E-07 56.2 14.6 136 102-266 168-330 (346)
28 PRK14131 N-acetylneuraminic ac 97.2 0.02 4.4E-07 54.9 16.6 153 102-281 189-367 (376)
29 KOG4693 Uncharacterized conser 97.2 0.0082 1.8E-07 53.0 12.1 136 177-320 155-307 (392)
30 KOG4693 Uncharacterized conser 96.9 0.043 9.4E-07 48.6 13.7 169 175-350 101-289 (392)
31 KOG0379 Kelch repeat-containin 96.8 0.093 2E-06 52.0 17.3 165 178-348 138-312 (482)
32 KOG0379 Kelch repeat-containin 96.6 0.06 1.3E-06 53.4 14.7 162 180-348 89-260 (482)
33 KOG1230 Protein containing rep 96.0 0.24 5.3E-06 46.6 13.9 152 179-338 98-276 (521)
34 KOG2997 F-box protein FBX9 [Ge 96.0 0.0025 5.5E-08 57.5 1.0 45 7-53 108-157 (366)
35 PF02191 OLF: Olfactomedin-lik 94.2 4 8.7E-05 36.7 17.4 144 204-361 71-227 (250)
36 KOG0274 Cdc4 and related F-box 94.0 7.7 0.00017 39.0 19.9 41 7-49 109-149 (537)
37 smart00284 OLF Olfactomedin-li 92.9 6.8 0.00015 35.2 16.9 130 204-347 76-218 (255)
38 PF13964 Kelch_6: Kelch motif 91.9 0.32 6.8E-06 31.5 4.0 38 205-242 5-44 (50)
39 PF07893 DUF1668: Protein of u 91.5 9.1 0.0002 36.1 15.0 138 100-266 84-252 (342)
40 PF13360 PQQ_2: PQQ-like domai 91.5 8.9 0.00019 33.5 16.7 141 179-344 3-147 (238)
41 COG4257 Vgb Streptogramin lyas 91.2 3.7 7.9E-05 37.0 11.0 141 85-264 193-335 (353)
42 PF07762 DUF1618: Protein of u 90.3 3.4 7.4E-05 32.9 9.5 70 226-296 6-96 (131)
43 PF13360 PQQ_2: PQQ-like domai 90.3 12 0.00025 32.7 18.3 137 180-344 87-237 (238)
44 PF07646 Kelch_2: Kelch motif; 90.2 0.76 1.6E-05 29.6 4.5 41 204-244 4-48 (49)
45 PF08450 SGL: SMP-30/Gluconola 89.2 15 0.00033 32.5 22.0 200 89-347 9-223 (246)
46 KOG0316 Conserved WD40 repeat- 88.4 17 0.00037 32.1 14.8 115 88-247 25-144 (307)
47 KOG0293 WD40 repeat-containing 88.4 13 0.00029 35.3 12.7 136 179-344 334-477 (519)
48 TIGR01640 F_box_assoc_1 F-box 88.1 15 0.00033 32.2 12.9 122 209-347 3-137 (230)
49 KOG4152 Host cell transcriptio 87.6 4.3 9.2E-05 39.7 9.2 89 103-219 58-154 (830)
50 KOG4341 F-box protein containi 87.5 0.25 5.3E-06 46.9 1.0 40 4-43 70-109 (483)
51 PF07250 Glyoxal_oxid_N: Glyox 87.4 16 0.00034 32.7 12.3 147 179-341 46-201 (243)
52 PF13964 Kelch_6: Kelch motif 87.2 0.94 2E-05 29.2 3.5 22 101-122 27-48 (50)
53 PF01344 Kelch_1: Kelch motif; 86.8 1.7 3.6E-05 27.5 4.4 38 205-242 5-44 (47)
54 PRK11138 outer membrane biogen 86.6 15 0.00033 35.2 13.0 112 205-344 63-185 (394)
55 COG2706 3-carboxymuconate cycl 83.0 41 0.00088 31.5 16.0 125 211-346 155-285 (346)
56 PRK11138 outer membrane biogen 82.3 48 0.001 31.8 19.9 109 204-343 249-359 (394)
57 KOG0315 G-protein beta subunit 82.1 37 0.0008 30.3 19.1 176 146-349 79-257 (311)
58 smart00612 Kelch Kelch domain. 80.1 4.4 9.6E-05 25.0 4.4 21 178-198 14-34 (47)
59 TIGR03300 assembly_YfgL outer 77.5 49 0.0011 31.3 12.6 108 205-342 59-168 (377)
60 COG3055 Uncharacterized protei 76.5 11 0.00023 35.3 7.1 119 178-299 112-267 (381)
61 PF10282 Lactonase: Lactonase, 75.5 72 0.0016 30.0 17.1 122 211-346 154-286 (345)
62 PF13418 Kelch_4: Galactose ox 75.4 3.7 8E-05 26.2 3.0 31 91-121 13-48 (49)
63 PF10282 Lactonase: Lactonase, 75.1 74 0.0016 29.9 21.0 150 178-345 165-332 (345)
64 TIGR03075 PQQ_enz_alc_DH PQQ-d 74.7 59 0.0013 32.7 12.7 122 204-344 62-196 (527)
65 KOG2106 Uncharacterized conser 73.5 84 0.0018 31.0 12.4 39 209-247 285-329 (626)
66 PF07893 DUF1668: Protein of u 73.2 84 0.0018 29.6 13.5 113 225-344 85-214 (342)
67 PF08450 SGL: SMP-30/Gluconola 72.3 69 0.0015 28.2 14.9 113 211-344 11-129 (246)
68 PF06433 Me-amine-dh_H: Methyl 70.4 97 0.0021 29.2 13.5 120 205-343 187-326 (342)
69 COG4257 Vgb Streptogramin lyas 69.0 93 0.002 28.4 17.3 225 86-346 67-314 (353)
70 COG1520 FOG: WD40-like repeat 68.4 1.1E+02 0.0024 29.0 14.0 141 179-344 35-178 (370)
71 KOG3545 Olfactomedin and relat 68.4 88 0.0019 27.9 12.1 129 204-346 70-211 (249)
72 PF07646 Kelch_2: Kelch motif; 67.9 12 0.00027 23.8 4.2 41 251-295 5-47 (49)
73 TIGR03074 PQQ_membr_DH membran 67.9 1.5E+02 0.0033 31.4 14.1 32 204-240 187-220 (764)
74 PF13570 PQQ_3: PQQ-like domai 67.3 9 0.0002 23.2 3.2 27 204-235 14-40 (40)
75 KOG2055 WD40 repeat protein [G 67.0 1.3E+02 0.0028 29.3 14.3 100 225-344 279-381 (514)
76 TIGR03300 assembly_YfgL outer 65.9 1.2E+02 0.0026 28.6 21.2 134 179-341 155-301 (377)
77 PF02897 Peptidase_S9_N: Proly 65.7 1.3E+02 0.0028 28.9 18.3 124 209-346 285-413 (414)
78 smart00564 PQQ beta-propeller 65.5 17 0.00037 20.6 4.1 25 315-343 6-30 (33)
79 PLN02772 guanylate kinase 63.9 29 0.00063 33.4 7.3 87 250-342 27-113 (398)
80 PF01011 PQQ: PQQ enzyme repea 63.5 17 0.00036 21.8 3.9 25 317-345 2-26 (38)
81 cd01207 Ena-Vasp Enabled-VASP- 60.9 32 0.00069 26.6 5.8 45 101-160 8-52 (111)
82 PLN00181 protein SPA1-RELATED; 59.2 2.5E+02 0.0053 29.9 23.2 102 225-339 639-740 (793)
83 PF01344 Kelch_1: Kelch motif; 59.1 40 0.00087 20.8 6.5 42 250-295 4-45 (47)
84 PF13415 Kelch_3: Galactose ox 58.6 11 0.00024 24.0 2.6 23 102-124 19-41 (49)
85 PLN02772 guanylate kinase 58.6 61 0.0013 31.2 8.5 75 204-281 27-107 (398)
86 KOG0279 G protein beta subunit 55.1 1.3E+02 0.0029 27.4 9.4 94 225-341 171-266 (315)
87 PF05096 Glu_cyclase_2: Glutam 54.5 1.7E+02 0.0036 26.5 16.2 141 178-344 67-210 (264)
88 KOG0321 WD40 repeat-containing 53.1 39 0.00084 34.1 6.3 103 225-342 73-180 (720)
89 KOG0639 Transducin-like enhanc 50.5 2.3E+02 0.0051 28.1 10.8 53 225-281 486-540 (705)
90 cd01206 Homer Homer type EVH1 49.2 49 0.0011 25.4 5.0 41 101-159 10-51 (111)
91 KOG0649 WD40 repeat protein [G 48.7 83 0.0018 28.1 7.0 82 271-361 80-166 (325)
92 PF03088 Str_synth: Strictosid 48.0 51 0.0011 24.4 4.9 35 310-344 3-52 (89)
93 PRK04792 tolB translocation pr 47.8 2.8E+02 0.0061 27.2 21.7 147 178-345 285-433 (448)
94 PF08268 FBA_3: F-box associat 47.7 52 0.0011 25.8 5.4 35 313-347 3-38 (129)
95 KOG0292 Vesicle coat complex C 46.0 89 0.0019 33.2 7.7 61 270-343 226-286 (1202)
96 KOG2502 Tub family proteins [G 44.8 13 0.00029 34.6 1.7 38 6-43 45-90 (355)
97 PF13013 F-box-like_2: F-box-l 44.2 8.8 0.00019 29.6 0.4 29 6-34 22-50 (109)
98 PRK05137 tolB translocation pr 40.7 3.5E+02 0.0076 26.2 21.5 196 100-348 224-423 (435)
99 KOG0291 WD40-repeat-containing 40.5 4.6E+02 0.01 27.6 13.1 118 205-341 249-384 (893)
100 KOG0289 mRNA splicing factor [ 40.1 3.6E+02 0.0079 26.3 12.3 117 208-346 355-471 (506)
101 KOG0301 Phospholipase A2-activ 39.7 3.9E+02 0.0084 27.6 10.9 88 225-337 199-288 (745)
102 KOG4547 WD40 repeat-containing 38.5 4.3E+02 0.0092 26.6 12.1 105 225-349 79-183 (541)
103 KOG1963 WD40 repeat protein [G 37.9 3.5E+02 0.0076 28.5 10.5 104 228-342 434-544 (792)
104 KOG3881 Uncharacterized conser 36.5 2.7E+02 0.0059 26.6 8.7 58 272-341 173-238 (412)
105 PRK11028 6-phosphogluconolacto 35.6 3.5E+02 0.0077 24.8 21.8 117 211-345 185-314 (330)
106 KOG1310 WD40 repeat protein [G 35.0 2.7E+02 0.0059 28.0 8.8 112 88-235 58-179 (758)
107 KOG4152 Host cell transcriptio 33.1 5.1E+02 0.011 26.0 13.8 103 178-281 229-362 (830)
108 KOG0647 mRNA export protein (c 32.5 3.1E+02 0.0066 25.4 8.2 72 271-357 49-122 (347)
109 TIGR02658 TTQ_MADH_Hv methylam 31.8 4.5E+02 0.0099 24.9 14.6 117 209-343 203-336 (352)
110 PF00400 WD40: WD domain, G-be 31.3 1.1E+02 0.0024 17.6 5.7 39 290-335 1-39 (39)
111 KOG2321 WD40 repeat protein [G 31.2 5.1E+02 0.011 26.3 10.0 119 212-349 146-270 (703)
112 KOG2055 WD40 repeat protein [G 30.7 2.4E+02 0.0053 27.6 7.6 63 271-346 234-297 (514)
113 TIGR03866 PQQ_ABC_repeats PQQ- 30.3 3.8E+02 0.0082 23.5 21.9 118 211-349 167-292 (300)
114 PRK04792 tolB translocation pr 29.3 5.5E+02 0.012 25.1 18.6 147 179-345 242-390 (448)
115 KOG3926 F-box proteins [Amino 29.3 24 0.00052 31.8 0.7 37 7-43 203-240 (332)
116 KOG0315 G-protein beta subunit 29.2 4.3E+02 0.0094 23.9 13.4 145 178-344 145-295 (311)
117 KOG2096 WD40 repeat protein [G 28.4 5E+02 0.011 24.3 11.3 108 225-345 107-225 (420)
118 KOG0286 G-protein beta subunit 27.3 5E+02 0.011 24.0 17.9 190 92-340 67-262 (343)
119 COG2706 3-carboxymuconate cycl 27.1 5.4E+02 0.012 24.3 18.1 154 178-346 166-332 (346)
120 KOG0266 WD40 repeat-containing 26.8 6.1E+02 0.013 24.8 11.7 97 225-340 224-321 (456)
121 KOG0294 WD40 repeat-containing 26.1 5.4E+02 0.012 24.0 10.9 96 204-321 45-144 (362)
122 PRK00178 tolB translocation pr 26.0 6E+02 0.013 24.4 21.9 147 178-345 266-414 (430)
123 cd00216 PQQ_DH Dehydrogenases 24.3 6.1E+02 0.013 25.2 9.8 81 180-266 367-457 (488)
124 PF05096 Glu_cyclase_2: Glutam 24.2 5.4E+02 0.012 23.3 12.4 106 210-341 54-161 (264)
125 TIGR03866 PQQ_ABC_repeats PQQ- 22.9 5.2E+02 0.011 22.6 22.3 116 211-344 125-244 (300)
126 PF14157 YmzC: YmzC-like prote 22.7 1.3E+02 0.0027 20.6 3.1 19 327-345 39-57 (63)
127 PF12768 Rax2: Cortical protei 22.5 2.3E+02 0.0051 25.9 5.9 63 177-243 14-81 (281)
128 KOG0265 U5 snRNP-specific prot 21.6 5.1E+02 0.011 24.0 7.6 57 271-341 68-124 (338)
129 KOG0639 Transducin-like enhanc 21.5 3.5E+02 0.0077 26.9 6.9 97 236-342 389-500 (705)
130 PF06058 DCP1: Dcp1-like decap 21.4 1.1E+02 0.0023 24.1 3.0 22 328-349 28-49 (122)
131 PF07433 DUF1513: Protein of u 21.1 6.8E+02 0.015 23.3 10.3 95 154-264 18-117 (305)
132 PRK04043 tolB translocation pr 20.8 7.8E+02 0.017 23.9 14.1 123 211-349 198-321 (419)
133 KOG0310 Conserved WD40 repeat- 20.4 8.4E+02 0.018 24.1 13.4 140 178-346 47-193 (487)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=6.5e-35 Score=260.35 Aligned_cols=223 Identities=27% Similarity=0.490 Sum_probs=165.9
Q ss_pred cccccceEEEEEecCcEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046476 87 TQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNS 166 (376)
Q Consensus 87 ~~s~nGLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 166 (376)
++|||||||+. ....++||||+||+++.||+++.... ... ...++||||+.+++||||++.....
T Consensus 1 ~~sCnGLlc~~--~~~~~~V~NP~T~~~~~LP~~~~~~~-----~~~-----~~~~~~G~d~~~~~YKVv~~~~~~~--- 65 (230)
T TIGR01640 1 VVPCDGLICFS--YGKRLVVWNPSTGQSRWLPTPKSRRS-----NKE-----SDTYFLGYDPIEKQYKVLCFSDRSG--- 65 (230)
T ss_pred CcccceEEEEe--cCCcEEEECCCCCCEEecCCCCCccc-----ccc-----cceEEEeecccCCcEEEEEEEeecC---
Confidence 47999999998 44789999999999999997654220 111 1368999999999999999986532
Q ss_pred CcccceecCCCCCeEEEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCCCC-CEEEEEEcCCceeE-EEeCC
Q 046476 167 SSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTK-PVLAVFDVKEEKFD-IVKLP 244 (376)
Q Consensus 167 ~~~~~~~~~~~~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fDl~~e~~~-~i~~P 244 (376)
......++||++++++||.+...++.......+|++||++||++....+.. ..|++||+++|+|+ .+++|
T Consensus 66 --------~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 66 --------NRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred --------CCCCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 113578999999999999998544322223349999999999997322112 28999999999999 59998
Q ss_pred Ccc---cCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccc-cc-cCcEeEEEccCCcEE
Q 046476 245 DEV---RKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTI-MF-RPPIPVSNSNNGEIL 319 (376)
Q Consensus 245 ~~~---~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~-~~-~~~~~v~~~~~g~il 319 (376)
... .....|++++|+||++.... ...+++||+|++++ +..|+|+++ |+.... .+ ....|+++..+|+|+
T Consensus 138 ~~~~~~~~~~~L~~~~G~L~~v~~~~--~~~~~~IWvl~d~~---~~~W~k~~~-i~~~~~~~~~~~~~~~~~~~~g~I~ 211 (230)
T TIGR01640 138 CGNSDSVDYLSLINYKGKLAVLKQKK--DTNNFDLWVLNDAG---KQEWSKLFT-VPIPPLPDLVDDNFLSGFTDKGEIV 211 (230)
T ss_pred ccccccccceEEEEECCEEEEEEecC--CCCcEEEEEECCCC---CCceeEEEE-EcCcchhhhhhheeEeEEeeCCEEE
Confidence 754 23467999999999998762 23569999999984 556999999 664222 11 123477888899999
Q ss_pred EEecccCCCcEEEEEeCCCC
Q 046476 320 LTEYKSSLVSRVFIYDLKTQ 339 (376)
Q Consensus 320 ~~~~~~~~~~~v~~ydl~t~ 339 (376)
+.... .....+++||++++
T Consensus 212 ~~~~~-~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 212 LCCED-ENPFYIFYYNVGEN 230 (230)
T ss_pred EEeCC-CCceEEEEEeccCC
Confidence 98832 11334999999875
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.72 E-value=2e-16 Score=127.80 Aligned_cols=112 Identities=29% Similarity=0.581 Sum_probs=87.4
Q ss_pred ceEECceEEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcc---cCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCC
Q 046476 207 GLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEV---RKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYG 283 (376)
Q Consensus 207 ~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~---~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~ 283 (376)
|+++||++||++.........|++||+++|+|+.|++|... .....|++++|+||++..........++||+|+|+
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~- 79 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY- 79 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc-
Confidence 68999999999984223478999999999999999999222 67789999999999998874222467999999998
Q ss_pred CCCCCceeEEEEEeecccccc---cCcEeEEEccCCcEEEE
Q 046476 284 RGGGEVWIRRDYVFRFDTIMF---RPPIPVSNSNNGEILLT 321 (376)
Q Consensus 284 ~g~~~~W~~~~~ii~~~~~~~---~~~~~v~~~~~g~il~~ 321 (376)
++++|++...+++...... ....++++.++|+|++.
T Consensus 80 --~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 80 --EKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred --ccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 5799999877555422211 12355688889999998
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.69 E-value=1.1e-15 Score=128.74 Aligned_cols=135 Identities=22% Similarity=0.380 Sum_probs=89.1
Q ss_pred ceEECceEEEEEeCCCCC-CCEEEEEEcCCcee-EEEeCCCcc---cCcceeEec-CCeEEEEEecCCCCCCeEEEEEEc
Q 046476 207 GLCANGFIHWIITNPRKT-KPVLAVFDVKEEKF-DIVKLPDEV---RKHHDLIQA-EEKLGVLDCDDFRSKNKIRVWILK 280 (376)
Q Consensus 207 ~v~~~G~lywl~~~~~~~-~~~il~fDl~~e~~-~~i~~P~~~---~~~~~L~~~-~g~L~~~~~~~~~~~~~~~IW~l~ 280 (376)
||++||++||++...... ...|++||+++|+| +.+++|... .....|... +|+||++... .....++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~--~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC--DETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec--cCCccEEEEEEe
Confidence 689999999999843221 12899999999999 889999876 245666444 7899999764 235569999999
Q ss_pred cCCCCCCCceeEEEEEeecccc-ccc-C--cEeEEEccCCcEEEEecccCCC---cEEEEEeCCCCcEEEEEE
Q 046476 281 DYGRGGGEVWIRRDYVFRFDTI-MFR-P--PIPVSNSNNGEILLTEYKSSLV---SRVFIYDLKTQERRAIKI 346 (376)
Q Consensus 281 ~~~~g~~~~W~~~~~ii~~~~~-~~~-~--~~~v~~~~~g~il~~~~~~~~~---~~v~~ydl~t~~~~~v~~ 346 (376)
++|.| +.+|+|.++ |+.... .+. . ...+.+..++++++....-.+. ..+++|+ +.+..+++.+
T Consensus 79 ~~~~~-~~SWtK~~~-i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~ 148 (164)
T PF07734_consen 79 KYGYG-KESWTKLFT-IDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDI 148 (164)
T ss_pred eeccC-cceEEEEEE-EecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEccc
Confidence 87532 789999999 564322 011 0 1223344445555544221111 5577777 6667777766
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.37 E-value=2.1e-10 Score=106.83 Aligned_cols=298 Identities=13% Similarity=0.156 Sum_probs=155.7
Q ss_pred CCCCCChHHHHHHHccCC-cccccccccccccchhhhcCCchhHHHHHhccccC-CceEE--E-ecCCCCCCC-CCccCC
Q 046476 5 RRDTVPHDVAMDVLKILP-EKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFS-QQHFL--T-IEHQSDEAS-HLLTVP 78 (376)
Q Consensus 5 ~~~~LP~dll~~IL~rLp-~~sl~r~r~VcK~W~~li~~~~~~F~~~~~~~~~~-~~lf~--~-~~~~~~~~~-~~~~~p 78 (376)
.+++||+|||..|..||| ..+++|||+|||+||+.+... . + ..+.+ +|++. . .|...-.+. .++..|
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~--~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV--G---K--KNPFRTRPLILFNPINPSETLTDDRSYISRP 75 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc--c---c--cCCcccccccccCcccCCCCccccccccccc
Confidence 368999999999999998 779999999999999987642 0 0 00011 12111 0 000000000 001111
Q ss_pred CCc----cccee---cccccceEEEEEe--cCcEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEE-EEeC
Q 046476 79 SDF----KLHRV---TQLINGFICFYNI--VGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFL-GFDP 148 (376)
Q Consensus 79 ~~~----~~~~~---~~s~nGLl~~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~-g~d~ 148 (376)
... .+..+ -++..|+|.-... ....+.+.||.++....+|+....-. ...+.. .+ ..+.+ +.+.
T Consensus 76 ~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll--~f~v~e-i~---~~y~l~~~~~ 149 (373)
T PLN03215 76 GAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLL--EFTVSE-IR---EAYQVLDWAK 149 (373)
T ss_pred cceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceee--eeEEEE-cc---ceEEEEeccc
Confidence 110 00011 1346788876532 45678999999999887775322110 000000 00 00111 1110
Q ss_pred C---CCCe--EEEEEEecCCCCCCcccceecCCCCCeEEEEEc------CCCCeeecCCCCCcceecCCceEECceEEEE
Q 046476 149 S---SRDY--KVLNISNKHTTNSSSYAWMIDNHGTPECEIFTL------GTTSWRKIDAPPSRIHFRRQGLCANGFIHWI 217 (376)
Q Consensus 149 ~---~~~y--kVv~~~~~~~~~~~~~~~~~~~~~~~~~~vys~------~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl 217 (376)
. .-.| +++... ...++ ....-+-|+.- +.++|..++... .....-++++|.+|-+
T Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~----------~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~---~~~~DIi~~kGkfYAv 215 (373)
T PLN03215 150 RRETRPGYQRSALVKV-KEGDN----------HRDGVLGIGRDGKINYWDGNVLKALKQMG---YHFSDIIVHKGQTYAL 215 (373)
T ss_pred ccccccceeEEEEEEe-ecCCC----------cceEEEEEeecCcEeeecCCeeeEccCCC---ceeeEEEEECCEEEEE
Confidence 0 0012 222221 10000 00011111111 136787775421 1256678999999998
Q ss_pred EeCCCCCCCEEEEEEcCCceeEEEeCC-----C-cc-cCcceeEecCCeEEEEEecCCC-------------CCCeEEEE
Q 046476 218 ITNPRKTKPVLAVFDVKEEKFDIVKLP-----D-EV-RKHHDLIQAEEKLGVLDCDDFR-------------SKNKIRVW 277 (376)
Q Consensus 218 ~~~~~~~~~~il~fDl~~e~~~~i~~P-----~-~~-~~~~~L~~~~g~L~~~~~~~~~-------------~~~~~~IW 277 (376)
.. .+.+.++|..-+ ...+..+ . .. .....|+++.|.|.+|...... ....++|+
T Consensus 216 D~-----~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vf 289 (373)
T PLN03215 216 DS-----IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVY 289 (373)
T ss_pred cC-----CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEE
Confidence 55 567777774322 2222111 1 11 2356799999999999874210 12468999
Q ss_pred EEccCCCCCCCceeEEEEEeecccccccCcEeEEEc-------cCCcEEEEecccCCCcEEEEEeCCCCcEEEEE
Q 046476 278 ILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNS-------NNGEILLTEYKSSLVSRVFIYDLKTQERRAIK 345 (376)
Q Consensus 278 ~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~-------~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~ 345 (376)
.++. +...|+++.+ ++...+.++....+++. ..+-|+|.. +....+||++.++..-+.
T Consensus 290 klD~----~~~~WveV~s-Lgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtd-----d~~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 290 KFDD----ELAKWMEVKT-LGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTE-----DTMPKVFKLDNGNGSSIE 354 (373)
T ss_pred EEcC----CCCcEEEecc-cCCeEEEEECCccEEEecCCCCCccCCEEEEEC-----CCcceEEECCCCCccceE
Confidence 9985 4578999999 77665522211222111 134566764 677889999999866553
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.00 E-value=3.9e-08 Score=98.70 Aligned_cols=208 Identities=10% Similarity=0.070 Sum_probs=127.6
Q ss_pred cEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeE
Q 046476 102 FEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPEC 181 (376)
Q Consensus 102 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (376)
..+..+||.+++|..+|+.+..+. .......+ + +|..+..... ......+
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~--------------~~~~~~~~---g--~IYviGG~~~-----------~~~~~sv 369 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRC--------------RFSLAVID---D--TIYAIGGQNG-----------TNVERTI 369 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhh--------------ceeEEEEC---C--EEEEECCcCC-----------CCCCceE
Confidence 357889999999999998876541 11111112 1 4444433211 1124579
Q ss_pred EEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCC-------------------CCCEEEEEEcCCceeEEEe
Q 046476 182 EIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRK-------------------TKPVLAVFDVKEEKFDIVK 242 (376)
Q Consensus 182 ~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------~~~~il~fDl~~e~~~~i~ 242 (376)
++|+..+++|..++..+ ........+.++|.+|.++..... ....+.+||+++++|..++
T Consensus 370 e~Ydp~~~~W~~~~~mp-~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~ 448 (557)
T PHA02713 370 ECYTMGDDKWKMLPDMP-IALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP 448 (557)
T ss_pred EEEECCCCeEEECCCCC-cccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence 99999999999988764 222245677889999999863110 0246999999999999875
Q ss_pred C-CCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCC-CceeEEEEEeecccccccCcEeEEEccCCcEEE
Q 046476 243 L-PDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGG-EVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILL 320 (376)
Q Consensus 243 ~-P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~-~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~ 320 (376)
. |.. .....++.++|+|+++....+.....-.+-..+. +. ..|+.... ++.... ...+++ -+|.|++
T Consensus 449 ~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp----~~~~~W~~~~~-m~~~r~----~~~~~~-~~~~iyv 517 (557)
T PHA02713 449 NFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT----NTYNGWELITT-TESRLS----ALHTIL-HDNTIMM 517 (557)
T ss_pred CCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecC----CCCCCeeEccc-cCcccc----cceeEE-ECCEEEE
Confidence 3 332 3456788999999999865211111112344443 34 57998766 443211 122332 2577776
Q ss_pred EecccCCCcEEEEEeCCCCcEEEEEECCcccc
Q 046476 321 TEYKSSLVSRVFIYDLKTQERRAIKIPPVTEQ 352 (376)
Q Consensus 321 ~~~~~~~~~~v~~ydl~t~~~~~v~~~~~~~~ 352 (376)
.-- ..+...+-.||++|++|..+.-+...+.
T Consensus 518 ~Gg-~~~~~~~e~yd~~~~~W~~~~~~~~~~~ 548 (557)
T PHA02713 518 LHC-YESYMLQDTFNVYTYEWNHICHQHSNSY 548 (557)
T ss_pred Eee-ecceeehhhcCcccccccchhhhcCCce
Confidence 541 1122368899999999998865443333
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.82 E-value=2.1e-09 Score=70.29 Aligned_cols=42 Identities=14% Similarity=0.437 Sum_probs=36.3
Q ss_pred CCCChHHHHHHHccCCcccccccccccccchhhhcCCchhHHHH
Q 046476 7 DTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVS 50 (376)
Q Consensus 7 ~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~~~~~~F~~~ 50 (376)
..||+||+.+||+.||++++.++.+|||+|++++.++ .+-+.
