Query 046479
Match_columns 228
No_of_seqs 262 out of 1676
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 12:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 5.6E-41 1.2E-45 278.6 5.5 164 1-165 1-191 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 2.8E-34 6.1E-39 205.0 4.4 74 2-76 1-74 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1.5E-31 3.1E-36 193.7 4.8 78 2-79 1-78 (83)
4 smart00432 MADS MADS domain. 100.0 1.2E-30 2.5E-35 176.4 3.7 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 6.6E-30 1.4E-34 172.8 3.3 58 2-59 1-58 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 6.8E-29 1.5E-33 162.6 1.1 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.9 3.9E-21 8.5E-26 143.9 10.5 92 83-174 9-100 (100)
8 KOG0015 Regulator of arginine 99.8 2.2E-20 4.9E-25 160.2 1.1 65 2-67 63-127 (338)
9 COG5068 ARG80 Regulator of arg 99.5 1.3E-14 2.8E-19 130.1 2.6 60 1-60 81-140 (412)
10 PF06005 DUF904: Protein of un 95.3 0.14 3E-06 35.9 7.3 51 120-175 1-51 (72)
11 PRK04098 sec-independent trans 91.3 0.14 3E-06 41.3 2.1 80 34-128 8-89 (158)
12 PF10584 Proteasome_A_N: Prote 91.0 0.085 1.8E-06 28.7 0.5 15 42-56 2-16 (23)
13 PRK15422 septal ring assembly 88.4 3.4 7.3E-05 29.4 7.0 43 120-167 1-43 (79)
14 cd07429 Cby_like Chibby, a nuc 88.3 0.8 1.7E-05 34.6 4.0 26 149-174 72-97 (108)
15 PF01166 TSC22: TSC-22/dip/bun 85.8 1.8 4E-05 28.9 4.2 27 145-171 17-43 (59)
16 PF06698 DUF1192: Protein of u 85.5 1.4 3E-05 29.7 3.5 31 111-141 12-42 (59)
17 smart00787 Spc7 Spc7 kinetocho 85.3 6.7 0.00014 35.1 9.0 63 115-177 196-260 (312)
18 PF08317 Spc7: Spc7 kinetochor 84.8 23 0.0005 31.7 12.3 63 115-177 201-265 (325)
19 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.6 17 0.00036 28.2 10.5 30 145-174 101-130 (132)
20 PRK10884 SH3 domain-containing 83.1 22 0.00048 29.9 10.7 77 90-171 90-168 (206)
21 PRK13169 DNA replication intia 81.2 12 0.00027 28.3 7.7 49 122-175 7-55 (110)
22 COG3074 Uncharacterized protei 81.1 16 0.00034 25.4 7.8 49 120-173 1-49 (79)
23 PF06156 DUF972: Protein of un 81.1 13 0.00029 27.9 7.8 37 123-171 8-44 (107)
24 PF14662 CCDC155: Coiled-coil 75.4 47 0.001 27.7 11.5 75 89-174 18-92 (193)
25 TIGR02338 gimC_beta prefoldin, 75.1 32 0.00069 25.7 9.0 47 128-175 61-107 (110)
26 PF07106 TBPIP: Tat binding pr 72.9 23 0.00049 28.4 7.7 24 119-142 108-131 (169)
27 PF06156 DUF972: Protein of un 72.8 24 0.00052 26.5 7.2 27 151-177 31-57 (107)
28 PRK10884 SH3 domain-containing 72.3 30 0.00064 29.1 8.4 32 96-136 89-120 (206)
29 PRK09343 prefoldin subunit bet 69.6 48 0.001 25.3 8.7 45 131-176 68-112 (121)
30 COG2433 Uncharacterized conser 69.6 83 0.0018 30.9 11.5 85 90-176 419-508 (652)
31 PRK04654 sec-independent trans 67.7 1.4 3E-05 37.2 -0.6 35 34-73 8-42 (214)
32 KOG4797 Transcriptional regula 67.1 25 0.00054 26.6 6.0 25 146-170 71-95 (123)
33 PRK11637 AmiB activator; Provi 66.2 1.1E+02 0.0023 28.4 11.6 76 89-173 50-127 (428)
34 PRK01919 tatB sec-independent 66.1 4.6 0.0001 32.9 2.1 30 42-74 14-43 (169)
35 smart00338 BRLZ basic region l 65.9 37 0.0008 22.6 6.4 37 136-176 17-53 (65)
36 PF07716 bZIP_2: Basic region 65.8 33 0.00072 22.1 6.6 38 135-176 15-52 (54)
37 PF00170 bZIP_1: bZIP transcri 64.1 40 0.00087 22.4 6.6 36 136-175 17-52 (64)
38 PHA02592 52 DNA topisomerase I 63.3 66 0.0014 30.3 9.5 46 23-74 282-327 (439)
39 KOG0971 Microtubule-associated 62.6 1.6E+02 0.0035 30.5 12.2 53 89-141 328-389 (1243)
40 cd00187 TOP4c DNA Topoisomeras 62.6 43 0.00093 31.6 8.2 68 25-108 286-353 (445)
41 PRK13169 DNA replication intia 62.2 46 0.00099 25.2 6.8 31 145-175 18-48 (110)
42 TIGR02449 conserved hypothetic 61.9 49 0.0011 22.7 7.4 46 124-174 1-46 (65)
43 KOG4797 Transcriptional regula 61.7 15 0.00031 27.8 3.9 43 131-173 49-91 (123)
44 PF14645 Chibby: Chibby family 61.6 14 0.0003 28.3 3.9 25 149-173 71-95 (116)
45 smart00030 CLb CLUSTERIN Beta 61.2 22 0.00047 29.8 5.2 62 116-177 8-78 (206)
46 PF10504 DUF2452: Protein of u 59.9 44 0.00094 27.0 6.6 43 121-163 28-73 (159)
47 PF04849 HAP1_N: HAP1 N-termin 58.0 64 0.0014 28.9 8.0 51 125-175 215-267 (306)
48 KOG1962 B-cell receptor-associ 57.7 64 0.0014 27.4 7.6 54 120-173 155-210 (216)
49 PF06005 DUF904: Protein of un 57.3 53 0.0012 22.8 6.0 35 141-175 10-44 (72)
50 PRK11637 AmiB activator; Provi 56.6 1.7E+02 0.0036 27.1 11.9 16 92-107 46-61 (428)
51 PF02416 MttA_Hcf106: mttA/Hcf 56.4 4 8.8E-05 26.7 0.2 30 42-74 11-40 (53)
52 PF01166 TSC22: TSC-22/dip/bun 56.3 11 0.00025 25.2 2.3 28 148-175 13-40 (59)
53 TIGR02894 DNA_bind_RsfA transc 56.0 1.1E+02 0.0024 24.8 12.1 60 117-176 77-138 (161)
54 PF15397 DUF4618: Domain of un 55.8 1.2E+02 0.0027 26.4 9.3 36 141-176 185-220 (258)
55 PF07888 CALCOCO1: Calcium bin 55.5 2E+02 0.0042 28.0 11.3 24 149-172 213-236 (546)
56 PF05529 Bap31: B-cell recepto 55.2 90 0.002 25.5 8.2 55 122-176 124-188 (192)
57 PF09789 DUF2353: Uncharacteri 54.8 1.6E+02 0.0036 26.5 10.3 44 132-176 70-113 (319)
58 PRK13824 replication initiatio 54.5 23 0.0005 32.9 4.9 97 35-142 104-212 (404)
59 COG0216 PrfA Protein chain rel 54.2 1.1E+02 0.0025 27.8 9.0 91 62-168 8-102 (363)
60 cd00632 Prefoldin_beta Prefold 53.6 43 0.00092 24.7 5.4 46 129-175 58-103 (105)
61 PF01920 Prefoldin_2: Prefoldi 53.1 83 0.0018 22.6 7.1 26 148-173 75-100 (106)
62 KOG3759 Uncharacterized RUN do 52.5 1.8E+02 0.0039 27.8 10.2 53 115-174 197-252 (621)
63 PF10211 Ax_dynein_light: Axon 52.4 65 0.0014 26.6 6.8 12 63-74 93-104 (189)
64 TIGR01478 STEVOR variant surfa 52.4 18 0.00039 32.0 3.6 45 7-72 25-69 (295)
65 PF01093 Clusterin: Clusterin; 52.4 35 0.00076 32.1 5.7 62 116-177 2-72 (436)
66 PF04977 DivIC: Septum formati 52.0 36 0.00077 23.2 4.5 30 146-175 21-50 (80)
67 cd01109 HTH_YyaN Helix-Turn-He 51.4 82 0.0018 23.3 6.7 53 119-172 57-109 (113)
68 PF03980 Nnf1: Nnf1 ; InterPr 51.4 49 0.0011 24.4 5.5 48 116-176 60-107 (109)
69 COG4467 Regulator of replicati 51.0 96 0.0021 23.5 6.7 40 122-173 7-46 (114)
70 PHA02109 hypothetical protein 50.6 56 0.0012 26.9 5.9 84 64-165 138-223 (233)
71 PF09278 MerR-DNA-bind: MerR, 50.2 63 0.0014 21.1 5.4 49 119-168 14-62 (65)
72 PF15619 Lebercilin: Ciliary p 49.5 1.5E+02 0.0033 24.6 10.5 28 149-176 164-191 (194)
73 PF12925 APP_E2: E2 domain of 49.1 1.6E+02 0.0034 24.6 10.5 93 62-176 7-101 (193)
74 PRK14860 tatA twin arginine tr 48.9 6.9 0.00015 26.7 0.4 39 34-77 8-46 (64)
75 KOG4643 Uncharacterized coiled 48.8 1.9E+02 0.0041 30.3 10.3 19 90-108 478-496 (1195)
76 PF04880 NUDE_C: NUDE protein, 48.7 34 0.00075 27.8 4.5 43 125-172 2-47 (166)
77 PRK00888 ftsB cell division pr 48.5 51 0.0011 24.6 5.1 29 147-175 32-60 (105)
78 COG5068 ARG80 Regulator of arg 48.1 9.2 0.0002 35.4 1.2 60 8-73 18-77 (412)
79 smart00340 HALZ homeobox assoc 47.6 53 0.0012 20.5 4.1 26 151-176 7-32 (44)
80 PRK00182 tatB sec-independent 47.6 8.7 0.00019 31.1 0.9 37 34-75 9-45 (160)
81 TIGR03752 conj_TIGR03752 integ 45.6 1.8E+02 0.0039 27.7 9.2 45 126-174 97-141 (472)
82 TIGR01411 tatAE twin arginine- 45.1 8.7 0.00019 24.5 0.4 37 34-75 6-42 (47)
83 TIGR02231 conserved hypothetic 44.8 2.7E+02 0.0058 26.5 10.7 49 118-174 122-170 (525)
84 PF07544 Med9: RNA polymerase 44.6 1.1E+02 0.0024 21.6 6.7 45 87-134 22-70 (83)
85 PF04859 DUF641: Plant protein 44.4 1.5E+02 0.0033 23.1 11.2 51 121-172 81-131 (131)
86 cd04769 HTH_MerR2 Helix-Turn-H 44.2 89 0.0019 23.3 6.0 55 119-173 56-110 (116)
87 KOG0250 DNA repair protein RAD 42.9 3.4E+02 0.0075 28.5 11.3 22 89-110 664-685 (1074)
88 PF10186 Atg14: UV radiation r 42.8 2.1E+02 0.0047 24.4 10.2 8 56-64 12-19 (302)
89 PRK01371 sec-independent trans 42.6 27 0.00058 27.6 2.9 35 34-73 8-42 (137)
90 PF15254 CCDC14: Coiled-coil d 41.8 4E+02 0.0086 27.2 12.9 112 60-176 355-482 (861)
91 PRK13729 conjugal transfer pil 41.8 1.2E+02 0.0027 28.8 7.6 31 145-175 93-123 (475)
92 KOG4643 Uncharacterized coiled 41.4 1.2E+02 0.0025 31.7 7.7 46 131-176 282-328 (1195)
93 PF09744 Jnk-SapK_ap_N: JNK_SA 41.1 1.4E+02 0.0031 24.0 6.9 27 148-174 88-114 (158)
94 PF05812 Herpes_BLRF2: Herpesv 41.1 46 0.00099 25.6 3.9 26 150-175 4-29 (118)
95 cd04787 HTH_HMRTR_unk Helix-Tu 40.8 1.4E+02 0.0029 22.9 6.7 55 119-174 57-111 (133)
96 PF04849 HAP1_N: HAP1 N-termin 40.7 46 0.001 29.8 4.4 26 150-175 161-186 (306)
97 KOG0804 Cytoplasmic Zn-finger 40.6 2.6E+02 0.0057 26.5 9.3 35 137-171 377-411 (493)
98 PF08781 DP: Transcription fac 40.5 1.8E+02 0.004 23.0 7.3 45 124-170 2-46 (142)
99 PHA03155 hypothetical protein; 40.4 1.6E+02 0.0036 22.4 8.7 60 84-143 6-65 (115)
100 PRK05561 DNA topoisomerase IV 40.2 2.1E+02 0.0045 28.9 9.3 107 44-164 337-459 (742)
101 PHA03155 hypothetical protein; 39.3 45 0.00098 25.4 3.5 25 151-175 10-34 (115)
102 PHA03162 hypothetical protein; 39.0 44 0.00096 26.1 3.5 26 150-175 14-39 (135)
103 TIGR00606 rad50 rad50. This fa 38.9 4.1E+02 0.009 28.6 11.9 54 119-173 821-881 (1311)
104 PRK01470 tatA twin arginine tr 38.8 14 0.0003 24.1 0.6 31 43-76 14-44 (51)
105 COG2433 Uncharacterized conser 38.8 3.6E+02 0.0079 26.6 10.3 16 91-106 441-456 (652)
106 PF05812 Herpes_BLRF2: Herpesv 38.6 1.8E+02 0.0039 22.3 7.3 57 88-144 5-65 (118)
107 PF09789 DUF2353: Uncharacteri 38.5 3E+02 0.0065 24.8 9.8 100 20-135 34-138 (319)
108 TIGR01950 SoxR redox-sensitive 38.4 1E+02 0.0022 24.1 5.7 55 119-173 57-111 (142)
109 PF10623 PilI: Plasmid conjuga 38.3 23 0.00049 25.2 1.7 32 42-73 8-41 (83)
110 PRK01770 sec-independent trans 38.3 34 0.00073 28.0 2.9 36 34-74 8-43 (171)
111 cd01107 HTH_BmrR Helix-Turn-He 38.2 1.3E+02 0.0028 22.1 6.0 48 119-172 58-105 (108)
112 PF09798 LCD1: DNA damage chec 38.0 1.5E+02 0.0033 29.4 7.8 53 123-175 4-59 (654)
113 PRK15422 septal ring assembly 37.5 1.1E+02 0.0025 21.7 5.1 33 142-174 11-43 (79)
114 TIGR02209 ftsL_broad cell divi 37.2 97 0.0021 21.5 4.9 31 145-175 27-57 (85)
115 TIGR02894 DNA_bind_RsfA transc 36.8 1.8E+02 0.0039 23.6 6.8 24 89-112 107-130 (161)
116 PRK03100 sec-independent trans 36.2 17 0.00038 28.6 0.9 37 33-74 8-44 (136)
117 smart00338 BRLZ basic region l 36.1 1.1E+02 0.0024 20.3 4.9 28 145-172 36-63 (65)
118 PTZ00108 DNA topoisomerase 2-l 35.7 3.8E+02 0.0083 29.2 10.8 27 44-73 962-988 (1388)
119 PF14009 DUF4228: Domain of un 35.5 24 0.00052 27.8 1.7 34 40-74 14-47 (181)
120 PRK00191 tatA twin arginine tr 35.1 13 0.00028 26.8 0.0 38 34-76 7-44 (84)
121 PHA01750 hypothetical protein 34.9 1.5E+02 0.0033 20.4 6.7 22 150-171 50-71 (75)
122 TIGR02047 CadR-PbrR Cd(II)/Pb( 34.8 1.9E+02 0.004 22.0 6.6 54 119-173 57-110 (127)
123 COG1579 Zn-ribbon protein, pos 34.7 3E+02 0.0065 23.7 11.2 23 120-142 86-108 (239)
124 cd01108 HTH_CueR Helix-Turn-He 34.7 2E+02 0.0043 21.8 6.7 53 119-172 57-109 (127)
125 PRK10227 DNA-binding transcrip 34.4 1.9E+02 0.0041 22.4 6.6 54 119-173 57-110 (135)
126 PF11365 DUF3166: Protein of u 34.1 1.1E+02 0.0024 22.5 4.9 32 145-176 11-42 (96)
127 PF09941 DUF2173: Uncharacteri 33.8 25 0.00055 26.5 1.4 27 32-59 3-29 (108)
128 KOG0963 Transcription factor/C 33.7 3.6E+02 0.0078 26.6 9.4 159 16-177 33-210 (629)
129 COG0139 HisI Phosphoribosyl-AM 33.5 5.7 0.00012 30.1 -2.1 37 17-53 50-95 (111)
130 PRK14859 tatA twin arginine tr 33.5 15 0.00032 25.0 0.1 39 34-77 8-46 (63)
131 cd04776 HTH_GnyR Helix-Turn-He 33.3 2.1E+02 0.0045 21.5 7.1 56 119-174 55-112 (118)
132 PF09726 Macoilin: Transmembra 33.3 3.8E+02 0.0083 26.9 9.9 87 90-177 422-516 (697)
133 cd02980 TRX_Fd_family Thioredo 33.1 24 0.00053 23.9 1.2 31 39-70 47-77 (77)
134 KOG0709 CREB/ATF family transc 33.0 77 0.0017 30.0 4.7 26 151-176 288-313 (472)
135 cd04770 HTH_HMRTR Helix-Turn-H 32.9 2E+02 0.0043 21.4 6.4 52 120-172 58-109 (123)
136 KOG0183 20S proteasome, regula 32.8 19 0.00042 30.5 0.7 19 41-59 4-24 (249)
137 PTZ00370 STEVOR; Provisional 32.8 57 0.0012 28.9 3.6 27 37-72 42-68 (296)
138 PF11802 CENP-K: Centromere-as 32.8 3.4E+02 0.0075 23.8 11.0 55 90-144 56-113 (268)
139 cd01282 HTH_MerR-like_sg3 Heli 32.6 1.9E+02 0.004 21.4 6.1 50 120-170 57-109 (112)
140 TIGR02338 gimC_beta prefoldin, 32.5 1.5E+02 0.0032 22.0 5.5 14 61-74 3-16 (110)
141 PF11629 Mst1_SARAH: C termina 32.5 55 0.0012 21.1 2.6 17 116-132 4-20 (49)
142 KOG0243 Kinesin-like protein [ 32.4 6.2E+02 0.013 26.7 11.6 58 90-147 408-472 (1041)
143 PF08946 Osmo_CC: Osmosensory 32.3 1E+02 0.0022 19.6 3.7 21 145-165 22-42 (46)
144 TIGR01410 tatB twin arginine-t 32.0 15 0.00033 26.1 0.0 31 42-75 13-43 (80)
145 PF12018 DUF3508: Domain of un 31.9 15 0.00033 32.3 -0.1 39 19-67 210-248 (281)
146 PHA03162 hypothetical protein; 31.9 2.5E+02 0.0054 22.0 8.3 58 86-143 13-74 (135)
147 PF06785 UPF0242: Uncharacteri 31.5 3.8E+02 0.0083 24.5 8.6 44 131-175 131-174 (401)
148 KOG4603 TBP-1 interacting prot 31.4 1.1E+02 0.0024 25.2 4.8 57 86-142 79-138 (201)
149 PF02151 UVR: UvrB/uvrC motif; 31.1 1.1E+02 0.0024 17.9 3.7 33 124-156 3-35 (36)
150 KOG0933 Structural maintenance 30.7 4.9E+02 0.011 27.5 10.1 26 47-73 654-679 (1174)
151 cd03064 TRX_Fd_NuoE TRX-like [ 30.5 25 0.00055 24.3 0.9 30 38-70 51-80 (80)
152 PRK15002 redox-sensitivie tran 30.2 1.8E+02 0.004 23.1 6.0 53 120-172 68-120 (154)
153 PRK14858 tatA twin arginine tr 30.2 18 0.0004 27.3 0.2 30 42-74 14-43 (108)
154 PF04912 Dynamitin: Dynamitin 29.4 1.4E+02 0.003 27.3 5.8 17 90-106 98-114 (388)
155 PF04999 FtsL: Cell division p 29.4 1.5E+02 0.0032 21.2 4.9 31 145-175 38-68 (97)
156 TIGR02044 CueR Cu(I)-responsiv 29.2 2.5E+02 0.0055 21.2 6.6 53 120-173 58-110 (127)
157 COG4831 Roadblock/LC7 domain [ 29.2 23 0.00049 26.2 0.5 29 31-60 4-32 (109)
158 TIGR02043 ZntR Zn(II)-responsi 29.2 2E+02 0.0043 22.0 5.9 54 119-173 58-112 (131)
159 KOG0182 20S proteasome, regula 29.2 23 0.0005 30.1 0.6 17 40-56 8-24 (246)
160 COG4477 EzrA Negative regulato 29.1 5.5E+02 0.012 25.0 10.8 60 118-178 373-432 (570)
161 cd04785 HTH_CadR-PbrR-like Hel 29.0 2.5E+02 0.0055 21.1 6.6 53 120-173 58-110 (126)
162 PRK09514 zntR zinc-responsive 29.0 2E+02 0.0044 22.3 6.0 54 119-172 58-111 (140)
163 PF04945 YHS: YHS domain; Int 28.9 30 0.00065 21.5 1.0 25 39-63 6-33 (47)
164 PF09730 BicD: Microtubule-ass 28.9 6.2E+02 0.013 25.6 10.7 17 158-174 130-146 (717)
165 TIGR01069 mutS2 MutS2 family p 28.3 6.4E+02 0.014 25.6 12.2 33 123-155 539-571 (771)
166 PF07888 CALCOCO1: Calcium bin 28.2 5.7E+02 0.012 24.9 10.7 21 151-171 194-214 (546)
167 PF07851 TMPIT: TMPIT-like pro 28.1 4E+02 0.0087 24.2 8.3 43 93-141 4-46 (330)
168 cd01110 HTH_SoxR Helix-Turn-He 28.0 2.3E+02 0.005 21.9 6.1 53 119-172 57-110 (139)
169 PF13758 Prefoldin_3: Prefoldi 28.0 2.5E+02 0.0055 20.8 8.1 17 89-105 8-24 (99)
170 cd04784 HTH_CadR-PbrR Helix-Tu 28.0 2.6E+02 0.0057 21.0 6.7 53 119-172 57-109 (127)
171 PF13815 Dzip-like_N: Iguana/D 27.8 2.6E+02 0.0057 20.9 6.6 24 148-171 93-116 (118)
172 PF10267 Tmemb_cc2: Predicted 27.8 2.1E+02 0.0045 26.6 6.6 71 89-168 7-81 (395)
173 TIGR02051 MerR Hg(II)-responsi 27.8 2.7E+02 0.0058 21.0 6.4 51 120-173 57-107 (124)
174 PF04111 APG6: Autophagy prote 27.8 4.4E+02 0.0096 23.5 11.1 18 123-140 64-81 (314)
175 PF07558 Shugoshin_N: Shugoshi 27.6 82 0.0018 19.8 2.8 32 142-173 14-45 (46)
176 COG4467 Regulator of replicati 27.5 2.8E+02 0.006 21.0 6.9 19 156-174 36-54 (114)
177 KOG1853 LIS1-interacting prote 27.4 4.3E+02 0.0093 23.2 10.2 54 121-176 131-184 (333)
178 PRK09039 hypothetical protein; 27.4 4.6E+02 0.01 23.6 9.1 40 125-169 153-193 (343)
179 KOG0837 Transcriptional activa 27.2 3E+02 0.0065 24.2 7.0 51 122-174 201-252 (279)
180 KOG4360 Uncharacterized coiled 27.0 4.8E+02 0.01 25.3 8.8 22 147-168 238-259 (596)
181 PLN03237 DNA topoisomerase 2; 27.0 8.8E+02 0.019 26.7 11.9 129 45-178 989-1185(1465)
182 PLN03128 DNA topoisomerase 2; 26.9 5.4E+02 0.012 27.5 10.1 28 44-74 961-988 (1135)
183 PF11932 DUF3450: Protein of u 26.8 81 0.0018 27.0 3.6 107 43-156 7-116 (251)
184 COG4917 EutP Ethanolamine util 26.7 29 0.00063 27.3 0.7 25 35-59 59-83 (148)
185 KOG0977 Nuclear envelope prote 26.6 5.2E+02 0.011 25.2 9.2 19 90-108 110-128 (546)
186 cd01106 HTH_TipAL-Mta Helix-Tu 26.4 2.2E+02 0.0048 20.6 5.5 15 119-133 57-71 (103)
187 PF01502 PRA-CH: Phosphoribosy 26.3 5.4 0.00012 28.2 -3.1 37 17-53 18-63 (75)
188 PRK03625 tatE twin arginine tr 26.3 26 0.00056 24.2 0.3 31 42-75 14-44 (67)
189 cd04783 HTH_MerR1 Helix-Turn-H 26.2 2.5E+02 0.0053 21.2 5.9 51 120-173 58-108 (126)
190 COG1382 GimC Prefoldin, chaper 26.0 3.1E+02 0.0067 21.1 6.4 30 146-175 81-110 (119)
191 PRK00404 tatB sec-independent 25.9 22 0.00048 28.2 -0.1 30 41-73 13-42 (141)
192 TIGR03007 pepcterm_ChnLen poly 25.9 5.5E+02 0.012 24.0 10.1 71 63-135 140-216 (498)
193 PF11291 DUF3091: Protein of u 25.7 2.4E+02 0.0052 21.0 5.4 47 89-135 21-67 (100)
194 PRK09413 IS2 repressor TnpA; R 25.6 1.7E+02 0.0037 21.9 4.9 28 147-174 76-103 (121)
195 PF07407 Seadorna_VP6: Seadorn 25.6 2E+02 0.0044 26.1 5.9 48 116-177 25-72 (420)
196 PF05130 FlgN: FlgN protein; 25.4 2.8E+02 0.0061 20.4 6.9 14 152-165 91-104 (143)
197 PF06937 EURL: EURL protein; 25.4 1.2E+02 0.0025 26.8 4.2 35 105-139 204-238 (285)
198 PRK13923 putative spore coat p 25.4 2.8E+02 0.006 22.7 6.2 26 148-173 110-135 (170)
199 PRK11239 hypothetical protein; 25.2 1.5E+02 0.0032 25.2 4.7 58 13-74 73-144 (215)
200 cd04779 HTH_MerR-like_sg4 Heli 25.1 3.3E+02 0.0071 21.1 7.8 50 120-170 57-109 (134)
201 TIGR02449 conserved hypothetic 24.5 2.4E+02 0.0051 19.3 5.3 28 147-174 5-32 (65)
202 TIGR03185 DNA_S_dndD DNA sulfu 24.4 6.8E+02 0.015 24.6 11.8 23 90-112 395-417 (650)
203 PF14723 SSFA2_C: Sperm-specif 24.4 73 0.0016 26.1 2.7 19 123-141 159-177 (179)
204 PRK03947 prefoldin subunit alp 24.3 3.3E+02 0.0071 20.8 10.2 44 131-175 91-134 (140)
205 PRK10869 recombination and rep 24.3 6.5E+02 0.014 24.3 10.5 69 94-173 297-365 (553)
206 KOG0946 ER-Golgi vesicle-tethe 24.3 8E+02 0.017 25.3 11.4 82 89-175 614-697 (970)
207 KOG0978 E3 ubiquitin ligase in 24.1 7.5E+02 0.016 24.9 10.8 31 147-177 592-622 (698)
208 PF07798 DUF1640: Protein of u 23.8 3.9E+02 0.0084 21.5 7.9 52 121-172 45-96 (177)
209 KOG3684 Ca2+-activated K+ chan 23.6 4.3E+02 0.0093 25.2 7.8 44 121-165 421-464 (489)
210 PF09158 MotCF: Bacteriophage 23.5 12 0.00026 28.0 -1.8 54 5-74 19-73 (103)
211 PF03428 RP-C: Replication pro 23.5 1.1E+02 0.0024 25.1 3.6 64 41-112 96-170 (177)
212 TIGR03545 conserved hypothetic 23.4 7E+02 0.015 24.3 10.7 52 90-143 179-232 (555)
213 PF12548 DUF3740: Sulfatase pr 23.0 1.3E+02 0.0029 23.8 3.9 39 132-171 97-135 (145)
214 PF03670 UPF0184: Uncharacteri 22.9 3E+02 0.0064 19.8 7.8 51 117-175 20-73 (83)
215 KOG4637 Adaptor for phosphoino 22.9 54 0.0012 30.3 1.8 44 33-76 367-414 (464)
216 PF05700 BCAS2: Breast carcino 22.7 4.6E+02 0.01 22.0 8.0 71 89-164 146-218 (221)
217 PF05667 DUF812: Protein of un 22.4 4.3E+02 0.0094 25.9 8.0 135 28-177 381-533 (594)
218 TIGR02976 phageshock_pspB phag 22.3 1.1E+02 0.0025 21.4 3.0 21 89-109 45-65 (75)
219 TIGR02168 SMC_prok_B chromosom 22.2 5.8E+02 0.013 26.3 9.4 24 47-70 139-164 (1179)
220 PF09726 Macoilin: Transmembra 22.2 4.4E+02 0.0096 26.4 8.1 20 90-109 457-476 (697)
221 KOG0184 20S proteasome, regula 22.2 43 0.00093 28.7 1.0 24 36-59 3-28 (254)
222 PF10491 Nrf1_DNA-bind: NLS-bi 22.1 1.2E+02 0.0025 25.7 3.5 49 25-74 34-89 (214)
223 KOG0930 Guanine nucleotide exc 22.0 1.6E+02 0.0035 26.3 4.5 43 117-168 8-50 (395)
224 PF04566 RNA_pol_Rpb2_4: RNA p 21.9 31 0.00068 23.3 0.1 31 22-54 23-54 (63)
225 KOG4673 Transcription factor T 21.9 8E+02 0.017 24.9 9.5 25 142-166 605-629 (961)
226 cd01668 TGS_RelA_SpoT TGS_RelA 21.8 84 0.0018 19.8 2.2 26 45-70 1-26 (60)
227 PF09755 DUF2046: Uncharacteri 21.8 5.9E+02 0.013 22.9 10.8 25 150-174 255-279 (310)
228 PF10018 Med4: Vitamin-D-recep 21.8 4.4E+02 0.0096 21.4 8.5 52 122-175 4-55 (188)
229 PF13870 DUF4201: Domain of un 21.8 4.2E+02 0.0091 21.1 12.4 84 90-176 10-104 (177)
230 PRK10265 chaperone-modulator p 21.7 1.9E+02 0.0042 21.1 4.3 78 32-113 10-98 (101)
231 KOG2264 Exostosin EXT1L [Signa 21.7 1.1E+02 0.0024 29.9 3.7 20 89-108 103-122 (907)
232 PF12329 TMF_DNA_bd: TATA elem 21.7 2.8E+02 0.0061 19.1 5.6 25 149-173 33-57 (74)
233 PRK14127 cell division protein 21.6 2.8E+02 0.006 20.9 5.2 47 116-177 19-65 (109)
234 PF10234 Cluap1: Clusterin-ass 21.6 5.6E+02 0.012 22.5 7.8 45 121-166 156-200 (267)
235 cd04786 HTH_MerR-like_sg7 Heli 21.5 3.5E+02 0.0076 20.7 6.0 54 120-175 58-111 (131)
236 PF08614 ATG16: Autophagy prot 21.2 4.6E+02 0.0099 21.4 10.6 23 151-173 160-182 (194)
237 COG3883 Uncharacterized protei 21.2 5.7E+02 0.012 22.5 7.9 51 123-178 45-95 (265)
238 COG5420 Uncharacterized conser 21.2 2E+02 0.0044 19.6 3.8 31 145-175 2-32 (71)
239 PRK14857 tatA twin arginine tr 21.0 33 0.00072 25.0 0.1 30 42-74 16-45 (90)
240 PF04899 MbeD_MobD: MbeD/MobD 20.9 2.9E+02 0.0064 19.1 7.8 47 127-173 3-52 (70)
241 PF06785 UPF0242: Uncharacteri 20.9 6.6E+02 0.014 23.0 9.8 51 123-174 102-152 (401)
242 PF11853 DUF3373: Protein of u 20.6 83 0.0018 30.1 2.6 29 149-177 31-59 (489)
243 PF03961 DUF342: Protein of un 20.6 5.4E+02 0.012 23.9 8.1 27 149-175 382-408 (451)
244 PF07676 PD40: WD40-like Beta 20.6 45 0.00097 19.4 0.6 19 42-60 10-28 (39)
245 PRK04561 tatA twin arginine tr 20.5 54 0.0012 23.1 1.0 31 43-76 15-45 (75)
246 KOG0994 Extracellular matrix g 20.4 7.2E+02 0.016 26.9 9.1 108 21-146 1176-1290(1758)
247 TIGR02054 MerD mercuric resist 20.3 3.6E+02 0.0078 20.5 5.7 51 119-172 60-110 (120)
248 PF04697 Pinin_SDK_N: pinin/SD 20.1 1.6E+02 0.0036 22.9 3.7 34 89-122 6-39 (134)
249 PF12537 DUF3735: Protein of u 20.1 1.7E+02 0.0037 20.1 3.5 25 122-146 47-71 (72)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=5.6e-41 Score=278.57 Aligned_cols=164 Identities=43% Similarity=0.618 Sum_probs=135.1
Q ss_pred CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCccccccccc-chhHHHHHHHhhccCCCC
Q 046479 1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF-GMAKILERYRQYCYTSQE 79 (228)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~-s~~~ileRY~~~~~~~~~ 79 (228)
|||+||+|+||+|+++|||||+|||+||||||+|||||||||||||||||+|++|+|++++ +|..|++||.........
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999998843 499999999987766543
Q ss_pred CCCCCCcch---------------------HHHHHHHHHHHHHHHHHHH---HhhhhcCCCCCCCCH-HHHHHHHHHHHH
Q 046479 80 PIDINQLEP---------------------EALFREILRLRALRESLER---SQRHFLGEDLGTLGV-KELQKLEKQLDK 134 (228)
Q Consensus 80 ~~~~~~~e~---------------------q~l~~E~~kLk~kie~Lq~---~~r~l~Ge~L~~LS~-~EL~~LE~qLe~ 134 (228)
. .....+. +.+..+...++...+.++. .++++.|++|.+++. .+|..++.+++.
T Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~ 159 (195)
T KOG0014|consen 81 K-KRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLES 159 (195)
T ss_pred c-cccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHH
Confidence 3 2222211 1133445556666666653 478999999999999 999999999999
Q ss_pred hhHHHHHHHhhhHHHHHH-HHHHHHHhHHHHH
Q 046479 135 TLSLSRQRKTDLMRQHLE-TLQKKAHDLEEEN 165 (228)
Q Consensus 135 sL~~IR~rK~ql~~~~i~-~LkkKe~~L~eeN 165 (228)
++..+|..+...+.+++. .++.++..+.+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
T KOG0014|consen 160 SLHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN 191 (195)
T ss_pred hhcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence 999999999999999887 6666666555443
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=2.8e-34 Score=204.99 Aligned_cols=74 Identities=65% Similarity=0.978 Sum_probs=71.1
Q ss_pred CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccC
Q 046479 2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYT 76 (228)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~ 76 (228)
||+||+|++|||+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|+| ++++.||+||...+..
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s-~s~~~vl~ry~~~~~~ 74 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS-PSMEKIIERYQKTSGS 74 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC-CCHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999999999999999999999999999 5689999999998754
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=1.5e-31 Score=193.68 Aligned_cols=78 Identities=42% Similarity=0.695 Sum_probs=72.6
Q ss_pred CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCCCC
Q 046479 2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQE 79 (228)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~~ 79 (228)
||+||+|++|+|+.+|+|||+||+.||||||+||||||||+||+|||||+|++|+|++++++..++++|...+...+.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERK 78 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhh
Confidence 899999999999999999999999999999999999999999999999999999988755599999999988765544
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=1.2e-30 Score=176.40 Aligned_cols=59 Identities=66% Similarity=1.024 Sum_probs=57.7
Q ss_pred CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccc
Q 046479 2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60 (228)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~ 60 (228)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999873
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=6.6e-30 Score=172.82 Aligned_cols=58 Identities=66% Similarity=1.038 Sum_probs=57.2
Q ss_pred CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCccccccc
Q 046479 2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS 59 (228)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s 59 (228)
||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|++|+|++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999987
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=6.8e-29 Score=162.63 Aligned_cols=51 Identities=57% Similarity=0.916 Sum_probs=47.2
Q ss_pred eeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCccccccc
Q 046479 9 ERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS 59 (228)
Q Consensus 9 krIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s 59 (228)
|+|+|++.|++||+|||.||||||+|||+||||+||+|||||+|++|.|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999987
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.85 E-value=3.9e-21 Score=143.91 Aligned_cols=92 Identities=47% Similarity=0.695 Sum_probs=87.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHH
Q 046479 83 INQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLE 162 (228)
Q Consensus 83 ~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~ 162 (228)
.++.+.+.|..++.+|+.+++.|+..+|+++|++|++||++||++||++|+.+|.+||+||+++|.++|..|++|++.|.
T Consensus 9 ~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~ 88 (100)
T PF01486_consen 9 LWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELE 88 (100)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 046479 163 EENKQLKFKLEE 174 (228)
Q Consensus 163 eeN~~L~~k~~~ 174 (228)
++|..|+.++.|
T Consensus 89 ~en~~L~~~~~e 100 (100)
T PF01486_consen 89 EENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHHhcC
Confidence 999999999863
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.78 E-value=2.2e-20 Score=160.24 Aligned_cols=65 Identities=40% Similarity=0.695 Sum_probs=60.7
Q ss_pred CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHH
Q 046479 2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKIL 67 (228)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~il 67 (228)
||.||+|++|||+..|.||||||+.||||||+|||||.|.+|-|+|.|.+|-+|.|++ +.++.||
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaT-pKLep~i 127 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-PKLEPMI 127 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecc-ccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999 4454444
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.48 E-value=1.3e-14 Score=130.06 Aligned_cols=60 Identities=38% Similarity=0.633 Sum_probs=58.7
Q ss_pred CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccc
Q 046479 1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60 (228)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~ 60 (228)
|||+|+.|..|+|+.+|.|||+||+.||+|||+||+||.|.+|.++|.|.+|+++.|+++
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp 140 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC
Confidence 789999999999999999999999999999999999999999999999999999999984
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.26 E-value=0.14 Score=35.93 Aligned_cols=51 Identities=27% Similarity=0.468 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+|++.|.+||..+..++..|. ++..+++.|+.+-..|.++|..|+.+....
T Consensus 1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 578999999999999999984 455677888888777777777776665443
No 11
>PRK04098 sec-independent translocase; Provisional
Probab=91.31 E-value=0.14 Score=41.27 Aligned_cols=80 Identities=23% Similarity=0.237 Sum_probs=44.4
Q ss_pred hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCCCCCCCCCCcc--hHHHHHHHHHHHHHHHHHHHHhhh
Q 046479 34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLE--PEALFREILRLRALRESLERSQRH 111 (228)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~~~~~~~~~e--~q~l~~E~~kLk~kie~Lq~~~r~ 111 (228)
||-|+ +=||||||+| +||+++.. .+-+.+-.|++.....+.. .+.+ ...++.+..+.+..++....+.|.