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~--~lW~~ 43 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN--SLWRR 43 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC--CHHHH
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh--hhhhh
Confidence 5799999999999999999999999999999999988 65443
No 7
>PHA03098 kelch-like protein; Provisional
Probab=98.79 E-value=7.9e-07 Score=89.34 Aligned_cols=201 Identities=12% Similarity=0.104 Sum_probs=123.7
Q ss_pred EEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeEE
Q 046476 103 EILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECE 182 (376)
Q Consensus 103 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (376)
.++.+||.|++|..+|+.+..+. . .....+ + + ++..+..... ......++
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~-----~-------~~~~~~--~---~--~lyv~GG~~~-----------~~~~~~v~ 361 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRK-----N-------PGVTVF--N---N--RIYVIGGIYN-----------SISLNTVE 361 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccc-----c-------ceEEEE--C---C--EEEEEeCCCC-----------CEecceEE
Confidence 67899999999999998765431 0 111111 1 1 2434332211 12256789
Q ss_pred EEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCC--CCCEEEEEEcCCceeEEEeC-CCcccCcceeEecCCe
Q 046476 183 IFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRK--TKPVLAVFDVKEEKFDIVKL-PDEVRKHHDLIQAEEK 259 (376)
Q Consensus 183 vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fDl~~e~~~~i~~-P~~~~~~~~L~~~~g~ 259 (376)
+|+..+++|+..+..+ ........+.++|.+|-++..... ....+..||+.+++|..++. |.. ......+..+|+
T Consensus 362 ~yd~~~~~W~~~~~lp-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~ 439 (534)
T PHA03098 362 SWKPGESKWREEPPLI-FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGGCAIYHDGK 439 (534)
T ss_pred EEcCCCCceeeCCCcC-cCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCceEEEECCE
Confidence 9999999999987664 212255667889999999863211 13579999999999998753 433 234456778999
Q ss_pred EEEEEecCCCCC--CeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEeccc--CCCcEEEEEe
Q 046476 260 LGVLDCDDFRSK--NKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKS--SLVSRVFIYD 335 (376)
Q Consensus 260 L~~~~~~~~~~~--~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~--~~~~~v~~yd 335 (376)
|+++........ ..-.+|+.+. ....|+++.. ++. +. .. ..+++. ++.|++..-.. .....+..||
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~----~~~~W~~~~~-~~~-~r-~~--~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd 509 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNP----VTNKWTELSS-LNF-PR-IN--ASLCIF-NNKIYVVGGDKYEYYINEIEVYD 509 (534)
T ss_pred EEEECCccCCCCCcccceEEEecC----CCCceeeCCC-CCc-cc-cc--ceEEEE-CCEEEEEcCCcCCcccceeEEEe
Confidence 999886521111 1123777765 3578998654 332 11 11 223322 56766554110 1135799999
Q ss_pred CCCCcEEEEE
Q 046476 336 LKTQERRAIK 345 (376)
Q Consensus 336 l~t~~~~~v~ 345 (376)
+++++|+.+.
T Consensus 510 ~~~~~W~~~~ 519 (534)
T PHA03098 510 DKTNTWTLFC 519 (534)
T ss_pred CCCCEEEecC
Confidence 9999998764
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=98.78 E-value=7.5e-07 Score=88.02 Aligned_cols=188 Identities=10% Similarity=0.063 Sum_probs=118.4
Q ss_pred cEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeE
Q 046476 102 FEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPEC 181 (376)
Q Consensus 102 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (376)
.....+||.+++|..+|+++..+. . .... ..+ + ++..+..... ...+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~------~------~~~v--~~~---~--~iYviGG~~~--------------~~sv 333 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRL------Y------ASGV--PAN---N--KLYVVGGLPN--------------PTSV 333 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhh------c------ceEE--EEC---C--EEEEECCcCC--------------CCce
Confidence 356778999999999998866441 0 0111 111 1 3444432211 2458
Q ss_pred EEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcccCcceeEecCCeEE
Q 046476 182 EIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLG 261 (376)
Q Consensus 182 ~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~~g~L~ 261 (376)
+.|+..+++|..+++.+ ........+.++|.+|.++... +....+.+||+++++|+.++.++........+..+|+|+
T Consensus 334 e~ydp~~n~W~~~~~l~-~~r~~~~~~~~~g~IYviGG~~-~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IY 411 (480)
T PHA02790 334 ERWFHGDAAWVNMPSLL-KPRCNPAVASINNVIYVIGGHS-ETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLF 411 (480)
T ss_pred EEEECCCCeEEECCCCC-CCCcccEEEEECCEEEEecCcC-CCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEE
Confidence 99999999999987764 2222566788999999998732 123568899999999998865443334456778899999
Q ss_pred EEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEeccc--CCCcEEEEEeCCCC
Q 046476 262 VLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKS--SLVSRVFIYDLKTQ 339 (376)
Q Consensus 262 ~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~--~~~~~v~~ydl~t~ 339 (376)
++... .++. +. +...|+.... ++. +. ....+++ -+|.|++.--.- .....+-.||++++
T Consensus 412 v~GG~-------~e~y---dp---~~~~W~~~~~-m~~-~r---~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 412 LVGRN-------AEFY---CE---SSNTWTLIDD-PIY-PR---DNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EECCc-------eEEe---cC---CCCcEeEcCC-CCC-Cc---cccEEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 98742 2222 23 3578998655 332 11 1123333 367777654110 01256899999999
Q ss_pred cEEE
Q 046476 340 ERRA 343 (376)
Q Consensus 340 ~~~~ 343 (376)
+|..
T Consensus 473 ~W~~ 476 (480)
T PHA02790 473 SWNI 476 (480)
T ss_pred eEEe
Confidence 9964
No 9
>PLN02153 epithiospecifier protein
Probab=98.74 E-value=1.4e-06 Score=82.35 Aligned_cols=212 Identities=10% Similarity=0.059 Sum_probs=121.0
Q ss_pred cEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeE
Q 046476 102 FEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPEC 181 (376)
Q Consensus 102 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (376)
+.++++||.+++|..+|+...... ..... .....++ + +++.+..... ......+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~---~~~~~-----~~~~~~~-----~--~iyv~GG~~~-----------~~~~~~v 103 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPR---ISCLG-----VRMVAVG-----T--KLYIFGGRDE-----------KREFSDF 103 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCC---CccCc-----eEEEEEC-----C--EEEEECCCCC-----------CCccCcE
Confidence 368899999999999886532110 00000 0111111 1 3444433211 1123578
Q ss_pred EEEEcCCCCeeecCCCC----CcceecCCceEECceEEEEEeCCCC-------CCCEEEEEEcCCceeEEEeCCC---cc
Q 046476 182 EIFTLGTTSWRKIDAPP----SRIHFRRQGLCANGFIHWIITNPRK-------TKPVLAVFDVKEEKFDIVKLPD---EV 247 (376)
Q Consensus 182 ~vys~~t~~Wr~~~~~~----~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~il~fDl~~e~~~~i~~P~---~~ 247 (376)
++|+..+++|+.++... |........+..+|.+|.++..... .-..+.+||+++.+|..++.+. ..
T Consensus 104 ~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~ 183 (341)
T PLN02153 104 YSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEK 183 (341)
T ss_pred EEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCC
Confidence 99999999999876531 2112245567889999998763211 0135889999999999876432 11
Q ss_pred cCcceeEecCCeEEEEEecCC----CC---CCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEE
Q 046476 248 RKHHDLIQAEEKLGVLDCDDF----RS---KNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILL 320 (376)
Q Consensus 248 ~~~~~L~~~~g~L~~~~~~~~----~~---~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~ 320 (376)
.....++..+|+|+++..... .. ...-+|++++- +...|+++.. .+..+.. +......+. ++.|++
T Consensus 184 r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~----~~~~W~~~~~-~g~~P~~-r~~~~~~~~-~~~iyv 256 (341)
T PLN02153 184 RGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP----ASGKWTEVET-TGAKPSA-RSVFAHAVV-GKYIII 256 (341)
T ss_pred CCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc----CCCcEEeccc-cCCCCCC-cceeeeEEE-CCEEEE
Confidence 334457788999998864310 00 11224676664 3578999765 3322220 111222222 455554
Q ss_pred Eeccc-----------CCCcEEEEEeCCCCcEEEEEE
Q 046476 321 TEYKS-----------SLVSRVFIYDLKTQERRAIKI 346 (376)
Q Consensus 321 ~~~~~-----------~~~~~v~~ydl~t~~~~~v~~ 346 (376)
.--.. ...+.++.||+++++|+.+..
T Consensus 257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 257 FGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred ECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 43110 012479999999999998853
No 10
>PHA02713 hypothetical protein; Provisional
Probab=98.73 E-value=1.6e-06 Score=87.17 Aligned_cols=203 Identities=11% Similarity=0.107 Sum_probs=121.3
Q ss_pred EEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeEE
Q 046476 103 EILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECE 182 (376)
Q Consensus 103 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (376)
.+..+||.+++|..+++.+..+. . ..... .+ + +|..+..... +......++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-------~-----~~~a~--l~----~-~IYviGG~~~----------~~~~~~~v~ 323 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-------N-----YASAI--VD----N-EIIIAGGYNF----------NNPSLNKVY 323 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-------c-----eEEEE--EC----C-EEEEEcCCCC----------CCCccceEE
Confidence 45678999999999988765431 0 01111 11 1 3444433210 011246799
Q ss_pred EEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCC-CCCEEEEEEcCCceeEEEeCCCcccCcceeEecCCeEE
Q 046476 183 IFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRK-TKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLG 261 (376)
Q Consensus 183 vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~~g~L~ 261 (376)
.|+..++.|..++..+ ........+.++|.+|-++..... ....+.+||+.+++|..++..+........+.++|+|+
T Consensus 324 ~Yd~~~n~W~~~~~m~-~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IY 402 (557)
T PHA02713 324 KINIENKIHVELPPMI-KNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIY 402 (557)
T ss_pred EEECCCCeEeeCCCCc-chhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEE
Confidence 9999999999887764 222256678899999999873211 13568999999999998753222234456778899999
Q ss_pred EEEecCCCC-----------------CCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecc
Q 046476 262 VLDCDDFRS-----------------KNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYK 324 (376)
Q Consensus 262 ~~~~~~~~~-----------------~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~ 324 (376)
++....... ...-.+...+. +...|+.+.. ++.... . ..+++ .+|.|++..-.
T Consensus 403 viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP----~td~W~~v~~-m~~~r~--~--~~~~~-~~~~IYv~GG~ 472 (557)
T PHA02713 403 IIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDT----VNNIWETLPN-FWTGTI--R--PGVVS-HKDDIYVVCDI 472 (557)
T ss_pred EEeCCCcccccccccccccccccccccccceEEEECC----CCCeEeecCC-CCcccc--c--CcEEE-ECCEEEEEeCC
Confidence 998652100 00122444443 3567987655 332111 1 22332 35777765410
Q ss_pred cC---CCcEEEEEeCCC-CcEEEEE
Q 046476 325 SS---LVSRVFIYDLKT-QERRAIK 345 (376)
Q Consensus 325 ~~---~~~~v~~ydl~t-~~~~~v~ 345 (376)
-. ....+..||+++ ++|+.+.
T Consensus 473 ~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 473 KDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred CCCCccceeEEEecCCCCCCeeEcc
Confidence 00 113478999999 8998775
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.69 E-value=1.8e-06 Score=86.70 Aligned_cols=199 Identities=11% Similarity=0.063 Sum_probs=128.4
Q ss_pred cEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeE
Q 046476 102 FEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPEC 181 (376)
Q Consensus 102 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (376)
+....+||.+++|..+|++...+ ..++.+.- ..++..+..... ......+
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R---------------~~~~v~~l----~g~iYavGG~dg-----------~~~l~sv 398 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKR---------------SDFGVAVL----DGKLYAVGGFDG-----------EKSLNSV 398 (571)
T ss_pred ceEEEecCCCCceeccCCccCcc---------------ccceeEEE----CCEEEEEecccc-----------ccccccE
Confidence 46889999999999999987765 22222211 123334333221 2335689
Q ss_pred EEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCC--CCCEEEEEEcCCceeEEEe-CCCcccCcceeEecCC
Q 046476 182 EIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRK--TKPVLAVFDVKEEKFDIVK-LPDEVRKHHDLIQAEE 258 (376)
Q Consensus 182 ~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fDl~~e~~~~i~-~P~~~~~~~~L~~~~g 258 (376)
|.|+..+++|..++..+. .......+.++|.+|-++..... .-..+.+||+.+++|+.++ ++.. .....++.++|
T Consensus 399 E~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~g~a~~~~ 476 (571)
T KOG4441|consen 399 ECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGFGVAVLNG 476 (571)
T ss_pred EEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccceEEEECC
Confidence 999999999999987743 22367788999999999873211 2478999999999999874 3333 45566899999
Q ss_pred eEEEEEecCC-CCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEE-ccCCcEEEEec--ccCCCcEEEEE
Q 046476 259 KLGVLDCDDF-RSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSN-SNNGEILLTEY--KSSLVSRVFIY 334 (376)
Q Consensus 259 ~L~~~~~~~~-~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~-~~~g~il~~~~--~~~~~~~v~~y 334 (376)
+|+++....+ ....+ |=..+. ....|+.+.. +.... ...++ ..++.++.+-- ....-..+-.|
T Consensus 477 ~iYvvGG~~~~~~~~~--VE~ydp----~~~~W~~v~~-m~~~r------s~~g~~~~~~~ly~vGG~~~~~~l~~ve~y 543 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSS--VERYDP----ETNQWTMVAP-MTSPR------SAVGVVVLGGKLYAVGGFDGNNNLNTVECY 543 (571)
T ss_pred EEEEECCccCCCccce--EEEEcC----CCCceeEccc-Ccccc------ccccEEEECCEEEEEecccCccccceeEEc
Confidence 9999988732 11122 222232 4678999854 33211 22221 22455555431 11234578999
Q ss_pred eCCCCcEEEEE
Q 046476 335 DLKTQERRAIK 345 (376)
Q Consensus 335 dl~t~~~~~v~ 345 (376)
|+++++|+.+.
T Consensus 544 dp~~d~W~~~~ 554 (571)
T KOG4441|consen 544 DPETDTWTEVT 554 (571)
T ss_pred CCCCCceeeCC
Confidence 99999999763
No 12
>PLN02193 nitrile-specifier protein
Probab=98.67 E-value=3.2e-06 Score=83.34 Aligned_cols=160 Identities=12% Similarity=0.091 Sum_probs=102.2
Q ss_pred CCeEEEEEcCCCCeeecCCCC--CcceecCCceEECceEEEEEeCCC-CCCCEEEEEEcCCceeEEEeCCCcc---cCcc
Q 046476 178 TPECEIFTLGTTSWRKIDAPP--SRIHFRRQGLCANGFIHWIITNPR-KTKPVLAVFDVKEEKFDIVKLPDEV---RKHH 251 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~--~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fDl~~e~~~~i~~P~~~---~~~~ 251 (376)
...+++|++.+++|+.+.... |........+..++.+|.++.... .....+.+||+.+.+|..++.|... ....
T Consensus 243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~ 322 (470)
T PLN02193 243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA 322 (470)
T ss_pred CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc
Confidence 467899999999999986542 111224556778999999986321 1134688999999999988654322 3445
Q ss_pred eeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccC-----
Q 046476 252 DLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSS----- 326 (376)
Q Consensus 252 ~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~----- 326 (376)
.++..+|+++++.... ....-++|+++-. +..|+++.. ++..+.. +.....++ -++.|++.--...
T Consensus 323 ~~~~~~gkiyviGG~~--g~~~~dv~~yD~~----t~~W~~~~~-~g~~P~~-R~~~~~~~-~~~~iyv~GG~~~~~~~~ 393 (470)
T PLN02193 323 GLEVVQGKVWVVYGFN--GCEVDDVHYYDPV----QDKWTQVET-FGVRPSE-RSVFASAA-VGKHIVIFGGEIAMDPLA 393 (470)
T ss_pred EEEEECCcEEEEECCC--CCccCceEEEECC----CCEEEEecc-CCCCCCC-cceeEEEE-ECCEEEEECCccCCcccc
Confidence 6777899999887642 1223567888753 578999876 5433320 11122232 2456555431100
Q ss_pred ------CCcEEEEEeCCCCcEEEEEE
Q 046476 327 ------LVSRVFIYDLKTQERRAIKI 346 (376)
Q Consensus 327 ------~~~~v~~ydl~t~~~~~v~~ 346 (376)
....+++||++|++|+.+..
T Consensus 394 ~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 394 HVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ccCccceeccEEEEEcCcCEEEEccc
Confidence 11368999999999998864
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.65 E-value=1.3e-05 Score=75.26 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCCe----eecCCCCCcceecCCceEECceEEEEEeCCC-CCCCEEEEEEcCCceeEEEe-CCCcccCcc
Q 046476 178 TPECEIFTLGTTSW----RKIDAPPSRIHFRRQGLCANGFIHWIITNPR-KTKPVLAVFDVKEEKFDIVK-LPDEVRKHH 251 (376)
Q Consensus 178 ~~~~~vys~~t~~W----r~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fDl~~e~~~~i~-~P~~~~~~~ 251 (376)
...++.|++.++.| +..+..| .......++.++|.+|.++.... .....+.+||+.+++|+.++ +|.......
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp-~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~ 165 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLP-FTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQP 165 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCC-cCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcc
Confidence 46788999999887 5555443 22225667788999999987311 12457999999999999885 564333445
Q ss_pred eeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEE
Q 046476 252 DLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDY 295 (376)
Q Consensus 252 ~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ 295 (376)
.++..+|+|+++.... .....++|+.+- .+..|+++..
T Consensus 166 ~~~~~~~~iYv~GG~~--~~~~~~~~~yd~----~~~~W~~~~~ 203 (323)
T TIGR03548 166 VCVKLQNELYVFGGGS--NIAYTDGYKYSP----KKNQWQKVAD 203 (323)
T ss_pred eEEEECCEEEEEcCCC--CccccceEEEec----CCCeeEECCC
Confidence 5678899999998652 122345677764 3578988654
No 14
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.64 E-value=7.9e-09 Score=65.31 Aligned_cols=39 Identities=28% Similarity=0.566 Sum_probs=36.5
Q ss_pred CChHHHHHHHccCCcccccccccccccchhhhcCCchhHHH
Q 046476 9 VPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIV 49 (376)
Q Consensus 9 LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~~~~~~F~~ 49 (376)
||+|++.+||.+|+++++.++++|||+|+.++.++ .|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~--~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH--DFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh--hhhh
Confidence 79999999999999999999999999999999998 6643
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.63 E-value=1.2e-05 Score=76.19 Aligned_cols=164 Identities=12% Similarity=0.083 Sum_probs=98.1
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCce-EECceEEEEEeCCCC---------------------------------
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQGL-CANGFIHWIITNPRK--------------------------------- 223 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~--------------------------------- 223 (376)
...++.|+..+++|+.++...|........+ .++|.||.++.....
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred cccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 3579999999999999874323222122233 689999999762110
Q ss_pred --CCCEEEEEEcCCceeEEEe-CCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEc-cCCCCCCCceeEEEEEeec
Q 046476 224 --TKPVLAVFDVKEEKFDIVK-LPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILK-DYGRGGGEVWIRRDYVFRF 299 (376)
Q Consensus 224 --~~~~il~fDl~~e~~~~i~-~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~-~~~~g~~~~W~~~~~ii~~ 299 (376)
....+.+||+.+++|+.++ +|........++..+|+|+++...........++|..+ +. ++..|++... ++.
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~---~~~~W~~~~~-m~~ 239 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG---GKLEWNKLPP-LPP 239 (346)
T ss_pred cCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecC---CCceeeecCC-CCC
Confidence 0157999999999999984 44322345567888999999987532222344566654 22 3568998766 542
Q ss_pred ccccccC--cEeEEEccCCcEEEEeccc---------------C----CCcEEEEEeCCCCcEEEEE
Q 046476 300 DTIMFRP--PIPVSNSNNGEILLTEYKS---------------S----LVSRVFIYDLKTQERRAIK 345 (376)
Q Consensus 300 ~~~~~~~--~~~v~~~~~g~il~~~~~~---------------~----~~~~v~~ydl~t~~~~~v~ 345 (376)
....... ....++.-++.|++.--.. + .-..+-+||+++++|+.+.
T Consensus 240 ~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 240 PKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 1110000 0111222367776653100 0 0025779999999998764
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.62 E-value=1.3e-08 Score=66.89 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=36.2
Q ss_pred CCCChHHHHHHHccCCcccccccccccccchhhhcCCchhHHHHH
Q 046476 7 DTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSF 51 (376)
Q Consensus 7 ~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~~~~~~F~~~~ 51 (376)
..||+|++.+||.+|+++++++++.|||+|++++.++ .+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~--~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP--RLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH--HHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC--CccHHH
Confidence 4699999999999999999999999999999999998 775554
No 17
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.62 E-value=3.4e-06 Score=84.67 Aligned_cols=202 Identities=15% Similarity=0.094 Sum_probs=130.5
Q ss_pred cEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeE
Q 046476 102 FEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPEC 181 (376)
Q Consensus 102 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (376)
..+..+||.+++|..+.+++..+. ..+...-. + +|..+..... +......+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~---------------~~~~~~~~--~--~lYv~GG~~~----------~~~~l~~v 351 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC---------------RVGVAVLN--G--KLYVVGGYDS----------GSDRLSSV 351 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc---------------cccEEEEC--C--EEEEEccccC----------CCcccceE
Confidence 456788999999999988876551 11111111 1 3444332220 12346899
Q ss_pred EEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCC-CCCCCEEEEEEcCCceeEEEe-CCCcccCcceeEecCCe
Q 046476 182 EIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNP-RKTKPVLAVFDVKEEKFDIVK-LPDEVRKHHDLIQAEEK 259 (376)
Q Consensus 182 ~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~-~~~~~~il~fDl~~e~~~~i~-~P~~~~~~~~L~~~~g~ 259 (376)
+.|++.++.|..+++.. ........+.++|.+|-++... ...-..+-.||+.+++|..+. ++. .......++++|+
T Consensus 352 e~YD~~~~~W~~~a~M~-~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMN-TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGK 429 (571)
T ss_pred EEecCCCCceeccCCcc-CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCE
Confidence 99999999999987763 2222677789999999999842 112567999999999999885 444 3456678899999
Q ss_pred EEEEEecCCCC--CCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEeccc--CCCcEEEEEe
Q 046476 260 LGVLDCDDFRS--KNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKS--SLVSRVFIYD 335 (376)
Q Consensus 260 L~~~~~~~~~~--~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~--~~~~~v~~yd 335 (376)
||++....... -.+++.. + . ....|..... ++... ....+++. ++.|+.+.-.- ..-..|-.||
T Consensus 430 iYi~GG~~~~~~~l~sve~Y--D-P---~t~~W~~~~~-M~~~R----~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECY--D-P---ETNTWTLIAP-MNTRR----SGFGVAVL-NGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEEEcCcCCCccccceEEEE--c-C---CCCceeecCC-ccccc----ccceEEEE-CCEEEEECCccCCCccceEEEEc
Confidence 99999863111 1223322 2 2 4678999765 44222 12344443 56666654110 1234588999
Q ss_pred CCCCcEEEEEE
Q 046476 336 LKTQERRAIKI 346 (376)
Q Consensus 336 l~t~~~~~v~~ 346 (376)
+++++|..+.-
T Consensus 498 p~~~~W~~v~~ 508 (571)
T KOG4441|consen 498 PETNQWTMVAP 508 (571)
T ss_pred CCCCceeEccc
Confidence 99999998863
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.43 E-value=1.9e-05 Score=75.63 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCceE-ECceEEEEEeCCCC---------------------------------
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQGLC-ANGFIHWIITNPRK--------------------------------- 223 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~--------------------------------- 223 (376)
...+++|+..+++|+.++...|........+. .+|.||.++.....
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 36799999999999998753232222233444 79999999863110
Q ss_pred --CCCEEEEEEcCCceeEEEe-CCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEc-cCCCCCCCceeEEEEEeec
Q 046476 224 --TKPVLAVFDVKEEKFDIVK-LPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILK-DYGRGGGEVWIRRDYVFRF 299 (376)
Q Consensus 224 --~~~~il~fDl~~e~~~~i~-~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~-~~~~g~~~~W~~~~~ii~~ 299 (376)
....+.+||+.+++|..+. +|........++..+++|+++...........++|..+ +. ++..|.++.. ++.
T Consensus 185 ~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~---~~~~W~~~~~-~p~ 260 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG---NNLKWQKLPD-LPP 260 (376)
T ss_pred cCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecC---CCcceeecCC-CCC
Confidence 0246999999999999874 45322344567778999999987522223456677654 22 3578998776 543
Q ss_pred ccc-ccc-Cc-EeEEEccCCcEEEEeccc-CC------------------CcEEEEEeCCCCcEEEEE
Q 046476 300 DTI-MFR-PP-IPVSNSNNGEILLTEYKS-SL------------------VSRVFIYDLKTQERRAIK 345 (376)
Q Consensus 300 ~~~-~~~-~~-~~v~~~~~g~il~~~~~~-~~------------------~~~v~~ydl~t~~~~~v~ 345 (376)
... ... .. ...+...++.|++.--.- .. ...+-.||+++++|+.+.
T Consensus 261 ~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 261 APGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 211 000 00 111222356666543100 00 013457999999998764
No 19
>PHA03098 kelch-like protein; Provisional
Probab=98.30 E-value=5.1e-05 Score=76.28 Aligned_cols=156 Identities=13% Similarity=0.003 Sum_probs=99.1
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCC-CCCCEEEEEEcCCceeEEEe-CCCcccCcceeEe
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPR-KTKPVLAVFDVKEEKFDIVK-LPDEVRKHHDLIQ 255 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fDl~~e~~~~i~-~P~~~~~~~~L~~ 255 (376)
...+..|+..+++|..++..+. .......+.++|.+|.++.... .....+..||+.+.+|+.++ +|.. ......+.
T Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~ 387 (534)
T PHA03098 310 VNSVVSYDTKTKSWNKVPELIY-PRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-RYNPCVVN 387 (534)
T ss_pred eccEEEEeCCCCeeeECCCCCc-ccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-CccceEEE
Confidence 3578999999999998876641 1225667888999999987321 12456889999999999874 3433 34556678
Q ss_pred cCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccC-----CCcE
Q 046476 256 AEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSS-----LVSR 330 (376)
Q Consensus 256 ~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~-----~~~~ 330 (376)
.+|+|+++..........-.++..+- .+..|.+... ++. +. ..... +..++.|++..-... .-..
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~----~t~~W~~~~~-~p~-~r---~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~ 457 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSL----NTNKWSKGSP-LPI-SH---YGGCA-IYHDGKIYVIGGISYIDNIKVYNI 457 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeC----CCCeeeecCC-CCc-cc---cCceE-EEECCEEEEECCccCCCCCcccce
Confidence 89999999874211122234566654 3568988654 332 11 11222 223566665431000 0234
Q ss_pred EEEEeCCCCcEEEEE
Q 046476 331 VFIYDLKTQERRAIK 345 (376)
Q Consensus 331 v~~ydl~t~~~~~v~ 345 (376)
+..||+++++|+.+.
T Consensus 458 v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 458 VESYNPVTNKWTELS 472 (534)
T ss_pred EEEecCCCCceeeCC
Confidence 999999999999874
No 20
>PLN02193 nitrile-specifier protein
Probab=98.27 E-value=0.00012 Score=72.39 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=98.2
Q ss_pred CeEEEEEcCCCCeeecCCCC--Cccee-cCCceEECceEEEEEeCCC-CCCCEEEEEEcCCceeEEEeCC---CcccCcc
Q 046476 179 PECEIFTLGTTSWRKIDAPP--SRIHF-RRQGLCANGFIHWIITNPR-KTKPVLAVFDVKEEKFDIVKLP---DEVRKHH 251 (376)
Q Consensus 179 ~~~~vys~~t~~Wr~~~~~~--~~~~~-~~~~v~~~G~lywl~~~~~-~~~~~il~fDl~~e~~~~i~~P---~~~~~~~ 251 (376)
..+++|+..+++|..++... |.... ....+.+++.+|.++.... .....+.+||+.+.+|+.++.. +......
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 272 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence 56899999999999875431 22112 3456788999999886321 1135688999999999987432 1113445
Q ss_pred eeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEec-ccCCCcE
Q 046476 252 DLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEY-KSSLVSR 330 (376)
Q Consensus 252 ~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~-~~~~~~~ 330 (376)
.++..+++|+++..... ....-+++.++- ....|+.... .+..+. -+....+++. +++|++.-- .......
T Consensus 273 ~~~~~~~~iYv~GG~~~-~~~~~~~~~yd~----~t~~W~~~~~-~~~~~~-~R~~~~~~~~-~gkiyviGG~~g~~~~d 344 (470)
T PLN02193 273 SMAADEENVYVFGGVSA-TARLKTLDSYNI----VDKKWFHCST-PGDSFS-IRGGAGLEVV-QGKVWVVYGFNGCEVDD 344 (470)
T ss_pred EEEEECCEEEEECCCCC-CCCcceEEEEEC----CCCEEEeCCC-CCCCCC-CCCCcEEEEE-CCcEEEEECCCCCccCc
Confidence 66778999999876521 122235666664 3568987543 111111 1111233333 566665431 0012367
Q ss_pred EEEEeCCCCcEEEEEEC
Q 046476 331 VFIYDLKTQERRAIKIP 347 (376)
Q Consensus 331 v~~ydl~t~~~~~v~~~ 347 (376)
+..||+++++|+.+...