T Consensus 8 EllvI--~vVaLlvfGP-~KLP~~~r--~lGk~ir~~K~~~~~~k~~---l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 8 EILVI--LVVAIIFLGP-DKLPQAMV--DIAKFFKAVKKTINDAKST---LDKEINIEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred HHHHH--HHHHHhhcCc-hHHHHHHH--HHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444 3589999999 58988876 4777888887765432211 1111 124445555555554444443332
Q ss_pred hcCCCCCCCCHHHHHHH
Q 046479 112 FLGEDLGTLGVKELQKL 128 (228)
Q Consensus 112 l~Ge~L~~LS~~EL~~L 128 (228)
. +++++|..+
T Consensus 80 ~-------~~~eel~~~ 89 (158)
T PRK04098 80 K-------LKFEELDDL 89 (158)
T ss_pred c-------cChHHHHHH
Confidence 1 455555555
No 12
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=91.04 E-value=0.085 Score=28.68 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.1
Q ss_pred chhheeeecCCcccc
Q 046479 42 EVALIIFSSHGMLFE 56 (228)
Q Consensus 42 eValIvfS~~Gkl~e 56 (228)
|-.+.+|||.|++|.
T Consensus 2 D~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 2 DRSITTFSPDGRLFQ 16 (23)
T ss_dssp SSSTTSBBTTSSBHH
T ss_pred CCCceeECCCCeEEe
Confidence 345779999999985
No 13
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.42 E-value=3.4 Score=29.37 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQ 167 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~ 167 (228)
+|++=|.+||..+..++.-| .++.=+|++||.|-..|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999888888877 45556677777776666665444
No 14
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=88.26 E-value=0.8 Score=34.61 Aligned_cols=26 Identities=46% Similarity=0.630 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
..+..||+|.+.|+|||+.|+-|++-
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999874
No 15
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.79 E-value=1.8 Score=28.90 Aligned_cols=27 Identities=30% Similarity=0.603 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k 171 (228)
+.+.++|.+|..+...|+.||..|+..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677777777777777777777653
No 16
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=85.46 E-value=1.4 Score=29.68 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=24.8
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHhhHHHHH
Q 046479 111 HFLGEDLGTLGVKELQKLEKQLDKTLSLSRQ 141 (228)
Q Consensus 111 ~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~ 141 (228)
+..|+||+.||++||..--..|+.-+.+++.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999877777666666654
No 17
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.34 E-value=6.7 Score=35.15 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhh--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 115 EDLGTLGVKELQKLEKQLDKTLSLSRQRKTDL--MRQHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 115 e~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
+.+++|+.++|..+-..|..-...|...+.++ +.+++..+..+.....+.-..+..++.+...
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999887777654 3356666666666666666666666666544
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.79 E-value=23 Score=31.71 Aligned_cols=63 Identities=27% Similarity=0.470 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhh--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 115 EDLGTLGVKELQKLEKQLDKTLSLSRQRKTDL--MRQHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 115 e~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
..++.++..+|..+-..|...-..|..+|..+ +..++..++.+...+.++...+...+.+..+
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999988888777664 3466777777777777777777777776543
No 19
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.59 E-value=17 Score=28.17 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
..+..+|..++++...|.++|+.|..+|+.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466889999999999999999999999874
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.11 E-value=22 Score=29.88 Aligned_cols=77 Identities=10% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHH--HHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 046479 90 ALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSR--QRKTDLMRQHLETLQKKAHDLEEENKQ 167 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR--~rK~ql~~~~i~~LkkKe~~L~eeN~~ 167 (228)
.....+.+++.+++.++....++.++ . -.....+.+.++.+-..|. ...++-+.+++..++.+...|..+|..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~-~----~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT-W----NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665544443322 1 1222233333333222222 222333344555555555555555544
Q ss_pred HHHH
Q 046479 168 LKFK 171 (228)
Q Consensus 168 L~~k 171 (228)
++..
T Consensus 165 ~~~~ 168 (206)
T PRK10884 165 KQRT 168 (206)
T ss_pred HHHH
Confidence 4443
No 21
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=81.17 E-value=12 Score=28.29 Aligned_cols=49 Identities=31% Similarity=0.352 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 122 VKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
++.+.+||+++...+..+..-|. ++..|-..-..|.-||..|+..+.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~-----~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKK-----QLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888776666655443 33444444555666666666666654
No 22
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.13 E-value=16 Score=25.43 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+|++=+.+||..+..++.-| +++.=+|++||.|-..|..+-..++...+
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~re 49 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 47777888888888887776 45566677777776666555554444433
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=81.08 E-value=13 Score=27.93 Aligned_cols=37 Identities=41% Similarity=0.608 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046479 123 KELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k 171 (228)
+.+.+||++|..-+.. |..||.....|.|||..|+.+
T Consensus 8 ~~l~~le~~l~~l~~~------------~~~LK~~~~~l~EEN~~L~~E 44 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEE------------LEELKKQLQELLEENARLRIE 44 (107)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4566677776555544 455555555555555544444
No 24
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=75.45 E-value=47 Score=27.71 Aligned_cols=75 Identities=28% Similarity=0.364 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 046479 89 EALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQL 168 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L 168 (228)
+.+..|..+|+..++..+.....+. .|+..|..++-..=.- ..+.+.+.+++++|+.-.+.|.|+|+.|
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~---------~e~~~L~~q~~s~Qqa--l~~aK~l~eEledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLA---------EEITDLRKQLKSLQQA--LQKAKALEEELEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888887776666542 3344444444322111 3345566777888888888888888777
Q ss_pred HHHHHH
Q 046479 169 KFKLEE 174 (228)
Q Consensus 169 ~~k~~~ 174 (228)
..+...
T Consensus 87 ~aq~rq 92 (193)
T PF14662_consen 87 LAQARQ 92 (193)
T ss_pred HHHHHH
Confidence 666543
No 25
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=75.08 E-value=32 Score=25.65 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=32.2
Q ss_pred HHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 128 LEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 128 LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
++...+.++..+..|+..+ ...|..|.++...|.+.-..+..++.+.
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677776665444 7777888888877777777777776553
No 26
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.86 E-value=23 Score=28.44 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQR 142 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~r 142 (228)
.++.+||...-.+|+.-+..+.+|
T Consensus 108 ~~t~~el~~~i~~l~~e~~~l~~k 131 (169)
T PF07106_consen 108 EPTNEELREEIEELEEEIEELEEK 131 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444444444444333
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=72.76 E-value=24 Score=26.53 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
+..|-..-..|.-||..|+..+.+...
T Consensus 31 ~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 31 LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555567888999999999887643
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.25 E-value=30 Score=29.14 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhh
Q 046479 96 LRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTL 136 (228)
Q Consensus 96 ~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL 136 (228)
..++.++..+++....+. .+|.++.++++...
T Consensus 89 p~~~~rlp~le~el~~l~---------~~l~~~~~~~~~~~ 120 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLT---------DKLNNIDNTWNQRT 120 (206)
T ss_pred ccHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHH
Confidence 456677777776555443 44555555544333
No 29
>PRK09343 prefoldin subunit beta; Provisional
Probab=69.63 E-value=48 Score=25.31 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=31.3
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 131 QLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 131 qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
..+.+...+..|+. .+...|..|.+++..|.+.-..+..++.+.-
T Consensus 68 d~~e~~~~l~~r~E-~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 68 DKTKVEKELKERKE-LLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566655543 4457788888888888888888888777653
No 30
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.58 E-value=83 Score=30.86 Aligned_cols=85 Identities=26% Similarity=0.347 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHH-----HHHhhhHHHHHHHHHHHHHhHHHH
Q 046479 90 ALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSR-----QRKTDLMRQHLETLQKKAHDLEEE 164 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR-----~rK~ql~~~~i~~LkkKe~~L~ee 164 (228)
....++.++..+++.|+..+++|..+ +..+ =+++..|+..|+..-..++ .|+.+.+...|..|.++...-...
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~-~ee~-k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRE-LEEL-KREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777766665431 0000 0566677777777766665 445566778888888877776667
Q ss_pred HHHHHHHHHHHH
Q 046479 165 NKQLKFKLEEAI 176 (228)
Q Consensus 165 N~~L~~k~~~~~ 176 (228)
-..|..++....
T Consensus 497 ve~L~~~l~~l~ 508 (652)
T COG2433 497 VEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 31
>PRK04654 sec-independent translocase; Provisional
Probab=67.65 E-value=1.4 Score=37.18 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=23.9
Q ss_pred hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479 34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
||-|.. =||||||+| .||.++.- .+-+.+-++++.
T Consensus 8 ELLlI~--VVALlV~GP-erLPe~aR--tlGk~irk~R~~ 42 (214)
T PRK04654 8 ELTLIA--VVALVVLGP-ERLPKAAR--FAGLWVRRARMQ 42 (214)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHHH--HHHHHHHHHHHH
Confidence 444443 489999998 67777765 466777777654
No 32
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=67.05 E-value=25 Score=26.59 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHH
Q 046479 146 LMRQHLETLQKKAHDLEEENKQLKF 170 (228)
Q Consensus 146 l~~~~i~~LkkKe~~L~eeN~~L~~ 170 (228)
.+.++|.+|-.+...|.+||..|+.
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666666666665544
No 33
>PRK11637 AmiB activator; Provisional
Probab=66.20 E-value=1.1e+02 Score=28.39 Aligned_cols=76 Identities=12% Similarity=0.202 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHHhh--hHHHHHHHHHHHHHhHHHHHH
Q 046479 89 EALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTD--LMRQHLETLQKKAHDLEEENK 166 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK~q--l~~~~i~~LkkKe~~L~eeN~ 166 (228)
+.+..++..++.++..++...+. ...+|..|+.+|...-..|+....+ .+..+|..+++....++++-.
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~---------~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRAS---------LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666655555554 2355666777776666666554332 233445555555444444444
Q ss_pred HHHHHHH
Q 046479 167 QLKFKLE 173 (228)
Q Consensus 167 ~L~~k~~ 173 (228)
.++..+.
T Consensus 121 ~~~~~l~ 127 (428)
T PRK11637 121 AQERLLA 127 (428)
T ss_pred HHHHHHH
Confidence 4444443
No 34
>PRK01919 tatB sec-independent translocase; Provisional
Probab=66.09 E-value=4.6 Score=32.88 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=21.8
Q ss_pred chhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 42 EVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 42 eValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
=||||||+| .||++..- .+-..+-+++++.
T Consensus 14 VVALiV~GP-ekLP~~aR--tlGk~i~k~Rr~~ 43 (169)
T PRK01919 14 VVALVVIGP-ERLPRVAR--TAGALFGRAQRYI 43 (169)
T ss_pred HHHHheeCc-hHhHHHHH--HHHHHHHHHHHHH
Confidence 389999999 67777664 4667777777653
No 35
>smart00338 BRLZ basic region leucin zipper.
Probab=65.86 E-value=37 Score=22.64 Aligned_cols=37 Identities=38% Similarity=0.528 Sum_probs=26.2
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 136 LSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 136 L~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
-..-|.+|. ..+..|..+...|..+|..|..++....
T Consensus 17 A~~~R~rKk----~~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 17 ARRSRERKK----AEIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555553 4577888888888888888888877654
No 36
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=65.80 E-value=33 Score=22.09 Aligned_cols=38 Identities=39% Similarity=0.522 Sum_probs=27.5
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 135 TLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 135 sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
|-.+-|.+|. ..+.+|......|..+|..|..++....
T Consensus 15 AA~r~R~rkk----~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 15 AARRSRQRKK----QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455553 5567888899999999999988887653
No 37
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=64.10 E-value=40 Score=22.42 Aligned_cols=36 Identities=47% Similarity=0.606 Sum_probs=24.7
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 136 LSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 136 L~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
-...|.||. ..+.+|+.+...|..+|..|...+...
T Consensus 17 Ar~~R~RKk----~~~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 17 ARRSRQRKK----QYIEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566664 456778888888888888887776654
No 38
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=63.27 E-value=66 Score=30.31 Aligned_cols=46 Identities=9% Similarity=0.262 Sum_probs=31.5
Q ss_pred hhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 23 KRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 23 KRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
.--++|+|+ ..|.+-- -+-+++|+++|++..|.+ +.+||+.|-.+.
T Consensus 282 ~~~~~L~k~-~~L~~~~--~~Nm~~~d~~g~~~~~~~---~~~Il~~f~~~R 327 (439)
T PHA02592 282 ATHEKIMKD-FGLIERV--SQNITVINENGKLKVYEN---AEDLIRDFVEIR 327 (439)
T ss_pred HHHHHHHHh-cCchhee--eeeEEEEecCCeeeecCC---HHHHHHHHHHHH
Confidence 344577755 3342221 367888999999999966 788999886653
No 39
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.59 E-value=1.6e+02 Score=30.52 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh------cCCCCCCCCHHHHHHHHHH---HHHhhHHHHH
Q 046479 89 EALFREILRLRALRESLERSQRHF------LGEDLGTLGVKELQKLEKQ---LDKTLSLSRQ 141 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r~l------~Ge~L~~LS~~EL~~LE~q---Le~sL~~IR~ 141 (228)
+.++.|+.-++++++.|+...--+ .|.+--..|.-++.+||+| |-.+|-+.|.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 578889999999998877654322 2666667777777777776 6666666663
No 40
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=62.58 E-value=43 Score=31.58 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=39.8
Q ss_pred hhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 046479 25 RDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRES 104 (228)
Q Consensus 25 r~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~ 104 (228)
.++|+|+ ..|.+--.+ -+++|.++|++..| + +.+||+.|-.+...- -......++.+++++++.
T Consensus 286 ~~~L~k~-t~L~~s~~~--Nm~~~~~~g~p~~~-~---l~~iL~~f~~~R~~~---------~~rR~~~~l~k~~~rl~i 349 (445)
T cd00187 286 LNGLYKV-TKLQTTFGI--NMVAFDPNGRPKKL-N---LKEILQEFLDHRLEV---------YTRRKEYELGKAEARLHI 349 (445)
T ss_pred HHHHHHh-cCCceeeee--eEEEEecCCeeEEe-C---HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 3466644 333222222 67888899999999 5 788999887654211 112344555566666655
Q ss_pred HHHH
Q 046479 105 LERS 108 (228)
Q Consensus 105 Lq~~ 108 (228)
++..
T Consensus 350 l~g~ 353 (445)
T cd00187 350 LEGL 353 (445)
T ss_pred HHhH
Confidence 5543
No 41
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.22 E-value=46 Score=25.22 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
..+.+++..||.....|.|||..|+.+-.-.
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999998875443
No 42
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.87 E-value=49 Score=22.66 Aligned_cols=46 Identities=28% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 124 ELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
||+.||..++.-+.....- ..+-..|+..+..+..|+..|..|.+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L-----~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERL-----KSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred CHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888877766433 334445555555555555555555543
No 43
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=61.67 E-value=15 Score=27.81 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=29.7
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 131 QLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 131 qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
.++.++.-|+..-.--..++++-|+.+.+.|.+.|..|+.+-.
T Consensus 49 KIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~ 91 (123)
T KOG4797|consen 49 KIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENS 91 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443322223358999999999999999999988643
No 44
>PF14645 Chibby: Chibby family
Probab=61.63 E-value=14 Score=28.27 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
.....++++.+.|.|||+.|+-|++
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888899999999988875
No 45
>smart00030 CLb CLUSTERIN Beta chain.
Probab=61.18 E-value=22 Score=29.84 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHh---------hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRKT---------DLMRQHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~---------ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
+|..+|..-=..+..+++.||..|..-|+ +-|+..+++.+++-......-+....+|.+.+.
T Consensus 8 ~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~ 78 (206)
T smart00030 8 ELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQG 78 (206)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666788889999988876663 345556666665544444444455566665543
No 46
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=59.92 E-value=44 Score=27.02 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHhhHHHHHH---HhhhHHHHHHHHHHHHHhHHH
Q 046479 121 GVKELQKLEKQLDKTLSLSRQR---KTDLMRQHLETLQKKAHDLEE 163 (228)
Q Consensus 121 S~~EL~~LE~qLe~sL~~IR~r---K~ql~~~~i~~LkkKe~~L~e 163 (228)
+..||..|-++++.+-.-+|++ |-.++.+||..||+.-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998888865 555667777777776665555
No 47
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=57.98 E-value=64 Score=28.91 Aligned_cols=51 Identities=20% Similarity=0.416 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhHHHHHHHhh--hHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 125 LQKLEKQLDKTLSLSRQRKTD--LMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 125 L~~LE~qLe~sL~~IR~rK~q--l~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+..|...|............+ -+..+|.+|++|.+.+.-+|..|...+.+.
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344445555444444444433 345788999999999999999998887764
No 48
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.68 E-value=64 Score=27.41 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHh--hhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKT--DLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~--ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
....|+..|+..++..-+......+ .-+..|.+.+++.-..|.|+|..|+.+++
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3456777777777766655544333 34567777777777888888888888775
No 49
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.35 E-value=53 Score=22.84 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=26.5
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 141 QRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 141 ~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
..|.+-..+.|..|+.+...|.++|..|.....+.
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34566668888888888888888888887665543
No 50
>PRK11637 AmiB activator; Provisional
Probab=56.56 E-value=1.7e+02 Score=27.13 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 046479 92 FREILRLRALRESLER 107 (228)
Q Consensus 92 ~~E~~kLk~kie~Lq~ 107 (228)
..++..++.+++.++.
T Consensus 46 ~~~l~~l~~qi~~~~~ 61 (428)
T PRK11637 46 RDQLKSIQQDIAAKEK 61 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 51
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=56.44 E-value=4 Score=26.67 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=22.8
Q ss_pred chhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 42 EVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 42 eValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
=||+|||+| +|+++++. ++-+.+..|++..
T Consensus 11 vvalllfGp-~kLP~~~r--~lG~~ir~fk~~~ 40 (53)
T PF02416_consen 11 VVALLLFGP-KKLPELAR--SLGKAIREFKKAI 40 (53)
T ss_dssp HHHHHHS-T-TTHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHhCc-hHHHHHHH--HHHHHHHHHHHHH
Confidence 478999999 78998876 4777788887754
No 52
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=56.32 E-value=11 Score=25.16 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 148 RQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 148 ~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
.++++.||.+...|.+.|..|..+-.-.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999998876544
No 53
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.03 E-value=1.1e+02 Score=24.82 Aligned_cols=60 Identities=22% Similarity=0.394 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhHHHHH--HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 117 LGTLGVKELQKLEKQLDKTLSLSRQ--RKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 117 L~~LS~~EL~~LE~qLe~sL~~IR~--rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
.+.+++++...+-+.+......... .-++-+.+++..|+.+...|..+|..|.+++....
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999998888888765333322 12345678888888888888888888888766543
No 54
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.82 E-value=1.2e+02 Score=26.42 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=28.5
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 141 QRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 141 ~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
.+.++.|..+|...++-+..+.++...|+..++...
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888888888877664
No 55
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=55.54 E-value=2e+02 Score=28.01 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
.+..++..+...|.++...|..+.
T Consensus 213 ~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 213 EQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 56
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.20 E-value=90 Score=25.46 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhHHHHH----------HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 122 VKELQKLEKQLDKTLSLSRQ----------RKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~----------rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
+.+|..++..++..-+...+ -+..-..+++++|+++......+...|+++.+...
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555432 23445678888888888888888888888876543
No 57
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=54.76 E-value=1.6e+02 Score=26.50 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=33.2
Q ss_pred HHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 132 LDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 132 Le~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
|..-|...|.+- +-+..++..|+++...++..++.|+.++....
T Consensus 70 La~lL~~sre~N-k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 70 LAQLLSESREQN-KKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 333445555553 44578899999999999999999999988753
No 58
>PRK13824 replication initiation protein RepC; Provisional
Probab=54.46 E-value=23 Score=32.92 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=61.2
Q ss_pred hhcccCcchhheee--ecCCccccccccc---------chhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 046479 35 LSLLCDAEVALIIF--SSHGMLFEFGSNF---------GMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRE 103 (228)
Q Consensus 35 LSvLCdaeValIvf--S~~Gkl~ef~s~~---------s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie 103 (228)
|+.| +|++||+. ||+||=|-+-... +...++.||....... ...+.-..+...|+.++.
T Consensus 104 la~L--veaGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~A--------~~~~ae~~~~r~lr~~it 173 (404)
T PRK13824 104 LAAL--VEAGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEALA--------EQVAAERKALRRLRERLT 173 (404)
T ss_pred HHHH--HHCCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 4455 45668888 7999987643211 3667888887764321 122344667778888888
Q ss_pred HHHHHhhhhcCCCCC-CCCHHHHHHHHHHHHHhhHHHHHH
Q 046479 104 SLERSQRHFLGEDLG-TLGVKELQKLEKQLDKTLSLSRQR 142 (228)
Q Consensus 104 ~Lq~~~r~l~Ge~L~-~LS~~EL~~LE~qLe~sL~~IR~r 142 (228)
.+.+..+.+.-...+ +++ -+...++..++..+..++.+
T Consensus 174 ~~rRdi~~li~~a~~~~~~-~~w~~~~~~~~~i~~~l~R~ 212 (404)
T PRK13824 174 LCRRDIAKLIEAAIEEGVP-GDWEGVEQRFRAIVARLPRR 212 (404)
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHcCCC
Confidence 888888877621111 111 14777888888888877744
No 59
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=54.22 E-value=1.1e+02 Score=27.82 Aligned_cols=91 Identities=24% Similarity=0.327 Sum_probs=45.0
Q ss_pred chhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHH
Q 046479 62 GMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQ 141 (228)
Q Consensus 62 s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~ 141 (228)
.++.+.+||......-... +.-....++.++.++...|+.... .+.++..++.+|+.+-.-+..
T Consensus 8 kl~~~~~r~~el~~~L~~p------~v~~d~~~~~~lske~a~l~~iv~----------~~~~~~~~~~~l~~a~~~l~~ 71 (363)
T COG0216 8 KLESLLERYEELEALLSDP------EVISDPDEYRKLSKEYAELEPIVE----------KYREYKKAQEDLEDAKEMLAE 71 (363)
T ss_pred HHHHHHHHHHHHHHHhcCc------ccccCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc
Confidence 4788999998876533222 111122333333333333322211 233444444444443333332
Q ss_pred HHh----hhHHHHHHHHHHHHHhHHHHHHHH
Q 046479 142 RKT----DLMRQHLETLQKKAHDLEEENKQL 168 (228)
Q Consensus 142 rK~----ql~~~~i~~LkkKe~~L~eeN~~L 168 (228)
.++ .+..++|..++.+...|.++-+.|
T Consensus 72 ~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 72 EKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 355677777777777777776655
No 60
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=53.65 E-value=43 Score=24.68 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=27.8
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 129 EKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 129 E~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+...+.+...+..++. .+...|..+.++...+..+-..|+.++.+.
T Consensus 58 ~~~~~ea~~~Le~~~e-~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 58 KQEKEEARTELKERLE-TIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred hccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544443 335666777777777777777777776654
No 61
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.07 E-value=83 Score=22.58 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 148 RQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 148 ~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
...|..|+++...+.++-..+..++.
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666655544
No 62
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=52.51 E-value=1.8e+02 Score=27.75 Aligned_cols=53 Identities=28% Similarity=0.394 Sum_probs=34.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhHHHH---HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 115 EDLGTLGVKELQKLEKQLDKTLSLSR---QRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 115 e~L~~LS~~EL~~LE~qLe~sL~~IR---~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
-+|+.||.+||+ +|+|.+++.+= .-|.|| +++||.....|+.--+.|.....+
T Consensus 197 l~i~~lsteelr---~qVD~A~~q~VnP~k~KeQL----V~QLkTQItDLErFInFlQ~e~~e 252 (621)
T KOG3759|consen 197 LDIDKLSTEELR---RQVDDALKQLVNPFKEKEQL----VDQLKTQITDLERFINFLQDEVGE 252 (621)
T ss_pred CCcccccHHHHH---HHHHHHHHHHhChHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 358899998877 47888888762 345554 355666666666666666555444
No 63
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=52.38 E-value=65 Score=26.58 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=7.4
Q ss_pred hhHHHHHHHhhc
Q 046479 63 MAKILERYRQYC 74 (228)
Q Consensus 63 ~~~ileRY~~~~ 74 (228)
+..+|++|....
T Consensus 93 ~~~~l~~y~~l~ 104 (189)
T PF10211_consen 93 YRMTLDAYQTLY 104 (189)
T ss_pred HHHHHHHHHHHH
Confidence 566677776554
No 64
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=52.38 E-value=18 Score=31.99 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=33.1
Q ss_pred ceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHh
Q 046479 7 VLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQ 72 (228)
Q Consensus 7 ~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~ 72 (228)
.+..|.|.+.|..+=|+ .||..|.+ ++| .|-++|.|++|++.|.+
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 45678888888766332 57887765 333 57788999999999876
No 65
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=52.36 E-value=35 Score=32.08 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHH---------hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRK---------TDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK---------~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
+|..+|..--..+..+++.||..|..-| .+-++..++..+++-......-+....+|++.+.
T Consensus 2 ~Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~ 72 (436)
T PF01093_consen 2 NLKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEE 72 (436)
T ss_pred chHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677788888888886555 3455666666666555555555566666766543
No 66
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.97 E-value=36 Score=23.21 Aligned_cols=30 Identities=33% Similarity=0.529 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 146 LMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 146 l~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
-+..++..|+++...+..+|..|..++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888889999999998888765
No 67
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=51.43 E-value=82 Score=23.34 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
++|++|+..+-......-..+.. -..++.+++..+..+...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPE-RLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888888875544322212222 235667777777777777776666666554
No 68
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=51.35 E-value=49 Score=24.45 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
...+++.+++ |++.-......+++.|..+...+..+|..|..++.+..
T Consensus 60 ~~~~l~P~~~-------------i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 60 WRHSLTPEED-------------IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred CCCCCChHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777665 33333444567889999999999999999999988753
No 69
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=50.97 E-value=96 Score=23.46 Aligned_cols=40 Identities=33% Similarity=0.433 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 122 VKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
++.+.+||++|-.-+.. ++.||+....|.|||..|+-..+
T Consensus 7 Fd~v~~le~~l~~l~~e------------l~~lK~~l~~lvEEN~~L~lENe 46 (114)
T COG4467 7 FDQVDNLEEQLGVLLAE------------LGGLKQHLGSLVEENTALRLENE 46 (114)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhHHHHhhHH
Confidence 35667778777665554 45666666666666666655443
No 70
>PHA02109 hypothetical protein
Probab=50.55 E-value=56 Score=26.95 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=46.1
Q ss_pred hHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC--HHHHHHHHHHHHHhhHHHHH
Q 046479 64 AKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLG--VKELQKLEKQLDKTLSLSRQ 141 (228)
Q Consensus 64 ~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS--~~EL~~LE~qLe~sL~~IR~ 141 (228)
-.||.||++....+... .......+.. ++-.-.++++.++ +...|+.|++|+ ++++-.|+..|
T Consensus 138 L~VL~R~R~~~~~E~k~-r~~~~KP~~v--~~~AsTE~ID~~~---~~~t~~~L~~~~~~L~~I~~L~~ki--------- 202 (233)
T PHA02109 138 LAVLTRTRRIETIEKKT-RVRPAKPKAV--EIHASTERIDQVE---RSHTGENLEGLTDKLKQISELTIKL--------- 202 (233)
T ss_pred chhhhhhhhhhhhhhhc-CCCCCCccce--eccccHHHHHHHH---hccchhhhhhhhHHHHhhHHHHHHH---------
Confidence 46899998876554433 2222222111 1111233444443 445688888776 66666665544
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHH
Q 046479 142 RKTDLMRQHLETLQKKAHDLEEEN 165 (228)
Q Consensus 142 rK~ql~~~~i~~LkkKe~~L~eeN 165 (228)
..+.++..++|-|...+..+-
T Consensus 203 ---~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 203 ---EALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777776665543
No 71
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=50.18 E-value=63 Score=21.13 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQL 168 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L 168 (228)
++|++|+.++-.-.+..-....... +++.++++++.++...|..--..|
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888887633222222222222 555566666666655555444433
No 72
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=49.46 E-value=1.5e+02 Score=24.58 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
..+.+++.....|+++...|..++.+..
T Consensus 164 kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 164 KKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566667777777777766654
No 73
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=49.07 E-value=1.6e+02 Score=24.63 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=59.6
Q ss_pred chhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH-hhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHH
Q 046479 62 GMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERS-QRHFLGEDLGTLGVKELQKLEKQLDKTLSLSR 140 (228)
Q Consensus 62 s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~-~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR 140 (228)
....++|.|-..+... .+ ...|.+.+.+++.-.+. ...+ ++|...+|.+.. .|...-
T Consensus 7 ~~~~~~D~Y~~~~~~~--------~E----h~~f~~Ak~rLe~~hr~r~~~V---------mkeW~eaE~~~~-~l~~~D 64 (193)
T PF12925_consen 7 PTSDAVDPYFEHPDPE--------NE----HQRFKEAKERLEEKHRERMTKV---------MKEWSEAEERYK-ELPKAD 64 (193)
T ss_dssp ----HHHHHHHSSTTS--------TH----HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHTTT-TSHHHH
T ss_pred CCCCCCChHhhcCCCC--------ch----HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH-hchhhh
Confidence 4556779998876432 12 23344444444443332 2233 478888888887 567777
Q ss_pred HHHhhhHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 141 QRKTDLMRQH-LETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 141 ~rK~ql~~~~-i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
-.+.+.+... +...|++...|.+|+..-+++|.+.-
T Consensus 65 Pk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H 101 (193)
T PF12925_consen 65 PKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETH 101 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776644 56788999999999999999988653
No 74
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=48.92 E-value=6.9 Score=26.73 Aligned_cols=39 Identities=18% Similarity=0.422 Sum_probs=29.6
Q ss_pred hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCC
Q 046479 34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTS 77 (228)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~ 77 (228)
||-|++= ||||||+|. ||.+... ++-+.+-.|++.....
T Consensus 8 ElliI~v--IalllfGp~-kLP~l~r--~lGk~ir~fkk~~~~~ 46 (64)
T PRK14860 8 ELIVILV--IALVVFGPA-KLPQLGQ--ALGGAIRNFKKASNEE 46 (64)
T ss_pred HHHHHHH--HHHhhcCch-HHHHHHH--HHHHHHHHHHHHcccc
Confidence 5655542 899999996 9998876 5888888888876543
No 75
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=48.77 E-value=1.9e+02 Score=30.30 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046479 90 ALFREILRLRALRESLERS 108 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~ 108 (228)
.+..++.+++.++..+...
T Consensus 478 Q~~~et~el~~~iknlnk~ 496 (1195)
T KOG4643|consen 478 QLEAETEELLNQIKNLNKS 496 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555443
No 76
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=48.67 E-value=34 Score=27.83 Aligned_cols=43 Identities=26% Similarity=0.495 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhHHHH---HHHHHHHHHhHHHHHHHHHHHH
Q 046479 125 LQKLEKQLDKTLSLSRQRKTDLMRQH---LETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 125 L~~LE~qLe~sL~~IR~rK~ql~~~~---i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
|.++|..|..++.+- -+|..+ -+.|+...+.|.+|-..|+.++
T Consensus 2 LeD~EsklN~AIERn-----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----ALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777653 333333 3445555556666666666655
No 77
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.47 E-value=51 Score=24.58 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+..++..++++...+.++|..|+.++...
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777777777777776654
No 78
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=48.11 E-value=9.2 Score=35.37 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=51.1
Q ss_pred eeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479 8 LERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 8 ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
|+++-++..-..||.+|+.| ||+++||+.+-+.||-...-...|+++.-+.+.-.-|+..
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q~~ 77 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQKF 77 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHhhh
Confidence 78888888889999999999 9999999999999998877777888866677777766665
No 79
>smart00340 HALZ homeobox associated leucin zipper.
Probab=47.61 E-value=53 Score=20.52 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=21.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
-+-||+=-..|.++|+.|++++.+..
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777899999999999999875
No 80
>PRK00182 tatB sec-independent translocase; Provisional
Probab=47.60 E-value=8.7 Score=31.06 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=27.2
Q ss_pred hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhcc
Q 046479 34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCY 75 (228)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~ 75 (228)
||-|++ =||||||+| .||.++.. .+.+.+..|++...
T Consensus 9 EllvIl--vIaLlVfGP-erLP~~~r--~lg~~ir~~R~~~~ 45 (160)
T PRK00182 9 EILLLL--IVGLIVIGP-ERLPRLIE--DVRAALLAARTAIN 45 (160)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHHH--HHHHHHHHHHHHHH
Confidence 555553 489999998 78888875 47777878877653
No 81
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.62 E-value=1.8e+02 Score=27.72 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 126 QKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 126 ~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
..+.++++.++...| +-+.++.++|+.....++..-..|..++..
T Consensus 97 ~~id~~i~~av~~~~----~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 97 QSIDQQIQQAVQSET----QELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred hhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666654 334566777777777777777777777754
No 82
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=45.05 E-value=8.7 Score=24.48 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=26.5
Q ss_pred hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhcc
Q 046479 34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCY 75 (228)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~ 75 (228)
||-|+. =||++||.| +|+++... ++-+.+..|++...
T Consensus 6 ElliI~--vi~llvfGp-~kLP~~~r--~lG~~i~~fk~~~~ 42 (47)
T TIGR01411 6 EWLIIL--VVILLLFGA-KKLPELGR--DLGKAIKEFKKALK 42 (47)
T ss_pred HHHHHH--HHHHHhcCc-hHhHHHHH--HHHHHHHHHHHHhh
Confidence 554543 279999977 78888876 47777888877653
No 83
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.79 E-value=2.7e+02 Score=26.51 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 118 GTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 118 ~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
+..++.++.++-..+...+..++.+.. ++..+.+.+.++-..|+.++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDR--------EAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888888888888888876653 4444444444555555555443
No 84
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=44.59 E-value=1.1e+02 Score=21.63 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHH----HHHHHHHHHHH
Q 046479 87 EPEALFREILRLRALRESLERSQRHFLGEDLGTLGVK----ELQKLEKQLDK 134 (228)
Q Consensus 87 e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~----EL~~LE~qLe~ 134 (228)
+...+......|+.++.......+.+-| -+.|++ ++++||.++..
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpg---i~~s~eeq~~~i~~Le~~i~~ 70 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPG---IDRSVEEQEEEIEELEEQIRK 70 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCC---ccCCHHHHHHHHHHHHHHHHH
Confidence 3467778888999999888887777766 233443 34445555433
No 85
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=44.36 E-value=1.5e+02 Score=23.11 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 121 S~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
.+.|++.+-.-.|..+++..+.- +.-..+|..|+++...+...|+.|.+++
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~-~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAEL-RAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 47888888888888887764432 2335789999999999999999987753
No 86
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=44.22 E-value=89 Score=23.33 Aligned_cols=55 Identities=9% Similarity=0.096 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
++|++|+..+-...+..-...-..-..++.+++..+.++.+.|+..-+.|...+.
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEA 110 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888877655443211111112345555666666666666665555555443
No 87
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=42.93 E-value=3.4e+02 Score=28.55 Aligned_cols=22 Identities=41% Similarity=0.382 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046479 89 EALFREILRLRALRESLERSQR 110 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r 110 (228)
+.+..+...++.++-.++...+
T Consensus 664 e~le~e~~~l~~~~~~l~~~~~ 685 (1074)
T KOG0250|consen 664 EDLEREASRLQKEILELENQRR 685 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555544333
No 88
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.76 E-value=2.1e+02 Score=24.38 Aligned_cols=8 Identities=0% Similarity=-0.143 Sum_probs=3.7
Q ss_pred ccccccchh
Q 046479 56 EFGSNFGMA 64 (228)
Q Consensus 56 ef~s~~s~~ 64 (228)
-||. .++.
T Consensus 12 ~~C~-~C~~ 19 (302)
T PF10186_consen 12 FYCA-NCVN 19 (302)
T ss_pred eECH-HHHH
Confidence 3565 3444
No 89
>PRK01371 sec-independent translocase; Provisional
Probab=42.64 E-value=27 Score=27.55 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=23.3
Q ss_pred hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479 34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
||-|+ +=||||||+| .||.++.- .+-+.+..|++.
T Consensus 8 EllvI--lvVallvfGP-eKLP~~ar--~lg~~ir~~R~~ 42 (137)
T PRK01371 8 ELVVL--VVLAVLVFGP-DKLPKAAR--DAGRTLRQLREM 42 (137)
T ss_pred HHHHH--HHHHhheeCc-hHHHHHHH--HHHHHHHHHHHH
Confidence 45444 3478999998 68887765 366666666554
No 90
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=41.83 E-value=4e+02 Score=27.18 Aligned_cols=112 Identities=22% Similarity=0.235 Sum_probs=60.0
Q ss_pred ccchhHHHHHHHhhccCCCCCCCCCC--cc----hHHHHHHHHHHHHHHHHHHHHhhhhc------CCCCCCCCHHHHHH
Q 046479 60 NFGMAKILERYRQYCYTSQEPIDINQ--LE----PEALFREILRLRALRESLERSQRHFL------GEDLGTLGVKELQK 127 (228)
Q Consensus 60 ~~s~~~ileRY~~~~~~~~~~~~~~~--~e----~q~l~~E~~kLk~kie~Lq~~~r~l~------Ge~L~~LS~~EL~~ 127 (228)
++.|.++|..-..+...-+.....++ .+ .|-++-|..-|+.++..|....|.-- |-.=-++-+--|+.
T Consensus 355 DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqS 434 (861)
T PF15254_consen 355 DSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQS 434 (861)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHH
Confidence 34566666666655443322211111 11 15677777777777777765554311 11111333444554
Q ss_pred ----HHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 128 ----LEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 128 ----LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
|+.||..+++.. +++...-++|-+-...+.+||+.|.+.+.+..
T Consensus 435 lN~~Lq~ql~es~k~~-----e~lq~kneellk~~e~q~~Enk~~~~~~~ekd 482 (861)
T PF15254_consen 435 LNMSLQNQLQESLKSQ-----ELLQSKNEELLKVIENQKEENKRLRKMFQEKD 482 (861)
T ss_pred HHHHHHHHHHHHHHhH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444 34445556666666777788888877766544
No 91
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.77 E-value=1.2e+02 Score=28.78 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
++|..+..+++.|.+.|.++|..|+.+++..
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777888999999999999999998643
No 92
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=41.42 E-value=1.2e+02 Score=31.71 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=34.2
Q ss_pred HHHHhhHHHHHHHhh-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 131 QLDKTLSLSRQRKTD-LMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 131 qLe~sL~~IR~rK~q-l~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
.|+.-|.+.|+|=.. -+..+|-+|++|...+..++...+.|+++..
T Consensus 282 MLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~ 328 (1195)
T KOG4643|consen 282 MLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELH 328 (1195)
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 466777777777543 3457788888888888888888888887753
No 93
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=41.13 E-value=1.4e+02 Score=24.01 Aligned_cols=27 Identities=48% Similarity=0.704 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 148 RQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 148 ~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
..+..+|..+...|+++|+.|..++..
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455567778888888888888877654
No 94
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=41.09 E-value=46 Score=25.55 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 150 HLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 150 ~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
.+++|..+...|+=||+.|++++...
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 46889999999999999999999765
No 95
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=40.78 E-value=1.4e+02 Score=22.93 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
++|++|+..+-...+..-... ..-..++.+++..+..+...|+..-..|..++..
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQ 111 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999888765443321111 1123566777888888888877777777666654
No 96
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.74 E-value=46 Score=29.76 Aligned_cols=26 Identities=46% Similarity=0.610 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 150 HLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 150 ~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+++.|++|.+.|.++|..|+.+....