T Consensus 345 v~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 345 VHYYDPVQDKWTQVETF 361 (470)
T ss_pred eEEEECCCCEEEEeccC
Confidence 99999999999988643
No 21
>PLN02153 epithiospecifier protein
Probab=98.26 E-value=0.00014 Score=68.69 Aligned_cols=162 Identities=12% Similarity=0.103 Sum_probs=98.2
Q ss_pred CCeEEEEEcCCCCeeecCCCC--Cccee-cCCceEECceEEEEEeCCCC-CCCEEEEEEcCCceeEEEeC------CCcc
Q 046476 178 TPECEIFTLGTTSWRKIDAPP--SRIHF-RRQGLCANGFIHWIITNPRK-TKPVLAVFDVKEEKFDIVKL------PDEV 247 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~--~~~~~-~~~~v~~~G~lywl~~~~~~-~~~~il~fDl~~e~~~~i~~------P~~~ 247 (376)
...+++|+..++.|...+... |.... ....+.+++.+|-++..... ....+.+||+.+.+|..++. |..
T Consensus 49 ~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~- 127 (341)
T PLN02153 49 DKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA- 127 (341)
T ss_pred eCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCC-
Confidence 357999999999999876542 22112 34567889999999863211 12468999999999998753 221
Q ss_pred cCcceeEecCCeEEEEEecCCCC----C-CeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEe
Q 046476 248 RKHHDLIQAEEKLGVLDCDDFRS----K-NKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTE 322 (376)
Q Consensus 248 ~~~~~L~~~~g~L~~~~~~~~~~----~-~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~ 322 (376)
......+..+++|+++....... . ..-.||+.+- .+..|..+.. .+..+. -+....+++. +++|++.-
T Consensus 128 R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~----~~~~W~~l~~-~~~~~~-~r~~~~~~~~-~~~iyv~G 200 (341)
T PLN02153 128 RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI----ADGKWVQLPD-PGENFE-KRGGAGFAVV-QGKIWVVY 200 (341)
T ss_pred ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC----CCCeEeeCCC-CCCCCC-CCCcceEEEE-CCeEEEEe
Confidence 33556678899999987752110 0 1125676664 3568997544 321111 0111223332 45655432
Q ss_pred cc----------cCCCcEEEEEeCCCCcEEEEEEC
Q 046476 323 YK----------SSLVSRVFIYDLKTQERRAIKIP 347 (376)
Q Consensus 323 ~~----------~~~~~~v~~ydl~t~~~~~v~~~ 347 (376)
-. ......+..||+++++|+++...
T Consensus 201 G~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 201 GFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 00 00135799999999999988643
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=98.10 E-value=0.00015 Score=71.87 Aligned_cols=146 Identities=8% Similarity=0.005 Sum_probs=98.0
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcccCcceeEecC
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAE 257 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~~ 257 (376)
...++.|+..++.|..++..+. .......+.+||.+|-++.. .....+-.||+.+++|..++..+........+.++
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~~~~~iYviGG~--~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~ 362 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNS-PRLYASGVPANNKLYVVGGL--PNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASIN 362 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCc-hhhcceEEEECCEEEEECCc--CCCCceEEEECCCCeEEECCCCCCCCcccEEEEEC
Confidence 4678899999999999987742 12245667899999999873 22356889999999999875322223456778999
Q ss_pred CeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCC
Q 046476 258 EKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLK 337 (376)
Q Consensus 258 g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~ 337 (376)
|+|+++.... .....++.+ + . ....|+.... ++. +. . ...++.-+|.|++.- +.+-.||++
T Consensus 363 g~IYviGG~~-~~~~~ve~y--d-p---~~~~W~~~~~-m~~-~r---~-~~~~~~~~~~IYv~G------G~~e~ydp~ 423 (480)
T PHA02790 363 NVIYVIGGHS-ETDTTTEYL--L-P---NHDQWQFGPS-TYY-PH---Y-KSCALVFGRRLFLVG------RNAEFYCES 423 (480)
T ss_pred CEEEEecCcC-CCCccEEEE--e-C---CCCEEEeCCC-CCC-cc---c-cceEEEECCEEEEEC------CceEEecCC
Confidence 9999998752 122344444 2 2 3568988544 331 21 1 122223467777654 246789999
Q ss_pred CCcEEEEE
Q 046476 338 TQERRAIK 345 (376)
Q Consensus 338 t~~~~~v~ 345 (376)
+++|+.+.
T Consensus 424 ~~~W~~~~ 431 (480)
T PHA02790 424 SNTWTLID 431 (480)
T ss_pred CCcEeEcC
Confidence 99999775
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.04 E-value=0.00074 Score=63.32 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=81.3
Q ss_pred cEEEEEecCCcce----ecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCC
Q 046476 102 FEILMRNVVTQEI----IDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHG 177 (376)
Q Consensus 102 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~ 177 (376)
..++.+|+.+++| ..+|+.+..+. ...+..++. +|..+..... ...
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~--------------~~~~~~~~~-----~iYv~GG~~~-----------~~~ 137 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFE--------------NGSACYKDG-----TLYVGGGNRN-----------GKP 137 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCcc--------------CceEEEECC-----EEEEEeCcCC-----------Ccc
Confidence 4677889999887 66777665431 111111221 3444433211 112
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeEEEeCCC---cc---cCcc
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPD---EV---RKHH 251 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~---~~---~~~~ 251 (376)
...+++|+..+++|..++..+.........+.++|.+|.++.........+.+||+++++|+.++... .. ....
T Consensus 138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~ 217 (323)
T TIGR03548 138 SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAA 217 (323)
T ss_pred CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceecccee
Confidence 46799999999999998765321122344568899999998621111234689999999999885321 11 1233
Q ss_pred eeEecCCeEEEEEec
Q 046476 252 DLIQAEEKLGVLDCD 266 (376)
Q Consensus 252 ~L~~~~g~L~~~~~~ 266 (376)
.++..+++|+++...
T Consensus 218 ~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 218 SIKINESLLLCIGGF 232 (323)
T ss_pred EEEECCCEEEEECCc
Confidence 345568899888764
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.73 E-value=0.002 Score=60.02 Aligned_cols=225 Identities=13% Similarity=0.123 Sum_probs=123.8
Q ss_pred CcEEEEEecCCcceecC--CCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCC
Q 046476 101 GFEILMRNVVTQEIIDL--PKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGT 178 (376)
Q Consensus 101 ~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~ 178 (376)
.+.+|.+|--+.+|+.+ |.+|..+ +.+.....|+. ++.++.-....++. ..=.+.
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pR---------------sshq~va~~s~----~l~~fGGEfaSPnq----~qF~HY 153 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPR---------------SSHQAVAVPSN----ILWLFGGEFASPNQ----EQFHHY 153 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCC---------------ccceeEEeccC----eEEEeccccCCcch----hhhhhh
Confidence 35789999999999886 4333333 22333333322 22222111111000 001224
Q ss_pred CeEEEEEcCCCCeeecCCCC-CcceecCCceEECceEEEEEe-CC--CC--CCCEEEEEEcCCceeEEEeCCCcc---cC
Q 046476 179 PECEIFTLGTTSWRKIDAPP-SRIHFRRQGLCANGFIHWIIT-NP--RK--TKPVLAVFDVKEEKFDIVKLPDEV---RK 249 (376)
Q Consensus 179 ~~~~vys~~t~~Wr~~~~~~-~~~~~~~~~v~~~G~lywl~~-~~--~~--~~~~il~fDl~~e~~~~i~~P~~~---~~ 249 (376)
....+|++.|+.|..+...- |.....+..|.....+.-++. +. .. +-+-+.+||+++=+|+.+..+... ..
T Consensus 154 kD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRS 233 (521)
T KOG1230|consen 154 KDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRS 233 (521)
T ss_pred hheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCC
Confidence 56778999999999875442 111111222222211111111 00 00 023389999999999998654321 34
Q ss_pred cceeEec-CCeEEEEEecC--------CCCCCeEEEEEEccC-CCCCCCceeEEEEEeecccccccCcEeEEEccCCcEE
Q 046476 250 HHDLIQA-EEKLGVLDCDD--------FRSKNKIRVWILKDY-GRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEIL 319 (376)
Q Consensus 250 ~~~L~~~-~g~L~~~~~~~--------~~~~~~~~IW~l~~~-~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il 319 (376)
..++.+. .|.+++..... +.+...-++|.|+.. |+.++-.|.++-. ++..+. -+..+.++++.++.-+
T Consensus 234 Gcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp-~g~kPs-pRsgfsv~va~n~kal 311 (521)
T KOG1230|consen 234 GCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP-SGVKPS-PRSGFSVAVAKNHKAL 311 (521)
T ss_pred cceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC-CCCCCC-CCCceeEEEecCCceE
Confidence 4566666 88887766541 345566789999743 2224567888777 565544 1234677888776533
Q ss_pred -EEe-ccc-------C--CCcEEEEEeCCCCcEEEEEECCcc
Q 046476 320 -LTE-YKS-------S--LVSRVFIYDLKTQERRAIKIPPVT 350 (376)
Q Consensus 320 -~~~-~~~-------~--~~~~v~~ydl~t~~~~~v~~~~~~ 350 (376)
|.- ..+ + =-+.+++||+..++|.+..+++..
T Consensus 312 ~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~ 353 (521)
T KOG1230|consen 312 FFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKK 353 (521)
T ss_pred EecceecccccchhhhhhhhhhhhheecccchhhHhhhccCC
Confidence 332 111 0 125799999999999988777664
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.70 E-value=0.00055 Score=62.13 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCCC----hHHHHHHHccCCcccccccccccccchhhhcCCchhHHHH
Q 046476 7 DTVP----HDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVS 50 (376)
Q Consensus 7 ~~LP----~dll~~IL~rLp~~sl~r~r~VcK~W~~li~~~~~~F~~~ 50 (376)
..|| ++|.+.||+-|...+|..|+.|||+|+++++++ ..-+.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg--~~WKk 121 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG--MLWKK 121 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc--hHHHH
Confidence 3589 999999999999999999999999999999998 65553
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.9e-05 Score=68.69 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=36.1
Q ss_pred CCCCChHHHHHHHccCCcccccccccccccchhhhcCC
Q 046476 6 RDTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGT 43 (376)
Q Consensus 6 ~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~~~ 43 (376)
+..|||||++.||+.||.|+|+++..|||+|+++-++.
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de 135 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE 135 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence 57899999999999999999999999999999998876
No 27
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.23 E-value=0.01 Score=56.19 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=80.7
Q ss_pred cEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeE
Q 046476 102 FEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPEC 181 (376)
Q Consensus 102 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (376)
..+.++||.|++|..+++++.... . ......++ + |+..+...... ......+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r------~-------~~~~~~~~---~--~iyv~GG~~~~----------~~~~~~~ 219 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGT------A-------GSAIVHKG---N--KLLLINGEIKP----------GLRTAEV 219 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcC------C-------CceEEEEC---C--EEEEEeeeeCC----------Cccchhe
Confidence 468899999999999987664220 0 11111112 2 33333322110 0112445
Q ss_pred EEEEc--CCCCeeecCCCCC-cce--e---cCCceEECceEEEEEeCCC-C-----------------CCCEEEEEEcCC
Q 046476 182 EIFTL--GTTSWRKIDAPPS-RIH--F---RRQGLCANGFIHWIITNPR-K-----------------TKPVLAVFDVKE 235 (376)
Q Consensus 182 ~vys~--~t~~Wr~~~~~~~-~~~--~---~~~~v~~~G~lywl~~~~~-~-----------------~~~~il~fDl~~ 235 (376)
++|+. +++.|..+...+. ... . ....+.++|.||.++.... + ....+-+||+++
T Consensus 220 ~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~ 299 (346)
T TIGR03547 220 KQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN 299 (346)
T ss_pred EEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC
Confidence 55655 6679999877642 111 1 2225678999999986210 0 012578999999
Q ss_pred ceeEEE-eCCCcccCcceeEecCCeEEEEEec
Q 046476 236 EKFDIV-KLPDEVRKHHDLIQAEEKLGVLDCD 266 (376)
Q Consensus 236 e~~~~i-~~P~~~~~~~~L~~~~g~L~~~~~~ 266 (376)
++|+.+ ++|... .....+.++|+|+++...
T Consensus 300 ~~W~~~~~lp~~~-~~~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 300 GKWSKVGKLPQGL-AYGVSVSWNNGVLLIGGE 330 (346)
T ss_pred CcccccCCCCCCc-eeeEEEEcCCEEEEEecc
Confidence 999887 455532 334466789999999876
No 28
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.22 E-value=0.02 Score=54.86 Aligned_cols=153 Identities=14% Similarity=0.068 Sum_probs=87.5
Q ss_pred cEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeE
Q 046476 102 FEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPEC 181 (376)
Q Consensus 102 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (376)
..+.++||.|++|..+++.+.... . .......+ -++..+....... ........
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~------~-------~~a~v~~~-----~~iYv~GG~~~~~--------~~~~~~~~ 242 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGT------A-------GSAVVIKG-----NKLWLINGEIKPG--------LRTDAVKQ 242 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCC------C-------cceEEEEC-----CEEEEEeeeECCC--------cCChhheE
Confidence 468999999999999987664220 0 11111111 1344443321100 00111222
Q ss_pred EEEEcCCCCeeecCCCCCcc--ee-----cCCceEECceEEEEEeCCC-C---------------CC--CEEEEEEcCCc
Q 046476 182 EIFTLGTTSWRKIDAPPSRI--HF-----RRQGLCANGFIHWIITNPR-K---------------TK--PVLAVFDVKEE 236 (376)
Q Consensus 182 ~vys~~t~~Wr~~~~~~~~~--~~-----~~~~v~~~G~lywl~~~~~-~---------------~~--~~il~fDl~~e 236 (376)
..|+.++++|+.+...+... +. ....+.++|.+|.++.... . .. ..+-+||+++.
T Consensus 243 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~ 322 (376)
T PRK14131 243 GKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG 322 (376)
T ss_pred EEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC
Confidence 33466889999987664211 10 1125678999999886210 0 00 13568999999
Q ss_pred eeEEEe-CCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEcc
Q 046476 237 KFDIVK-LPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKD 281 (376)
Q Consensus 237 ~~~~i~-~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~ 281 (376)
+|+.+. +|... .....+.++|+|+++..........-+|+.++.
T Consensus 323 ~W~~~~~lp~~r-~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~ 367 (376)
T PRK14131 323 KWQKVGELPQGL-AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSW 367 (376)
T ss_pred cccccCcCCCCc-cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEE
Confidence 998773 45443 334577889999999876322344557777764
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.19 E-value=0.0082 Score=52.97 Aligned_cols=136 Identities=11% Similarity=0.149 Sum_probs=88.8
Q ss_pred CCCeEEEEEcCCCCeeecCCC--CCcceecCCceEECceEEEEEeCCCC----------CCCEEEEEEcCCceeEEEe--
Q 046476 177 GTPECEIFTLGTTSWRKIDAP--PSRIHFRRQGLCANGFIHWIITNPRK----------TKPVLAVFDVKEEKFDIVK-- 242 (376)
Q Consensus 177 ~~~~~~vys~~t~~Wr~~~~~--~~~~~~~~~~v~~~G~lywl~~~~~~----------~~~~il~fDl~~e~~~~i~-- 242 (376)
.+..+++++..|-.||.+... ||.......++..+|.+|-++...+. +...|++||+.++.|..-+
T Consensus 155 FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~ 234 (392)
T KOG4693|consen 155 FSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN 234 (392)
T ss_pred hhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC
Confidence 367889999999999997543 33333367788889999999873221 1567999999999998652
Q ss_pred --CCCcccCcceeEecCCeEEEEEecCC-CCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEE
Q 046476 243 --LPDEVRKHHDLIQAEEKLGVLDCDDF-RSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEIL 319 (376)
Q Consensus 243 --~P~~~~~~~~L~~~~g~L~~~~~~~~-~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il 319 (376)
.|.. .......+++|+++++..... -+..--++|..+.- ..-|.++.. =+.-++ ...+..++..+++++
T Consensus 235 ~~~P~G-RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~----t~~W~~I~~-~Gk~P~--aRRRqC~~v~g~kv~ 306 (392)
T KOG4693|consen 235 TMKPGG-RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPK----TSMWSVISV-RGKYPS--ARRRQCSVVSGGKVY 306 (392)
T ss_pred CcCCCc-ccccceEEEcceEEEecccchhhhhhhcceeecccc----cchheeeec-cCCCCC--cccceeEEEECCEEE
Confidence 1221 345677899999999987621 12344578888753 567888655 233333 112445444455554
Q ss_pred E
Q 046476 320 L 320 (376)
Q Consensus 320 ~ 320 (376)
+
T Consensus 307 L 307 (392)
T KOG4693|consen 307 L 307 (392)
T ss_pred E
Confidence 4
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.88 E-value=0.043 Score=48.56 Aligned_cols=169 Identities=12% Similarity=0.068 Sum_probs=100.7
Q ss_pred CCCCCeEEEEEcCCCCeeecCCCC--CcceecCCceEECceEEEEEeCCC---CCCCEEEEEEcCCceeEEEe---CCCc
Q 046476 175 NHGTPECEIFTLGTTSWRKIDAPP--SRIHFRRQGLCANGFIHWIITNPR---KTKPVLAVFDVKEEKFDIVK---LPDE 246 (376)
Q Consensus 175 ~~~~~~~~vys~~t~~Wr~~~~~~--~~~~~~~~~v~~~G~lywl~~~~~---~~~~~il~fDl~~e~~~~i~---~P~~ 246 (376)
........-|+.+|+.|++..... |......++++.+..+|-++.=.. ....-+-++|+.+.+|+.+. .|+.
T Consensus 101 egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Ppr 180 (392)
T KOG4693|consen 101 EGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPR 180 (392)
T ss_pred ccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCch
Confidence 344678888999999999865432 222225666777888887764100 11345889999999999985 3554
Q ss_pred ccCcceeEecCCeEEEEEecCCC------C--CCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcE
Q 046476 247 VRKHHDLIQAEEKLGVLDCDDFR------S--KNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEI 318 (376)
Q Consensus 247 ~~~~~~L~~~~g~L~~~~~~~~~------~--~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~i 318 (376)
-.....-..++|..+++....+. . .-.-+|=.|+- ..+.|.+... -+..+..-+ .--.+.-||++
T Consensus 181 wRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~----~T~aW~r~p~-~~~~P~GRR--SHS~fvYng~~ 253 (392)
T KOG4693|consen 181 WRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL----ATGAWTRTPE-NTMKPGGRR--SHSTFVYNGKM 253 (392)
T ss_pred hhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec----cccccccCCC-CCcCCCccc--ccceEEEcceE
Confidence 33444556678888888766321 0 11223334443 2467887644 233332111 11122235665
Q ss_pred EEEe-ccc---CCCcEEEEEeCCCCcEEEEEECCcc
Q 046476 319 LLTE-YKS---SLVSRVFIYDLKTQERRAIKIPPVT 350 (376)
Q Consensus 319 l~~~-~~~---~~~~~v~~ydl~t~~~~~v~~~~~~ 350 (376)
++-- +.. ..-+.++.||++|+.|..|...|..
T Consensus 254 Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 254 YMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred EEecccchhhhhhhcceeecccccchheeeeccCCC
Confidence 5432 110 1346799999999999999888773
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.79 E-value=0.093 Score=52.02 Aligned_cols=165 Identities=14% Similarity=0.062 Sum_probs=103.8
Q ss_pred CCeEEEEEcCCCCeeecCCCC--CcceecCCceEECceEEEEEeCCCC--CCCEEEEEEcCCceeEEEeCCCcc---cCc
Q 046476 178 TPECEIFTLGTTSWRKIDAPP--SRIHFRRQGLCANGFIHWIITNPRK--TKPVLAVFDVKEEKFDIVKLPDEV---RKH 250 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~--~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fDl~~e~~~~i~~P~~~---~~~ 250 (376)
..+++.|+..|+.|+...... |.....+..+..+-.+|..+..... ..+-+.+||+++.+|..+...... ...
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g 217 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG 217 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC
Confidence 578999999999999865432 2112256666777788887763211 256799999999999998653322 456
Q ss_pred ceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccC---C
Q 046476 251 HDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSS---L 327 (376)
Q Consensus 251 ~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~---~ 327 (376)
..++..+++++++.........-=++|.|+=. ...|.++.. .+..+- -+......+.++.-+++...... .
T Consensus 218 H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~----~~~W~~~~~-~g~~p~-~R~~h~~~~~~~~~~l~gG~~~~~~~~ 291 (482)
T KOG0379|consen 218 HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLS----TWEWKLLPT-GGDLPS-PRSGHSLTVSGDHLLLFGGGTDPKQEP 291 (482)
T ss_pred ceEEEECCeEEEEeccccCCceecceEeeecc----cceeeeccc-cCCCCC-CcceeeeEEECCEEEEEcCCccccccc
Confidence 77888899998887663233455689999854 456775443 222221 11223333333333333322111 3
Q ss_pred CcEEEEEeCCCCcEEEEEECC
Q 046476 328 VSRVFIYDLKTQERRAIKIPP 348 (376)
Q Consensus 328 ~~~v~~ydl~t~~~~~v~~~~ 348 (376)
-..++.+|.+++.|..+...+
T Consensus 292 l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 292 LGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ccccccccccccceeeeeccc
Confidence 467899999999998887655
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.63 E-value=0.06 Score=53.38 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCeeecCCCC--CcceecCCceEECceEEEEEeCCCC--CCCEEEEEEcCCceeEEEeC---CCcccCcce
Q 046476 180 ECEIFTLGTTSWRKIDAPP--SRIHFRRQGLCANGFIHWIITNPRK--TKPVLAVFDVKEEKFDIVKL---PDEVRKHHD 252 (376)
Q Consensus 180 ~~~vys~~t~~Wr~~~~~~--~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fDl~~e~~~~i~~---P~~~~~~~~ 252 (376)
.+.+++..+..|....... |........+.++..+|.++..... .-.-+-+||+.+.+|..+.. |+.......
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 5888888888887755443 2112266677888999999874321 13479999999999998853 222256677
Q ss_pred eEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeE-EEccCCcEEEEeccc--CCCc
Q 046476 253 LIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPV-SNSNNGEILLTEYKS--SLVS 329 (376)
Q Consensus 253 L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v-~~~~~g~il~~~~~~--~~~~ 329 (376)
++..+.+|+++..........-++|+++-. ...|.++.+ .+..+. ..+.+. .+.++.-+++.-... ..-.
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~----~~~W~~~~~-~g~~P~--pR~gH~~~~~~~~~~v~gG~~~~~~~l~ 241 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLE----TSTWSELDT-QGEAPS--PRYGHAMVVVGNKLLVFGGGDDGDVYLN 241 (482)
T ss_pred EEEECCEEEEECCccCcccceeeeeeeccc----cccceeccc-CCCCCC--CCCCceEEEECCeEEEEeccccCCceec
Confidence 788888998888764333367899999853 566999988 555443 222333 444333333333110 1235
Q ss_pred EEEEEeCCCCcEEEEEECC
Q 046476 330 RVFIYDLKTQERRAIKIPP 348 (376)
Q Consensus 330 ~v~~ydl~t~~~~~v~~~~ 348 (376)
.++.+|+.+.+|+.+...+
T Consensus 242 D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 242 DVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred ceEeeecccceeeeccccC
Confidence 7999999999998665444
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.03 E-value=0.24 Score=46.65 Aligned_cols=152 Identities=13% Similarity=0.183 Sum_probs=94.8
Q ss_pred CeEEEEEcCCCCeeecCCCC-CcceecCCce-EECceEEEEEeCCCCC-------CCEEEEEEcCCceeEEEeCCCcc--
Q 046476 179 PECEIFTLGTTSWRKIDAPP-SRIHFRRQGL-CANGFIHWIITNPRKT-------KPVLAVFDVKEEKFDIVKLPDEV-- 247 (376)
Q Consensus 179 ~~~~vys~~t~~Wr~~~~~~-~~~~~~~~~v-~~~G~lywl~~~~~~~-------~~~il~fDl~~e~~~~i~~P~~~-- 247 (376)
....+|+..++.|+.+..+- |-.......| +-.|.+|..+...... -.-+-.||+.+.+|..+.++...
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 46678888899999875442 1112233444 4457777666532211 12378899999999999887655
Q ss_pred cCcceeEecCCeEEEEEecCCCCCC---eEEEEEEccCCCCCCCceeEEEEEee--cccccccCcEeEEEccCCcEEEEe
Q 046476 248 RKHHDLIQAEEKLGVLDCDDFRSKN---KIRVWILKDYGRGGGEVWIRRDYVFR--FDTIMFRPPIPVSNSNNGEILLTE 322 (376)
Q Consensus 248 ~~~~~L~~~~g~L~~~~~~~~~~~~---~~~IW~l~~~~~g~~~~W~~~~~ii~--~~~~~~~~~~~v~~~~~g~il~~~ 322 (376)
.....++..+.+|.++....+.... --+||+.+= +...|++... =+ +.+. ....+.+.+.|.|++.-
T Consensus 178 RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL----dtykW~Klep-sga~PtpR---SGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 178 RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL----DTYKWSKLEP-SGAGPTPR---SGCQFSVTPQGGIVVYG 249 (521)
T ss_pred CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec----cceeeeeccC-CCCCCCCC---CcceEEecCCCcEEEEc
Confidence 5567899999999998876433222 246787763 3578999765 23 2222 33566667666665542
Q ss_pred -cc-------c---CCCcEEEEEeCCC
Q 046476 323 -YK-------S---SLVSRVFIYDLKT 338 (376)
Q Consensus 323 -~~-------~---~~~~~v~~ydl~t 338 (376)
+. + ..-..++..++++
T Consensus 250 GYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 250 GYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred chhHhhhhhhhhcCceeeeeeeecCCc
Confidence 21 0 0124688888887
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.00 E-value=0.0025 Score=57.50 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHccCC-----cccccccccccccchhhhcCCchhHHHHHhc
Q 046476 7 DTVPHDVAMDVLKILP-----EKARMRFKCVSKTWYSSIKGTILPLIVSFTN 53 (376)
Q Consensus 7 ~~LP~dll~~IL~rLp-----~~sl~r~r~VcK~W~~li~~~~~~F~~~~~~ 53 (376)
..||||||++||.++= ..+|.++.+|||.|+-...+| .|-.+...
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~--~lwR~aC~ 157 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP--ELWRLACL 157 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh--HHHHHHHH
Confidence 5799999999998754 599999999999999999999 88766544
No 35
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.21 E-value=4 Score=36.66 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=86.0
Q ss_pred cCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeE-EEeCCCcc-----------cCcceeEecCCeEEEEEecCCCCC
Q 046476 204 RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFD-IVKLPDEV-----------RKHHDLIQAEEKLGVLDCDDFRSK 271 (376)
Q Consensus 204 ~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~-~i~~P~~~-----------~~~~~L~~~~g~L~~~~~~~~~~~ 271 (376)
....|..||.+|+...+ ...|+.||+.+++.. ...+|... .....|++-+..|.++.... ...
T Consensus 71 GtG~vVYngslYY~~~~----s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~-~~~ 145 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYN----SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE-DNN 145 (250)
T ss_pred cCCeEEECCcEEEEecC----CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC-CCC
Confidence 56667889999999872 678999999999998 77888754 23467777788888887763 223
Q ss_pred CeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEeccc-CCCcEEEEEeCCCCcEEEEEECCcc
Q 046476 272 NKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKS-SLVSRVFIYDLKTQERRAIKIPPVT 350 (376)
Q Consensus 272 ~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~-~~~~~v~~ydl~t~~~~~v~~~~~~ 350 (376)
..+.|=.|+...=.....|.-.+ +.... .. ++--.|.++.+.... ....--++||+.+++-+.+.+.=..
T Consensus 146 g~ivvskld~~tL~v~~tw~T~~---~k~~~--~n----aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~ 216 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNTSY---PKRSA--GN----AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPN 216 (250)
T ss_pred CcEEEEeeCcccCceEEEEEecc---Cchhh--cc----eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeecc
Confidence 35888888753100234454321 11111 11 111135555554221 1244568899998888877664222
Q ss_pred ccceeeeeccc
Q 046476 351 EQDVVKFLDLK 361 (376)
Q Consensus 351 ~~~~~~~~~~~ 361 (376)
......-+.|+
T Consensus 217 ~~~~~~~l~YN 227 (250)
T PF02191_consen 217 PYGNISMLSYN 227 (250)
T ss_pred ccCceEeeeEC
Confidence 22333344444
No 36
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.96 E-value=7.7 Score=39.03 Aligned_cols=41 Identities=12% Similarity=0.395 Sum_probs=37.2
Q ss_pred CCCChHHHHHHHccCCcccccccccccccchhhhcCCchhHHH
Q 046476 7 DTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIV 49 (376)
Q Consensus 7 ~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~~~~~~F~~ 49 (376)
..||.|+...||.-|+.+++++++.||+.|+.++.+. ....
T Consensus 109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~--~~~~ 149 (537)
T KOG0274|consen 109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDD--KVWW 149 (537)
T ss_pred hcccchhcccccccCCHHHhhhhhhhcchhhhhhhcc--chhh
Confidence 5799999999999999999999999999999999876 5444
No 37
>smart00284 OLF Olfactomedin-like domains.
Probab=92.87 E-value=6.8 Score=35.16 Aligned_cols=130 Identities=19% Similarity=0.190 Sum_probs=80.5
Q ss_pred cCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeEEE-eCCCcc-----------cCcceeEecCCeEEEEEecCCCCC
Q 046476 204 RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIV-KLPDEV-----------RKHHDLIQAEEKLGVLDCDDFRSK 271 (376)
Q Consensus 204 ~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i-~~P~~~-----------~~~~~L~~~~g~L~~~~~~~~~~~ 271 (376)
...-|+.||.+|+.... ...|+-||+.+++.... .+|... .....|++-+..|.++.... ...
T Consensus 76 GtG~VVYngslYY~~~~----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~-~~~ 150 (255)
T smart00284 76 GTGVVVYNGSLYFNKFN----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATE-QNA 150 (255)
T ss_pred cccEEEECceEEEEecC----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEecc-CCC
Confidence 66678899999997652 56799999999999644 467532 24577888888998887763 245
Q ss_pred CeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEec-ccCCCcEEEEEeCCCCcEEEEEEC
Q 046476 272 NKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEY-KSSLVSRVFIYDLKTQERRAIKIP 347 (376)
Q Consensus 272 ~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~-~~~~~~~v~~ydl~t~~~~~v~~~ 347 (376)
..|.|=.|+...=.....|...+ +.... ...+.+ .|.+..+.. ......-.++||..|++-+.+.+.
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~~---~k~sa--~naFmv----CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITTY---NKRSA--SNAFMI----CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcCC---Ccccc--cccEEE----eeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 67888888864100233454421 11111 111111 244554431 112345578999999887776653
No 38
>PF13964 Kelch_6: Kelch motif
Probab=91.86 E-value=0.32 Score=31.55 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=30.3
Q ss_pred CCceEECceEEEEEeCCC--CCCCEEEEEEcCCceeEEEe
Q 046476 205 RQGLCANGFIHWIITNPR--KTKPVLAVFDVKEEKFDIVK 242 (376)
Q Consensus 205 ~~~v~~~G~lywl~~~~~--~~~~~il~fDl~~e~~~~i~ 242 (376)
...|.++|.||.++.... .....+..||+++++|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 456889999999987322 12578999999999999884
No 39
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.54 E-value=9.1 Score=36.14 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=75.8
Q ss_pred cCcEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCC
Q 046476 100 VGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTP 179 (376)
Q Consensus 100 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~ 179 (376)
......|+++.|+....+|.+..... . ...+..| ++ +..+........ .......
T Consensus 84 ~~~~t~vyDt~t~av~~~P~l~~pk~------~------pisv~VG-----~~--LY~m~~~~~~~~------~~~~~~~ 138 (342)
T PF07893_consen 84 QSGRTLVYDTDTRAVATGPRLHSPKR------C------PISVSVG-----DK--LYAMDRSPFPEP------AGRPDFP 138 (342)
T ss_pred CCCCeEEEECCCCeEeccCCCCCCCc------c------eEEEEeC-----Ce--EEEeeccCcccc------ccCccce
Confidence 34568899999999999998654331 1 1222221 22 444443322110 0000001
Q ss_pred eEEEEE----------cCCCCeeecCCCCCcce--------ecCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeEEE
Q 046476 180 ECEIFT----------LGTTSWRKIDAPPSRIH--------FRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIV 241 (376)
Q Consensus 180 ~~~vys----------~~t~~Wr~~~~~~~~~~--------~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i 241 (376)
.+|+++ ..+++|+..+.+| ... ....+|. +|.--|+... +......+||+++.+|+..
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~PP-f~~~~~~~~~~i~sYavv-~g~~I~vS~~--~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPPPP-FVRDRRYSDYRITSYAVV-DGRTIFVSVN--GRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCCCC-ccccCCcccceEEEEEEe-cCCeEEEEec--CCceEEEEEEcCCcceeec
Confidence 555552 2336788887754 221 1234566 8988888662 1012699999999999986
Q ss_pred ---eCCCcc------cCcceeEec--C--CeEEEEEec
Q 046476 242 ---KLPDEV------RKHHDLIQA--E--EKLGVLDCD 266 (376)
Q Consensus 242 ---~~P~~~------~~~~~L~~~--~--g~L~~~~~~ 266 (376)
.||... +....++.. + +.||.+...
T Consensus 215 GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~ 252 (342)
T PF07893_consen 215 GDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVS 252 (342)
T ss_pred cceecCcCCccEECCCcCeEEEeccCCCCcEEEEEecc
Confidence 678754 223333333 3 367666654
No 40
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.52 E-value=8.9 Score=33.48 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=81.8
Q ss_pred CeEEEEEcCCC--CeeecCCCCCcceecCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeEE-EeCCCcccCcceeEe
Q 046476 179 PECEIFTLGTT--SWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDI-VKLPDEVRKHHDLIQ 255 (376)
Q Consensus 179 ~~~~vys~~t~--~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~-i~~P~~~~~~~~L~~ 255 (376)
-.+..++..++ .|+.-... .........+..+|.+|.... .+.|.++|..+++-.. ..+|... ......
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~-----~~~l~~~d~~tG~~~W~~~~~~~~--~~~~~~ 74 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASG-----DGNLYALDAKTGKVLWRFDLPGPI--SGAPVV 74 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEET-----TSEEEEEETTTSEEEEEEECSSCG--GSGEEE
T ss_pred CEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcC-----CCEEEEEECCCCCEEEEeeccccc--cceeee
Confidence 35677787775 48874322 111112224557888888865 8899999987765432 3444433 222467
Q ss_pred cCCeEEEEEecCCCCCCeEEEEEEc-cCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEE
Q 046476 256 AEEKLGVLDCDDFRSKNKIRVWILK-DYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIY 334 (376)
Q Consensus 256 ~~g~L~~~~~~~~~~~~~~~IW~l~-~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~y 334 (376)
.++.+++...+ . .|+.++ .. .+..|......-+.... .......+. ++.+++.. ....++.+
T Consensus 75 ~~~~v~v~~~~-----~--~l~~~d~~t---G~~~W~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~----~~g~l~~~ 137 (238)
T PF13360_consen 75 DGGRVYVGTSD-----G--SLYALDAKT---GKVLWSIYLTSSPPAGV--RSSSSPAVD-GDRLYVGT----SSGKLVAL 137 (238)
T ss_dssp ETTEEEEEETT-----S--EEEEEETTT---SCEEEEEEE-SSCTCST--B--SEEEEE-TTEEEEEE----TCSEEEEE
T ss_pred cccccccccce-----e--eeEecccCC---cceeeeecccccccccc--ccccCceEe-cCEEEEEe----ccCcEEEE
Confidence 78888777633 2 677776 44 36789853330122221 111122222 45566665 58999999
Q ss_pred eCCCCcEEEE
Q 046476 335 DLKTQERRAI 344 (376)
Q Consensus 335 dl~t~~~~~v 344 (376)
|+++++..+-
T Consensus 138 d~~tG~~~w~ 147 (238)
T PF13360_consen 138 DPKTGKLLWK 147 (238)
T ss_dssp ETTTTEEEEE
T ss_pred ecCCCcEEEE
Confidence 9999877544
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.24 E-value=3.7 Score=37.05 Aligned_cols=141 Identities=16% Similarity=0.231 Sum_probs=85.3
Q ss_pred eecccccceEEEEEecCcEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCC
Q 046476 85 RVTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTT 164 (376)
Q Consensus 85 ~~~~s~nGLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~ 164 (376)
-+++.-+|-|-+..--.+.+...||.++.--.+|++.... .-.-.++.|+.. -+++.+.
T Consensus 193 Gi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~--------------~gsRriwsdpig----~~wittw--- 251 (353)
T COG4257 193 GICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALK--------------AGSRRIWSDPIG----RAWITTW--- 251 (353)
T ss_pred ceEECCCCcEEEEeccccceEEcccccCCcceecCCCccc--------------ccccccccCccC----cEEEecc---
Confidence 3555566666555434666788899999877888776533 112223334322 1233221
Q ss_pred CCCcccceecCCCCCeEEEEEcCCCCeeecCCCCCcceecCCceEEC--ceEEEEEeCCCCCCCEEEEEEcCCceeEEEe
Q 046476 165 NSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCAN--GFIHWIITNPRKTKPVLAVFDVKEEKFDIVK 242 (376)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~--G~lywl~~~~~~~~~~il~fDl~~e~~~~i~ 242 (376)
..-..+.|+..+.+|++-+-+. ......++++| |.+ |+.+ -+ .+.|.-||.++++|..++
T Consensus 252 ------------g~g~l~rfdPs~~sW~eypLPg--s~arpys~rVD~~grV-W~se--a~-agai~rfdpeta~ftv~p 313 (353)
T COG4257 252 ------------GTGSLHRFDPSVTSWIEYPLPG--SKARPYSMRVDRHGRV-WLSE--AD-AGAIGRFDPETARFTVLP 313 (353)
T ss_pred ------------CCceeeEeCcccccceeeeCCC--CCCCcceeeeccCCcE-Eeec--cc-cCceeecCcccceEEEec
Confidence 1567888999999999876542 11244556665 444 5543 12 789999999999999999
Q ss_pred CCCcccCcceeEecCCeEEEEE
Q 046476 243 LPDEVRKHHDLIQAEEKLGVLD 264 (376)
Q Consensus 243 ~P~~~~~~~~L~~~~g~L~~~~ 264 (376)
.|........|.--.|+|.+.+
T Consensus 314 ~pr~n~gn~ql~gr~ge~W~~e 335 (353)
T COG4257 314 IPRPNSGNIQLDGRPGELWFTE 335 (353)
T ss_pred CCCCCCCceeccCCCCceeecc
Confidence 9875433333433344554443
No 42
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=90.35 E-value=3.4 Score=32.90 Aligned_cols=70 Identities=21% Similarity=0.348 Sum_probs=50.8
Q ss_pred CEEEEEEcCCc--eeEEEeCCCcc-------------cCcceeEecCCeEEEEEecCC------CCCCeEEEEEEccCCC
Q 046476 226 PVLAVFDVKEE--KFDIVKLPDEV-------------RKHHDLIQAEEKLGVLDCDDF------RSKNKIRVWILKDYGR 284 (376)
Q Consensus 226 ~~il~fDl~~e--~~~~i~~P~~~-------------~~~~~L~~~~g~L~~~~~~~~------~~~~~~~IW~l~~~~~ 284 (376)
..|+..|+-.+ .++-|++|... .....++..+|+|.+++.... ....++.+|.|... .
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~-~ 84 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDP-E 84 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccC-C
Confidence 35778888765 77888888765 124566778999999888742 24567999999874 1
Q ss_pred CCCCceeEEEEE
Q 046476 285 GGGEVWIRRDYV 296 (376)
Q Consensus 285 g~~~~W~~~~~i 296 (376)
++...|.+-+.+
T Consensus 85 ~~~~~W~~d~~v 96 (131)
T PF07762_consen 85 GSSWEWKKDCEV 96 (131)
T ss_pred CCCCCEEEeEEE
Confidence 146789999984
No 43
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.31 E-value=12 Score=32.73 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=70.0
Q ss_pred eEEEEEcCCC--Ceee-cCCCCCccee-cCCceEECceEEEEEeCCCCCCCEEEEEEcCCcee--EE-EeCCCcc-----
Q 046476 180 ECEIFTLGTT--SWRK-IDAPPSRIHF-RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKF--DI-VKLPDEV----- 247 (376)
Q Consensus 180 ~~~vys~~t~--~Wr~-~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~--~~-i~~P~~~----- 247 (376)
.+..++..++ .|+. ....++.... .......++.+|.... .+.|.++|+++.+- .. +..|...
T Consensus 87 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 87 SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-----SGKLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-----CSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-----cCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 5666676665 5883 4332211112 3334444677777765 78999999887654 32 2223211
Q ss_pred --cCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEeccc
Q 046476 248 --RKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKS 325 (376)
Q Consensus 248 --~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~ 325 (376)
.....+...+|.+++.... ...+.+ -+.. .+..|.+. +. .. .......++.+++..
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~----g~~~~~-d~~t----g~~~w~~~---~~--~~-----~~~~~~~~~~l~~~~--- 219 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGD----GRVVAV-DLAT----GEKLWSKP---IS--GI-----YSLPSVDGGTLYVTS--- 219 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCT----SSEEEE-ETTT----TEEEEEEC---SS---E-----CECEECCCTEEEEEE---
T ss_pred ecccccceEEECCEEEEEcCC----CeEEEE-ECCC----CCEEEEec---CC--Cc-----cCCceeeCCEEEEEe---
Confidence 1123444456766665543 222333 2221 12336332 11 11 111122345555555
Q ss_pred CCCcEEEEEeCCCCcEEEE
Q 046476 326 SLVSRVFIYDLKTQERRAI 344 (376)
Q Consensus 326 ~~~~~v~~ydl~t~~~~~v 344 (376)
.++.++++|++|++..+.
T Consensus 220 -~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 -SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -TTTEEEEEETTTTEEEEE
T ss_pred -CCCEEEEEECCCCCEEeE
Confidence 689999999999988764
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=90.16 E-value=0.76 Score=29.63 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=31.1
Q ss_pred cCCceEECceEEEEEeC----CCCCCCEEEEEEcCCceeEEEeCC
Q 046476 204 RRQGLCANGFIHWIITN----PRKTKPVLAVFDVKEEKFDIVKLP 244 (376)
Q Consensus 204 ~~~~v~~~G~lywl~~~----~~~~~~~il~fDl~~e~~~~i~~P 244 (376)
....+.++|++|..+.. .......+..||+++.+|+.++.+
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 34578889999999874 111256799999999999988653
No 45
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.17 E-value=15 Score=32.47 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=108.5
Q ss_pred cccceEEEEEecCcEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCc
Q 046476 89 LINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSS 168 (376)
Q Consensus 89 s~nGLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 168 (376)
..+|-|.+.+.....++.++|.+++...++.+. ..|+.++...+.. +++.
T Consensus 9 ~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-------------------~~G~~~~~~~g~l-~v~~---------- 58 (246)
T PF08450_consen 9 PRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-------------------PNGMAFDRPDGRL-YVAD---------- 58 (246)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-------------------EEEEEEECTTSEE-EEEE----------
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-------------------CceEEEEccCCEE-EEEE----------
Confidence 346777777656788999999999886543322 2344444222222 2221
Q ss_pred ccceecCCCCCeEEEEEcCCCCeeecCCCCC---ccee-cCCceEECceEEEEEeCCCC--CC--CEEEEEEcCCceeEE
Q 046476 169 YAWMIDNHGTPECEIFTLGTTSWRKIDAPPS---RIHF-RRQGLCANGFIHWIITNPRK--TK--PVLAVFDVKEEKFDI 240 (376)
Q Consensus 169 ~~~~~~~~~~~~~~vys~~t~~Wr~~~~~~~---~~~~-~~~~v~~~G~lywl~~~~~~--~~--~~il~fDl~~e~~~~ 240 (376)
.....+++..++.++.+...+. .... ..-.+--+|.+|+-...... .. +.+..+|.+ .+...
T Consensus 59 ---------~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 59 ---------SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp ---------TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred ---------cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence 2344666888888876644321 1111 22233347897776552211 11 679999999 55544
Q ss_pred E----eCCCcccCcceeEecCCe-EEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEe--EEEc
Q 046476 241 V----KLPDEVRKHHDLIQAEEK-LGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIP--VSNS 313 (376)
Q Consensus 241 i----~~P~~~~~~~~L~~~~g~-L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~--v~~~ 313 (376)
+ ..|.. ....-+|+ |+++... ... ||.++-.. ....+.....++..... ...| +++.
T Consensus 129 ~~~~~~~pNG-----i~~s~dg~~lyv~ds~----~~~--i~~~~~~~--~~~~~~~~~~~~~~~~~---~g~pDG~~vD 192 (246)
T PF08450_consen 129 VADGLGFPNG-----IAFSPDGKTLYVADSF----NGR--IWRFDLDA--DGGELSNRRVFIDFPGG---PGYPDGLAVD 192 (246)
T ss_dssp EEEEESSEEE-----EEEETTSSEEEEEETT----TTE--EEEEEEET--TTCCEEEEEEEEE-SSS---SCEEEEEEEB
T ss_pred EecCcccccc-----eEECCcchheeecccc----cce--eEEEeccc--cccceeeeeeEEEcCCC---CcCCCcceEc
Confidence 3 22332 12333554 6665543 333 66665321 12345554442122111 1134 5777
Q ss_pred cCCcEEEEecccCCCcEEEEEeCCCCcEEEEEEC
Q 046476 314 NNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIP 347 (376)
Q Consensus 314 ~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~~~ 347 (376)
.+|.|++... ....|+.||++.+..+.+.+.
T Consensus 193 ~~G~l~va~~---~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 193 SDGNLWVADW---GGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp TTS-EEEEEE---TTTEEEEEETTSCEEEEEE-S
T ss_pred CCCCEEEEEc---CCCEEEEECCCccEEEEEcCC
Confidence 7899988763 688999999998888888776
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.43 E-value=17 Score=32.09 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=66.4
Q ss_pred ccccceEEEEEecCcEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046476 88 QLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSS 167 (376)
Q Consensus 88 ~s~nGLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 167 (376)
--.+|--|+.+..+..+-+|||..+..++-=... +.. ...+...+|.. | +..
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh--------G~E------VlD~~~s~Dns----k---f~s------- 76 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH--------GHE------VLDAALSSDNS----K---FAS------- 76 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecCC--------Cce------eeecccccccc----c---ccc-------
Confidence 3456777777667888999999988765432211 111 13333333432 1 000
Q ss_pred cccceecCCCCCeEEEEEcCCC----CeeecCCCCCccee-cCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeEEEe
Q 046476 168 SYAWMIDNHGTPECEIFTLGTT----SWRKIDAPPSRIHF-RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVK 242 (376)
Q Consensus 168 ~~~~~~~~~~~~~~~vys~~t~----~Wr~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~ 242 (376)
......+.+++..|+ +||-....-....+ ...+|.+.|. .+..|-+||-.+..+..|+
T Consensus 77 -------~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs----------fD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 77 -------CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS----------FDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred -------CCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc----------ccceeEEEEcccCCCCccc
Confidence 122567888998886 46654433222222 3344444443 2678999999999999888
Q ss_pred CCCcc
Q 046476 243 LPDEV 247 (376)
Q Consensus 243 ~P~~~ 247 (376)
.=.+.
T Consensus 140 ildea 144 (307)
T KOG0316|consen 140 ILDEA 144 (307)
T ss_pred hhhhh
Confidence 64443
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.39 E-value=13 Score=35.34 Aligned_cols=136 Identities=13% Similarity=0.241 Sum_probs=73.5
Q ss_pred CeEEEEEcCC---CCeeecCCCCCcceecCCceEECce-EEEEEeCCCCCCCEEEEEEcCCceeE-EEeCCCcccCccee
Q 046476 179 PECEIFTLGT---TSWRKIDAPPSRIHFRRQGLCANGF-IHWIITNPRKTKPVLAVFDVKEEKFD-IVKLPDEVRKHHDL 253 (376)
Q Consensus 179 ~~~~vys~~t---~~Wr~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fDl~~e~~~-~i~~P~~~~~~~~L 253 (376)
..+...+.+. +.|+-+..+ ..+ .-++.-||+ ++-.+. +..|..|+.++..-+ .|..-. ....+
T Consensus 334 r~i~~wdlDgn~~~~W~gvr~~--~v~--dlait~Dgk~vl~v~~-----d~~i~l~~~e~~~dr~lise~~---~its~ 401 (519)
T KOG0293|consen 334 RTIIMWDLDGNILGNWEGVRDP--KVH--DLAITYDGKYVLLVTV-----DKKIRLYNREARVDRGLISEEQ---PITSF 401 (519)
T ss_pred CcEEEecCCcchhhcccccccc--eeE--EEEEcCCCcEEEEEec-----ccceeeechhhhhhhccccccC---ceeEE
Confidence 4445555555 468776543 111 223334553 222233 556777777765544 332211 12334
Q ss_pred Eec-CCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeE-EEcc-CCcEEEEecccCCCcE
Q 046476 254 IQA-EEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPV-SNSN-NGEILLTEYKSSLVSR 330 (376)
Q Consensus 254 ~~~-~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v-~~~~-~g~il~~~~~~~~~~~ 330 (376)
... +|+++++... ..++.+|-++| |..+...++...- ++..- |+.+ |..++... +.+.+
T Consensus 402 ~iS~d~k~~LvnL~----~qei~LWDl~e--------~~lv~kY~Ghkq~---~fiIrSCFgg~~~~fiaSG---SED~k 463 (519)
T KOG0293|consen 402 SISKDGKLALVNLQ----DQEIHLWDLEE--------NKLVRKYFGHKQG---HFIIRSCFGGGNDKFIASG---SEDSK 463 (519)
T ss_pred EEcCCCcEEEEEcc----cCeeEEeecch--------hhHHHHhhccccc---ceEEEeccCCCCcceEEec---CCCce
Confidence 444 8899999987 89999998774 3333331232221 11211 4433 33455544 37888
Q ss_pred EEEEeCCCCcEEEE
Q 046476 331 VFIYDLKTQERRAI 344 (376)
Q Consensus 331 v~~ydl~t~~~~~v 344 (376)
|++|+.++++.-.+
T Consensus 464 vyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 464 VYIWHRISGKLLAV 477 (519)
T ss_pred EEEEEccCCceeEe
Confidence 99999988877554
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=88.11 E-value=15 Score=32.21 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=67.2
Q ss_pred EECceEEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcc---cCc--ceeEe--cCC--eEEEEEec-CCCCCCeEEEEE
Q 046476 209 CANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEV---RKH--HDLIQ--AEE--KLGVLDCD-DFRSKNKIRVWI 278 (376)
Q Consensus 209 ~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~---~~~--~~L~~--~~g--~L~~~~~~-~~~~~~~~~IW~ 278 (376)
.+||.+ .+.. ...++.+|+.|+++..+|.|+.. ... ..++- ..+ ++..+... .......++|..
T Consensus 3 sCnGLl-c~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 3 PCDGLI-CFSY-----GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred ccceEE-EEec-----CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 468888 4544 36799999999999999866532 111 11211 111 22222111 001234566666
Q ss_pred EccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccC-CC-cEEEEEeCCCCcEEE-EEEC
Q 046476 279 LKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSS-LV-SRVFIYDLKTQERRA-IKIP 347 (376)
Q Consensus 279 l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~-~~-~~v~~ydl~t~~~~~-v~~~ 347 (376)
+.. .+|..... .++... .. .. ++.-+|.+.+...... .. ..++.||++++++++ +...
T Consensus 77 ~~~------~~Wr~~~~-~~~~~~-~~--~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 77 LGS------NSWRTIEC-SPPHHP-LK--SR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred eCC------CCcccccc-CCCCcc-cc--CC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 653 37888654 232111 11 22 4445788887763211 11 279999999999995 6543
No 49
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.59 E-value=4.3 Score=39.67 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=48.9
Q ss_pred EEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeEE
Q 046476 103 EILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECE 182 (376)
Q Consensus 103 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (376)
++.|+|-+|+||. +|......+ -+ ...+||.+|. =+++.+...-. -..+.-+
T Consensus 58 ELHvYNTatnqWf-~PavrGDiP------pg-----cAA~GfvcdG----trilvFGGMvE------------YGkYsNd 109 (830)
T KOG4152|consen 58 ELHVYNTATNQWF-APAVRGDIP------PG-----CAAFGFVCDG----TRILVFGGMVE------------YGKYSND 109 (830)
T ss_pred hhhhhccccceee-cchhcCCCC------Cc-----hhhcceEecC----ceEEEEccEee------------eccccch
Confidence 6899999999997 554333221 11 2455665553 24444432211 1144556
Q ss_pred EEEcCC--CCeeecCCCCCc-----cee-cCCceEECceEEEEEe
Q 046476 183 IFTLGT--TSWRKIDAPPSR-----IHF-RRQGLCANGFIHWIIT 219 (376)
Q Consensus 183 vys~~t--~~Wr~~~~~~~~-----~~~-~~~~v~~~G~lywl~~ 219 (376)
.|.+.. +.|+.+...+|. +.. .++-+....+.|.++.
T Consensus 110 LYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGG 154 (830)
T KOG4152|consen 110 LYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGG 154 (830)
T ss_pred HHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecc
Confidence 677766 567776543321 111 4555666778888774
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.51 E-value=0.25 Score=46.90 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=36.6
Q ss_pred CCCCCCChHHHHHHHccCCcccccccccccccchhhhcCC
Q 046476 4 KRRDTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGT 43 (376)
Q Consensus 4 ~~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~~~ 43 (376)
...-.||.|++..||+-|..++++|++.+|+.|+.+..|.
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 3445799999999999999999999999999999998876
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.36 E-value=16 Score=32.70 Aligned_cols=147 Identities=13% Similarity=0.167 Sum_probs=81.8
Q ss_pred CeEEEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCCCCCEEEEEEcCC----ceeEEEeCCCcc---cCcc
Q 046476 179 PECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKE----EKFDIVKLPDEV---RKHH 251 (376)
Q Consensus 179 ~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~----e~~~~i~~P~~~---~~~~ 251 (376)
....+|++.|+++|....... ..+....+.-||.+.-.+....+ ...+-.|+..+ ..|.. .|... +.+.
T Consensus 46 a~s~~yD~~tn~~rpl~v~td-~FCSgg~~L~dG~ll~tGG~~~G-~~~ir~~~p~~~~~~~~w~e--~~~~m~~~RWYp 121 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTD-TFCSGGAFLPDGRLLQTGGDNDG-NKAIRIFTPCTSDGTCDWTE--SPNDMQSGRWYP 121 (243)
T ss_pred EEEEEEecCCCcEEeccCCCC-CcccCcCCCCCCCEEEeCCCCcc-ccceEEEecCCCCCCCCceE--CcccccCCCccc
Confidence 345678888888887765432 22234455567877755543223 45677888765 34543 33222 4555
Q ss_pred eeEec-CCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeE-EEccCCcEEEEecccCCCc
Q 046476 252 DLIQA-EEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPV-SNSNNGEILLTEYKSSLVS 329 (376)
Q Consensus 252 ~L~~~-~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v-~~~~~g~il~~~~~~~~~~ 329 (376)
....+ +|++.++.... ....+.|=-+..+ .....|..... .. ... -....|. .+..+|+|++.. ..
T Consensus 122 T~~~L~DG~vlIvGG~~---~~t~E~~P~~~~~-~~~~~~~~l~~-~~-~~~-~~nlYP~~~llPdG~lFi~a-----n~ 189 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSN---NPTYEFWPPKGPG-PGPVTLPFLSQ-TS-DTL-PNNLYPFVHLLPDGNLFIFA-----NR 189 (243)
T ss_pred cceECCCCCEEEEeCcC---CCcccccCCccCC-CCceeeecchh-hh-ccC-ccccCceEEEcCCCCEEEEE-----cC
Confidence 55555 89988888762 4455555321111 01112211111 11 111 1134666 667899999876 45
Q ss_pred EEEEEeCCCCcE
Q 046476 330 RVFIYDLKTQER 341 (376)
Q Consensus 330 ~v~~ydl~t~~~ 341 (376)
.-.+||.+++++
T Consensus 190 ~s~i~d~~~n~v 201 (243)
T PF07250_consen 190 GSIIYDYKTNTV 201 (243)
T ss_pred CcEEEeCCCCeE
Confidence 677889999976
No 52
>PF13964 Kelch_6: Kelch motif
Probab=87.20 E-value=0.94 Score=29.24 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=19.1
Q ss_pred CcEEEEEecCCcceecCCCCCc
Q 046476 101 GFEILMRNVVTQEIIDLPKSTF 122 (376)
Q Consensus 101 ~~~~~V~NP~T~~~~~LP~~~~ 122 (376)
.+.+.++||.|++|.++|+++.
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCC
Confidence 3578999999999999998764
No 53
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=86.81 E-value=1.7 Score=27.48 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=30.0
Q ss_pred CCceEECceEEEEEeCCC--CCCCEEEEEEcCCceeEEEe
Q 046476 205 RQGLCANGFIHWIITNPR--KTKPVLAVFDVKEEKFDIVK 242 (376)
Q Consensus 205 ~~~v~~~G~lywl~~~~~--~~~~~il~fDl~~e~~~~i~ 242 (376)
...+.++|.+|-++.... .....+..||+.+.+|+.++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 456888999999997322 12568999999999999874
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=86.64 E-value=15 Score=35.23 Aligned_cols=112 Identities=12% Similarity=0.107 Sum_probs=66.5
Q ss_pred CCceEECceEEEEEeCCCCCCCEEEEEEcCCc--eeEEEeCCCcc---------cCcceeEecCCeEEEEEecCCCCCCe
Q 046476 205 RQGLCANGFIHWIITNPRKTKPVLAVFDVKEE--KFDIVKLPDEV---------RKHHDLIQAEEKLGVLDCDDFRSKNK 273 (376)
Q Consensus 205 ~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e--~~~~i~~P~~~---------~~~~~L~~~~g~L~~~~~~~~~~~~~ 273 (376)
..++..+|.+|.... .+.+.+||.++. .|+. +++... .....++..+|+|++.... .