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L 186 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQL 186 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999986543
No 97
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.56 E-value=2.6e+02 Score=26.48 Aligned_cols=35 Identities=29% Similarity=0.310 Sum_probs=24.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046479 137 SLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 137 ~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k 171 (228)
+.|=++|-+-+...+..+++..+.+.|+|+.|.+-
T Consensus 377 kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566666777788888888888888877653
No 98
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=40.54 E-value=1.8e+02 Score=22.99 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 046479 124 ELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKF 170 (228)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~ 170 (228)
|.+.|+..-...+.+|+.++.+| +++...+---+.|.+-|+.+..
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~L--qEL~~Q~va~knLv~RN~~~~~ 46 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQL--QELILQQVAFKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 67788888888888888777554 3333333344567777766644
No 99
>PHA03155 hypothetical protein; Provisional
Probab=40.43 E-value=1.6e+02 Score=22.39 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHH
Q 046479 84 NQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRK 143 (228)
Q Consensus 84 ~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK 143 (228)
++...+.+..|+.+|+-++..|.+..++-.+.+=..|+..+=+-+-.+.-.+|...-++|
T Consensus 6 ~~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 6 ACADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568899999999999999988877655555577898888888888888877776665
No 100
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=40.17 E-value=2.1e+02 Score=28.92 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=59.7
Q ss_pred hheeeecCCcccccccccchhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhc---------C
Q 046479 44 ALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFL---------G 114 (228)
Q Consensus 44 alIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~---------G 114 (228)
-+++|+++|++. +. ++.++|+.|-.+...- -......++.+++++++.++-...-+. .
T Consensus 337 n~~~~d~~~~p~-~~---~l~~il~~f~~~R~~~---------~~rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~iir 403 (742)
T PRK05561 337 NMNAIGLDGRPR-VK---GLKEILSEWLDHRREV---------VTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIR 403 (742)
T ss_pred eEEEEccCCEEE-EC---CHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 567787888863 32 4888898887654211 112444555666666665543221110 0
Q ss_pred CCC-------CCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHH
Q 046479 115 EDL-------GTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEE 164 (228)
Q Consensus 115 e~L-------~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~ee 164 (228)
..- ..+.+.| .|.+--|+..|.++..-...-+.+++.+|++....|+.-
T Consensus 404 ~s~~ak~~l~~~f~~~~-~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~i 459 (742)
T PRK05561 404 ESDEPKANLMARFDLSE-IQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAI 459 (742)
T ss_pred cCccHHHHHHHHhCCCH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0011111 356666777777777777777777777777776655554
No 101
>PHA03155 hypothetical protein; Provisional
Probab=39.30 E-value=45 Score=25.40 Aligned_cols=25 Identities=44% Similarity=0.508 Sum_probs=21.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+++|.++...|+=||+.|++++...
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5788889999999999999998653
No 102
>PHA03162 hypothetical protein; Provisional
Probab=39.03 E-value=44 Score=26.10 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 150 HLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 150 ~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
.+++|..+...|+=||+.|++++...
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36788889999999999999998654
No 103
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.92 E-value=4.1e+02 Score=28.56 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHhhHHHH-------HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSR-------QRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR-------~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+.++++|+.--..++..+..++ ..+. -+.++|..|+.++..+.++...+...+.
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e-~~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQ-DQQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777776666666666663 3332 3356777777777666666666665554
No 104
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=38.83 E-value=14 Score=24.10 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=24.7
Q ss_pred hhheeeecCCcccccccccchhHHHHHHHhhccC
Q 046479 43 VALIIFSSHGMLFEFGSNFGMAKILERYRQYCYT 76 (228)
Q Consensus 43 ValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~ 76 (228)
||+|||.| +|+++... ++-+.+..|++....
T Consensus 14 i~llvFGp-~KLP~l~r--~lG~~i~~Fk~~~~~ 44 (51)
T PRK01470 14 IIFVLFGA-GKLPQVMS--DLAKGLKAFKDGMKD 44 (51)
T ss_pred HHHHhcCc-hHhHHHHH--HHHHHHHHHHHHhcc
Confidence 89999998 59999876 477788888876543
No 105
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.83 E-value=3.6e+02 Score=26.60 Aligned_cols=16 Identities=44% Similarity=0.451 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 046479 91 LFREILRLRALRESLE 106 (228)
Q Consensus 91 l~~E~~kLk~kie~Lq 106 (228)
|..++..++.+++.|+
T Consensus 441 L~~~~ee~k~eie~L~ 456 (652)
T COG2433 441 LKRELEELKREIEKLE 456 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333443333
No 106
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=38.62 E-value=1.8e+02 Score=22.32 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCCCHHHHHHHHHHHHHhhHHHHHHHh
Q 046479 88 PEALFREILRLRALRESLERSQRHFLG----EDLGTLGVKELQKLEKQLDKTLSLSRQRKT 144 (228)
Q Consensus 88 ~q~l~~E~~kLk~kie~Lq~~~r~l~G----e~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ 144 (228)
++.+..++.+|+-++..|.+..++-.| .+=..|+..+=+-+-.+.-.+|...-.+|.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KI 65 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKI 65 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998888777 566788998888888888888877766653
No 107
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.53 E-value=3e+02 Score=24.84 Aligned_cols=100 Identities=22% Similarity=0.128 Sum_probs=52.6
Q ss_pred HHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccc--cccchhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHH
Q 046479 20 TFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFG--SNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILR 97 (228)
Q Consensus 20 TFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~--s~~s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~k 97 (228)
++..|..+|-+|-.|+---|+ ..|.+.-++ ...++..+|..++.... ....+...+++.+..
T Consensus 34 qLqer~q~LKkk~~el~~~~~---------~~~d~~~~~~~~~~~La~lL~~sre~Nk-------~L~~Ev~~Lrqkl~E 97 (319)
T PF09789_consen 34 QLQERYQALKKKYRELIQEAA---------GFGDPSIPPEKENKNLAQLLSESREQNK-------KLKEEVEELRQKLNE 97 (319)
T ss_pred HHHHHHHHHHHHHHHhhhhhc---------ccCCccCCcccchhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 566788888888888763332 223333232 22357778887776431 122333466666666
Q ss_pred HHHHHHHHHHHhhhh--cCCCCCCCC-HHHHHHHHHHHHHh
Q 046479 98 LRALRESLERSQRHF--LGEDLGTLG-VKELQKLEKQLDKT 135 (228)
Q Consensus 98 Lk~kie~Lq~~~r~l--~Ge~L~~LS-~~EL~~LE~qLe~s 135 (228)
++..+..|+..+... .++.++... +.|=..|-.+||.+
T Consensus 98 ~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~ 138 (319)
T PF09789_consen 98 AQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKL 138 (319)
T ss_pred HhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHH
Confidence 666666665543322 222333222 25555555555443
No 108
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=38.42 E-value=1e+02 Score=24.13 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
++|++|+..+-..+...-...-..-..++.+++..+..+...|+..-..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~~ 111 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCIG 111 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999887765543211111222345667777777777777777777665553
No 109
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=38.31 E-value=23 Score=25.20 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=25.1
Q ss_pred chhheeeecCC--cccccccccchhHHHHHHHhh
Q 046479 42 EVALIIFSSHG--MLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 42 eValIvfS~~G--kl~ef~s~~s~~~ileRY~~~ 73 (228)
.+-++|+|++| ||+.++.+.....++.+|...
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 35678999887 677777766899999999763
No 110
>PRK01770 sec-independent translocase; Provisional
Probab=38.30 E-value=34 Score=28.02 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=24.7
Q ss_pred hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
||-|++ =||||||+| .||.++.- .+-..+-++++..
T Consensus 8 ELllI~--vVaLlV~GP-erLP~~~r--~lg~~i~~~R~~~ 43 (171)
T PRK01770 8 ELLLVF--VIGLVVLGP-QRLPVAVK--TVAGWIRALRSLA 43 (171)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHHH--HHHHHHHHHHHHH
Confidence 555543 489999998 57777654 4667777777754
No 111
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=38.16 E-value=1.3e+02 Score=22.13 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
++|+.|+..+-...+. ..-..++.++++.+.++...|+..-..|..++
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888877555432 34445666667777777766666666665544
No 112
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=38.00 E-value=1.5e+02 Score=29.42 Aligned_cols=53 Identities=23% Similarity=0.346 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhh---HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 123 KELQKLEKQLDKTLSLSRQRKTDL---MRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql---~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
++|..|+++-+.-+...+.+++.+ ..++++.||.-.+.|++|++.|.-+....
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777666554 35788889999999999999998776543
No 113
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.52 E-value=1.1e+02 Score=21.69 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 142 RKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 142 rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
.|.|-..|.|.-||.....|.+.|..|..+...
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667899999999999999999999887654
No 114
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.25 E-value=97 Score=21.47 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
..+..++..++++...++++|..|+.++...
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999999999999999988764
No 115
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.77 E-value=1.8e+02 Score=23.58 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 046479 89 EALFREILRLRALRESLERSQRHF 112 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r~l 112 (228)
+.+..+..+|+.+++.|+.....+
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777776665544
No 116
>PRK03100 sec-independent translocase; Provisional
Probab=36.17 E-value=17 Score=28.56 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=24.8
Q ss_pred hhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 33 YELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 33 ~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
.||-|+ +=||||||+| .||.++.. .+-+.+-.+++..
T Consensus 8 ~EllvI--~vVaLvv~GP-krLP~~~r--~lG~~vr~~R~~~ 44 (136)
T PRK03100 8 GEMLVL--VVAGLVILGP-ERLPGAIR--WTARALRQARDYA 44 (136)
T ss_pred HHHHHH--HHHHHhhcCc-hHHHHHHH--HHHHHHHHHHHHH
Confidence 355555 3589999998 67777765 4666666666543
No 117
>smart00338 BRLZ basic region leucin zipper.
Probab=36.15 E-value=1.1e+02 Score=20.25 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
+.+..+...|+.+...|..++..|+..+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677778888888888888877654
No 118
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=35.67 E-value=3.8e+02 Score=29.21 Aligned_cols=27 Identities=15% Similarity=0.470 Sum_probs=21.4
Q ss_pred hheeeecCCcccccccccchhHHHHHHHhh
Q 046479 44 ALIIFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 44 alIvfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
-+++|.++|++..|.+ +..||+.|-.+
T Consensus 962 Nm~~~d~~g~i~~~~~---~~~Il~~f~~~ 988 (1388)
T PTZ00108 962 NMVLFDENGKIKKYSD---ALDILKEFYLV 988 (1388)
T ss_pred eEEEEeCCCCcceeCC---HHHHHHHHHHH
Confidence 4678999999999977 67888877553
No 119
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=35.54 E-value=24 Score=27.82 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=26.0
Q ss_pred CcchhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 40 DAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 40 daeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
+..++-||+ ++|++.+|..+-.+.+|+..|=.+.
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~pv~a~evm~~~P~h~ 47 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRPVTAAEVMLENPGHF 47 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCCcCHHHHHHHCCCCE
Confidence 445555555 8999999988778999999987663
No 120
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=35.13 E-value=13 Score=26.84 Aligned_cols=38 Identities=8% Similarity=0.318 Sum_probs=28.4
Q ss_pred hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccC
Q 046479 34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYT 76 (228)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~ 76 (228)
||-|+. =|+||||+|+ ||.++.. ++-+.+..|++....
T Consensus 7 ElliI~--vI~lllFGp~-KLP~~~r--~lGk~ir~FK~~~~~ 44 (84)
T PRK00191 7 EIGIIV--LLIIVLFGAK-KLPDAAR--SIGRSMRIFKSEVKE 44 (84)
T ss_pred HHHHHH--HHHHHHhcch-HHHHHHH--HHHHHHHHHHHHHhc
Confidence 555554 4799999996 9999876 588888888875443
No 121
>PHA01750 hypothetical protein
Probab=34.91 E-value=1.5e+02 Score=20.37 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 046479 150 HLETLQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 150 ~i~~LkkKe~~L~eeN~~L~~k 171 (228)
+|++++.|...|+++-..++++
T Consensus 50 ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 50 EIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 3444444444444444444444
No 122
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=34.84 E-value=1.9e+02 Score=22.01 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
++|++|+..+-...+..-... ..-.+++.++++.+.++...|++.-..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02047 57 DMSLAEIRQLLRYQDKPEKSC-SDVNALLDEHISHVRARIIKLQALIEQLVDLRG 110 (127)
T ss_pred CCCHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888654332221111 112346777888888888888877777766543
No 123
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.70 E-value=3e+02 Score=23.74 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQR 142 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~r 142 (228)
-+.+++..|...++.+-.++++-
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888887777776666544
No 124
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=34.68 E-value=2e+02 Score=21.77 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
++|++|+..+-...+..-..... -..++.+++..+.++...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 109 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRASAD-VKALALEHIAELERKIAELQAMRRTLQQLA 109 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888865543322111111 125667777777777777766666665544
No 125
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=34.44 E-value=1.9e+02 Score=22.37 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
++|++|+.++-...+..=..... -.+++.+++.++..+...|+..-..|...+.
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHSAD-VKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899988876544321111111 1245667777777777777777777766543
No 126
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=34.14 E-value=1.1e+02 Score=22.55 Aligned_cols=32 Identities=34% Similarity=0.497 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
|+..++.+-|+++...+.++|..|..++....
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999888764
No 127
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=33.77 E-value=25 Score=26.55 Aligned_cols=27 Identities=30% Similarity=0.228 Sum_probs=21.3
Q ss_pred hhhhhcccCcchhheeeecCCccccccc
Q 046479 32 AYELSLLCDAEVALIIFSSHGMLFEFGS 59 (228)
Q Consensus 32 A~ELSvLCdaeValIvfS~~Gkl~ef~s 59 (228)
-.+|-.|-+|- |+..||++|++.+|-.
T Consensus 3 l~~Lm~lpGv~-AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGVV-AAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCeE-EEEEECCCCeEEeeec
Confidence 35677777775 6688999999999866
No 128
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=33.71 E-value=3.6e+02 Score=26.61 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=78.0
Q ss_pred cchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccc--c-----ccccchhHHHHHHHhhccCCCCCCCCCCcch
Q 046479 16 NRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFE--F-----GSNFGMAKILERYRQYCYTSQEPIDINQLEP 88 (228)
Q Consensus 16 ~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~e--f-----~s~~s~~~ileRY~~~~~~~~~~~~~~~~e~ 88 (228)
+||.+--.+|.+|.-+-.|+=-..+.+ -+=++-|-=|.|. + -|.......++=|+....++-.. ......
T Consensus 33 ~~Q~~S~~srk~L~e~trefkk~~pe~-k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPDP~--pll~sa 109 (629)
T KOG0963|consen 33 QRQDESEISRKRLAEETREFKKNTPED-KLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPDPV--PLLASA 109 (629)
T ss_pred hhhhhHHHHHHHHHHhHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCc--hHHHHH
Confidence 466677777777766666654443321 1111112112221 1 01112344556666665443211 000001
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC-HHHHHHHHHHHHHhhH----HHHHHHhhhHHHHHHHHHH
Q 046479 89 E-------ALFREILRLRALRESLERSQRHFLGEDLGTLG-VKELQKLEKQLDKTLS----LSRQRKTDLMRQHLETLQK 156 (228)
Q Consensus 89 q-------~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS-~~EL~~LE~qLe~sL~----~IR~rK~ql~~~~i~~Lkk 156 (228)
. .-..|..+|+..++.+......+.+.++.-.. .+.|..++..++...+ .+-....+-..+....|+.
T Consensus 110 ~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~ 189 (629)
T KOG0963|consen 110 AELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKD 189 (629)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12234555666666655554444433322122 2334455555555555 4445555556667777777
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 046479 157 KAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 157 Ke~~L~eeN~~L~~k~~~~~~ 177 (228)
.+..+.+.|..|.+++...+.
T Consensus 190 ~~~~~~~q~~~le~ki~~lq~ 210 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSLQS 210 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888877766543
No 129
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=33.47 E-value=5.7 Score=30.09 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=28.0
Q ss_pred chhHHHhhhh---------hHhhhhhhhhcccCcchhheeeecCCc
Q 046479 17 RQATFAKRRD---------GLLKKAYELSLLCDAEVALIIFSSHGM 53 (228)
Q Consensus 17 RqvTFsKRr~---------GL~KKA~ELSvLCdaeValIvfS~~Gk 53 (228)
+-.-||+-|+ |=+-|+.|+.+=||.|+-+|+..+.|.
T Consensus 50 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 50 EAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred eEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 3344566666 445567899999999999999999664
No 130
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=33.45 E-value=15 Score=25.03 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=28.2
Q ss_pred hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCC
Q 046479 34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTS 77 (228)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~ 77 (228)
||-|+ +=|+||||+|. |+.+... ++-+.+-.|++.....
T Consensus 8 ElliI--lvv~LlvfGp~-kLP~l~r--~lGk~i~~frk~~~~~ 46 (63)
T PRK14859 8 ELIVI--LVIVLIVFGAG-KLPEIGG--GLGKSIKNFKKATSEK 46 (63)
T ss_pred HHHHH--HHHHHHHhCch-HHHHHHH--HHHHHHHHHHHHhccc
Confidence 44444 24799999985 9998866 5788888888775543
No 131
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.33 E-value=2.1e+02 Score=21.49 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHhhHHHH--HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSR--QRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR--~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
++|++++..+-...+..-.... ....+++.+++..|+.+...|.+.-..|..++..
T Consensus 55 G~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 55 GFSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred CCCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778777776655443221111 1223566777777777777777766666666543
No 132
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.32 E-value=3.8e+02 Score=26.87 Aligned_cols=87 Identities=22% Similarity=0.252 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHhhhhc-----CCCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhH
Q 046479 90 ALFREILRLRALRESLE---RSQRHFL-----GEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDL 161 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq---~~~r~l~-----Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L 161 (228)
.+..++.+|+.++...+ .+.|.-+ +|..-.-.+..|++=-++|+..+..+-..| |.-...|..|.+|.+..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR-q~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQAR-QQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 46666666666665432 2333221 111111124445544555666665553333 34457788888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 046479 162 EEENKQLKFKLEEAIR 177 (228)
Q Consensus 162 ~eeN~~L~~k~~~~~~ 177 (228)
++.-..|.+++.+..+
T Consensus 501 ~~~R~~lEkQL~eErk 516 (697)
T PF09726_consen 501 RRQRASLEKQLQEERK 516 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888876543
No 133
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=33.07 E-value=24 Score=23.86 Aligned_cols=31 Identities=13% Similarity=0.402 Sum_probs=22.6
Q ss_pred cCcchhheeeecCCcccccccccchhHHHHHH
Q 046479 39 CDAEVALIIFSSHGMLFEFGSNFGMAKILERY 70 (228)
Q Consensus 39 CdaeValIvfS~~Gkl~ef~s~~s~~~ileRY 70 (228)
|+..-.++|. |.|..|...++..+..|++.+
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 6655555555 788888888877888888753
No 134
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=32.98 E-value=77 Score=29.95 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
-.+|++|+..|..+|..|..++...+
T Consensus 288 NqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 288 NQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred cHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34677777777777777777776554
No 135
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.93 E-value=2e+02 Score=21.44 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
+|++|+..+-...+.+-... ..-.+++.+++..+.++...|......|...+
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 58 FSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888765544321111 12235566666666666666666666655443
No 136
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.85 E-value=19 Score=30.53 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=15.4
Q ss_pred cchhheeeecCCcccc--ccc
Q 046479 41 AEVALIIFSSHGMLFE--FGS 59 (228)
Q Consensus 41 aeValIvfS~~Gkl~e--f~s 59 (228)
-|-||-||||+|.|+. |+-
T Consensus 4 ydraltvFSPDGhL~QVEYAq 24 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYAQ 24 (249)
T ss_pred cccceEEECCCCCEEeeHhHH
Confidence 3668999999999986 654
No 137
>PTZ00370 STEVOR; Provisional
Probab=32.82 E-value=57 Score=28.95 Aligned_cols=27 Identities=11% Similarity=0.383 Sum_probs=20.6
Q ss_pred cccCcchhheeeecCCcccccccccchhHHHHHHHh
Q 046479 37 LLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQ 72 (228)
Q Consensus 37 vLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~ 72 (228)
+||..|. ++| .|-++|.|++|++.|.+
T Consensus 42 ~L~Ecel----~~p-----~YdNDpemK~i~d~~n~ 68 (296)
T PTZ00370 42 LLAQTQN----HNP-----HYHNDPELKEIIDKMNE 68 (296)
T ss_pred ehhhhhc----CCC-----CCCCcHHHHHHHHHHhH
Confidence 5777663 444 57788999999999876
No 138
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=32.77 E-value=3.4e+02 Score=23.83 Aligned_cols=55 Identities=29% Similarity=0.332 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCC---CCCCCHHHHHHHHHHHHHhhHHHHHHHh
Q 046479 90 ALFREILRLRALRESLERSQRHFLGED---LGTLGVKELQKLEKQLDKTLSLSRQRKT 144 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~~r~l~Ge~---L~~LS~~EL~~LE~qLe~sL~~IR~rK~ 144 (228)
-+..+...|.++++..++..-.++-.+ |..+.-++|+.+-.+|+..|..+.++-.