T Consensus 63 ~sPvv~~~~vy~~~~-----~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~-----g- 130 (394)
T PRK11138 63 LHPAVAYNKVYAADR-----AGLVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK-----G- 130 (394)
T ss_pred eccEEECCEEEEECC-----CCeEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCC-----C-
Confidence 467889999999877 678999998754 4542 222211 0112345567787765432 2
Q ss_pred EEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEE
Q 046476 274 IRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAI 344 (376)
Q Consensus 274 ~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v 344 (376)
.+..++... .+..|.... +.... . .|+. .++.+++.. .++.++.+|++|++..+-
T Consensus 131 -~l~ald~~t--G~~~W~~~~---~~~~~--s--sP~v--~~~~v~v~~----~~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 131 -QVYALNAED--GEVAWQTKV---AGEAL--S--RPVV--SDGLVLVHT----SNGMLQALNESDGAVKWT 185 (394)
T ss_pred -EEEEEECCC--CCCcccccC---CCcee--c--CCEE--ECCEEEEEC----CCCEEEEEEccCCCEeee
Confidence 355565321 367887652 22111 1 3432 246666655 677899999988876643
No 55
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=83.05 E-value=41 Score=31.46 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=76.0
Q ss_pred CceEEEEEeCCCCCCCEEEEEEcCCceeEEE---eCCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCC
Q 046476 211 NGFIHWIITNPRKTKPVLAVFDVKEEKFDIV---KLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGG 287 (376)
Q Consensus 211 ~G~lywl~~~~~~~~~~il~fDl~~e~~~~i---~~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~ 287 (376)
+|..-|... .+ .+.|..||++.++.... .+++..+.+....--+|+++.+.... ..++.+|..+.. .
T Consensus 155 ~~~~l~v~D--LG-~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL---~stV~v~~y~~~----~ 224 (346)
T COG2706 155 DGRYLVVPD--LG-TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL---NSTVDVLEYNPA----V 224 (346)
T ss_pred CCCEEEEee--cC-CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc---CCEEEEEEEcCC----C
Confidence 444444443 23 56677777776555432 33444345555556688886665542 789999998864 2
Q ss_pred CceeEEEEEeeccccccc---CcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEEEE
Q 046476 288 EVWIRRDYVFRFDTIMFR---PPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKI 346 (376)
Q Consensus 288 ~~W~~~~~ii~~~~~~~~---~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~~ 346 (376)
.+-..+.+ +...+-.+. -...+.+..+|+.|+.....++.-.+|..|..+++++-+..
T Consensus 225 g~~~~lQ~-i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 225 GKFEELQT-IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred ceEEEeee-eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 45555555 232221111 12456788899999887443444567888888888887765
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.26 E-value=48 Score=31.76 Aligned_cols=109 Identities=17% Similarity=0.275 Sum_probs=65.3
Q ss_pred cCCceEECceEEEEEeCCCCCCCEEEEEEcCCc--eeEEEeCCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEcc
Q 046476 204 RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEE--KFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKD 281 (376)
Q Consensus 204 ~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e--~~~~i~~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~ 281 (376)
...++..+|.+|.... .+.+.++|+.+. .|+. +.+. ...+...+|.|++...+ . .|..++-
T Consensus 249 ~~sP~v~~~~vy~~~~-----~g~l~ald~~tG~~~W~~-~~~~----~~~~~~~~~~vy~~~~~-----g--~l~ald~ 311 (394)
T PRK11138 249 DTTPVVVGGVVYALAY-----NGNLVALDLRSGQIVWKR-EYGS----VNDFAVDGGRIYLVDQN-----D--RVYALDT 311 (394)
T ss_pred CCCcEEECCEEEEEEc-----CCeEEEEECCCCCEEEee-cCCC----ccCcEEECCEEEEEcCC-----C--eEEEEEC
Confidence 3567888999998877 778999999875 4543 2211 11245567777776543 2 2444433
Q ss_pred CCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEE
Q 046476 282 YGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRA 343 (376)
Q Consensus 282 ~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~ 343 (376)
.. .+..|..... .... .. .|+. .+|.|++.. .++.++++|.++.+...
T Consensus 312 ~t--G~~~W~~~~~--~~~~--~~--sp~v--~~g~l~v~~----~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 312 RG--GVELWSQSDL--LHRL--LT--APVL--YNGYLVVGD----SEGYLHWINREDGRFVA 359 (394)
T ss_pred CC--CcEEEccccc--CCCc--cc--CCEE--ECCEEEEEe----CCCEEEEEECCCCCEEE
Confidence 21 2456754211 1111 11 3432 367777776 78899999999987654
No 57
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=82.12 E-value=37 Score=30.33 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=95.1
Q ss_pred EeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeEEEEEcCCCC-eeecCCCCCcceecCCceEEC-ceEEEEEeCCCC
Q 046476 146 FDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTS-WRKIDAPPSRIHFRRQGLCAN-GFIHWIITNPRK 223 (376)
Q Consensus 146 ~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~~vys~~t~~-Wr~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~~ 223 (376)
|+..++.-.+|.+.+. .+|++-....-.+.|++++.-. =|...... .-+.|+.+ .--..+.. +
T Consensus 79 ~e~h~kNVtaVgF~~d-------grWMyTgseDgt~kIWdlR~~~~qR~~~~~s-----pVn~vvlhpnQteLis~--d- 143 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCD-------GRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS-----PVNTVVLHPNQTELISG--D- 143 (311)
T ss_pred EeccCCceEEEEEeec-------CeEEEecCCCceEEEEeccCcccchhccCCC-----CcceEEecCCcceEEee--c-
Confidence 3444444445555433 3476666677778887776611 11111110 11222222 11112222 1
Q ss_pred CCCEEEEEEcCCceeEEEeCCCcccCcceeEec-CCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccc
Q 046476 224 TKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQA-EEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTI 302 (376)
Q Consensus 224 ~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~-~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~ 302 (376)
..+.|-++|+.+..+.....|+.......|.+. +|+.-.+... ....-+|.|-... ....-+-+.. ++.+..
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~--~~s~l~P~~k-~~ah~~ 216 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQ--TASELEPVHK-FQAHNG 216 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCC--ccccceEhhh-eecccc
Confidence 167899999999999998888876444556555 6765444433 6677799986431 2222222333 333221
Q ss_pred cccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEEEECCc
Q 046476 303 MFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPV 349 (376)
Q Consensus 303 ~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~~~~~ 349 (376)
+....-+.++++.+... +.+..+.+|+.++--.-+..++|.
T Consensus 217 ---~il~C~lSPd~k~lat~---ssdktv~iwn~~~~~kle~~l~gh 257 (311)
T KOG0315|consen 217 ---HILRCLLSPDVKYLATC---SSDKTVKIWNTDDFFKLELVLTGH 257 (311)
T ss_pred ---eEEEEEECCCCcEEEee---cCCceEEEEecCCceeeEEEeecC
Confidence 22333446678877766 367889999998882223334444
No 58
>smart00612 Kelch Kelch domain.
Probab=80.14 E-value=4.4 Score=25.04 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=17.9
Q ss_pred CCeEEEEEcCCCCeeecCCCC
Q 046476 178 TPECEIFTLGTTSWRKIDAPP 198 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~ 198 (376)
...+++|+.+++.|+..+..+
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeeEEEECCCCCeEccCCCCC
Confidence 567899999999999987654
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=77.52 E-value=49 Score=31.34 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=58.8
Q ss_pred CCceEECceEEEEEeCCCCCCCEEEEEEcCCce--eEEEeCCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccC
Q 046476 205 RQGLCANGFIHWIITNPRKTKPVLAVFDVKEEK--FDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDY 282 (376)
Q Consensus 205 ~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~--~~~i~~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~ 282 (376)
..++..+|.+|..+. .+.+.+||..+++ |+ .+++... ....+..++.+++...+ . .++.++-.
T Consensus 59 ~~p~v~~~~v~v~~~-----~g~v~a~d~~tG~~~W~-~~~~~~~--~~~p~v~~~~v~v~~~~-----g--~l~ald~~ 123 (377)
T TIGR03300 59 LQPAVAGGKVYAADA-----DGTVVALDAETGKRLWR-VDLDERL--SGGVGADGGLVFVGTEK-----G--EVIALDAE 123 (377)
T ss_pred cceEEECCEEEEECC-----CCeEEEEEccCCcEeee-ecCCCCc--ccceEEcCCEEEEEcCC-----C--EEEEEECC
Confidence 456788999998876 6789999987654 43 2444432 12233445666554332 2 34555431
Q ss_pred CCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEE
Q 046476 283 GRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERR 342 (376)
Q Consensus 283 ~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~ 342 (376)
. .+..|... ++.... . .|+. .++.+++.. .++.++.+|+++++..
T Consensus 124 t--G~~~W~~~---~~~~~~--~--~p~v--~~~~v~v~~----~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 124 D--GKELWRAK---LSSEVL--S--PPLV--ANGLVVVRT----NDGRLTALDAATGERL 168 (377)
T ss_pred C--CcEeeeec---cCceee--c--CCEE--ECCEEEEEC----CCCeEEEEEcCCCcee
Confidence 1 25567643 221111 1 2222 245555544 5677888888776554
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.47 E-value=11 Score=35.32 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCceEECc-eEEEEEeCCC-------------C--------------------
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANG-FIHWIITNPR-------------K-------------------- 223 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~-------------~-------------------- 223 (376)
...+..|+..+++|.......|.......++..++ .+|+...-.. +
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d 191 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED 191 (381)
T ss_pred eeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH
Confidence 45678899999999998877665533555666666 8888764100 0
Q ss_pred --CCCEEEEEEcCCceeEEEe-CCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeec
Q 046476 224 --TKPVLAVFDVKEEKFDIVK-LPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRF 299 (376)
Q Consensus 224 --~~~~il~fDl~~e~~~~i~-~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~ 299 (376)
....+++||+.+++|+..- .|.....-...+.-+++|.++.....+.-.+-.+|+.+-.+ ++..|.+.-. ++.
T Consensus 192 y~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~--~~~~w~~l~~-lp~ 267 (381)
T COG3055 192 YFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGG--DNLKWLKLSD-LPA 267 (381)
T ss_pred hcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEecc--CceeeeeccC-CCC
Confidence 0346999999999999884 66654223344455667888877644455666777665333 4678999866 443
No 61
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=75.55 E-value=72 Score=29.96 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=73.4
Q ss_pred CceEEEEEeCCCCCCCEEEEEEcCCce--e---EEEeCCCcccCcceeEecCCe-EEEEEecCCCCCCeEEEEEEccCCC
Q 046476 211 NGFIHWIITNPRKTKPVLAVFDVKEEK--F---DIVKLPDEVRKHHDLIQAEEK-LGVLDCDDFRSKNKIRVWILKDYGR 284 (376)
Q Consensus 211 ~G~lywl~~~~~~~~~~il~fDl~~e~--~---~~i~~P~~~~~~~~L~~~~g~-L~~~~~~~~~~~~~~~IW~l~~~~~ 284 (376)
+|..-|.+. .+ .+.|..|+++.+. . ..+.+|.....+.....-+|+ ++++... ..++.++.++..
T Consensus 154 dg~~v~v~d--lG-~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~----s~~v~v~~~~~~-- 224 (345)
T PF10282_consen 154 DGRFVYVPD--LG-ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL----SNTVSVFDYDPS-- 224 (345)
T ss_dssp TSSEEEEEE--TT-TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT----TTEEEEEEEETT--
T ss_pred CCCEEEEEe--cC-CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC----CCcEEEEeeccc--
Confidence 577666666 34 6789999998765 4 345667654333333344655 5555544 788999988843
Q ss_pred CCCCceeEEEEEeeccccccc---CcEeEEEccCCcEEEEecccCCCcEEEEEeC--CCCcEEEEEE
Q 046476 285 GGGEVWIRRDYVFRFDTIMFR---PPIPVSNSNNGEILLTEYKSSLVSRVFIYDL--KTQERRAIKI 346 (376)
Q Consensus 285 g~~~~W~~~~~ii~~~~~~~~---~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl--~t~~~~~v~~ 346 (376)
+..++.... ++..+-.+. ...-+.+.++|+.+++... ..+.|.+|++ ++++++.+..
T Consensus 225 --~g~~~~~~~-~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 225 --DGSLTEIQT-ISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp --TTEEEEEEE-EESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTTTEEEEEE
T ss_pred --CCceeEEEE-eeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecCCCceEEEEE
Confidence 346777777 343221111 1244678889987776532 5677888887 5567876654
No 62
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=75.45 E-value=3.7 Score=26.16 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=17.6
Q ss_pred cceEEEEEe-----cCcEEEEEecCCcceecCCCCC
Q 046476 91 NGFICFYNI-----VGFEILMRNVVTQEIIDLPKST 121 (376)
Q Consensus 91 nGLl~~~~~-----~~~~~~V~NP~T~~~~~LP~~~ 121 (376)
+.++++... .-+.++++|+.|++|.++|++|
T Consensus 13 ~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 13 NSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 445555522 2336899999999999997765
No 63
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=75.13 E-value=74 Score=29.89 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=78.6
Q ss_pred CCeEEEEEcCCCC--eeecC--CCCCcceecCCceEECc-eEEEEEeCCCCCCCEEEEEEcC--CceeEEEe----CCCc
Q 046476 178 TPECEIFTLGTTS--WRKID--APPSRIHFRRQGLCANG-FIHWIITNPRKTKPVLAVFDVK--EEKFDIVK----LPDE 246 (376)
Q Consensus 178 ~~~~~vys~~t~~--Wr~~~--~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~il~fDl~--~e~~~~i~----~P~~ 246 (376)
...+.+|+.+... ..... ..++......-...-+| .+|.... ....|.+|++. +.++..++ +|..
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e----~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE----LSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET----TTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC----CCCcEEEEeecccCCceeEEEEeeecccc
Confidence 5788888887754 43311 11110000111112255 4555554 26678888887 66666653 3443
Q ss_pred c---cCcceeEec-CCe-EEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEE
Q 046476 247 V---RKHHDLIQA-EEK-LGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLT 321 (376)
Q Consensus 247 ~---~~~~~L~~~-~g~-L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~ 321 (376)
. .....+... +|+ |++.... .+.+.++.++.. ...-+++.. ++-... ..+-+.+..+|+.+++
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~----~~sI~vf~~d~~----~g~l~~~~~-~~~~G~---~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRG----SNSISVFDLDPA----TGTLTLVQT-VPTGGK---FPRHFAFSPDGRYLYV 308 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECT----TTEEEEEEECTT----TTTEEEEEE-EEESSS---SEEEEEE-TTSSEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEecc----CCEEEEEEEecC----CCceEEEEE-EeCCCC---CccEEEEeCCCCEEEE
Confidence 2 123344444 565 5555543 889999999653 233444444 332111 1155677788987776
Q ss_pred ecccCCCcEEEEE--eCCCCcEEEEE
Q 046476 322 EYKSSLVSRVFIY--DLKTQERRAIK 345 (376)
Q Consensus 322 ~~~~~~~~~v~~y--dl~t~~~~~v~ 345 (376)
... ..+.|.+| |.+++.++.+.
T Consensus 309 a~~--~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 309 ANQ--DSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EET--TTTEEEEEEEETTTTEEEEEE
T ss_pred Eec--CCCeEEEEEEeCCCCcEEEec
Confidence 543 34455555 66788888764
No 64
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=74.70 E-value=59 Score=32.74 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=68.3
Q ss_pred cCCceEECceEEEEEeCCCCCCCEEEEEEcCC--ceeEEE-eCCCccc-------CcceeEecCCeEEEEEecCCCCCCe
Q 046476 204 RRQGLCANGFIHWIITNPRKTKPVLAVFDVKE--EKFDIV-KLPDEVR-------KHHDLIQAEEKLGVLDCDDFRSKNK 273 (376)
Q Consensus 204 ~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~--e~~~~i-~~P~~~~-------~~~~L~~~~g~L~~~~~~~~~~~~~ 273 (376)
...++..+|.+|.... ...|.++|..+ +.|+.- ..|.... ....+...+|++++...+ .
T Consensus 62 ~stPvv~~g~vyv~s~-----~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d----g-- 130 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTS-----YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD----A-- 130 (527)
T ss_pred ccCCEEECCEEEEECC-----CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC----C--
Confidence 4567889999999766 66899999886 456542 2332210 112234557777665433 1
Q ss_pred EEEEEEccCCCCCCCceeEEEEEeeccccccc-CcEeEEEccCCcEEEEecc--cCCCcEEEEEeCCCCcEEEE
Q 046476 274 IRVWILKDYGRGGGEVWIRRDYVFRFDTIMFR-PPIPVSNSNNGEILLTEYK--SSLVSRVFIYDLKTQERRAI 344 (376)
Q Consensus 274 ~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~-~~~~v~~~~~g~il~~~~~--~~~~~~v~~ydl~t~~~~~v 344 (376)
.|..|+-.. .+..|..... ..... .. ...|+.. ++.|++.... ...++.|+++|++|++..+-
T Consensus 131 -~l~ALDa~T--Gk~~W~~~~~--~~~~~-~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 131 -RLVALDAKT--GKVVWSKKNG--DYKAG-YTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred -EEEEEECCC--CCEEeecccc--ccccc-ccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 466666432 3677876432 11110 00 1134332 4556554311 11257899999999987654
No 65
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=73.45 E-value=84 Score=31.01 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=26.1
Q ss_pred EECceEEEEEeCCC------CCCCEEEEEEcCCceeEEEeCCCcc
Q 046476 209 CANGFIHWIITNPR------KTKPVLAVFDVKEEKFDIVKLPDEV 247 (376)
Q Consensus 209 ~~~G~lywl~~~~~------~~~~~il~fDl~~e~~~~i~~P~~~ 247 (376)
..+|-+|-|+.-.. +++..|..+|-.=.+-+.+++|+..
T Consensus 285 aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhc
Confidence 44566666654111 2367899999666778888999875
No 66
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=73.20 E-value=84 Score=29.65 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=62.3
Q ss_pred CCEEEEEEcCCceeEEEeCCCcccCcceeEecCCeEEEEEecCCCCCC------eEEEEEEccCC--CCCCCceeEEEEE
Q 046476 225 KPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKN------KIRVWILKDYG--RGGGEVWIRRDYV 296 (376)
Q Consensus 225 ~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~------~~~IW~l~~~~--~g~~~~W~~~~~i 296 (376)
...++.||+++......|...........+..+|+|++.......... .+++-...... .+....|.-..
T Consensus 85 ~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~-- 162 (342)
T PF07893_consen 85 SGRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS-- 162 (342)
T ss_pred CCCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc--
Confidence 455899999998887544322222233344558889988776311111 66666544210 01345566543
Q ss_pred eecccccccC------cEeEEEccCCc-EEEEecccCCCc--EEEEEeCCCCcEEEE
Q 046476 297 FRFDTIMFRP------PIPVSNSNNGE-ILLTEYKSSLVS--RVFIYDLKTQERRAI 344 (376)
Q Consensus 297 i~~~~~~~~~------~~~v~~~~~g~-il~~~~~~~~~~--~v~~ydl~t~~~~~v 344 (376)
+|+-++.... ...-++. +|. |++.. ... .-+.||.++.+|+++
T Consensus 163 LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~----~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 163 LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSV----NGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred CCCCCccccCCcccceEEEEEEe-cCCeEEEEe----cCCceEEEEEEcCCcceeec
Confidence 3442331111 1222555 555 55545 333 799999999999987
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=72.31 E-value=69 Score=28.23 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=66.3
Q ss_pred CceEEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcccCcceeEe-cCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCc
Q 046476 211 NGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQ-AEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEV 289 (376)
Q Consensus 211 ~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~-~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~ 289 (376)
+|.+||.-.. ...|..+|+.+++...+..|.. ...... -+|+|+++... .+ .++ +. ....
T Consensus 11 ~g~l~~~D~~----~~~i~~~~~~~~~~~~~~~~~~---~G~~~~~~~g~l~v~~~~------~~--~~~-d~---~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDIP----GGRIYRVDPDTGEVEVIDLPGP---NGMAFDRPDGRLYVADSG------GI--AVV-DP---DTGK 71 (246)
T ss_dssp TTEEEEEETT----TTEEEEEETTTTEEEEEESSSE---EEEEEECTTSEEEEEETT------CE--EEE-ET---TTTE
T ss_pred CCEEEEEEcC----CCEEEEEECCCCeEEEEecCCC---ceEEEEccCCEEEEEEcC------ce--EEE-ec---CCCc
Confidence 6999998752 6789999999999999988773 222233 46888777643 22 222 33 2456
Q ss_pred eeEEEEEeecccccccCcEeEEEccCCcEEEEeccc---CCC--cEEEEEeCCCCcEEEE
Q 046476 290 WIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKS---SLV--SRVFIYDLKTQERRAI 344 (376)
Q Consensus 290 W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~---~~~--~~v~~ydl~t~~~~~v 344 (376)
++.... .+.........--+++..+|++++..... ... +.++.++++ ++.+.+
T Consensus 72 ~~~~~~-~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 72 VTVLAD-LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEEE-EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEEEee-ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 777766 43211001111235777788877775321 111 568888888 555444
No 68
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=70.43 E-value=97 Score=29.17 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=66.7
Q ss_pred CCceEEC--ceEEEEEeCCCCCCCEEEEEEcCCceeEEE---eCCC-c-c-----cCcceeEec---CCeEEEEEecCC-
Q 046476 205 RQGLCAN--GFIHWIITNPRKTKPVLAVFDVKEEKFDIV---KLPD-E-V-----RKHHDLIQA---EEKLGVLDCDDF- 268 (376)
Q Consensus 205 ~~~v~~~--G~lywl~~~~~~~~~~il~fDl~~e~~~~i---~~P~-~-~-----~~~~~L~~~---~g~L~~~~~~~~- 268 (376)
..+++.+ |.+||.+. .+.|...|++.+.-... ++-. . . ..-.++..+ .|+|+++-....
T Consensus 187 ~~~~~~~~~~~~~F~Sy-----~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSY-----EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp S--EEETTTTEEEEEBT-----TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred cccceECCCCeEEEEec-----CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 4455543 68999888 89999999998764433 2211 1 1 122344433 778987654311
Q ss_pred --CCCCeEEEEEEccCCCCCCCceeEEEEEeec-ccccccCcEeEEEccCCc-EEEEecccCCCcEEEEEeCCCCcEEE
Q 046476 269 --RSKNKIRVWILKDYGRGGGEVWIRRDYVFRF-DTIMFRPPIPVSNSNNGE-ILLTEYKSSLVSRVFIYDLKTQERRA 343 (376)
Q Consensus 269 --~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~-~~~~~~~~~~v~~~~~g~-il~~~~~~~~~~~v~~ydl~t~~~~~ 343 (376)
-+...-+||+++-. . =.++.+ |+- .+. ..+++..+++ +|+... ..+..+++||..|.+...
T Consensus 262 gsHKdpgteVWv~D~~----t--~krv~R-i~l~~~~-----~Si~Vsqd~~P~L~~~~--~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLK----T--HKRVAR-IPLEHPI-----DSIAVSQDDKPLLYALS--AGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp T-TTS-EEEEEEEETT----T--TEEEEE-EEEEEEE-----SEEEEESSSS-EEEEEE--TTTTEEEEEETTT--EEE
T ss_pred CCccCCceEEEEEECC----C--CeEEEE-EeCCCcc-----ceEEEccCCCcEEEEEc--CCCCeEEEEeCcCCcEEe
Confidence 13456899999853 1 234444 342 121 3566777665 554331 146789999999986654
No 69
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=68.99 E-value=93 Score=28.41 Aligned_cols=225 Identities=14% Similarity=0.157 Sum_probs=118.1
Q ss_pred ecccccceEEEEEecCcEEEEEecCCcceecCCCCCcccCCC-CCCCCCCccceeeEE--EEE-EeCCCCCeEEEEEEec
Q 046476 86 VTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDD-DEDFSGPMISYFREY--FLG-FDPSSRDYKVLNISNK 161 (376)
Q Consensus 86 ~~~s~nGLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~~~~~~~~~--~~g-~d~~~~~ykVv~~~~~ 161 (376)
+--+-+|-|-+.......+=-.||.||+..+.|-.....++. ..+.+. ..+.... +++ +|+.+..++=+-+...
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg--~~Witd~~~aI~R~dpkt~evt~f~lp~~ 144 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDG--SAWITDTGLAIGRLDPKTLEVTRFPLPLE 144 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCC--CeeEecCcceeEEecCcccceEEeecccc
Confidence 333456777776545555667799999999988765554310 000000 0001111 111 2343433332222211
Q ss_pred CCCCCCcccceecCCCCCeEEEEEcCCCCeeecCCCC-----Cc---------cee-cCCceEE--CceEEEEEeCCCCC
Q 046476 162 HTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPP-----SR---------IHF-RRQGLCA--NGFIHWIITNPRKT 224 (376)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~vys~~t~~Wr~~~~~~-----~~---------~~~-~~~~v~~--~G~lywl~~~~~~~ 224 (376)
. .....+--||+-..+.|-+...-. |. ... ..+++++ ||.+|+-.. .
T Consensus 145 ~------------a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasl----a 208 (353)
T COG4257 145 H------------ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASL----A 208 (353)
T ss_pred c------------CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEec----c
Confidence 1 223566778888888887643211 10 011 3445555 799988754 1
Q ss_pred CCEEEEEEcCCceeEEEeCCCcc--cCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccc
Q 046476 225 KPVLAVFDVKEEKFDIVKLPDEV--RKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTI 302 (376)
Q Consensus 225 ~~~il~fDl~~e~~~~i~~P~~~--~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~ 302 (376)
.+.|.-.|+.+..-+.++.|... ..+..=...-|++...... .=.+-..+-. ..+|.. +. +|...-
T Consensus 209 gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg------~g~l~rfdPs----~~sW~e-yp-LPgs~a 276 (353)
T COG4257 209 GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG------TGSLHRFDPS----VTSWIE-YP-LPGSKA 276 (353)
T ss_pred ccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC------CceeeEeCcc----ccccee-ee-CCCCCC
Confidence 67899999999988888888863 1111112223333333211 1112222322 345765 44 443221
Q ss_pred cccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEEEE
Q 046476 303 MFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKI 346 (376)
Q Consensus 303 ~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~~ 346 (376)
....+.+...|.+.+..- ..+.+.-+|++|.++..+-+
T Consensus 277 ---rpys~rVD~~grVW~sea---~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 277 ---RPYSMRVDRHGRVWLSEA---DAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ---CcceeeeccCCcEEeecc---ccCceeecCcccceEEEecC
Confidence 113345555677777542 56789999999999887754
No 70
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=68.44 E-value=1.1e+02 Score=29.01 Aligned_cols=141 Identities=12% Similarity=0.097 Sum_probs=81.6
Q ss_pred CeEEEEEcCCCCeeecCCCCCcceecCC-ceEECceEEEEEeCCCCCCCEEEEEEcCCce--eEEEeCCCcccCcceeEe
Q 046476 179 PECEIFTLGTTSWRKIDAPPSRIHFRRQ-GLCANGFIHWIITNPRKTKPVLAVFDVKEEK--FDIVKLPDEVRKHHDLIQ 255 (376)
Q Consensus 179 ~~~~vys~~t~~Wr~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~il~fDl~~e~--~~~i~~P~~~~~~~~L~~ 255 (376)
........++..|............... .+..||.+|.... .+.|.+||.++.+ |+.-..+.......-+..
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~-----~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~ 109 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTR-----DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILG 109 (370)
T ss_pred eEEEcccCcceeeeeecccCccceEeccccEeeCCeEEEecC-----CCcEEEEeCCCCcEEecccCcCcceeccCceEE
Confidence 4444555566778643111111122333 5999999999876 6789999999876 654333200011222333
Q ss_pred cCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEe
Q 046476 256 AEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYD 335 (376)
Q Consensus 256 ~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~yd 335 (376)
.+|+|++-... . .++.|++.. .+..|..... .... +. .+ .+..++.+++.. .++.++..|
T Consensus 110 ~~G~i~~g~~~----g---~~y~ld~~~--G~~~W~~~~~---~~~~-~~--~~-~v~~~~~v~~~s----~~g~~~al~ 169 (370)
T COG1520 110 SDGKIYVGSWD----G---KLYALDAST--GTLVWSRNVG---GSPY-YA--SP-PVVGDGTVYVGT----DDGHLYALN 169 (370)
T ss_pred eCCeEEEeccc----c---eEEEEECCC--CcEEEEEecC---CCeE-Ee--cC-cEEcCcEEEEec----CCCeEEEEE
Confidence 38887665544 2 788888731 3677887655 2110 10 11 223466777765 578899999
Q ss_pred CCCCcEEEE
Q 046476 336 LKTQERRAI 344 (376)
Q Consensus 336 l~t~~~~~v 344 (376)
.++.+.++.
T Consensus 170 ~~tG~~~W~ 178 (370)
T COG1520 170 ADTGTLKWT 178 (370)
T ss_pred ccCCcEEEE
Confidence 988877654
No 71
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=68.44 E-value=88 Score=27.92 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=74.1
Q ss_pred cCCceEECceEEEEEeCCCCCCCEEEEEEcCCce-eEEEeCCCcc-----------cCcceeEecCCeEEEEEecCCCCC
Q 046476 204 RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEK-FDIVKLPDEV-----------RKHHDLIQAEEKLGVLDCDDFRSK 271 (376)
Q Consensus 204 ~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~-~~~i~~P~~~-----------~~~~~L~~~~g~L~~~~~~~~~~~ 271 (376)
...-|..||.+|+.... ...|+-||++++. .....+|... .....+++-+..|.++.... ...
T Consensus 70 gTg~VVynGs~yynk~~----t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~-~~~ 144 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAG----TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATP-ENA 144 (249)
T ss_pred ccceEEEcceEEeeccC----CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEeccc-ccC
Confidence 56678999999998762 6679999999953 3344555543 34577788888888777663 345
Q ss_pred CeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEE-EEEeCCCCcEEEEEE
Q 046476 272 NKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRV-FIYDLKTQERRAIKI 346 (376)
Q Consensus 272 ~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v-~~ydl~t~~~~~v~~ 346 (376)
..+.|=.|+...=-.+..|.-.. +.... .. ++.-.|.+..+.........+ ++||..+++-+.+.+
T Consensus 145 g~iv~skLdp~tl~~e~tW~T~~---~k~~~--~~----aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 145 GTIVLSKLDPETLEVERTWNTTL---PKRSA--GN----AFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred CcEEeeccCHHHhheeeeecccc---CCCCc--Cc----eEEEeeeeEEEeccccCCceEEEEEEcCCCceecccc
Confidence 56666777652000123343221 11111 11 111124444443222233344 799999888877665
No 72
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=67.93 E-value=12 Score=23.77 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=30.3
Q ss_pred ceeEecCCeEEEEEec--CCCCCCeEEEEEEccCCCCCCCceeEEEE
Q 046476 251 HDLIQAEEKLGVLDCD--DFRSKNKIRVWILKDYGRGGGEVWIRRDY 295 (376)
Q Consensus 251 ~~L~~~~g~L~~~~~~--~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ 295 (376)
...+..+++|+++... .......-++|+++. ++..|+++..
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~----~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDT----ETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEEC----CCCEEeecCC
Confidence 4567789999998876 334566788999986 4688998644
No 73
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=67.88 E-value=1.5e+02 Score=31.41 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=26.2
Q ss_pred cCCceEECceEEEEEeCCCCCCCEEEEEEcCC--ceeEE
Q 046476 204 RRQGLCANGFIHWIITNPRKTKPVLAVFDVKE--EKFDI 240 (376)
Q Consensus 204 ~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~--e~~~~ 240 (376)
...++.++|.+|..+. .+.++++|..+ +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~-----~~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTP-----HNKVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECC-----CCeEEEEECCCCcEEEEE
Confidence 5778999999999877 77899999886 45654
No 74
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=67.28 E-value=9 Score=23.22 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=19.4
Q ss_pred cCCceEECceEEEEEeCCCCCCCEEEEEEcCC
Q 046476 204 RRQGLCANGFIHWIITNPRKTKPVLAVFDVKE 235 (376)
Q Consensus 204 ~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~ 235 (376)
....++.+|.+|.-+. .+.+.+||.++
T Consensus 14 ~~~~~v~~g~vyv~~~-----dg~l~ald~~t 40 (40)
T PF13570_consen 14 WSSPAVAGGRVYVGTG-----DGNLYALDAAT 40 (40)
T ss_dssp -S--EECTSEEEEE-T-----TSEEEEEETT-
T ss_pred CcCCEEECCEEEEEcC-----CCEEEEEeCCC
Confidence 3456888999999887 88999999875
No 75
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=66.98 E-value=1.3e+02 Score=29.34 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=57.9
Q ss_pred CCEEEEEEcCCceeEEEeCCCccc-Ccce-eEec-CCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeeccc
Q 046476 225 KPVLAVFDVKEEKFDIVKLPDEVR-KHHD-LIQA-EEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDT 301 (376)
Q Consensus 225 ~~~il~fDl~~e~~~~i~~P~~~~-~~~~-L~~~-~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~ 301 (376)
..++.+||+++.+...+..|.... ..+. .-+. .+...++... ...|.+--.+ ...|...+. |+.
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----~G~I~lLhak------T~eli~s~K-ieG-- 345 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----NGHIHLLHAK------TKELITSFK-IEG-- 345 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc----CceEEeehhh------hhhhhheee-ecc--
Confidence 778999999999999998877651 1111 1111 3332222222 3333333322 234655555 332
Q ss_pred ccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEE
Q 046476 302 IMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAI 344 (376)
Q Consensus 302 ~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v 344 (376)
...-+.+..+++.++... ..+.|++||++++.....
T Consensus 346 ----~v~~~~fsSdsk~l~~~~---~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 346 ----VVSDFTFSSDSKELLASG---GTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred ----EEeeEEEecCCcEEEEEc---CCceEEEEecCCcceEEE
Confidence 113455556777665552 688999999999976544
No 76
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=65.89 E-value=1.2e+02 Score=28.62 Aligned_cols=134 Identities=14% Similarity=0.185 Sum_probs=68.2
Q ss_pred CeEEEEEcCCC--CeeecCCCCCccee-cCCceEECceEEEEEeCCCCCCCEEEEEEcCCc--eeEE-EeCCCcc-----
Q 046476 179 PECEIFTLGTT--SWRKIDAPPSRIHF-RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEE--KFDI-VKLPDEV----- 247 (376)
Q Consensus 179 ~~~~vys~~t~--~Wr~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e--~~~~-i~~P~~~----- 247 (376)
..+..++..++ .|+.....+..... ...++..+|.+|.-.. .+.+.++|++++ .|+. +..|...
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~-----~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA-----GGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC-----CCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 44666777665 48764433221111 3556778888776544 678999999775 4532 2223211
Q ss_pred --cCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEeccc
Q 046476 248 --RKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKS 325 (376)
Q Consensus 248 --~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~ 325 (376)
.........+|.+++.... ..+..+-++. .+..|..... . .. .|. + .++.|++..
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~-----g~l~a~d~~t----G~~~W~~~~~---~-~~-----~p~-~-~~~~vyv~~--- 286 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQ-----GRVAALDLRS----GRVLWKRDAS---S-YQ-----GPA-V-DDNRLYVTD--- 286 (377)
T ss_pred hhccCCccEEECCEEEEEEcC-----CEEEEEECCC----CcEEEeeccC---C-cc-----Cce-E-eCCEEEEEC---
Confidence 0112223446666665432 3344443332 2456765411 1 00 121 1 245555554
Q ss_pred CCCcEEEEEeCCCCcE
Q 046476 326 SLVSRVFIYDLKTQER 341 (376)
Q Consensus 326 ~~~~~v~~ydl~t~~~ 341 (376)
.++.++++|.++++.
T Consensus 287 -~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 287 -ADGVVVALDRRSGSE 301 (377)
T ss_pred -CCCeEEEEECCCCcE
Confidence 566777777776654
No 77
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=65.65 E-value=1.3e+02 Score=28.88 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=66.9
Q ss_pred EECceEEEEEeCCCCCCCEEEEEEcCCce---eEEEeCCCcc-cCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCC
Q 046476 209 CANGFIHWIITNPRKTKPVLAVFDVKEEK---FDIVKLPDEV-RKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGR 284 (376)
Q Consensus 209 ~~~G~lywl~~~~~~~~~~il~fDl~~e~---~~~i~~P~~~-~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~ 284 (376)
..++.+|.++.. ....+.|++.|+++-. |..+-.|... ..-..+...++.|.+.... .....+.|+-++
T Consensus 285 ~~~~~~yi~Tn~-~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~--~~~~~l~v~~~~---- 357 (414)
T PF02897_consen 285 HHGDRLYILTND-DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE--NGSSRLRVYDLD---- 357 (414)
T ss_dssp EETTEEEEEE-T-T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE--TTEEEEEEEETT----
T ss_pred ccCCEEEEeeCC-CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE--CCccEEEEEECC----
Confidence 347788887762 2236899999999765 5533233221 1223344568888887776 234445555443
Q ss_pred CCCCceeEEEEEeecccccccCcEeEEE-ccCCcEEEEecccCCCcEEEEEeCCCCcEEEEEE
Q 046476 285 GGGEVWIRRDYVFRFDTIMFRPPIPVSN-SNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKI 346 (376)
Q Consensus 285 g~~~~W~~~~~ii~~~~~~~~~~~~v~~-~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~~ 346 (376)
..|.....-++. . .....+.. ...+.+.+..........++.||+++++.+.++-
T Consensus 358 ---~~~~~~~~~~p~--~--g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 358 ---DGKESREIPLPE--A--GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp ----TEEEEEEESSS--S--SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred ---CCcEEeeecCCc--c--eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 124443331221 1 10011221 2245566665445567899999999999987753
No 78
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=65.55 E-value=17 Score=20.57 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=19.5
Q ss_pred CCcEEEEecccCCCcEEEEEeCCCCcEEE
Q 046476 315 NGEILLTEYKSSLVSRVFIYDLKTQERRA 343 (376)
Q Consensus 315 ~g~il~~~~~~~~~~~v~~ydl~t~~~~~ 343 (376)
+|.+++.. .++.++++|.++++..+
T Consensus 6 ~~~v~~~~----~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGS----TDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEc----CCCEEEEEEcccCcEEE
Confidence 45666665 78999999999887765
No 79
>PLN02772 guanylate kinase
Probab=63.94 E-value=29 Score=33.36 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=60.4
Q ss_pred cceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCc
Q 046476 250 HHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVS 329 (376)
Q Consensus 250 ~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~ 329 (376)
...-+..+++++++....+....+..||++|.. ...|..--. .+..+. -+.....++.++++|++...+...+.
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~----t~~W~~P~V-~G~~P~-~r~GhSa~v~~~~rilv~~~~~~~~~ 100 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKI----TNNWVSPIV-LGTGPK-PCKGYSAVVLNKDRILVIKKGSAPDD 100 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECC----CCcEecccc-cCCCCC-CCCcceEEEECCceEEEEeCCCCCcc
Confidence 455678899999999765444467899999974 678988655 454443 11234455567888888876655677
Q ss_pred EEEEEeCCCCcEE
Q 046476 330 RVFIYDLKTQERR 342 (376)
Q Consensus 330 ~v~~ydl~t~~~~ 342 (376)
.+++..++|.-++
T Consensus 101 ~~w~l~~~t~~~~ 113 (398)
T PLN02772 101 SIWFLEVDTPFVR 113 (398)
T ss_pred ceEEEEcCCHHHH
Confidence 8888888876554
No 80
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=63.50 E-value=17 Score=21.84 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=19.2
Q ss_pred cEEEEecccCCCcEEEEEeCCCCcEEEEE
Q 046476 317 EILLTEYKSSLVSRVFIYDLKTQERRAIK 345 (376)
Q Consensus 317 ~il~~~~~~~~~~~v~~ydl~t~~~~~v~ 345 (376)
.|++.. .++.++++|.+|++..+-.
T Consensus 2 ~v~~~~----~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 2 RVYVGT----PDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEEET----TTSEEEEEETTTTSEEEEE
T ss_pred EEEEeC----CCCEEEEEECCCCCEEEee
Confidence 345544 7899999999999887653
No 81
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=60.93 E-value=32 Score=26.64 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=30.9
Q ss_pred CcEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEe
Q 046476 101 GFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISN 160 (376)
Q Consensus 101 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~ 160 (376)
...+.+.||.|+.|. |..+... + .....+-+++..+.|.|+...-
T Consensus 8 rA~Vm~~d~~tk~W~--P~~~~~~-----~--------ls~V~~~~~~~~~~yrIvg~~~ 52 (111)
T cd01207 8 RASVMVYDDSNKKWV--PAGGGSQ-----G--------FSRVQIYHHPRNNTFRVVGRKL 52 (111)
T ss_pred EEEeeEEcCCCCcEE--cCCCCCC-----C--------cceEEEEEcCCCCEEEEEEeec
Confidence 345788999999865 4333111 0 2567777889899999998653
No 82
>PLN00181 protein SPA1-RELATED; Provisional
Probab=59.17 E-value=2.5e+02 Score=29.90 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=53.8
Q ss_pred CCEEEEEEcCCceeEEEeCCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccc
Q 046476 225 KPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMF 304 (376)
Q Consensus 225 ~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~ 304 (376)
++.|..||+.+.+-....+......-..+.-.++...+.... ...+.||-+.... ....|..+.. +..+..
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~----D~~ikiWd~~~~~--~~~~~~~l~~-~~gh~~-- 709 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSST----DNTLKLWDLSMSI--SGINETPLHS-FMGHTN-- 709 (793)
T ss_pred CCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEEC----CCEEEEEeCCCCc--cccCCcceEE-EcCCCC--
Confidence 678999999865321111111111112222235554444433 6789999886431 1234555555 443322
Q ss_pred cCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCC
Q 046476 305 RPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQ 339 (376)
Q Consensus 305 ~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~ 339 (376)
....+++..++.++... +.++.+.+||..+.
T Consensus 710 -~i~~v~~s~~~~~lasg---s~D~~v~iw~~~~~ 740 (793)
T PLN00181 710 -VKNFVGLSVSDGYIATG---SETNEVFVYHKAFP 740 (793)
T ss_pred -CeeEEEEcCCCCEEEEE---eCCCEEEEEECCCC
Confidence 11335666666666554 26788889987655
No 83
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=59.13 E-value=40 Score=20.81 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=31.8
Q ss_pred cceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEE
Q 046476 250 HHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDY 295 (376)
Q Consensus 250 ~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ 295 (376)
....+..+++|+++..........-.+|+++- ++..|+..-.
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~----~~~~W~~~~~ 45 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDP----ETNTWEELPP 45 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEET----TTTEEEEEEE
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeC----CCCEEEEcCC
Confidence 45678889999999987433566778888876 3678999766
No 84
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=58.63 E-value=11 Score=24.02 Aligned_cols=23 Identities=4% Similarity=-0.084 Sum_probs=18.7
Q ss_pred cEEEEEecCCcceecCCCCCccc
Q 046476 102 FEILMRNVVTQEIIDLPKSTFVV 124 (376)
Q Consensus 102 ~~~~V~NP~T~~~~~LP~~~~~~ 124 (376)
+.++++||.|++|.+++..|..+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 46899999999999997765544
No 85
>PLN02772 guanylate kinase
Probab=58.56 E-value=61 Score=31.22 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=50.9
Q ss_pred cCCceEECceEEEEEeCCCC--CCCEEEEEEcCCceeEEEe----CCCcccCcceeEecCCeEEEEEecCCCCCCeEEEE
Q 046476 204 RRQGLCANGFIHWIITNPRK--TKPVLAVFDVKEEKFDIVK----LPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVW 277 (376)
Q Consensus 204 ~~~~v~~~G~lywl~~~~~~--~~~~il~fDl~~e~~~~i~----~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW 277 (376)
....+.++..+|..+..... ....+.+||..+.+|..-. .|.........+.-+++|-++-... ...=+||
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~---~~~~~~w 103 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS---APDDSIW 103 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC---CCccceE
Confidence 56788899999999863222 2457999999999998643 2332234444555588887776542 3346899
Q ss_pred EEcc
Q 046476 278 ILKD 281 (376)
Q Consensus 278 ~l~~ 281 (376)
.|+-
T Consensus 104 ~l~~ 107 (398)
T PLN02772 104 FLEV 107 (398)
T ss_pred EEEc
Confidence 9963
No 86
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=55.10 E-value=1.3e+02 Score=27.35 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCEEEEEEcCCceeEEEeCCCcccCcceeEec-CCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeec-ccc
Q 046476 225 KPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQA-EEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRF-DTI 302 (376)
Q Consensus 225 ~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~-~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~-~~~ 302 (376)
+..+-++|+++-+....-.-.. ..-..+.+. +|.||..... ..++.+|-|++. .. .++ ++. ..+
T Consensus 171 DktvKvWnl~~~~l~~~~~gh~-~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~---k~-----lys-l~a~~~v 236 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTTFIGHS-GYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEG---KN-----LYS-LEAFDIV 236 (315)
T ss_pred CceEEEEccCCcchhhcccccc-ccEEEEEECCCCCEEecCCC----CceEEEEEccCC---ce-----eEe-ccCCCeE
Q ss_pred cccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcE
Q 046476 303 MFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQER 341 (376)
Q Consensus 303 ~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~ 341 (376)
..+++.++.=.+... ....+-+||++++..
T Consensus 237 -----~sl~fspnrywL~~a----t~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 237 -----NSLCFSPNRYWLCAA----TATSIKIWDLESKAV 266 (315)
T ss_pred -----eeEEecCCceeEeec----cCCceEEEeccchhh
No 87
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=54.54 E-value=1.7e+02 Score=26.55 Aligned_cols=141 Identities=15% Similarity=0.108 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCCCCCEEEEEEcCC-ceeEEEeCCCcccCcceeEec
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKE-EKFDIVKLPDEVRKHHDLIQA 256 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~-e~~~~i~~P~~~~~~~~L~~~ 256 (376)
...+..+++.|++=......++. .+.-.-+.+++.+|-|+.. .+..+.||.++ +.-..++.|.+ -..|+.-
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d~l~qLTWk----~~~~f~yd~~tl~~~~~~~y~~E---GWGLt~d 138 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGDKLYQLTWK----EGTGFVYDPNTLKKIGTFPYPGE---GWGLTSD 138 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESS----SSEEEEEETTTTEEEEEEE-SSS-----EEEEC
T ss_pred cEEEEEEECCCCcEEEEEECCcc-ccceeEEEECCEEEEEEec----CCeEEEEccccceEEEEEecCCc---ceEEEcC
Confidence 67888899999865443333221 2234446779999999983 68899999986 34445566643 4556666
Q ss_pred CCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeec--ccccccCcEeEEEccCCcEEEEecccCCCcEEEEE
Q 046476 257 EEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRF--DTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIY 334 (376)
Q Consensus 257 ~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~--~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~y 334 (376)
+..|.+...+. .|+.++.. ....+.+ |.. ....+...--+.+ -+|.|+.... ....++.-
T Consensus 139 g~~Li~SDGS~-------~L~~~dP~------~f~~~~~-i~V~~~g~pv~~LNELE~-i~G~IyANVW---~td~I~~I 200 (264)
T PF05096_consen 139 GKRLIMSDGSS-------RLYFLDPE------TFKEVRT-IQVTDNGRPVSNLNELEY-INGKIYANVW---QTDRIVRI 200 (264)
T ss_dssp SSCEEEE-SSS-------EEEEE-TT------T-SEEEE-EE-EETTEE---EEEEEE-ETTEEEEEET---TSSEEEEE
T ss_pred CCEEEEECCcc-------ceEEECCc------ccceEEE-EEEEECCEECCCcEeEEE-EcCEEEEEeC---CCCeEEEE
Confidence 66666655432 45666532 2444444 221 1100011111222 2677775542 57788889
Q ss_pred eCCCCcEEEE
Q 046476 335 DLKTQERRAI 344 (376)
Q Consensus 335 dl~t~~~~~v 344 (376)
|++|+++...
T Consensus 201 dp~tG~V~~~ 210 (264)
T PF05096_consen 201 DPETGKVVGW 210 (264)
T ss_dssp ETTT-BEEEE
T ss_pred eCCCCeEEEE
Confidence 9998888754
No 88
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=53.11 E-value=39 Score=34.13 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=60.4
Q ss_pred CCEEEEEEcCCceeEE----EeCCCcc-cCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeec
Q 046476 225 KPVLAVFDVKEEKFDI----VKLPDEV-RKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRF 299 (376)
Q Consensus 225 ~~~il~fDl~~e~~~~----i~~P~~~-~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~ 299 (376)
++.|.-||....+|+. +..|.-. ...++|.-..|..+++... +..++..|-++..+ -.+ .... +++
T Consensus 73 ~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas---GDsT~r~Wdvk~s~--l~G---~~~~-~GH 143 (720)
T KOG0321|consen 73 DGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS---GDSTIRPWDVKTSR--LVG---GRLN-LGH 143 (720)
T ss_pred CCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc---CCceeeeeeeccce--eec---ceee-ccc
Confidence 7889999999988881 1223222 3345555556888888876 48899999988652 000 0011 221
Q ss_pred ccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEE
Q 046476 300 DTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERR 342 (376)
Q Consensus 300 ~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~ 342 (376)
.. ....+|+...+..+|..- ..++.+.+||.+.+.+.
T Consensus 144 -~~---SvkS~cf~~~n~~vF~tG--gRDg~illWD~R~n~~d 180 (720)
T KOG0321|consen 144 -TG---SVKSECFMPTNPAVFCTG--GRDGEILLWDCRCNGVD 180 (720)
T ss_pred -cc---ccchhhhccCCCcceeec--cCCCcEEEEEEeccchh
Confidence 11 112345555555555542 25777888888776643
No 89
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=50.53 E-value=2.3e+02 Score=28.08 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=36.3
Q ss_pred CCEEEEEEcCCceeEEE-eCCCcccCcceeE-ecCCeEEEEEecCCCCCCeEEEEEEcc
Q 046476 225 KPVLAVFDVKEEKFDIV-KLPDEVRKHHDLI-QAEEKLGVLDCDDFRSKNKIRVWILKD 281 (376)
Q Consensus 225 ~~~il~fDl~~e~~~~i-~~P~~~~~~~~L~-~~~g~L~~~~~~~~~~~~~~~IW~l~~ 281 (376)
...+-.+|+.+.+-++- ++|........|. ..+-+||+.+.. ...|.||-|.+
T Consensus 486 astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs----dGnI~vwDLhn 540 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS----DGNIAVWDLHN 540 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc----CCcEEEEEccc
Confidence 45678899988776653 4444332233343 448899999987 78999998875
No 90
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=49.15 E-value=49 Score=25.43 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=30.3
Q ss_pred CcEEEEEecCCc-ceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEE
Q 046476 101 GFEILMRNVVTQ-EIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNIS 159 (376)
Q Consensus 101 ~~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 159 (376)
...+++++|.|+ .|...- + . .....+-+|+..+.|+||.+.
T Consensus 10 rA~V~~yd~~tKk~WvPs~--~--~--------------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPAS--K--H--------------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeCC--C--C--------------ceeEEEEecCCCcEEEEEEec
Confidence 346889999986 776333 2 1 256778889999999999864
No 91
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=48.68 E-value=83 Score=28.10 Aligned_cols=82 Identities=10% Similarity=0.115 Sum_probs=49.2
Q ss_pred CCeEEEEEEccCCC--CCCCceeEEEEEeeccc--ccccCcEeEEEc-cCCcEEEEecccCCCcEEEEEeCCCCcEEEEE
Q 046476 271 KNKIRVWILKDYGR--GGGEVWIRRDYVFRFDT--IMFRPPIPVSNS-NNGEILLTEYKSSLVSRVFIYDLKTQERRAIK 345 (376)
Q Consensus 271 ~~~~~IW~l~~~~~--g~~~~W~~~~~ii~~~~--~~~~~~~~v~~~-~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~ 345 (376)
...+.=|...|... +-+..|+.+ +|+.. ......-.+.+. ..+.|++.. ++..++.+|++++++++.
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~---~P~~~~~~evPeINam~ldP~enSi~~Ag----GD~~~y~~dlE~G~i~r~- 151 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVK---IPMQVDAVEVPEINAMWLDPSENSILFAG----GDGVIYQVDLEDGRIQRE- 151 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhc---CccccCcccCCccceeEeccCCCcEEEec----CCeEEEEEEecCCEEEEE-
Confidence 45666777765421 135678775 33322 111112234444 357788887 899999999999999876
Q ss_pred ECCccccceeeeeccc
Q 046476 346 IPPVTEQDVVKFLDLK 361 (376)
Q Consensus 346 ~~~~~~~~~~~~~~~~ 361 (376)
+.|..+. +|...+.+
T Consensus 152 ~rGHtDY-vH~vv~R~ 166 (325)
T KOG0649|consen 152 YRGHTDY-VHSVVGRN 166 (325)
T ss_pred EcCCcce-eeeeeecc
Confidence 5555444 55555443
No 92
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=48.01 E-value=51 Score=24.36 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=21.2
Q ss_pred EEEccC-CcEEEEecc--------------cCCCcEEEEEeCCCCcEEEE
Q 046476 310 VSNSNN-GEILLTEYK--------------SSLVSRVFIYDLKTQERRAI 344 (376)
Q Consensus 310 v~~~~~-g~il~~~~~--------------~~~~~~v~~ydl~t~~~~~v 344 (376)
+.+..+ |.|+|.... ....++++.||++|++.+.+
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe
Confidence 345555 778887521 13458899999999998766
No 93
>PRK04792 tolB translocation protein TolB; Provisional
Probab=47.80 E-value=2.8e+02 Score=27.17 Aligned_cols=147 Identities=10% Similarity=0.110 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCceEECce-EEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcccCcceeEec
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGF-IHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQA 256 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~ 256 (376)
...+.+++.+++..+.+...... .......-||. +++... .+....|..+|+++.+...+............ .-
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~~~~--~~~p~wSpDG~~I~f~s~--~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~-Sp 359 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRHRAI--DTEPSWHPDGKSLIFTSE--RGGKPQIYRVNLASGKVSRLTFEGEQNLGGSI-TP 359 (448)
T ss_pred CeEEEEEECCCCCeEECccCCCC--ccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCEEEEecCCCCCcCeeE-CC
Confidence 35677778888877766443110 01111122553 445443 22246799999988887766432211111112 22
Q ss_pred CCe-EEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEe
Q 046476 257 EEK-LGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYD 335 (376)
Q Consensus 257 ~g~-L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~yd 335 (376)
+|+ |++.... .....||.++-.+ ..... +..... . ..| .+..||..++..........++.+|
T Consensus 360 DG~~l~~~~~~----~g~~~I~~~dl~~----g~~~~----lt~~~~--d-~~p-s~spdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 360 DGRSMIMVNRT----NGKFNIARQDLET----GAMQV----LTSTRL--D-ESP-SVAPNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred CCCEEEEEEec----CCceEEEEEECCC----CCeEE----ccCCCC--C-CCc-eECCCCCEEEEEEecCCceEEEEEE
Confidence 554 4444433 4567899887432 22222 111111 1 123 4556776544332223445688889
Q ss_pred CCCCcEEEEE
Q 046476 336 LKTQERRAIK 345 (376)
Q Consensus 336 l~t~~~~~v~ 345 (376)
.+.+..+.+.
T Consensus 424 ~~G~~~~~l~ 433 (448)
T PRK04792 424 IDGRFKARLP 433 (448)
T ss_pred CCCCceEECc
Confidence 8777666654
No 94
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=47.68 E-value=52 Score=25.85 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=26.1
Q ss_pred ccCCcEEEEecc-cCCCcEEEEEeCCCCcEEEEEEC
Q 046476 313 SNNGEILLTEYK-SSLVSRVFIYDLKTQERRAIKIP 347 (376)
Q Consensus 313 ~~~g~il~~~~~-~~~~~~v~~ydl~t~~~~~v~~~ 347 (376)
.-||.+++.... ......++.||+++++++.+...
T Consensus 3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P 38 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP 38 (129)
T ss_pred EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee
Confidence 346777776533 23567899999999999998874
No 95
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.97 E-value=89 Score=33.20 Aligned_cols=61 Identities=11% Similarity=0.274 Sum_probs=42.4
Q ss_pred CCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEE
Q 046476 270 SKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRA 343 (376)
Q Consensus 270 ~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~ 343 (376)
....+.+|.|++. +.|+.--. ..+.. +...+-+++..++++.. +.+..+-+||+++++--.
T Consensus 226 DDRqVKlWrmnet-----KaWEvDtc--rgH~n---nVssvlfhp~q~lIlSn---sEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 226 DDRQVKLWRMNET-----KAWEVDTC--RGHYN---NVSSVLFHPHQDLILSN---SEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred CcceeeEEEeccc-----cceeehhh--hcccC---CcceEEecCccceeEec---CCCccEEEEeccccccee
Confidence 3788999999975 67987444 23322 33455556777888877 378889999998775433
No 96
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=44.83 E-value=13 Score=34.57 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCCChHHHHHHHccCC--------cccccccccccccchhhhcCC
Q 046476 6 RDTVPHDVAMDVLKILP--------EKARMRFKCVSKTWYSSIKGT 43 (376)
Q Consensus 6 ~~~LP~dll~~IL~rLp--------~~sl~r~r~VcK~W~~li~~~ 43 (376)
+..||.++|.+|+.|.. -++++.|..|||.|+....+.