T Consensus 56 ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~Kne 113 (268)
T PF11802_consen 56 LLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNE 113 (268)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777665555332 3456778999999999999988877643
No 139
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.63 E-value=1.9e+02 Score=21.44 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHhh---HHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTL---SLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKF 170 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL---~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~ 170 (228)
+|++|+..+-...+..- .... ...+++.+++..+..+...|...-..|..
T Consensus 57 ~sl~eI~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 57 LTLEEIREFLPCLRGGEPTFRPCP-DLLAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred CCHHHHHHHHHHhhCCCccCCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887765544321 1111 12355566666666666666655555544
No 140
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.49 E-value=1.5e+02 Score=21.97 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=9.0
Q ss_pred cchhHHHHHHHhhc
Q 046479 61 FGMAKILERYRQYC 74 (228)
Q Consensus 61 ~s~~~ileRY~~~~ 74 (228)
+.+...+..|+.+-
T Consensus 3 ~~~q~~~~~~q~~q 16 (110)
T TIGR02338 3 PQVQNQLAQLQQLQ 16 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777776653
No 141
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=32.45 E-value=55 Score=21.12 Aligned_cols=17 Identities=35% Similarity=0.223 Sum_probs=10.5
Q ss_pred CCCCCCHHHHHHHHHHH
Q 046479 116 DLGTLGVKELQKLEKQL 132 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qL 132 (228)
.|..+|++||++.-..|
T Consensus 4 fLk~ls~~eL~~rl~~L 20 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASL 20 (49)
T ss_dssp GGGGS-HHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhC
Confidence 46678899988644444
No 142
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=32.41 E-value=6.2e+02 Score=26.70 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCC-C------CCCCHHHHHHHHHHHHHhhHHHHHHHhhhH
Q 046479 90 ALFREILRLRALRESLERSQRHFLGED-L------GTLGVKELQKLEKQLDKTLSLSRQRKTDLM 147 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~~r~l~Ge~-L------~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~ 147 (228)
.+..|+.+||..+-..+..+=-++-++ . -.--.+.++++|.+|+..-+.|+......+
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777766544332222111 1 011245667788888877777777776555
No 143
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=32.26 E-value=1e+02 Score=19.57 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEEN 165 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN 165 (228)
+-+-++|.+|++|-..|..++
T Consensus 22 edid~qIaeLe~KR~~Lv~qH 42 (46)
T PF08946_consen 22 EDIDEQIAELEAKRQRLVDQH 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334678899998887777665
No 144
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=32.02 E-value=15 Score=26.07 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=22.3
Q ss_pred chhheeeecCCcccccccccchhHHHHHHHhhcc
Q 046479 42 EVALIIFSSHGMLFEFGSNFGMAKILERYRQYCY 75 (228)
Q Consensus 42 eValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~ 75 (228)
=||||||+| .|+++..- ++-+.+.++++...
T Consensus 13 vvallv~GP-~kLP~~~r--~~G~~i~~~r~~~~ 43 (80)
T TIGR01410 13 VVALVVLGP-ERLPVAIR--AVGKFVRRLRGMAS 43 (80)
T ss_pred HHHHheECc-hHHHHHHH--HHHHHHHHHHHhhH
Confidence 478999988 67777664 46777777777543
No 145
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=31.93 E-value=15 Score=32.27 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=25.8
Q ss_pred hHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHH
Q 046479 19 ATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKIL 67 (228)
Q Consensus 19 vTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~il 67 (228)
+||.+| +||+ +--+..++++.+ .||.|.|+|...+.+..
T Consensus 210 ~tl~~~-~GLL-------lPG~p~~Gv~~~--~~k~y~F~s~~aa~~F~ 248 (281)
T PF12018_consen 210 WTLAER-DGLL-------LPGNPSIGVLKY--KDKYYAFSSREAAYRFA 248 (281)
T ss_pred EEEecc-Ccee-------ecCCCccceeEE--cCEEEEeCCHHHHHHHH
Confidence 355555 4754 556677787777 78999999955444333
No 146
>PHA03162 hypothetical protein; Provisional
Probab=31.89 E-value=2.5e+02 Score=21.98 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhcCCC----CCCCCHHHHHHHHHHHHHhhHHHHHHH
Q 046479 86 LEPEALFREILRLRALRESLERSQRHFLGED----LGTLGVKELQKLEKQLDKTLSLSRQRK 143 (228)
Q Consensus 86 ~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge~----L~~LS~~EL~~LE~qLe~sL~~IR~rK 143 (228)
...+.+..|+.+|+-++..|.+..++-.|.+ =..|+..+=+-+-...-.+|...-++|
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK 74 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK 74 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999887766655 235888888888777777777766665
No 147
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=31.45 E-value=3.8e+02 Score=24.50 Aligned_cols=44 Identities=27% Similarity=0.429 Sum_probs=24.3
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 131 QLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 131 qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+||..+.+.++++. .+.-+++.+++.-+.-.|++..|.+++.|.
T Consensus 131 ~LE~li~~~~EEn~-~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 131 HLEGLIRHLREENQ-CLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHHHHHHH-HHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 44455555555443 334456666666666666666666665543
No 148
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.37 E-value=1.1e+02 Score=25.20 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhcCC--CC-CCCCHHHHHHHHHHHHHhhHHHHHH
Q 046479 86 LEPEALFREILRLRALRESLERSQRHFLGE--DL-GTLGVKELQKLEKQLDKTLSLSRQR 142 (228)
Q Consensus 86 ~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge--~L-~~LS~~EL~~LE~qLe~sL~~IR~r 142 (228)
.+.+.+..++.+|.+++..|+...+.+-.| .| ..||++|+|.=-+.|..-...-|.|
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~er 138 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRER 138 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777776654432 22 3567787777666666655555444
No 149
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=31.08 E-value=1.1e+02 Score=17.92 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHH
Q 046479 124 ELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQK 156 (228)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~Lkk 156 (228)
.+..|+..++.+...-+=-+-..+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 456667777777666666666666666666654
No 150
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.74 E-value=4.9e+02 Score=27.46 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=11.6
Q ss_pred eeecCCcccccccccchhHHHHHHHhh
Q 046479 47 IFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 47 vfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
||.|.|-+.-=+.+.+.. +|..++.+
T Consensus 654 V~dP~GtlTGGs~~~~a~-~L~~l~~l 679 (1174)
T KOG0933|consen 654 VYDPSGTLTGGSRSKGAD-LLRQLQKL 679 (1174)
T ss_pred eeCCCCcccCCCCCCccc-HHHHHHHH
Confidence 455666555422222222 45544444
No 151
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=30.54 E-value=25 Score=24.31 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=22.6
Q ss_pred ccCcchhheeeecCCcccccccccchhHHHHHH
Q 046479 38 LCDAEVALIIFSSHGMLFEFGSNFGMAKILERY 70 (228)
Q Consensus 38 LCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY 70 (228)
.|+...+++| .|..|...++..+.+|++.|
T Consensus 51 ~C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 51 ACDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred cCCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 3777776666 38888888877888888764
No 152
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=30.21 E-value=1.8e+02 Score=23.10 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
+|++|+..+-...+..-...-..-..++.+++..+.++...|+..-..|...+
T Consensus 68 ~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~i 120 (154)
T PRK15002 68 IPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888766543221111111234455666666666666666655555543
No 153
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=30.19 E-value=18 Score=27.28 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=22.4
Q ss_pred chhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 42 EVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 42 eValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
=||||||+| .||++... ++-+.+-+|++..
T Consensus 14 vVallvfGP-kKLPelar--~lGk~i~~fk~~~ 43 (108)
T PRK14858 14 VIALIVIGP-QKLPDLAR--SLGRGLAEFKKAT 43 (108)
T ss_pred HHHHHhcCc-hHHHHHHH--HHHHHHHHHHHHH
Confidence 489999987 78888765 4777777777654
No 154
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=29.39 E-value=1.4e+02 Score=27.35 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046479 90 ALFREILRLRALRESLE 106 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq 106 (228)
.++.|+..|+++++..+
T Consensus 98 RL~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 98 RLRREVEELKEELEKRK 114 (388)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555555555443
No 155
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=29.36 E-value=1.5e+02 Score=21.24 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
..+..+++.+++....|.++|..|+-+....
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455679999999999999999999887654
No 156
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=29.22 E-value=2.5e+02 Score=21.17 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+|++|+..+-...+..-... ..-..++.+++..+.++...|+.....|...+.
T Consensus 58 ~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02044 58 FSLEECKELLNLWNDPNRTS-ADVKARTLEKVAEIERKISELQSMRDQLEALAQ 110 (127)
T ss_pred CCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888655332211111 112245667777777777777777777766553
No 157
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=29.20 E-value=23 Score=26.24 Aligned_cols=29 Identities=31% Similarity=0.287 Sum_probs=21.3
Q ss_pred hhhhhhcccCcchhheeeecCCcccccccc
Q 046479 31 KAYELSLLCDAEVALIIFSSHGMLFEFGSN 60 (228)
Q Consensus 31 KA~ELSvLCdaeValIvfS~~Gkl~ef~s~ 60 (228)
|-.||--+-+|= |.=.|||+|||.+|-++
T Consensus 4 kLdeLlqi~Gv~-AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 4 KLDELLQIKGVM-AAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hHHHHhCcccee-EeceeCCCCceEEeeCC
Confidence 455666666653 55679999999999873
No 158
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=29.19 E-value=2e+02 Score=22.01 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHH-hhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDK-TLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~-sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
++|++|+..+-..... .-... ..-..++.+++..++++...|..-...|...+.
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSC-AEVKAIVDAKLELVDEKINELTKIRRSLKKLSD 112 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888887654311 10011 122356777788888888777776666655543
No 159
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.17 E-value=23 Score=30.06 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=13.7
Q ss_pred CcchhheeeecCCcccc
Q 046479 40 DAEVALIIFSSHGMLFE 56 (228)
Q Consensus 40 daeValIvfS~~Gkl~e 56 (228)
+-|--+.||||.|+||.
T Consensus 8 gfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 8 GFDRHITIFSPEGRLYQ 24 (246)
T ss_pred CccceEEEECCCceEEe
Confidence 34556789999999996
No 160
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=29.08 E-value=5.5e+02 Score=25.01 Aligned_cols=60 Identities=27% Similarity=0.365 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046479 118 GTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRA 178 (228)
Q Consensus 118 ~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~~ 178 (228)
....+-+|+.--..++.+|..|.+...+ +.+.+..|++-|....+.-..++.++.+..+.
T Consensus 373 ~~~~yS~lq~~l~~~~~~l~~i~~~q~~-~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~ 432 (570)
T COG4477 373 QEVAYSELQDNLEEIEKALTDIEDEQEK-VQEHLTSLRKDELEARENLERLKSKLHEIKRY 432 (570)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777888888888665554 47889999999999999999999999886554
No 161
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=29.00 E-value=2.5e+02 Score=21.15 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+|++|+..+-...+..-... ..-.+++.+++..+..+...|++....|...+.
T Consensus 58 ~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (126)
T cd04785 58 FSLEEIRALLALSDRPDRSC-AEADAIARAHLADVRARIADLRRLEAELKRMVA 110 (126)
T ss_pred CCHHHHHHHHhhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888755433211111 122356677788888888888777777776654
No 162
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=28.97 E-value=2e+02 Score=22.27 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
++|++|+..+-......-...-..-..++.+++..+.++...|.+....|....
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888887654321100000011234566777777777777766666665544
No 163
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=28.87 E-value=30 Score=21.55 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=16.5
Q ss_pred cCcch---hheeeecCCcccccccccch
Q 046479 39 CDAEV---ALIIFSSHGMLFEFGSNFGM 63 (228)
Q Consensus 39 CdaeV---alIvfS~~Gkl~ef~s~~s~ 63 (228)
|+..| +-.-..-+|+.|-|+|..+.
T Consensus 6 cg~~v~~~~~~~~~y~G~~Y~FCS~~C~ 33 (47)
T PF04945_consen 6 CGMKVPGNAAYSVEYNGRTYYFCSEGCK 33 (47)
T ss_dssp GG-BE-----EEEEETTEEEEESSHHHH
T ss_pred CCCEEccCccEEEEECCEEEEEcCHHHH
Confidence 66666 55566678999999995543
No 164
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=28.85 E-value=6.2e+02 Score=25.56 Aligned_cols=17 Identities=47% Similarity=0.507 Sum_probs=10.0
Q ss_pred HHhHHHHHHHHHHHHHH
Q 046479 158 AHDLEEENKQLKFKLEE 174 (228)
Q Consensus 158 e~~L~eeN~~L~~k~~~ 174 (228)
.+.|.|+...|..++++
T Consensus 130 i~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 130 IKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666666654
No 165
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.26 E-value=6.4e+02 Score=25.56 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 046479 123 KELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQ 155 (228)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~Lk 155 (228)
.|+..+...|+..+..++.+|.+++.+--.+.+
T Consensus 539 ~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~ 571 (771)
T TIGR01069 539 KEQEKLKKELEQEMEELKERERNKKLELEKEAQ 571 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666655544333333
No 166
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.20 E-value=5.7e+02 Score=24.92 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=8.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k 171 (228)
..++......+.+++..|..+
T Consensus 194 ~kel~~~~e~l~~E~~~L~~q 214 (546)
T PF07888_consen 194 QKELTESSEELKEERESLKEQ 214 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 167
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.13 E-value=4e+02 Score=24.16 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHH
Q 046479 93 REILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQ 141 (228)
Q Consensus 93 ~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~ 141 (228)
+|...|.++...||...+.+.. .++|+..+...--.++.+=|.
T Consensus 4 eEW~eL~~efq~Lqethr~Y~q------Kleel~~lQ~~C~ssI~~Qkk 46 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQ------KLEELSKLQDKCSSSISHQKK 46 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677776666553 456666666555555555443
No 168
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=28.04 E-value=2.3e+02 Score=21.94 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHhh-HHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTL-SLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL-~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
++|++|+.++-..+...- ..... -..++..++..+.++...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 110 (139)
T cd01110 57 GLSLAEIAEALATLPEDRTPTKAD-WERLSRAWRDRLDERIAELQQLRDQLDGCI 110 (139)
T ss_pred CCCHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999888755433221 11111 123444555666666666666666665554
No 169
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=28.02 E-value=2.5e+02 Score=20.82 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046479 89 EALFREILRLRALRESL 105 (228)
Q Consensus 89 q~l~~E~~kLk~kie~L 105 (228)
+.|..||..||++++.|
T Consensus 8 q~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 8 QTWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 57889999999999988
No 170
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.98 E-value=2.6e+02 Score=20.99 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
++|++|+..+-...+..-... ..-..++.+++..+.++...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T cd04784 57 DMSLDEIRTLLQLQDDPEASC-AEVNALIDEHLAHVRARIAELQALEKQLQALR 109 (127)
T ss_pred CCCHHHHHHHHHhhhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999988765433211111 11235666777777777777766666665544
No 171
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.85 E-value=2.6e+02 Score=20.94 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 046479 148 RQHLETLQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 148 ~~~i~~LkkKe~~L~eeN~~L~~k 171 (228)
.++++.++++.+.+.++.+.|+++
T Consensus 93 ~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 93 QQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555443
No 172
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.79 E-value=2.1e+02 Score=26.62 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHH----HHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHH
Q 046479 89 EALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQL----DKTLSLSRQRKTDLMRQHLETLQKKAHDLEEE 164 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qL----e~sL~~IR~rK~ql~~~~i~~LkkKe~~L~ee 164 (228)
+.+++.+.++++++...+..... ++.|--.|-..- -..++.+=++|+|.-...|+.|++|....+..
T Consensus 7 ~~l~~Ki~~~~eqi~~e~~~rd~---------nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~ 77 (395)
T PF10267_consen 7 DHLQQKILKLKEQIKVEQTARDE---------NVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYHKR 77 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46777777887777665543321 223322222222 34567777999999999999999997665554
Q ss_pred HHHH
Q 046479 165 NKQL 168 (228)
Q Consensus 165 N~~L 168 (228)
-+.|
T Consensus 78 l~el 81 (395)
T PF10267_consen 78 LKEL 81 (395)
T ss_pred HHHH
Confidence 4444
No 173
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=27.79 E-value=2.7e+02 Score=20.99 Aligned_cols=51 Identities=25% Similarity=0.323 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+|++|+..+-...+. ..... -..++.+++..++++...|..-...|...+.
T Consensus 57 ~sl~eI~~~l~~~~~--~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 107 (124)
T TIGR02051 57 FSLEEIGGLLGLVDG--THCRE-MYELASRKLKSVQAKMADLLRIERLLEELLE 107 (124)
T ss_pred CCHHHHHHHHhcccC--CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888876543332 11111 1245666677777777776666666655443
No 174
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.75 E-value=4.4e+02 Score=23.49 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 046479 123 KELQKLEKQLDKTLSLSR 140 (228)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR 140 (228)
++|..||..-+.....++
T Consensus 64 ~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 64 QELEELEKEREELDQELE 81 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555444444443
No 175
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=27.60 E-value=82 Score=19.83 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=13.6
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 142 RKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 142 rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+.+..+.-.|.+|.++.-.|..||..|+.+..
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 44566677888899999999999999988753
No 176
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=27.48 E-value=2.8e+02 Score=21.04 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 046479 156 KKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 156 kKe~~L~eeN~~L~~k~~~ 174 (228)
..-..|+=||..|++.+.+
T Consensus 36 EEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 36 EENTALRLENEKLRERLGE 54 (114)
T ss_pred HhhHHHHhhHHHHHHHhCC
Confidence 3345777788888888766
No 177
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=27.42 E-value=4.3e+02 Score=23.25 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 121 S~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
++--|.++|+.|+.++.++----.+| ++-+.|-.-++.|.+|-..|+..+.-..
T Consensus 131 ti~sleDfeqrLnqAIErnAfLESEL--dEke~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 131 TIYSLEDFEQRLNQAIERNAFLESEL--DEKEVLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667778888877663222222 1222333345667777777777765443
No 178
>PRK09039 hypothetical protein; Validated
Probab=27.40 E-value=4.6e+02 Score=23.64 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHH-HHHHH
Q 046479 125 LQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEE-NKQLK 169 (228)
Q Consensus 125 L~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~ee-N~~L~ 169 (228)
|..|+..|+.+=.+.++. ..+|++|+.+...+..+ ...|.
T Consensus 153 la~le~~L~~ae~~~~~~-----~~~i~~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 153 LAALEAALDASEKRDRES-----QAKIADLGRRLNVALAQRVQELN 193 (343)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777776666655444 45667777776655433 44443
No 179
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=27.17 E-value=3e+02 Score=24.20 Aligned_cols=51 Identities=27% Similarity=0.317 Sum_probs=31.8
Q ss_pred HHHHHHHHH-HHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 122 VKELQKLEK-QLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 122 ~~EL~~LE~-qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
..|+..||+ .+.....--++|| ..++.|..|++|+..|.-+|..|-..+..
T Consensus 201 ~qe~~kleRkrlrnreaa~Kcr~--rkLdrisrLEdkv~~lk~~n~~L~~~l~~ 252 (279)
T KOG0837|consen 201 DQEKIKLERKRLRNREAASKCRK--RKLDRISRLEDKVKTLKIYNRDLASELSK 252 (279)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 445555554 2333333334443 44699999999999888888777655443
No 180
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=27.00 E-value=4.8e+02 Score=25.30 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQL 168 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L 168 (228)
++.+|.++++|++.+.-|+..|
T Consensus 238 Llsql~d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 238 LLSQLVDLQKKIKYLRHEKEEL 259 (596)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 3455555666655544444433
No 181
>PLN03237 DNA topoisomerase 2; Provisional
Probab=26.95 E-value=8.8e+02 Score=26.73 Aligned_cols=129 Identities=24% Similarity=0.314 Sum_probs=0.0
Q ss_pred heeeecCCcccccccccchhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHH----------------------
Q 046479 45 LIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALR---------------------- 102 (228)
Q Consensus 45 lIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~ki---------------------- 102 (228)
+++|.++|++..|.+ +..||+.|-.+...--. .-.+.-...+..++.++..+.
T Consensus 989 m~l~d~~G~i~k~~~---~~~Il~~F~~~Rl~~Y~--kRk~~~~~~~~~el~k~~~k~~fI~~vi~g~i~i~~k~k~~l~ 1063 (1465)
T PLN03237 989 MHLFDSKGVIKKYDT---PEQILEEFFHLRLEYYE--KRKEVLLKNLEFELLKLENKVRFILAVVDGEIIVNNRKKADLV 1063 (1465)
T ss_pred EEEEcCCCCcceeCC---HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEccCCHHHHH
Q ss_pred HHHHHH------------------------------------------hhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHH
Q 046479 103 ESLERS------------------------------------------QRHFLGEDLGTLGVKELQKLEKQLDKTLSLSR 140 (228)
Q Consensus 103 e~Lq~~------------------------------------------~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR 140 (228)
+.|... -..|+|-.|.+|+.+....|..+.+..-..+.
T Consensus 1064 ~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~slT~E~~~kL~~~~~~k~~el~ 1143 (1465)
T PLN03237 1064 EELRQKGFTPFPKKAKSVEAAVAGATDDAAEEEEEIDVSSSSGVRGSDYDYLLSMAIGTLTLEKVQELCADRDKLNIEVE 1143 (1465)
T ss_pred HHHHHcCCCccchhhcccccccccccccccccccccccccccccccccchHHhcCcHhhcCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046479 141 QRK----TDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRA 178 (228)
Q Consensus 141 ~rK----~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~~ 178 (228)
.-+ .++..+-++.+.+.-....++-..-+..++.....
T Consensus 1144 ~l~~~t~~~lW~~DLd~f~~~~~~~~~~~~~~~~~~~~~~~~ 1185 (1465)
T PLN03237 1144 DLKKTTPKSLWLKDLDALEKELDKLDKEDAKAEEAREKLQRA 1185 (1465)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 182
>PLN03128 DNA topoisomerase 2; Provisional
Probab=26.85 E-value=5.4e+02 Score=27.47 Aligned_cols=28 Identities=21% Similarity=0.422 Sum_probs=22.5
Q ss_pred hheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 44 ALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 44 alIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
-+++|.+.|++..|.+ +.+||+.|-.+.
T Consensus 961 nm~l~d~~~~i~ky~~---~~~il~~f~~~R 988 (1135)
T PLN03128 961 NMHLFDKDGKIKKYDS---PEDILEEFFHLR 988 (1135)
T ss_pred EEEEECCCCcccCCCC---HHHHHHHHHHHH
Confidence 4678899999998876 788899887654
No 183
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.75 E-value=81 Score=26.96 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhheeeecCCcccccccccchhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCH
Q 046479 43 VALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGV 122 (228)
Q Consensus 43 ValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~ 122 (228)
+++.++++.+ ...-.+...+.++...-...........+.+..+.+.+..+|..+..+++.|+..++++-. .+
T Consensus 7 ~~~~~l~~~~-~~~a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~------~v 79 (251)
T PF11932_consen 7 LGALLLASSA-AAAAATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLER------QV 79 (251)
T ss_pred HHHHHHHhhh-hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhh---hHHHHHHHHHH
Q 046479 123 KELQKLEKQLDKTLSLSRQRKTD---LMRQHLETLQK 156 (228)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~q---l~~~~i~~Lkk 156 (228)
..++.--..|+..+..|...+.+ +|.+-++.|+.
T Consensus 80 ~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 80 ASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 184
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=26.66 E-value=29 Score=27.32 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.2
Q ss_pred hhcccCcchhheeeecCCccccccc
Q 046479 35 LSLLCDAEVALIIFSSHGMLFEFGS 59 (228)
Q Consensus 35 LSvLCdaeValIvfS~~Gkl~ef~s 59 (228)
+.++|||||-++|-|.+.+-.-||.
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~p 83 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFPP 83 (148)
T ss_pred HHHhhccceeeeeecccCccccCCc
Confidence 5789999999999998877555643
No 185
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=26.57 E-value=5.2e+02 Score=25.19 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046479 90 ALFREILRLRALRESLERS 108 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~ 108 (228)
.+..++.+|+.+++.+...
T Consensus 110 ~~e~ei~kl~~e~~elr~~ 128 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKK 128 (546)
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3445555555555555443
No 186
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=26.45 E-value=2.2e+02 Score=20.57 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLD 133 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe 133 (228)
+++++++..+-...+
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 588999888766553
No 187
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=26.29 E-value=5.4 Score=28.16 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=26.5
Q ss_pred chhHHHhhhhhH---------hhhhhhhhcccCcchhheeeecCCc
Q 046479 17 RQATFAKRRDGL---------LKKAYELSLLCDAEVALIIFSSHGM 53 (228)
Q Consensus 17 RqvTFsKRr~GL---------~KKA~ELSvLCdaeValIvfS~~Gk 53 (228)
+-+-||+-|++| +-++.|+.+-||.|+-|+..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 334457777666 4456789999999999999999887
No 188
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=26.25 E-value=26 Score=24.16 Aligned_cols=31 Identities=10% Similarity=0.400 Sum_probs=23.6
Q ss_pred chhheeeecCCcccccccccchhHHHHHHHhhcc
Q 046479 42 EVALIIFSSHGMLFEFGSNFGMAKILERYRQYCY 75 (228)
Q Consensus 42 eValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~ 75 (228)
=|||+||.|+ ||.+.+. ++-+.+.-|++...
T Consensus 14 vI~lllFGpk-KLp~lg~--~lGk~i~~Fk~~~~ 44 (67)
T PRK03625 14 ALVVLLFGTK-KLRTLGG--DLGAAIKGFKKAMN 44 (67)
T ss_pred HHHHHHcCcc-HHHHHHH--HHHHHHHHHHHHhc
Confidence 3789999984 9988876 47778888886543
No 189
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.23 E-value=2.5e+02 Score=21.16 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+|++|+.++-..-+.. .. ..-.+++.++++.++++...|+..-..|...+.
T Consensus 58 ~sL~eI~~~l~~~~~~--~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 108 (126)
T cd04783 58 FTLDEIAELLELDDGT--DC-SEARELAEQKLAEVDEKIADLQRMRASLQELVS 108 (126)
T ss_pred CCHHHHHHHHhcccCC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888765432211 11 112345666777777777776666666655543
No 190
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.00 E-value=3.1e+02 Score=21.09 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 146 LMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 146 l~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
.+.-+|..|.+++..+.++-..|+.+|...
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888888888888888888887665
No 191
>PRK00404 tatB sec-independent translocase; Provisional
Probab=25.93 E-value=22 Score=28.15 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=20.7
Q ss_pred cchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479 41 AEVALIIFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 41 aeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
+=||||||+| .||.+..- .+-..+-++++.
T Consensus 13 ~VVaLlV~GP-kkLP~laR--~lG~~i~~~rr~ 42 (141)
T PRK00404 13 GLVALLVLGP-ERLPGAAR--TAGLWIGRLKRS 42 (141)
T ss_pred HHHHHHhcCc-hHHHHHHH--HHHHHHHHHHHH
Confidence 3489999998 57777654 356666666654
No 192
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=25.92 E-value=5.5e+02 Score=23.98 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=40.2
Q ss_pred hhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhcCCC------CCCCCHHHHHHHHHHHHHh
Q 046479 63 MAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGED------LGTLGVKELQKLEKQLDKT 135 (228)
Q Consensus 63 ~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge~------L~~LS~~EL~~LE~qLe~s 135 (228)
++.+++.|.......... ....-.+++..++..++.+++..+...+.+.-++ -.+.....|.++++++...
T Consensus 140 ~n~l~~~yi~~~~~~~~~--~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 216 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQ--DSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAA 216 (498)
T ss_pred HHHHHHHHHHhhcccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHH
Confidence 445566687765432211 1112236888999999999998887776654221 1122345556665554433
No 193
>PF11291 DUF3091: Protein of unknown function (DUF3091); InterPro: IPR021442 This eukaryotic family of proteins has no known function.
Probab=25.68 E-value=2.4e+02 Score=20.99 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHh
Q 046479 89 EALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKT 135 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~s 135 (228)
+.+..-..+|+.-.+.+|....++.-..-...+.+|+..|+..+-..
T Consensus 21 E~l~~~~~~Lkq~f~~~qS~~~~mTC~~PeNI~~~D~~~L~~~I~~~ 67 (100)
T PF11291_consen 21 EKLNRCSVKLKQYFDKLQSKKENMTCNRPENISEKDLNNLENSIQNY 67 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 56677777888888889888888887778899999999999887543
No 194
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=25.62 E-value=1.7e+02 Score=21.94 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
..+++..|++....|..||..|++.+.-
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999887643
No 195
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=25.56 E-value=2e+02 Score=26.13 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
.|++.|++|+-.| ..-+.-+..++++|+.|...| ||..|++-+.+...
T Consensus 25 ~~~~~~~~e~~aL------------r~EN~~LKkEN~~Lk~eVerL--E~e~l~s~V~E~ve 72 (420)
T PF07407_consen 25 ELEGVSIDENFAL------------RMENHSLKKENNDLKIEVERL--ENEMLRSHVCEDVE 72 (420)
T ss_pred cccccchhhhhhH------------HHHhHHHHHHHHHHHHHHHHH--HHHhhhhhhhhHHH
No 196
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=25.43 E-value=2.8e+02 Score=20.43 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=5.5
Q ss_pred HHHHHHHHhHHHHH
Q 046479 152 ETLQKKAHDLEEEN 165 (228)
Q Consensus 152 ~~LkkKe~~L~eeN 165 (228)
..|+.....+.+.|
T Consensus 91 ~~l~~~~~~~~~~n 104 (143)
T PF05130_consen 91 RELRELLEELQELN 104 (143)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444443333333
No 197
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=25.42 E-value=1.2e+02 Score=26.78 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=26.4
Q ss_pred HHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHH
Q 046479 105 LERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLS 139 (228)
Q Consensus 105 Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~I 139 (228)
+++...++--|.|.+|+++||.+|-..|-..+..|
T Consensus 204 ~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~v 238 (285)
T PF06937_consen 204 LQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDV 238 (285)
T ss_pred ccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHH
Confidence 34445667778999999999999988886555444
No 198
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=25.39 E-value=2.8e+02 Score=22.70 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 148 RQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 148 ~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
.++|..|+.+...|..+|..|.++..
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~ 135 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELA 135 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666544
No 199
>PRK11239 hypothetical protein; Provisional
Probab=25.15 E-value=1.5e+02 Score=25.17 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=37.3
Q ss_pred CCccchhHHHhhhhh-----HhhhhhhhhcccCcchhheeeec---------CCcccccccccchhHHHHHHHhhc
Q 046479 13 NKINRQATFAKRRDG-----LLKKAYELSLLCDAEVALIIFSS---------HGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 13 n~~~RqvTFsKRr~G-----L~KKA~ELSvLCdaeValIvfS~---------~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
...+|-+-|--|-.- |-==..|+++|| .|+.=+| ++++|.|++-++++.+|++.....
T Consensus 73 ~~gsRv~Ky~Hr~~~~ef~~l~l~~~~~All~----~LlLRGPQT~gELRtRs~Rl~~F~dv~~Ve~~L~~L~~r~ 144 (215)
T PRK11239 73 GFGNRVTKYEQRFCNSEFGDLKLSAAEVALIT----TLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANRE 144 (215)
T ss_pred CCCcchHHHHHhcccccccccCCCHHHHHHHH----HHHhcCCCChHHHHHhHhcCCcCCCHHHHHHHHHHHHhcc
Confidence 345677777776542 323344555555 2222244 679999999778999999877653
No 200
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.09 E-value=3.3e+02 Score=21.09 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHH---hhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDK---TLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKF 170 (228)
Q Consensus 120 LS~~EL~~LE~qLe~---sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~ 170 (228)
+|++|+..+-...+. ....+ ..+.+.+..++..+..+...|.+-...|..
T Consensus 57 ~sL~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 57 LSLAEIKDQLEEVQRSDKEQREV-AQEVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred CCHHHHHHHHHhhccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667776665544332 12222 233445667777777777766666665533
No 201
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.53 E-value=2.4e+02 Score=19.28 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
+.+.|+.|=..-..|.++|..|+.+...
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666777777777776654
No 202
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.44 E-value=6.8e+02 Score=24.55 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 046479 90 ALFREILRLRALRESLERSQRHF 112 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~~r~l 112 (228)
.+..++.++..+++.+.+.++..
T Consensus 395 ~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 395 QLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555566666666665554443
No 203
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=24.40 E-value=73 Score=26.11 Aligned_cols=19 Identities=47% Similarity=0.555 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 046479 123 KELQKLEKQLDKTLSLSRQ 141 (228)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~ 141 (228)
.||+.||.||+..+..||+
T Consensus 159 qElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3567788888888777764
No 204
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.33 E-value=3.3e+02 Score=20.83 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=26.5
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 131 QLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 131 qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
.++.++.-+..|+ ..+..++..+++....+.++-..+...+.+.
T Consensus 91 ~~~eA~~~l~~~~-~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 91 DLDEAIEILDKRK-EELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554443 3345666777777777777666666666554
No 205
>PRK10869 recombination and repair protein; Provisional
Probab=24.31 E-value=6.5e+02 Score=24.30 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 94 EILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 94 E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
++..+.+++..+++-.|++- .|++++-..-+.+..-|..+.... +.+..|+++...+.++-..+..++.
T Consensus 297 ~l~~ie~Rl~~l~~L~rKyg------~~~~~~~~~~~~l~~eL~~L~~~e-----~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 297 RLAELEQRLSKQISLARKHH------VSPEELPQHHQQLLEEQQQLDDQE-----DDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666556553 366666666666666666554332 3344444444444444444444443
No 206
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.27 E-value=8e+02 Score=25.32 Aligned_cols=82 Identities=23% Similarity=0.185 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHH
Q 046479 89 EALFREILRLRALRESLERSQRHFLG--EDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENK 166 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r~l~G--e~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~ 166 (228)
..+-.++.+|-+.++.+-+..-.--+ +....++.+++.++..+....-.-||+- .-+++.|+++++.|.-+|.
T Consensus 614 ~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~l-----D~~~e~lkQ~~~~l~~e~e 688 (970)
T KOG0946|consen 614 LALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIREL-----DYQIENLKQMEKELQVENE 688 (970)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHH
Confidence 46777888887776665333222112 2344566777777766665544444443 3567788888888888888
Q ss_pred HHHHHHHHH
Q 046479 167 QLKFKLEEA 175 (228)
Q Consensus 167 ~L~~k~~~~ 175 (228)
.|..++...
T Consensus 689 eL~~~vq~~ 697 (970)
T KOG0946|consen 689 ELEEEVQDF 697 (970)
T ss_pred HHHHHHHHH
Confidence 887776654
No 207
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=24.15 E-value=7.5e+02 Score=24.92 Aligned_cols=31 Identities=39% Similarity=0.393 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
...+++.++.|-+.|+|++..|+.++.....
T Consensus 592 ~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 592 LELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567778888889999999999999987643
No 208
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.80 E-value=3.9e+02 Score=21.51 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 121 S~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
+-.|+..++..+...+..+|.--..+-..++..++.....|..+-..|+.++
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666544443334444444444444444444444433
No 209
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=23.62 E-value=4.3e+02 Score=25.21 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHH
Q 046479 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEEN 165 (228)
Q Consensus 121 S~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN 165 (228)
|+-|+..+...+.+.+..+++|.+++ ..+|+.|..|...|++.-
T Consensus 421 sl~d~aK~~~~myd~~~~l~~~q~~l-e~qI~~Le~kl~~l~~~l 464 (489)
T KOG3684|consen 421 SLVDLAKTQNDMYDLLQELHSRQEEL-EKQIDTLESKLEALTASL 464 (489)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665543 445555555555544443
No 210
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=23.53 E-value=12 Score=27.98 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=36.6
Q ss_pred ccceeee-cCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 5 KMVLERI-QNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 5 Ki~ikrI-en~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
++++|.+ +|.+|=.|+|.||-.|+-+ +=...+|..-.|+- .-.+++++.|...-
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq---------------fEi~n~G~~RI~gY-k~se~~~~~f~slG 73 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ---------------FEIRNKGEFRIFGY-KMSEEIIKKFTSLG 73 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE---------------EEEETTSEEEEEEE-S--HHHHHHHHHTT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEE-cCCHHHHHHHHhcC
Confidence 5778776 7888999999999999632 22357887666665 23678888887653
No 211
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=23.52 E-value=1.1e+02 Score=25.12 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=40.0
Q ss_pred cchhheee--ecCCccccccccc---------chhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 046479 41 AEVALIIF--SSHGMLFEFGSNF---------GMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQ 109 (228)
Q Consensus 41 aeValIvf--S~~Gkl~ef~s~~---------s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~ 109 (228)
+|.+||+. ||+||=|-+-+.. +...++.||....... .....-..+...|+.++..+.+..
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~a--------~~~~~~~~~~r~lr~~it~~rR~i 167 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAALA--------EAARAERRALRRLRRRITLLRRDI 167 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888 6899877643321 3667888887764321 112344555666777777776666
Q ss_pred hhh
Q 046479 110 RHF 112 (228)
Q Consensus 110 r~l 112 (228)
+++
T Consensus 168 ~~l 170 (177)
T PF03428_consen 168 RKL 170 (177)
T ss_pred HHH
Confidence 554
No 212
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.38 E-value=7e+02 Score=24.29 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHHHHHHHH--HHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHH
Q 046479 90 ALFREILRL--RALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRK 143 (228)
Q Consensus 90 ~l~~E~~kL--k~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK 143 (228)
.|...+..| +.+++..+.....+...++. ++.++.+....++.-.+.++.-|
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik--~p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKKDIK--NPLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 34444444444444443333 45566666666666655555444
No 213
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=22.96 E-value=1.3e+02 Score=23.83 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=29.2
Q ss_pred HHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046479 132 LDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 132 Le~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k 171 (228)
|=.+++.=|..|.++ -.+|+.||.|...|.|--..|+++
T Consensus 97 iY~d~~aWk~hr~~I-D~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 97 IYQDPKAWKDHRLHI-DHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred hhcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555544 688999999999999999999875
No 214
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=22.93 E-value=3e+02 Score=19.81 Aligned_cols=51 Identities=24% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHH---HHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 117 LGTLGVKELQKLEK---QLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 117 L~~LS~~EL~~LE~---qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
.+..+..|...+.. +|..+|..+-.| ...|..+.+.|.+.|+.-+.++.+.