T Consensus 45 ~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 45 WAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred hhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 45899999999999886 336899999999999987665
No 97
>PF13013 F-box-like_2: F-box-like domain
Probab=44.16 E-value=8.8 Score=29.60 Aligned_cols=29 Identities=3% Similarity=0.085 Sum_probs=23.5
Q ss_pred CCCCChHHHHHHHccCCcccccccccccc
Q 046476 6 RDTVPHDVAMDVLKILPEKARMRFKCVSK 34 (376)
Q Consensus 6 ~~~LP~dll~~IL~rLp~~sl~r~r~VcK 34 (376)
..+||+||+..|+..-..+.+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 35799999999999999888866555555
No 98
>PRK05137 tolB translocation protein TolB; Provisional
Probab=40.74 E-value=3.5e+02 Score=26.24 Aligned_cols=196 Identities=10% Similarity=0.070 Sum_probs=0.0
Q ss_pred cCcEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCC
Q 046476 100 VGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTP 179 (376)
Q Consensus 100 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~ 179 (376)
....++++|+.|++.+.+...+. ......+.|..+. ++....... ..
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g-----------------~~~~~~~SPDG~~--la~~~~~~g--------------~~ 270 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPG-----------------MTFAPRFSPDGRK--VVMSLSQGG--------------NT 270 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCC-----------------cccCcEECCCCCE--EEEEEecCC--------------Cc
Q ss_pred eEEEEEcCCCCeeecCCCCCccee-cCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcccCcceeEecCC
Q 046476 180 ECEIFTLGTTSWRKIDAPPSRIHF-RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEE 258 (376)
Q Consensus 180 ~~~vys~~t~~Wr~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~~g 258 (376)
.+.+++..++.-+.+.... .. ......-||.--..+....+ ...|..+|+++++.+.+..............-+.
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~---~~~~~~~~spDG~~i~f~s~~~g-~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSP---AIDTSPSYSPDGSQIVFESDRSG-SPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGD 346 (435)
T ss_pred eEEEEECCCCceEEccCCC---CccCceeEcCCCCEEEEEECCCC-CCeEEEEECCCCCeEEeecCCCcccCeEECCCCC
Q ss_pred eEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCC---cEEEEEe
Q 046476 259 KLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLV---SRVFIYD 335 (376)
Q Consensus 259 ~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~---~~v~~yd 335 (376)
.|+++... .....||+++ -.....+..+ ..... ....+.+||+.++........ ..++.+|
T Consensus 347 ~ia~~~~~----~~~~~i~~~d-----~~~~~~~~lt--~~~~~-----~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 347 LIAFTKQG----GGQFSIGVMK-----PDGSGERILT--SGFLV-----EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred EEEEEEcC----CCceEEEEEE-----CCCCceEecc--CCCCC-----CCCeECCCCCEEEEEEccCCCCCcceEEEEE
Q ss_pred CCCCcEEEEEECC
Q 046476 336 LKTQERRAIKIPP 348 (376)
Q Consensus 336 l~t~~~~~v~~~~ 348 (376)
++++..+.+...+
T Consensus 411 l~g~~~~~l~~~~ 423 (435)
T PRK05137 411 LTGRNEREVPTPG 423 (435)
T ss_pred CCCCceEEccCCC
No 99
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.49 E-value=4.6e+02 Score=27.56 Aligned_cols=118 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCceEECceEEEEEeCCCCC-------CCEEEEEEcCCceeEEEeCCCcc---------cCcceeEec--CCeEEEEEec
Q 046476 205 RQGLCANGFIHWIITNPRKT-------KPVLAVFDVKEEKFDIVKLPDEV---------RKHHDLIQA--EEKLGVLDCD 266 (376)
Q Consensus 205 ~~~v~~~G~lywl~~~~~~~-------~~~il~fDl~~e~~~~i~~P~~~---------~~~~~L~~~--~g~L~~~~~~ 266 (376)
....+.-+..||++.+.... .-.+++-+++++.|....+|... ..-..+..- ++.|++-+..
T Consensus 249 ~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 249 HKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK 328 (893)
T ss_pred cceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc
Q ss_pred CCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcE
Q 046476 267 DFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQER 341 (376)
Q Consensus 267 ~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~ 341 (376)
-..+-||.++ .++.+++.. =....+ ..+++.+||.++..- ..+++|-+||..+...
T Consensus 329 ----lgQLlVweWq------sEsYVlKQQ-gH~~~i-----~~l~YSpDgq~iaTG---~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 329 ----LGQLLVWEWQ------SESYVLKQQ-GHSDRI-----TSLAYSPDGQLIATG---AEDGKVKVWNTQSGFC 384 (893)
T ss_pred ----cceEEEEEee------ccceeeecc-ccccce-----eeEEECCCCcEEEec---cCCCcEEEEeccCceE
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=40.14 E-value=3.6e+02 Score=26.26 Aligned_cols=117 Identities=19% Similarity=0.267 Sum_probs=71.1
Q ss_pred eEECceEEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCC
Q 046476 208 LCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGG 287 (376)
Q Consensus 208 v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~ 287 (376)
++-||.++-.+.. ++.+=.||+.+.. ..-.+|.+...-..+.-.++.-+++.... ..++.+|-|... .
T Consensus 355 fHpDgLifgtgt~----d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~ad---d~~V~lwDLRKl---~- 422 (506)
T KOG0289|consen 355 FHPDGLIFGTGTP----DGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAAD---DGSVKLWDLRKL---K- 422 (506)
T ss_pred EcCCceEEeccCC----CceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEec---CCeEEEEEehhh---c-
Confidence 3446777665541 6678889999877 55567775433334444445445555542 455999988764 1
Q ss_pred CceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEEEE
Q 046476 288 EVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKI 346 (376)
Q Consensus 288 ~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~~ 346 (376)
...+ |..... . ....+.+...|..+... ..+-.|+.|+-+++.|.++.-
T Consensus 423 ----n~kt-~~l~~~-~-~v~s~~fD~SGt~L~~~---g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 423 ----NFKT-IQLDEK-K-EVNSLSFDQSGTYLGIA---GSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred ----ccce-eecccc-c-cceeEEEcCCCCeEEee---cceeEEEEEecccccceeeeh
Confidence 1122 222111 0 12456777778877665 257788999999999998753
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=39.69 E-value=3.9e+02 Score=27.64 Aligned_cols=88 Identities=14% Similarity=0.232 Sum_probs=51.1
Q ss_pred CCEEEEEEcCCceeEEEeCCCcccCccee-EecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEE-eecccc
Q 046476 225 KPVLAVFDVKEEKFDIVKLPDEVRKHHDL-IQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYV-FRFDTI 302 (376)
Q Consensus 225 ~~~il~fDl~~e~~~~i~~P~~~~~~~~L-~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~i-i~~~~~ 302 (376)
++.|.-+|+..|.......-... ...+ ...++.+.+.+.. ..+++||.-++. ...| +|...+
T Consensus 199 Dg~Ir~w~~~ge~l~~~~ghtn~--vYsis~~~~~~~Ivs~gE----DrtlriW~~~e~----------~q~I~lPttsi 262 (745)
T KOG0301|consen 199 DGSIRLWDLDGEVLLEMHGHTNF--VYSISMALSDGLIVSTGE----DRTLRIWKKDEC----------VQVITLPTTSI 262 (745)
T ss_pred CceEEEEeccCceeeeeeccceE--EEEEEecCCCCeEEEecC----CceEEEeecCce----------EEEEecCccce
Confidence 67888888877766655443321 1222 2446777676654 789999975433 2331 333222
Q ss_pred cccCcEeEEEccCCcEEEEecccCCCcEEEEEeCC
Q 046476 303 MFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLK 337 (376)
Q Consensus 303 ~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~ 337 (376)
..+.+..||+|+... .++.|.+|-.+
T Consensus 263 -----Wsa~~L~NgDIvvg~----SDG~VrVfT~~ 288 (745)
T KOG0301|consen 263 -----WSAKVLLNGDIVVGG----SDGRVRVFTVD 288 (745)
T ss_pred -----EEEEEeeCCCEEEec----cCceEEEEEec
Confidence 334445677777776 66666666554
No 102
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=38.47 E-value=4.3e+02 Score=26.58 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=60.3
Q ss_pred CCEEEEEEcCCceeEEEeCCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccc
Q 046476 225 KPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMF 304 (376)
Q Consensus 225 ~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~ 304 (376)
.+.|+.|++..++....---..............++.++... .....++.|..++.. ..++....+
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~--~ad~~v~~~~~~~~~---------~~~~~~~~~--- 144 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV--GADLKVVYILEKEKV---------IIRIWKEQK--- 144 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEec--CCceeEEEEecccce---------eeeeeccCC---
Confidence 677888888877665442222112233334445566555544 335667777766531 111011111
Q ss_pred cCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEEEECCc
Q 046476 305 RPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPV 349 (376)
Q Consensus 305 ~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~~~~~ 349 (376)
..+..+++.+||.++... .+.+-+||.+++++-. .+.|.
T Consensus 145 ~~~~sl~is~D~~~l~~a-----s~~ik~~~~~~kevv~-~ftgh 183 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTA-----SRQIKVLDIETKEVVI-TFTGH 183 (541)
T ss_pred CccceEEEcCCCCEEEec-----cceEEEEEccCceEEE-EecCC
Confidence 123556778888888875 7889999999998743 34444
No 103
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=37.89 E-value=3.5e+02 Score=28.55 Aligned_cols=104 Identities=13% Similarity=0.252 Sum_probs=57.9
Q ss_pred EEEEEcCCceeE---EEeCCCcc-cCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCC--CCCCceeEEEEEeeccc
Q 046476 228 LAVFDVKEEKFD---IVKLPDEV-RKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGR--GGGEVWIRRDYVFRFDT 301 (376)
Q Consensus 228 il~fDl~~e~~~---~i~~P~~~-~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~--g~~~~W~~~~~ii~~~~ 301 (376)
.-.|+.....|. .|..|.+. .....+...--+..++... ....+.||.+.+..+ .....|..... +...
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~---~dg~~KiW~~~~~~n~~k~~s~W~c~~i--~sy~ 508 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS---VDGDFKIWVFTDDSNIYKKSSNWTCKAI--GSYH 508 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec---cCCeEEEEEEecccccCcCccceEEeee--eccc
Confidence 445666666664 34567654 1111111221121233332 378899999955321 02457988654 3211
Q ss_pred ccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCC-CcEE
Q 046476 302 IMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKT-QERR 342 (376)
Q Consensus 302 ~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t-~~~~ 342 (376)
. .+....++.+||.++... -+..+-+||..+ ++++
T Consensus 509 k--~~i~a~~fs~dGslla~s----~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 509 K--TPITALCFSQDGSLLAVS----FDDTITIWDYDTKNELL 544 (792)
T ss_pred c--CcccchhhcCCCcEEEEe----cCCEEEEecCCChhhhh
Confidence 1 112234666789999888 789999999998 4444
No 104
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.46 E-value=2.7e+02 Score=26.61 Aligned_cols=58 Identities=22% Similarity=0.478 Sum_probs=34.8
Q ss_pred CeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEE-----ccC--C-cEEEEecccCCCcEEEEEeCCCCcE
Q 046476 272 NKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSN-----SNN--G-EILLTEYKSSLVSRVFIYDLKTQER 341 (376)
Q Consensus 272 ~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~-----~~~--g-~il~~~~~~~~~~~v~~ydl~t~~~ 341 (376)
..+.||-|+.. +..|+-+.. +++.+.++ .|+.+ .++ . .++-.+ ..+.|-.||++.++-
T Consensus 173 n~lkiwdle~~----~qiw~aKNv--pnD~L~Lr--VPvW~tdi~Fl~g~~~~~fat~T----~~hqvR~YDt~~qRR 238 (412)
T KOG3881|consen 173 NELKIWDLEQS----KQIWSAKNV--PNDRLGLR--VPVWITDIRFLEGSPNYKFATIT----RYHQVRLYDTRHQRR 238 (412)
T ss_pred cceeeeecccc----eeeeeccCC--CCccccce--eeeeeccceecCCCCCceEEEEe----cceeEEEecCcccCc
Confidence 68999999864 577877644 66655433 44422 222 1 222222 677888888886654
No 105
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=35.61 E-value=3.5e+02 Score=24.81 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=62.6
Q ss_pred CceEEEEEeCCCCCCCEEEEEEcC--CceeEEE---e-CCCcc-c--CcceeE-ecCCe-EEEEEecCCCCCCeEEEEEE
Q 046476 211 NGFIHWIITNPRKTKPVLAVFDVK--EEKFDIV---K-LPDEV-R--KHHDLI-QAEEK-LGVLDCDDFRSKNKIRVWIL 279 (376)
Q Consensus 211 ~G~lywl~~~~~~~~~~il~fDl~--~e~~~~i---~-~P~~~-~--~~~~L~-~~~g~-L~~~~~~~~~~~~~~~IW~l 279 (376)
+|...+.+. . ..+.|.+||+. ++++..+ . .|... . ....+. .-+|+ |++... ..+.+.+|.+
T Consensus 185 dg~~lyv~~--~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i 257 (330)
T PRK11028 185 NQQYAYCVN--E-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR----TASLISVFSV 257 (330)
T ss_pred CCCEEEEEe--c-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC----CCCeEEEEEE
Confidence 555555544 1 26789999987 3455433 2 34322 1 111222 22555 554432 3678999988
Q ss_pred ccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeC--CCCcEEEEE
Q 046476 280 KDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDL--KTQERRAIK 345 (376)
Q Consensus 280 ~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl--~t~~~~~v~ 345 (376)
+.. ...+..... ++.... . ..+.+..+|+.+++... .++.+.+|+. +++.++.+.
T Consensus 258 ~~~----~~~~~~~~~-~~~~~~--p--~~~~~~~dg~~l~va~~--~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 258 SED----GSVLSFEGH-QPTETQ--P--RGFNIDHSGKYLIAAGQ--KSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred eCC----CCeEEEeEE-Eecccc--C--CceEECCCCCEEEEEEc--cCCcEEEEEEcCCCCcEEEcc
Confidence 754 234555555 332211 1 34577788887776532 3556666654 566676654
No 106
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=35.01 E-value=2.7e+02 Score=27.99 Aligned_cols=112 Identities=14% Similarity=0.241 Sum_probs=65.2
Q ss_pred ccccceEEEEEecCcEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046476 88 QLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSS 167 (376)
Q Consensus 88 ~s~nGLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 167 (376)
=..+|-++.+..++.++.||||..++...+=..... ...+..-|-|-+++-.|+....
T Consensus 58 Wn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---------------aNIFsvKFvP~tnnriv~sgAg------- 115 (758)
T KOG1310|consen 58 WNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---------------ANIFSVKFVPYTNNRIVLSGAG------- 115 (758)
T ss_pred ecCCCCEEeecCCcceEEeecchhcceeeeeecccc---------------cceeEEeeeccCCCeEEEeccC-------
Confidence 346788888877888999999995554433222211 2566667778887766655432
Q ss_pred cccceecCCCCCeEEEEEcCCCCeeecCC---CCCc---cee---cCCceEECc-eEEEEEeCCCCCCCEEEEEEcCC
Q 046476 168 SYAWMIDNHGTPECEIFTLGTTSWRKIDA---PPSR---IHF---RRQGLCANG-FIHWIITNPRKTKPVLAVFDVKE 235 (376)
Q Consensus 168 ~~~~~~~~~~~~~~~vys~~t~~Wr~~~~---~~~~---~~~---~~~~v~~~G-~lywl~~~~~~~~~~il~fDl~~ 235 (376)
...+.+|++..-+=+.-.. .+.. .+. ..-++.-+| ..+|-+.. ++.|.-+|+..
T Consensus 116 ----------Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE----DGtirQyDiRE 179 (758)
T KOG1310|consen 116 ----------DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE----DGTIRQYDIRE 179 (758)
T ss_pred ----------cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC----CcceeeecccC
Confidence 4667777776421111110 0000 111 222333455 78888872 77888899874
No 107
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=33.14 E-value=5.1e+02 Score=25.96 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCCeeecCCC--CCcceecCCceEECceEEEEEeC----CC-------CC----CCEEEEEEcCCceeEE
Q 046476 178 TPECEIFTLGTTSWRKIDAP--PSRIHFRRQGLCANGFIHWIITN----PR-------KT----KPVLAVFDVKEEKFDI 240 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~--~~~~~~~~~~v~~~G~lywl~~~----~~-------~~----~~~il~fDl~~e~~~~ 240 (376)
-....-.+++|-.|.+.... .|.....+.++.++.++|.++.= +. +. ...+-++++.+.+|..
T Consensus 229 LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~t 308 (830)
T KOG4152|consen 229 LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWET 308 (830)
T ss_pred ccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheee
Confidence 34566778888899876432 22222256677788888876530 11 10 4579999999999987
Q ss_pred EeC--------CCcccCcceeEecCCeEEEEEecCC------CCCCeEEEEEEcc
Q 046476 241 VKL--------PDEVRKHHDLIQAEEKLGVLDCDDF------RSKNKIRVWILKD 281 (376)
Q Consensus 241 i~~--------P~~~~~~~~L~~~~g~L~~~~~~~~------~~~~~~~IW~l~~ 281 (376)
+-+ |.. .....-+..+.+|++....+. ....+-++|.|+.
T Consensus 309 l~~d~~ed~tiPR~-RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 309 LLMDTLEDNTIPRA-RAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eeeccccccccccc-cccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 743 221 234455677888888876521 2344567888864
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=32.53 E-value=3.1e+02 Score=25.43 Aligned_cols=72 Identities=13% Similarity=0.264 Sum_probs=44.9
Q ss_pred CCeEEEEEEccCCCCCCCceeEEEEEeecccc-ccc-CcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEEEECC
Q 046476 271 KNKIRVWILKDYGRGGGEVWIRRDYVFRFDTI-MFR-PPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPP 348 (376)
Q Consensus 271 ~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~-~~~-~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~~~~ 348 (376)
..+++||.+++.| . . +| ... ... +..-++-..+|.-++.. ..+..+-.||+.+++...|..+.
T Consensus 49 D~tVR~wevq~~g--~--------~-~~-ka~~~~~~PvL~v~WsddgskVf~g---~~Dk~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 49 DGTVRIWEVQNSG--Q--------L-VP-KAQQSHDGPVLDVCWSDDGSKVFSG---GCDKQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred CCceEEEEEecCC--c--------c-cc-hhhhccCCCeEEEEEccCCceEEee---ccCCceEEEEccCCCeeeeeecc
Confidence 6789999998764 1 1 12 111 011 22334444567666554 26889999999999999998766
Q ss_pred ccccceeee
Q 046476 349 VTEQDVVKF 357 (376)
Q Consensus 349 ~~~~~~~~~ 357 (376)
.+-...|.+
T Consensus 114 ~pvkt~~wv 122 (347)
T KOG0647|consen 114 APVKTCHWV 122 (347)
T ss_pred cceeEEEEe
Confidence 654444443
No 109
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=31.85 E-value=4.5e+02 Score=24.94 Aligned_cols=117 Identities=9% Similarity=0.104 Sum_probs=67.7
Q ss_pred EECceEEEEEeCCCCCCCEEEEEEcCCc------eeEEEeCC--C-cc-cCcce-eEec--CCeEEEEEecCC---CCCC
Q 046476 209 CANGFIHWIITNPRKTKPVLAVFDVKEE------KFDIVKLP--D-EV-RKHHD-LIQA--EEKLGVLDCDDF---RSKN 272 (376)
Q Consensus 209 ~~~G~lywl~~~~~~~~~~il~fDl~~e------~~~~i~~P--~-~~-~~~~~-L~~~--~g~L~~~~~~~~---~~~~ 272 (376)
-.+|..+|.+. ++.|...|+... .|..+..- . .. ....+ +... +++|+++..... -...
T Consensus 203 ~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 203 NKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred cCCCcEEEEec-----CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 33799999988 789999996543 34433221 1 11 11111 2222 456766443210 0122
Q ss_pred eEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCc-EEEEecccCCCcEEEEEeCCCCcEEE
Q 046476 273 KIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGE-ILLTEYKSSLVSRVFIYDLKTQERRA 343 (376)
Q Consensus 273 ~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~-il~~~~~~~~~~~v~~ydl~t~~~~~ 343 (376)
.=+||+++- ..+..+.+ |+... ....+++..+++ .++.... ..+.|.++|..+.+..+
T Consensus 278 ~~~V~ViD~------~t~kvi~~-i~vG~----~~~~iavS~Dgkp~lyvtn~--~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 278 SRFLFVVDA------KTGKRLRK-IELGH----EIDSINVSQDAKPLLYALST--GDKTLYIFDAETGKELS 336 (352)
T ss_pred CCEEEEEEC------CCCeEEEE-EeCCC----ceeeEEECCCCCeEEEEeCC--CCCcEEEEECcCCeEEe
Confidence 247888873 45777777 45322 125678889999 7776632 35679999999885543
No 110
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=31.28 E-value=1.1e+02 Score=17.60 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=23.4
Q ss_pred eeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEe
Q 046476 290 WIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYD 335 (376)
Q Consensus 290 W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~yd 335 (376)
|..+.+ +..+.- ...-+++.+++..++.. +.++.+.+||
T Consensus 1 g~~~~~-~~~h~~---~i~~i~~~~~~~~~~s~---~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRT-FRGHSS---SINSIAWSPDGNFLASG---SSDGTIRVWD 39 (39)
T ss_dssp EEEEEE-EESSSS---SEEEEEEETTSSEEEEE---ETTSEEEEEE
T ss_pred CeEEEE-EcCCCC---cEEEEEEecccccceee---CCCCEEEEEC
Confidence 455555 454332 23556667777776665 2678888876
No 111
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=31.20 E-value=5.1e+02 Score=26.30 Aligned_cols=119 Identities=10% Similarity=0.041 Sum_probs=60.7
Q ss_pred ceEEEEEeCCCCCCCEEEEEEcCCceeE-EEeCCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCce
Q 046476 212 GFIHWIITNPRKTKPVLAVFDVKEEKFD-IVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVW 290 (376)
Q Consensus 212 G~lywl~~~~~~~~~~il~fDl~~e~~~-~i~~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W 290 (376)
--+|..+. ..-+..|+++-++|- .+..-...-....+-+++|-|++-.. ...++.|-..+- ..=
T Consensus 146 cDly~~gs-----g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~-----~g~VEfwDpR~k-----srv 210 (703)
T KOG2321|consen 146 CDLYLVGS-----GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE-----DGVVEFWDPRDK-----SRV 210 (703)
T ss_pred ccEEEeec-----CcceEEEEccccccccccccccccceeeeecCccceEEeccc-----CceEEEecchhh-----hhh
Confidence 34555555 677999999988883 22221110123334445555544332 677888855431 111
Q ss_pred eEEEEE--eecccc--cccCcEeEEEccCCcEE-EEecccCCCcEEEEEeCCCCcEEEEEECCc
Q 046476 291 IRRDYV--FRFDTI--MFRPPIPVSNSNNGEIL-LTEYKSSLVSRVFIYDLKTQERRAIKIPPV 349 (376)
Q Consensus 291 ~~~~~i--i~~~~~--~~~~~~~v~~~~~g~il-~~~~~~~~~~~v~~ydl~t~~~~~v~~~~~ 349 (376)
..+... ++..+. .......+.+..+|-=+ +.+ ..+.+++||+++.+--.++-++.
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt----s~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT----STGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeec----cCCcEEEEEcccCCceeecccCC
Confidence 111110 111221 01122345655555433 333 68899999999987766654433
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=30.65 E-value=2.4e+02 Score=27.56 Aligned_cols=63 Identities=16% Similarity=0.315 Sum_probs=37.0
Q ss_pred CCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCc-EEEEecccCCCcEEEEEeCCCCcEEEEEE
Q 046476 271 KNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGE-ILLTEYKSSLVSRVFIYDLKTQERRAIKI 346 (376)
Q Consensus 271 ~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~-il~~~~~~~~~~~v~~ydl~t~~~~~v~~ 346 (376)
...++|..++.- ... ++.+ |....+ +....++..+|. .++.. +....++.||+++.++.++.-
T Consensus 234 d~~lrifqvDGk----~N~--~lqS-~~l~~f---Pi~~a~f~p~G~~~i~~s---~rrky~ysyDle~ak~~k~~~ 297 (514)
T KOG2055|consen 234 DGTLRIFQVDGK----VNP--KLQS-IHLEKF---PIQKAEFAPNGHSVIFTS---GRRKYLYSYDLETAKVTKLKP 297 (514)
T ss_pred CCcEEEEEecCc----cCh--hhee-eeeccC---ccceeeecCCCceEEEec---ccceEEEEeeccccccccccC
Confidence 566667766632 222 4444 232222 112335566776 55544 256789999999999998864
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=30.32 E-value=3.8e+02 Score=23.54 Aligned_cols=118 Identities=18% Similarity=0.277 Sum_probs=62.9
Q ss_pred CceEEEEEeCCCCCCCEEEEEEcCCcee-EEEeC--CC---cccCcceeE-ecCCeEEEEEecCCCCCCeEEEEEEccCC
Q 046476 211 NGFIHWIITNPRKTKPVLAVFDVKEEKF-DIVKL--PD---EVRKHHDLI-QAEEKLGVLDCDDFRSKNKIRVWILKDYG 283 (376)
Q Consensus 211 ~G~lywl~~~~~~~~~~il~fDl~~e~~-~~i~~--P~---~~~~~~~L~-~~~g~L~~~~~~~~~~~~~~~IW~l~~~~ 283 (376)
+|...+.+. ...+.|..||+++.+. ..+.. |. .......+. .-+|+..++... ....+.||-++.
T Consensus 167 dg~~l~~~~---~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~---~~~~i~v~d~~~-- 238 (300)
T TIGR03866 167 DGKELWVSS---EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG---PANRVAVVDAKT-- 238 (300)
T ss_pred CCCEEEEEc---CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC---CCCeEEEEECCC--
Confidence 555444443 1156799999988654 33332 11 101111232 235655444332 145678885432
Q ss_pred CCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcE-EEEEECCc
Q 046476 284 RGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQER-RAIKIPPV 349 (376)
Q Consensus 284 ~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~-~~v~~~~~ 349 (376)
|..... +.... ....+++.++|..++... ..++.|.+||+++.+. +.+++.+.
T Consensus 239 ------~~~~~~-~~~~~----~~~~~~~~~~g~~l~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~ 292 (300)
T TIGR03866 239 ------YEVLDY-LLVGQ----RVWQLAFTPDEKYLLTTN--GVSNDVSVIDVAALKVIKSIKVGRL 292 (300)
T ss_pred ------CcEEEE-EEeCC----CcceEEECCCCCEEEEEc--CCCCeEEEEECCCCcEEEEEEcccc
Confidence 344333 22111 124567778888776541 2478999999999885 66666433
No 114
>PRK04792 tolB translocation protein TolB; Provisional
Probab=29.34 E-value=5.5e+02 Score=25.11 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=69.4
Q ss_pred CeEEEEEcCCCCeeecCCCCCcceecCCceEECce-EEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcccCcceeEecC
Q 046476 179 PECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGF-IHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAE 257 (376)
Q Consensus 179 ~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~~ 257 (376)
..+.+++..++.-+.+..... ........-||. +++... .+....|..+|+++.+...+.-.......... .-+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~--~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~w-SpD 316 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPG--INGAPRFSPDGKKLALVLS--KDGQPEIYVVDIATKALTRITRHRAIDTEPSW-HPD 316 (448)
T ss_pred cEEEEEECCCCCeEEecCCCC--CcCCeeECCCCCEEEEEEe--CCCCeEEEEEECCCCCeEECccCCCCccceEE-CCC
Confidence 445566666655444332210 001111222554 444433 12144688999998876654321111111111 225
Q ss_pred Ce-EEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeC
Q 046476 258 EK-LGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDL 336 (376)
Q Consensus 258 g~-L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl 336 (376)
|+ |++.... .....||.++-. ...+.++ + ..... . ....+..+|+.++..........++.+|+
T Consensus 317 G~~I~f~s~~----~g~~~Iy~~dl~----~g~~~~L-t-~~g~~----~-~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 317 GKSLIFTSER----GGKPQIYRVNLA----SGKVSRL-T-FEGEQ----N-LGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred CCEEEEEECC----CCCceEEEEECC----CCCEEEE-e-cCCCC----C-cCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 54 5444322 334688988753 2345443 2 12111 1 12244567664433321123457899999
Q ss_pred CCCcEEEEE
Q 046476 337 KTQERRAIK 345 (376)
Q Consensus 337 ~t~~~~~v~ 345 (376)
++++.+.+.
T Consensus 382 ~~g~~~~lt 390 (448)
T PRK04792 382 ETGAMQVLT 390 (448)
T ss_pred CCCCeEEcc
Confidence 999887653
No 115
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=29.26 E-value=24 Score=31.76 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=30.1
Q ss_pred CCCChHHHHHHHccCC-cccccccccccccchhhhcCC
Q 046476 7 DTVPHDVAMDVLKILP-EKARMRFKCVSKTWYSSIKGT 43 (376)
Q Consensus 7 ~~LP~dll~~IL~rLp-~~sl~r~r~VcK~W~~li~~~ 43 (376)
.+||.+++.+||.||| =.+|....-|-..-..++.+.
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~ 240 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER 240 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH
Confidence 5899999999999999 778888877766666666654
No 116
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=29.18 E-value=4.3e+02 Score=23.85 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcc-----cC-cc
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEV-----RK-HH 251 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~-----~~-~~ 251 (376)
.-.+.|++++++.=..-..+.+......-.|.-+|..---+. ..+..+++++-+.++..--.|-.. .. -.