T Consensus 20 ~~e~~~~E~~~ins~LD~Lns~LD~LE~r--------nD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 20 DDEFDEEEYAAINSMLDQLNSCLDHLEQR--------NDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445445444443 444556655444 4566677888999999999988765
No 215
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=22.91 E-value=54 Score=30.26 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=28.1
Q ss_pred hhhhcccCcch--hheeeecCCccccccc--ccchhHHHHHHHhhccC
Q 046479 33 YELSLLCDAEV--ALIIFSSHGMLFEFGS--NFGMAKILERYRQYCYT 76 (228)
Q Consensus 33 ~ELSvLCdaeV--alIvfS~~Gkl~ef~s--~~s~~~ileRY~~~~~~ 76 (228)
+-|||+||-+| |||--..+|=-|+-|. -+++++.+..|+..|-.
T Consensus 367 yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SLe 414 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSLE 414 (464)
T ss_pred eEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhHH
Confidence 56899999988 4444445553332111 12588999999887654
No 216
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=22.69 E-value=4.6e+02 Score=21.96 Aligned_cols=71 Identities=25% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHH--hhhHHHHHHHHHHHHHhHHHH
Q 046479 89 EALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRK--TDLMRQHLETLQKKAHDLEEE 164 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK--~ql~~~~i~~LkkKe~~L~ee 164 (228)
..+..++.+++++++.+ ...|+..-.. ...+|..||......+.++-.-. ..-|..+|..++++...+.+.
T Consensus 146 ~~le~~l~~~k~~ie~v-N~~RK~~Q~~----~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 146 KRLEKELAKLKKEIEEV-NRERKRRQEE----AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 217
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.43 E-value=4.3e+02 Score=25.95 Aligned_cols=135 Identities=26% Similarity=0.337 Sum_probs=0.0
Q ss_pred HhhhhhhhhcccCcchhh-----eeeecCCccccccccc--chhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHH
Q 046479 28 LLKKAYELSLLCDAEVAL-----IIFSSHGMLFEFGSNF--GMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRA 100 (228)
Q Consensus 28 L~KKA~ELSvLCdaeVal-----IvfS~~Gkl~ef~s~~--s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~ 100 (228)
+.+|+.+| |-|++..+ +|=+...++-+..... -=..+++.|+......... ..+......++..++.
T Consensus 381 l~~k~~~l--L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~----~~e~~~~~~~ik~~r~ 454 (594)
T PF05667_consen 381 LKKKTVEL--LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNR----ESESKQKLQEIKELRE 454 (594)
T ss_pred HHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc----chHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHH-HHHHhhhHHHHHHHHHHH----------HHhHHHHHHHHH
Q 046479 101 LRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLS-RQRKTDLMRQHLETLQKK----------AHDLEEENKQLK 169 (228)
Q Consensus 101 kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~I-R~rK~ql~~~~i~~LkkK----------e~~L~eeN~~L~ 169 (228)
+++.+....+. --+...+|+..++..-+.+ |+-=++-+++=|...+|. -+.|+.+.+.|.
T Consensus 455 ~~k~~~~e~~~---------Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 455 EIKEIEEEIRQ---------KEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 046479 170 FKLEEAIR 177 (228)
Q Consensus 170 ~k~~~~~~ 177 (228)
.++.....
T Consensus 526 gkL~RtF~ 533 (594)
T PF05667_consen 526 GKLDRTFT 533 (594)
T ss_pred HHHHhHHH
No 218
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.34 E-value=1.1e+02 Score=21.43 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 046479 89 EALFREILRLRALRESLERSQ 109 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~ 109 (228)
+.+.....+|.++++.|++-.
T Consensus 45 ~~L~~~a~rm~eRI~tLE~IL 65 (75)
T TIGR02976 45 QELYAKADRLEERIDTLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467778889999999988743
No 219
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=22.24 E-value=5.8e+02 Score=26.29 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=12.7
Q ss_pred eeecCCccccccc--ccchhHHHHHH
Q 046479 47 IFSSHGMLFEFGS--NFGMAKILERY 70 (228)
Q Consensus 47 vfS~~Gkl~ef~s--~~s~~~ileRY 70 (228)
.|-+-|++-.|.+ |.....+++..
T Consensus 139 ~~~~q~~~~~~~~~~~~~~~~~~~~~ 164 (1179)
T TIGR02168 139 SIIEQGKISEIIEAKPEERRAIFEEA 164 (1179)
T ss_pred hheecccHHHHHcCCHHHHHHHHHHH
Confidence 3446677777773 23344444443
No 220
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.19 E-value=4.4e+02 Score=26.45 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 046479 90 ALFREILRLRALRESLERSQ 109 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~~ 109 (228)
.++.++..|+.++|.|+...
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776644
No 221
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=22.15 E-value=43 Score=28.66 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=18.5
Q ss_pred hcccCcchhheeeecCCcccc--ccc
Q 046479 36 SLLCDAEVALIIFSSHGMLFE--FGS 59 (228)
Q Consensus 36 SvLCdaeValIvfS~~Gkl~e--f~s 59 (228)
|+=.+-|.|.-+|||+|++|. |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 344567888899999999996 643
No 222
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=22.07 E-value=1.2e+02 Score=25.71 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=36.6
Q ss_pred hhhHhhh----hhhhhcccCcchhheeeecC---CcccccccccchhHHHHHHHhhc
Q 046479 25 RDGLLKK----AYELSLLCDAEVALIIFSSH---GMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 25 r~GL~KK----A~ELSvLCdaeValIvfS~~---Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
++-|+-| ..|++|=+|-++.|++.+|+ +....|++ ..++.|+..|+...
T Consensus 34 ~~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa-~pL~~vv~~~~~~I 89 (214)
T PF10491_consen 34 QTRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGA-APLENVVRNLKPVI 89 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecc-hhHHHHHHHHHHHH
Confidence 3455555 46899999999999999974 34445887 45999999987753
No 223
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.05 E-value=1.6e+02 Score=26.31 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 046479 117 LGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQL 168 (228)
Q Consensus 117 L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L 168 (228)
-.+||..|-..| .+||.||.||+ +.|+.|+.......+|-..|
T Consensus 8 p~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 8 PNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 356777665544 57999998875 67899988887777766555
No 224
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=21.92 E-value=31 Score=23.29 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=22.3
Q ss_pred HhhhhhHhhhhhhhhcccC-cchhheeeecCCcc
Q 046479 22 AKRRDGLLKKAYELSLLCD-AEVALIIFSSHGML 54 (228)
Q Consensus 22 sKRr~GL~KKA~ELSvLCd-aeValIvfS~~Gkl 54 (228)
..||.|.+.+ |.|+-+| .+=.+-|+|..|++
T Consensus 23 ~~RR~g~i~~--~vsi~~~~~~~ei~I~tD~GR~ 54 (63)
T PF04566_consen 23 NLRRSGKISK--EVSIVYDIREKEIRINTDAGRL 54 (63)
T ss_dssp HHHHTTSS-T--TSEEEEETTTTEEEEE-SSCEE
T ss_pred HHhhccCCcc--eeEEEEeccCCEEEEEccCCcc
Confidence 5788897665 8888887 46677888888875
No 225
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.91 E-value=8e+02 Score=24.88 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=11.3
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHH
Q 046479 142 RKTDLMRQHLETLQKKAHDLEEENK 166 (228)
Q Consensus 142 rK~ql~~~~i~~LkkKe~~L~eeN~ 166 (228)
|+.+.|..+|.+|+++......-|.
T Consensus 605 rrEd~~R~Ei~~LqrRlqaaE~R~e 629 (961)
T KOG4673|consen 605 RREDMFRGEIEDLQRRLQAAERRCE 629 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555544444333333
No 226
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=21.85 E-value=84 Score=19.76 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=20.5
Q ss_pred heeeecCCcccccccccchhHHHHHH
Q 046479 45 LIIFSSHGMLFEFGSNFGMAKILERY 70 (228)
Q Consensus 45 lIvfS~~Gkl~ef~s~~s~~~ileRY 70 (228)
+.||=|+|..++|+.+.++.++++..
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~ 26 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAI 26 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHH
Confidence 35888999999999867788877643
No 227
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.82 E-value=5.9e+02 Score=22.89 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 150 HLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 150 ~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
.+...-..++.+.++|..|+.++..
T Consensus 255 k~~~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 255 KMAQYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556688999999999999863
No 228
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.80 E-value=4.4e+02 Score=21.43 Aligned_cols=52 Identities=17% Similarity=0.342 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 122 VKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+.+|......|..+|..+... +-+..+|..|++....|-+.-+.+.++|.+.
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~h--q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~ 55 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQEH--QENQARIQQLRAEIEELDEQIRDILKQLKEA 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888777433 3345555555555555555555555555443
No 229
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.76 E-value=4.2e+02 Score=21.15 Aligned_cols=84 Identities=25% Similarity=0.254 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHH---------hhhHHHHHHHHHHHH
Q 046479 90 ALFREILRLRALRESLERSQRH--FLGEDLGTLGVKELQKLEKQLDKTLSLSRQRK---------TDLMRQHLETLQKKA 158 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~~r~--l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK---------~ql~~~~i~~LkkKe 158 (228)
.++..+..++..+..++...++ -+|++|.-..++.| .-.-..-...|.+|- ..--...+...+.|.
T Consensus 10 ~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqL---kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl 86 (177)
T PF13870_consen 10 KLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQL---KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKL 86 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666665554443 35766544444444 333333333343332 222345677788888
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 046479 159 HDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 159 ~~L~eeN~~L~~k~~~~~ 176 (228)
..+..++..++..+....
T Consensus 87 ~~~~~~~~~l~~~l~~~~ 104 (177)
T PF13870_consen 87 HFLSEELERLKQELKDRE 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888877543
No 230
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=21.68 E-value=1.9e+02 Score=21.15 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=43.0
Q ss_pred hhhhhcccCcchhhee-------eecCC---cccccccccchhHHHHHHHhhccCCCCCCCCCCcc-hHHHHHHHHHHHH
Q 046479 32 AYELSLLCDAEVALII-------FSSHG---MLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLE-PEALFREILRLRA 100 (228)
Q Consensus 32 A~ELSvLCdaeValIv-------fS~~G---kl~ef~s~~s~~~ileRY~~~~~~~~~~~~~~~~e-~q~l~~E~~kLk~ 100 (228)
..|||..|+++..+|. +.|.+ .-|.|.+ .--.++.++.+...+-. . +..-.. .-.+-+++..|+.
T Consensus 10 ~~Elc~~~gi~~~~l~eLve~GlIep~~~~~~~~~F~~--~~l~r~~~a~rL~~dl~-i-n~~gialvl~LLd~i~~Lr~ 85 (101)
T PRK10265 10 ITEFCLHTGVSEEELNEIVGLGVIEPREIQETTWVFDD--HAAIVVQRAVRLRHELA-L-DWPGIAVALTLLDEIAHLKQ 85 (101)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeecCCCCcccceECH--HHHHHHHHHHHHHHHcC-C-CHHHHHHHHHHHHHHHHHHH
Confidence 4689999999877663 33432 2234544 23344555555443211 1 100001 1367788888888
Q ss_pred HHHHHHHHhhhhc
Q 046479 101 LRESLERSQRHFL 113 (228)
Q Consensus 101 kie~Lq~~~r~l~ 113 (228)
++..|++..+.++
T Consensus 86 el~~L~~~l~~~~ 98 (101)
T PRK10265 86 ENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHh
Confidence 8888877665543
No 231
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.66 E-value=1.1e+02 Score=29.95 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046479 89 EALFREILRLRALRESLERS 108 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~ 108 (228)
|.++.|+.++..++|.+++.
T Consensus 103 qel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 34555555555555555443
No 232
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.66 E-value=2.8e+02 Score=19.14 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
..|..|+.+...+..+...|..++.
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 233
>PRK14127 cell division protein GpsB; Provisional
Probab=21.58 E-value=2.8e+02 Score=20.94 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
.+-+++.+|....-+++- +.++.|.+....|.++|..|+.++.+...
T Consensus 19 ~~RGYd~~EVD~FLd~V~---------------~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 19 SMRGYDQDEVDKFLDDVI---------------KDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CCCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777766655443 34555666666777777777777776543
No 234
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.58 E-value=5.6e+02 Score=22.52 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHH
Q 046479 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENK 166 (228)
Q Consensus 121 S~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~ 166 (228)
..-|+.++|..|..++..++..-. -+.+++..+..-|..|...-.
T Consensus 156 r~~e~~~iE~~l~~ai~~~~~~~~-~~~~~l~~l~~de~~Le~KIe 200 (267)
T PF10234_consen 156 RPLELNEIEKALKEAIKAVQQQLQ-QTQQQLNNLASDEANLEAKIE 200 (267)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 455777889999998888865532 224444444444444444333
No 235
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=21.52 E-value=3.5e+02 Score=20.74 Aligned_cols=54 Identities=9% Similarity=0.151 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+|++|+..+-......- .. ..-..++.++++++..+.+.|++--..|...+...
T Consensus 58 fsL~eI~~ll~~~~~~~-~~-~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~ 111 (131)
T cd04786 58 FSLDEIRQLLPADASNW-QH-DELLAALERKVADIEALEARLAQNKAQLLVLIDLI 111 (131)
T ss_pred CCHHHHHHHHhcccCCC-CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777654321110 00 11124667777888888877777777776666543
No 236
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.22 E-value=4.6e+02 Score=21.37 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
...+..|...|++||..|-...-
T Consensus 160 ~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 160 LNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888877765543
No 237
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.21 E-value=5.7e+02 Score=22.46 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046479 123 KELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRA 178 (228)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~~ 178 (228)
++...++.+|+.-...|-+- ..++.+++++...+..+-+.|..+|.+....
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~-----~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEI-----QSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 238
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=21.17 E-value=2e+02 Score=19.62 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
|..+..|+++++|++.|+-.-...+..+++.
T Consensus 2 q~~ms~l~eiqkKvrkLqsrAg~akm~LhDL 32 (71)
T COG5420 2 QVEMSSLEEIQKKVRKLQSRAGQAKMELHDL 32 (71)
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4567788999999999988777777666655
No 239
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=21.03 E-value=33 Score=25.04 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=20.7
Q ss_pred chhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 42 EVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 42 eValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
=|+||||+| .||.+..- ++-+.+-.|++..
T Consensus 16 vVaLlvfGP-~KLP~lar--~lGk~i~~fkk~~ 45 (90)
T PRK14857 16 VIALLVFGP-KKLPEIGR--SLGKTLKGFQEAS 45 (90)
T ss_pred HHHHHHcCc-hHHHHHHH--HHHHHHHHHHHHH
Confidence 368899998 67777765 3666666666643
No 240
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=20.92 E-value=2.9e+02 Score=19.05 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=25.3
Q ss_pred HHHHHHHHhhHHHH---HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 127 KLEKQLDKTLSLSR---QRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 127 ~LE~qLe~sL~~IR---~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
.||.+|..+|..+- .+.-+-..+....|+..--.-..+|..|+.++.
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~ 52 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVN 52 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46777777766653 334445555566666554444444444444443
No 241
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.87 E-value=6.6e+02 Score=23.04 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 123 KELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
++|+.--++|-..|-++|+ ---.+...+..|..-.+.+.|||..|.-++.+
T Consensus 102 ~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~ 152 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQCLQLQLDA 152 (401)
T ss_pred HHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4444444444444444444 11112233334444445555555555555443
No 242
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.63 E-value=83 Score=30.07 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
++|++|+++...|+++...|.+++.+.++
T Consensus 31 qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 38888888888888888888887766543
No 243
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.61 E-value=5.4e+02 Score=23.94 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+....|.++...|.++-..|..+++..
T Consensus 382 ~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 382 EKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444455555555555555555443
No 244
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=20.60 E-value=45 Score=19.38 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=13.7
Q ss_pred chhheeeecCCcccccccc
Q 046479 42 EVALIIFSSHGMLFEFGSN 60 (228)
Q Consensus 42 eValIvfS~~Gkl~ef~s~ 60 (228)
.-.-..|||+||-..|+|.
T Consensus 10 ~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEE
T ss_pred cccCEEEecCCCEEEEEec
Confidence 3445789999998889873
No 245
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=20.48 E-value=54 Score=23.10 Aligned_cols=31 Identities=10% Similarity=0.269 Sum_probs=24.8
Q ss_pred hhheeeecCCcccccccccchhHHHHHHHhhccC
Q 046479 43 VALIIFSSHGMLFEFGSNFGMAKILERYRQYCYT 76 (228)
Q Consensus 43 ValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~ 76 (228)
|+|+||.| +||++.+. ++-+.+.-|++....
T Consensus 15 IvlLlFG~-~KLPel~r--~lGk~ik~FKk~~~e 45 (75)
T PRK04561 15 IVLLVFGT-KRLTSGAK--DLGSAVKEFKKGMHD 45 (75)
T ss_pred HHHHHhCC-cchHHHHH--HHHHHHHHHHHHhcc
Confidence 88999997 49999876 588888888876544
No 246
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.37 E-value=7.2e+02 Score=26.93 Aligned_cols=108 Identities=23% Similarity=0.302 Sum_probs=61.2
Q ss_pred HHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccc-cchhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHH
Q 046479 21 FAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN-FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLR 99 (228)
Q Consensus 21 FsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~-~s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk 99 (228)
..+|..-|+.+|.||-. +|-+-.|.|. .+|++.|+.-+..-.+. +....++..+-.....|+
T Consensus 1176 L~~rt~rl~~~A~~l~~-------------tGv~gay~s~f~~me~kl~~ir~il~~~----svs~~~i~~l~~~~~~lr 1238 (1758)
T KOG0994|consen 1176 LALRTHRLINRAKELKQ-------------TGVLGAYASRFLDMEEKLEEIRAILSAP----SVSAEDIAQLASATESLR 1238 (1758)
T ss_pred HHHHHHHHHHHHHHhhh-------------ccCchhhHhHHHHHHHHHHHHHHHhcCC----CccHHHHHHHHHHHHHHH
Confidence 35677888899998853 3444456652 25888888877764332 223334445555555555
Q ss_pred HHHHHHHHHhhhhcCCCC------CCCCHHHHHHHHHHHHHhhHHHHHHHhhh
Q 046479 100 ALRESLERSQRHFLGEDL------GTLGVKELQKLEKQLDKTLSLSRQRKTDL 146 (228)
Q Consensus 100 ~kie~Lq~~~r~l~Ge~L------~~LS~~EL~~LE~qLe~sL~~IR~rK~ql 146 (228)
.++..+...+... -++| .+++-+||..|+...+.-+.-++.-+.++
T Consensus 1239 ~~l~~~~e~L~~~-E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1239 RQLQALTEDLPQE-EETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred HHHHHHHhhhhhh-hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544433222211 1223 24566888888887776666665555443
No 247
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=20.33 E-value=3.6e+02 Score=20.46 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
+++++|+..+-..++..-. .. -..++.+.+..+..+...|..--..|...+
T Consensus 60 G~~L~eI~~ll~~~~~~~~--~~-~~~~~~~~~~~i~~ki~~L~~l~~~L~~l~ 110 (120)
T TIGR02054 60 GIGLGELARLCRALDAANG--DD-TAACLAVLRQLVEARREALAALEVQLAAMP 110 (120)
T ss_pred CCCHHHHHHHHHhhccCCH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888877655544311 00 112233444444444444444444444433
No 248
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=20.11 E-value=1.6e+02 Score=22.94 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCH
Q 046479 89 EALFREILRLRALRESLERSQRHFLGEDLGTLGV 122 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~ 122 (228)
..|+.++++.++.+..+..+++++.|-|-+..-.
T Consensus 6 ~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp 39 (134)
T PF04697_consen 6 RTLQAQLEKAKESLKNVDENIKKLTGRDPSENRP 39 (134)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCc
Confidence 4788999999999999999999999998665543
No 249
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=20.09 E-value=1.7e+02 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhh
Q 046479 122 VKELQKLEKQLDKTLSLSRQRKTDL 146 (228)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql 146 (228)
-.|+..+|+.|+.....+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888888888887654
Done!