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR 220 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccceEEE
Confidence 345566666665322211111111113334444565433222 256677777766544322222221 11 12
Q ss_pred eeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEE
Q 046476 252 DLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRV 331 (376)
Q Consensus 252 ~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v 331 (376)
.+..-+++.-..+.. +.+..||..++. -..... +..... +- .-.++..+|+.++.. +.+..+
T Consensus 221 C~lSPd~k~lat~ss----dktv~iwn~~~~-------~kle~~-l~gh~r-Wv--Wdc~FS~dg~YlvTa---ssd~~~ 282 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSS----DKTVKIWNTDDF-------FKLELV-LTGHQR-WV--WDCAFSADGEYLVTA---SSDHTA 282 (311)
T ss_pred EEECCCCcEEEeecC----CceEEEEecCCc-------eeeEEE-eecCCc-eE--EeeeeccCccEEEec---CCCCce
Confidence 223336665444444 889999988753 122222 333221 11 223556678877765 367888
Q ss_pred EEEeCCCCcEEEE
Q 046476 332 FIYDLKTQERRAI 344 (376)
Q Consensus 332 ~~ydl~t~~~~~v 344 (376)
-.||++.++-.+.
T Consensus 283 rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQ 295 (311)
T ss_pred eecccccCceeee
Confidence 8999998775443
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=28.39 E-value=5e+02 Score=24.33 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=58.0
Q ss_pred CCEEEEEEcCC-----ceeEEEeCCCcccCcceeEec-CCe--EEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEE
Q 046476 225 KPVLAVFDVKE-----EKFDIVKLPDEVRKHHDLIQA-EEK--LGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYV 296 (376)
Q Consensus 225 ~~~il~fDl~~-----e~~~~i~~P~~~~~~~~L~~~-~g~--L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~i 296 (376)
+..|..||+.. .++..+.+|.. ...++.. .++ +.+.+. ..+++.++.|..-.+| +-..-..-
T Consensus 107 Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv~~~----~g~~l~vyk~~K~~dG---~~~~~~v~ 176 (420)
T KOG2096|consen 107 DRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVVSVK----RGNKLCVYKLVKKTDG---SGSHHFVH 176 (420)
T ss_pred CceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEEEEEc----cCCEEEEEEeeecccC---CCCccccc
Confidence 67888888864 23334445543 3334433 332 222332 3778888887543211 11111000
Q ss_pred eeccccc-cc--CcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEEE
Q 046476 297 FRFDTIM-FR--PPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIK 345 (376)
Q Consensus 297 i~~~~~~-~~--~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~ 345 (376)
+++..+. .. +...+|+.+++.+++.. +.+..++.||++.+.+..|.
T Consensus 177 ~D~~~f~~kh~v~~i~iGiA~~~k~imsa---s~dt~i~lw~lkGq~L~~id 225 (420)
T KOG2096|consen 177 IDNLEFERKHQVDIINIGIAGNAKYIMSA---SLDTKICLWDLKGQLLQSID 225 (420)
T ss_pred ccccccchhcccceEEEeecCCceEEEEe---cCCCcEEEEecCCceeeeec
Confidence 1111110 00 22346877788888776 37889999999988888774
No 118
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=27.25 E-value=5e+02 Score=23.98 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=91.2
Q ss_pred ceEEEEEecCcEEEEEecCCcce-ecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCccc
Q 046476 92 GFICFYNIVGFEILMRNVVTQEI-IDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYA 170 (376)
Q Consensus 92 GLl~~~~~~~~~~~V~NP~T~~~-~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 170 (376)
+-.++....+..+.||+-.|..- ..+|-+.. ..+.-.|.|+++ | |-|
T Consensus 67 sr~ivSaSqDGklIvWDs~TtnK~haipl~s~-----------------WVMtCA~sPSg~-~-VAc------------- 114 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-----------------WVMTCAYSPSGN-F-VAC------------- 114 (343)
T ss_pred cCeEEeeccCCeEEEEEcccccceeEEecCce-----------------eEEEEEECCCCC-e-EEe-------------
Confidence 33444444677889999987644 44554432 222223455432 2 112
Q ss_pred ceecCCCCCeEEEEEcCCCCe----eecCCCCCcceecCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeE-EEeCCC
Q 046476 171 WMIDNHGTPECEIFTLGTTSW----RKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFD-IVKLPD 245 (376)
Q Consensus 171 ~~~~~~~~~~~~vys~~t~~W----r~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~-~i~~P~ 245 (376)
......|.||++.+..= +.....+.........-++| --|-++. .+ +-...-+|+++.+-. .+.-..
T Consensus 115 ----GGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~--SG-D~TCalWDie~g~~~~~f~GH~ 186 (343)
T KOG0286|consen 115 ----GGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTG--SG-DMTCALWDIETGQQTQVFHGHT 186 (343)
T ss_pred ----cCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEec--CC-CceEEEEEcccceEEEEecCCc
Confidence 12357889999886321 11111111111122233444 2233333 22 445666777765432 222111
Q ss_pred cccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEeccc
Q 046476 246 EVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKS 325 (376)
Q Consensus 246 ~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~ 325 (376)
.--....|...++..++.... ...-.||-+.+. .-+.+ |+.+.. +.-.|.++++|.-+...
T Consensus 187 gDV~slsl~p~~~ntFvSg~c----D~~aklWD~R~~--------~c~qt-F~ghes---DINsv~ffP~G~afatG--- 247 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGC----DKSAKLWDVRSG--------QCVQT-FEGHES---DINSVRFFPSGDAFATG--- 247 (343)
T ss_pred ccEEEEecCCCCCCeEEeccc----ccceeeeeccCc--------ceeEe-eccccc---ccceEEEccCCCeeeec---
Confidence 000111222235666666655 677788977653 12233 444333 23456667777666554
Q ss_pred CCCcEEEEEeCCCCc
Q 046476 326 SLVSRVFIYDLKTQE 340 (376)
Q Consensus 326 ~~~~~v~~ydl~t~~ 340 (376)
+.+.-.-.||++...
T Consensus 248 SDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 248 SDDATCRLYDLRADQ 262 (343)
T ss_pred CCCceeEEEeecCCc
Confidence 255667777777654
No 119
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=27.10 E-value=5.4e+02 Score=24.28 Aligned_cols=154 Identities=15% Similarity=0.150 Sum_probs=79.3
Q ss_pred CCeEEEEEcCCCCeeecCCCCCccee-cCCceEE-Cce-EEEEEeCCCCCCCEEEEEEcC--CceeEEEe----CCCcc-
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHF-RRQGLCA-NGF-IHWIITNPRKTKPVLAVFDVK--EEKFDIVK----LPDEV- 247 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~-~~~~v~~-~G~-lywl~~~~~~~~~~il~fDl~--~e~~~~i~----~P~~~- 247 (376)
..++.+|++..+.-.......-.... .+.-++. ||. +|.+++ ....|.++..+ ..+++.++ +|...
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E----L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE----LNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec----cCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 67889999987765443222100011 1222333 564 455554 24445555544 47888774 57765
Q ss_pred --cCcceeEec-CCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecc
Q 046476 248 --RKHHDLIQA-EEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYK 324 (376)
Q Consensus 248 --~~~~~L~~~-~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~ 324 (376)
.....+-.. +|+.-.++.. ..+.|.+..+++.+ .+ =..+.. .+.... .. +-+-+..+|++|+....
T Consensus 242 g~~~~aaIhis~dGrFLYasNR---g~dsI~~f~V~~~~--g~--L~~~~~-~~teg~-~P--R~F~i~~~g~~Liaa~q 310 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNR---GHDSIAVFSVDPDG--GK--LELVGI-TPTEGQ-FP--RDFNINPSGRFLIAANQ 310 (346)
T ss_pred CCCceeEEEECCCCCEEEEecC---CCCeEEEEEEcCCC--CE--EEEEEE-eccCCc-CC--ccceeCCCCCEEEEEcc
Confidence 222333333 6664444433 36677777777763 22 111111 111111 11 34455677887777633
Q ss_pred cCCCcEEEEEeCCCCcEEEEEE
Q 046476 325 SSLVSRVFIYDLKTQERRAIKI 346 (376)
Q Consensus 325 ~~~~~~v~~ydl~t~~~~~v~~ 346 (376)
-+..-.+|.-|.+|+++..+..
T Consensus 311 ~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 311 KSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCCcEEEEEEcCCCceEEeccc
Confidence 2334466777888888877643
No 120
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=26.81 E-value=6.1e+02 Score=24.84 Aligned_cols=97 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCEEEEEEcCCceeEEEeCCCcc-cCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeeccccc
Q 046476 225 KPVLAVFDVKEEKFDIVKLPDEV-RKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIM 303 (376)
Q Consensus 225 ~~~il~fDl~~e~~~~i~~P~~~-~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~ 303 (376)
+..|-.||+....-...-+.... .....-..-.|.+.+.... ..+++||-++.. .=.+... .....+
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~----D~tvriWd~~~~------~~~~~l~-~hs~~i- 291 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD----DGTVRIWDVRTG------ECVRKLK-GHSDGI- 291 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC----CCcEEEEeccCC------eEEEeee-ccCCce-
Q ss_pred ccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCc
Q 046476 304 FRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQE 340 (376)
Q Consensus 304 ~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~ 340 (376)
..+++..+|.++... +.++.+.+||+.++.
T Consensus 292 ----s~~~f~~d~~~l~s~---s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 292 ----SGLAFSPDGNLLVSA---SYDGTIRVWDLETGS 321 (456)
T ss_pred ----EEEEECCCCCEEEEc---CCCccEEEEECCCCc
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.14 E-value=5.4e+02 Score=24.01 Aligned_cols=96 Identities=14% Similarity=0.268 Sum_probs=47.1
Q ss_pred cCCceEECceEEEEEeCCCCCCCEEEEEEcCCce-eEEEeCCCcccCcceeEecCCeE---EEEEecCCCCCCeEEEEEE
Q 046476 204 RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEK-FDIVKLPDEVRKHHDLIQAEEKL---GVLDCDDFRSKNKIRVWIL 279 (376)
Q Consensus 204 ~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~-~~~i~~P~~~~~~~~L~~~~g~L---~~~~~~~~~~~~~~~IW~l 279 (376)
.-.+|-++|. |++. .+++..|-.||+.+.+ ...+--|... ..-....+.+ .++... ....+.||..
T Consensus 45 sitavAVs~~--~~aS--GssDetI~IYDm~k~~qlg~ll~Hags---itaL~F~~~~S~shLlS~s---dDG~i~iw~~ 114 (362)
T KOG0294|consen 45 SITALAVSGP--YVAS--GSSDETIHIYDMRKRKQLGILLSHAGS---ITALKFYPPLSKSHLLSGS---DDGHIIIWRV 114 (362)
T ss_pred ceeEEEecce--eEec--cCCCCcEEEEeccchhhhcceeccccc---eEEEEecCCcchhheeeec---CCCcEEEEEc
Confidence 4556677776 3333 2347889999998642 2222223221 0011111111 233332 2678889953
Q ss_pred ccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEE
Q 046476 280 KDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLT 321 (376)
Q Consensus 280 ~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~ 321 (376)
++|..+.+ +..+.- ...-+++++.|++-+.
T Consensus 115 --------~~W~~~~s-lK~H~~---~Vt~lsiHPS~KLALs 144 (362)
T KOG0294|consen 115 --------GSWELLKS-LKAHKG---QVTDLSIHPSGKLALS 144 (362)
T ss_pred --------CCeEEeee-eccccc---ccceeEecCCCceEEE
Confidence 46988888 555332 1123344444444443
No 122
>PRK00178 tolB translocation protein TolB; Provisional
Probab=26.01 E-value=6e+02 Score=24.43 Aligned_cols=147 Identities=13% Similarity=0.175 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCc-eEECc-eEEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcccCcceeEe
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQG-LCANG-FIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQ 255 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~-v~~~G-~lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~ 255 (376)
...+.+++..++..+.+..... ..... ..-|| .+++... ......|..+|+.+.+.+.+...........+..
T Consensus 266 ~~~Iy~~d~~~~~~~~lt~~~~---~~~~~~~spDg~~i~f~s~--~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (430)
T PRK00178 266 NPEIYVMDLASRQLSRVTNHPA---IDTEPFWGKDGRTLYFTSD--RGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA 340 (430)
T ss_pred CceEEEEECCCCCeEEcccCCC---CcCCeEECCCCCEEEEEEC--CCCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence 3567788888888776543211 11111 12255 4555544 2224568889998887766643221111111222
Q ss_pred cCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEe
Q 046476 256 AEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYD 335 (376)
Q Consensus 256 ~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~yd 335 (376)
-+..|++.... .....||+++-.+ ..... +..... ...| .+..||..++....-.+...++..+
T Consensus 341 dg~~i~~~~~~----~~~~~l~~~dl~t----g~~~~----lt~~~~---~~~p-~~spdg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 341 DGKTLVMVHRQ----DGNFHVAAQDLQR----GSVRI----LTDTSL---DESP-SVAPNGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred CCCEEEEEEcc----CCceEEEEEECCC----CCEEE----ccCCCC---CCCc-eECCCCCEEEEEEecCCceEEEEEE
Confidence 23345554433 2356688776431 22222 221111 1123 4556776554432222345788999
Q ss_pred CCCCcEEEEE
Q 046476 336 LKTQERRAIK 345 (376)
Q Consensus 336 l~t~~~~~v~ 345 (376)
++.+..+.+.
T Consensus 405 ~~g~~~~~l~ 414 (430)
T PRK00178 405 INGRVRLPLP 414 (430)
T ss_pred CCCCceEECc
Confidence 9877665554
No 123
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=24.34 E-value=6.1e+02 Score=25.16 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=49.7
Q ss_pred eEEEEEcCCC--CeeecCCCCCc-----cee-cCCceEECceEEEEEeCCCCCCCEEEEEEcCCc--eeEEEeCCCcccC
Q 046476 180 ECEIFTLGTT--SWRKIDAPPSR-----IHF-RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEE--KFDIVKLPDEVRK 249 (376)
Q Consensus 180 ~~~vys~~t~--~Wr~~~~~~~~-----~~~-~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e--~~~~i~~P~~~~~ 249 (376)
.+..++..++ .|+.-...... ... ....+..+|.+|.-.. ++.|.+||..+. .|+ .++|.....
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~-----dG~l~ald~~tG~~lW~-~~~~~~~~a 440 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA-----DGYFRAFDATTGKELWK-FRTPSGIQA 440 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECC-----CCeEEEEECCCCceeeE-EECCCCceE
Confidence 4555666664 58775431100 001 2234566778887665 788999999875 444 466655433
Q ss_pred cceeEecCCeEEEEEec
Q 046476 250 HHDLIQAEEKLGVLDCD 266 (376)
Q Consensus 250 ~~~L~~~~g~L~~~~~~ 266 (376)
...+...+|+++++..+
T Consensus 441 ~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 441 TPMTYEVNGKQYVGVMV 457 (488)
T ss_pred cCEEEEeCCEEEEEEEe
Confidence 44455679999999876
No 124
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=24.19 E-value=5.4e+02 Score=23.32 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=60.9
Q ss_pred ECceEEEEEeCCCCCCCEEEEEEcCCceeE-EEeCCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCC
Q 046476 210 ANGFIHWIITNPRKTKPVLAVFDVKEEKFD-IVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGE 288 (376)
Q Consensus 210 ~~G~lywl~~~~~~~~~~il~fDl~~e~~~-~i~~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~ 288 (376)
-+|.+|=-+. ...+..|..+|+++++.. ..++|... ..-.++..+++|+.+.-. ....=++-.+
T Consensus 54 ~~g~LyESTG--~yG~S~l~~~d~~tg~~~~~~~l~~~~-FgEGit~~~d~l~qLTWk----~~~~f~yd~~-------- 118 (264)
T PF05096_consen 54 DDGTLYESTG--LYGQSSLRKVDLETGKVLQSVPLPPRY-FGEGITILGDKLYQLTWK----EGTGFVYDPN-------- 118 (264)
T ss_dssp ETTEEEEEEC--STTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESS----SSEEEEEETT--------
T ss_pred CCCEEEEeCC--CCCcEEEEEEECCCCcEEEEEECCccc-cceeEEEECCEEEEEEec----CCeEEEEccc--------
Confidence 3577776655 222567999999998774 67898864 223467778888888765 4444344322
Q ss_pred ceeEEEEEeecccccccCcEeEEEccCCc-EEEEecccCCCcEEEEEeCCCCcE
Q 046476 289 VWIRRDYVFRFDTIMFRPPIPVSNSNNGE-ILLTEYKSSLVSRVFIYDLKTQER 341 (376)
Q Consensus 289 ~W~~~~~ii~~~~~~~~~~~~v~~~~~g~-il~~~~~~~~~~~v~~ydl~t~~~ 341 (376)
...++.+ ++... --.|++.+|+ +++.. +...+...|+++-+.
T Consensus 119 tl~~~~~-~~y~~------EGWGLt~dg~~Li~SD----GS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 119 TLKKIGT-FPYPG------EGWGLTSDGKRLIMSD----GSSRLYFLDPETFKE 161 (264)
T ss_dssp TTEEEEE-EE-SS------S--EEEECSSCEEEE-----SSSEEEEE-TTT-SE
T ss_pred cceEEEE-EecCC------cceEEEcCCCEEEEEC----CccceEEECCcccce
Confidence 3445555 44321 2344445555 55555 788999999987644
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=22.85 E-value=5.2e+02 Score=22.62 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=55.3
Q ss_pred CceEEEEEeCCCCCCCEEEEEEcCCceeEE-EeCCCcccCcceeE-ecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCC
Q 046476 211 NGFIHWIITNPRKTKPVLAVFDVKEEKFDI-VKLPDEVRKHHDLI-QAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGE 288 (376)
Q Consensus 211 ~G~lywl~~~~~~~~~~il~fDl~~e~~~~-i~~P~~~~~~~~L~-~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~ 288 (376)
+|.+.+.+. .. ...+..+|.++.+... +..+.. ...+. .-+|+..++... ....+.+|-++..
T Consensus 125 dg~~l~~~~--~~-~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~------ 189 (300)
T TIGR03866 125 DGKIVVNTS--ET-TNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSE---IGGTVSVIDVATR------ 189 (300)
T ss_pred CCCEEEEEe--cC-CCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcC---CCCEEEEEEcCcc------
Confidence 566655554 11 3356667887655432 222211 11122 225554333332 2567889976632
Q ss_pred ceeEEEEEeecccccccCcE--eEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEE
Q 046476 289 VWIRRDYVFRFDTIMFRPPI--PVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAI 344 (376)
Q Consensus 289 ~W~~~~~ii~~~~~~~~~~~--~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v 344 (376)
...+... +......-.... .+++..+++.++... ..+..+.+||+++.+....
T Consensus 190 ~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~--~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 190 KVIKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVAL--GPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred eeeeeee-ecccccccccCCccceEECCCCCEEEEEc--CCCCeEEEEECCCCcEEEE
Confidence 1112211 111110000112 245677887655431 1456799999998776543
No 126
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=22.73 E-value=1.3e+02 Score=20.61 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=15.7
Q ss_pred CCcEEEEEeCCCCcEEEEE
Q 046476 327 LVSRVFIYDLKTQERRAIK 345 (376)
Q Consensus 327 ~~~~v~~ydl~t~~~~~v~ 345 (376)
+.-++|-||++|++++-++
T Consensus 39 ~~iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 39 GQIKIFKYDEDTNEITLKK 57 (63)
T ss_dssp TEEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEeCCCCCeEEEEE
Confidence 4558999999999998664
No 127
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.54 E-value=2.3e+02 Score=25.90 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=45.8
Q ss_pred CCCeEEEEEcCCCCeeecCCCCC----ccee-cCCceEECceEEEEEeCCCCCCCEEEEEEcCCceeEEEeC
Q 046476 177 GTPECEIFTLGTTSWRKIDAPPS----RIHF-RRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKL 243 (376)
Q Consensus 177 ~~~~~~vys~~t~~Wr~~~~~~~----~~~~-~~~~v~~~G~lywl~~~~~~~~~~il~fDl~~e~~~~i~~ 243 (376)
.+..+.+|+..+.+|........ ...+ ...-+++.|.+-.-.. ....+..||+++.+|..+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~----~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGT----NSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCC----CceeEEEEecCCCeeeecCC
Confidence 47899999999999998865531 1122 4667777776554331 26789999999999988754
No 128
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=21.64 E-value=5.1e+02 Score=23.98 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=35.6
Q ss_pred CCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcE
Q 046476 271 KNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQER 341 (376)
Q Consensus 271 ~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~ 341 (376)
...+-+|...+. .+.-|..+.. .-.+ +-+-...|+..++.. +.+..+..||.+|++.
T Consensus 68 Dr~I~LWnv~gd---ceN~~~lkgH---sgAV-----M~l~~~~d~s~i~S~---gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 68 DRAIVLWNVYGD---CENFWVLKGH---SGAV-----MELHGMRDGSHILSC---GTDKTVRGWDAETGKR 124 (338)
T ss_pred cceEEEEecccc---ccceeeeccc---ccee-----EeeeeccCCCEEEEe---cCCceEEEEeccccee
Confidence 778889975433 3555766522 1111 333223467777766 3688999999998865
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=21.50 E-value=3.5e+02 Score=26.90 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=52.0
Q ss_pred ceeEEEeCCCcc-------cCcceeEec-CCeE-EEEEec------CCCCCCeEEEEEEccCCCCCCCceeEEEEEeecc
Q 046476 236 EKFDIVKLPDEV-------RKHHDLIQA-EEKL-GVLDCD------DFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFD 300 (376)
Q Consensus 236 e~~~~i~~P~~~-------~~~~~L~~~-~g~L-~~~~~~------~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~ 300 (376)
...+..++|+.. ..-..+..+ .|.+ |.+... +..+..++.||-+...| .+..=..+.+ +..+
T Consensus 389 g~~qPvpfP~dal~g~gIPrharq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg--~k~PvsqLdc-l~rd 465 (705)
T KOG0639|consen 389 GQMQPVPFPPDALVGPGIPRHARQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPG--NKSPVSQLDC-LNRD 465 (705)
T ss_pred CcccCCCCCchhhcCCCCCchHHhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCC--CCCccccccc-cCcc
Confidence 344566777764 111223333 5554 445544 23567889999887664 3222222222 2111
Q ss_pred cccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEE
Q 046476 301 TIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERR 342 (376)
Q Consensus 301 ~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~ 342 (376)
. +.+.+-...||+-+++- .....|-+||+.+-+.+
T Consensus 466 n----yiRSckL~pdgrtLivG---GeastlsiWDLAapTpr 500 (705)
T KOG0639|consen 466 N----YIRSCKLLPDGRTLIVG---GEASTLSIWDLAAPTPR 500 (705)
T ss_pred c----ceeeeEecCCCceEEec---cccceeeeeeccCCCcc
Confidence 1 12445556788766654 14567888999876653
No 130
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=21.39 E-value=1.1e+02 Score=24.14 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=16.1
Q ss_pred CcEEEEEeCCCCcEEEEEECCc
Q 046476 328 VSRVFIYDLKTQERRAIKIPPV 349 (376)
Q Consensus 328 ~~~v~~ydl~t~~~~~v~~~~~ 349 (376)
...++.||.++++|++..++|.
T Consensus 28 ~v~vY~f~~~~~~W~K~~iEG~ 49 (122)
T PF06058_consen 28 HVVVYKFDHETNEWEKTDIEGT 49 (122)
T ss_dssp EEEEEEEETTTTEEEEEEEEEE
T ss_pred eEEEEeecCCCCcEeecCcEee
Confidence 4456667788888888887665
No 131
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.06 E-value=6.8e+02 Score=23.27 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred EEEEEEecCCCCCCcccceecCCCCCeEEEEEcCCCCeeecCCCCCccee-cCCceEECceEEEEEeCCCCC-CCEEEEE
Q 046476 154 KVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHF-RRQGLCANGFIHWIITNPRKT-KPVLAVF 231 (376)
Q Consensus 154 kVv~~~~~~~~~~~~~~~~~~~~~~~~~~vys~~t~~Wr~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~-~~~il~f 231 (376)
.+|.+..+.. ....+|+..++.=...-..++..|+ ......-||..-+.+++.... ++.|-+|
T Consensus 18 ~avafaRRPG---------------~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 18 EAVAFARRPG---------------TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred eEEEEEeCCC---------------cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Q ss_pred EcCCceeEEE-eCCCcc-cCcceeEecCC-eEEEEE
Q 046476 232 DVKEEKFDIV-KLPDEV-RKHHDLIQAEE-KLGVLD 264 (376)
Q Consensus 232 Dl~~e~~~~i-~~P~~~-~~~~~L~~~~g-~L~~~~ 264 (376)
|.. ..++.+ ..|... ...-.+..-+| .|+++.
T Consensus 83 d~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 83 DAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred ECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
No 132
>PRK04043 tolB translocation protein TolB; Provisional
Probab=20.80 E-value=7.8e+02 Score=23.89 Aligned_cols=123 Identities=8% Similarity=0.063 Sum_probs=0.0
Q ss_pred Cce-EEEEEeCCCCCCCEEEEEEcCCceeEEEeCCCcccCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCc
Q 046476 211 NGF-IHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEV 289 (376)
Q Consensus 211 ~G~-lywl~~~~~~~~~~il~fDl~~e~~~~i~~P~~~~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~ 289 (376)
||. +.+.+....+ ...|..+|+.+.+=+.+..............-+.+|.+.... ...-+||+++-.+ ..
T Consensus 198 DG~~~i~y~s~~~~-~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~dl~~----g~ 268 (419)
T PRK04043 198 KEQTAFYYTSYGER-KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP----KGQPDIYLYDTNT----KT 268 (419)
T ss_pred CCCcEEEEEEccCC-CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc----CCCcEEEEEECCC----Cc
Q ss_pred eeEEEEEeecccccccCcEeEEEccCCcEEEEecccCCCcEEEEEeCCCCcEEEEEECCc
Q 046476 290 WIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPV 349 (376)
Q Consensus 290 W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~~~~~~~v~~ydl~t~~~~~v~~~~~ 349 (376)
+.++.. .+.... .|. +.+||+-+.....-.+...|+.+|+++++.+.+...+.
T Consensus 269 ~~~LT~-~~~~d~-----~p~-~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~ 321 (419)
T PRK04043 269 LTQITN-YPGIDV-----NGN-FVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK 321 (419)
T ss_pred EEEccc-CCCccC-----ccE-ECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC
No 133
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.41 E-value=8.4e+02 Score=24.10 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=79.0
Q ss_pred CCeEEEEEcCCCCeeecCCCCCcceecCCc--eEECceEEEEEeCCCCCCCEEEEEEcCCc----eeEEEeCCCcccCcc
Q 046476 178 TPECEIFTLGTTSWRKIDAPPSRIHFRRQG--LCANGFIHWIITNPRKTKPVLAVFDVKEE----KFDIVKLPDEVRKHH 251 (376)
Q Consensus 178 ~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~--v~~~G~lywl~~~~~~~~~~il~fDl~~e----~~~~i~~P~~~~~~~ 251 (376)
..++.+|++.+..=+..-.. +...-.+ ...||.+.-.+. ..+.+-.||..+. .+..=+.|.. ..
T Consensus 47 S~rvqly~~~~~~~~k~~sr---Fk~~v~s~~fR~DG~LlaaGD----~sG~V~vfD~k~r~iLR~~~ah~apv~---~~ 116 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSR---FKDVVYSVDFRSDGRLLAAGD----ESGHVKVFDMKSRVILRQLYAHQAPVH---VT 116 (487)
T ss_pred ccEEEEEecchhhhhhhHHh---hccceeEEEeecCCeEEEccC----CcCcEEEeccccHHHHHHHhhccCcee---EE
Confidence 68999999998654432111 1112223 344699887765 2788999996652 1121223332 22
Q ss_pred eeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEcc-CCcEEEEecccCCCcE
Q 046476 252 DLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSN-NGEILLTEYKSSLVSR 330 (376)
Q Consensus 252 ~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~-~g~il~~~~~~~~~~~ 330 (376)
.....++.+.+.+.+ .....+|.+... . . ... +..+. ++.+..++.. ++.|++.- +.++.
T Consensus 117 ~f~~~d~t~l~s~sD----d~v~k~~d~s~a-----~--v-~~~-l~~ht---DYVR~g~~~~~~~hivvtG---sYDg~ 177 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSD----DKVVKYWDLSTA-----Y--V-QAE-LSGHT---DYVRCGDISPANDHIVVTG---SYDGK 177 (487)
T ss_pred EecccCCeEEEecCC----CceEEEEEcCCc-----E--E-EEE-ecCCc---ceeEeeccccCCCeEEEec---CCCce
Confidence 233445666555544 788899988753 2 2 333 33322 1224444433 55677665 36788
Q ss_pred EEEEeCCCCcEEEEEE
Q 046476 331 VFIYDLKTQERRAIKI 346 (376)
Q Consensus 331 v~~ydl~t~~~~~v~~ 346 (376)
|-.||.++.+-+-+++
T Consensus 178 vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVEL 193 (487)
T ss_pred EEEEEeccCCceeEEe
Confidence 9999999886434444
Done!