Query 046479
Match_columns 228
No_of_seqs 262 out of 1676
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 22:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.2E-40 4E-45 235.6 3.5 73 2-75 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 5.8E-40 2E-44 237.7 3.8 76 2-78 1-76 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 2.5E-38 8.6E-43 232.8 2.7 73 1-74 16-88 (100)
4 1hbx_A SRF, serum response fac 100.0 5.6E-38 1.9E-42 228.1 1.1 70 1-71 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 1.4E-37 4.8E-42 230.2 2.1 77 1-78 9-90 (103)
6 2jee_A YIIU; FTSZ, septum, coi 90.9 1.4 4.7E-05 30.6 7.6 44 120-168 3-46 (81)
7 2w6a_A ARF GTPase-activating p 84.9 6 0.0002 25.6 8.2 53 118-170 8-62 (63)
8 3nmd_A CGMP dependent protein 84.0 7.5 0.00026 26.2 7.8 53 116-175 14-66 (72)
9 2oqq_A Transcription factor HY 81.8 4.5 0.00015 24.3 5.3 27 147-173 15-41 (42)
10 3hnw_A Uncharacterized protein 81.0 16 0.00054 27.6 11.5 71 90-174 65-135 (138)
11 1dip_A Delta-sleep-inducing pe 79.0 2.8 9.5E-05 28.4 4.2 26 145-170 18-43 (78)
12 2v71_A Nuclear distribution pr 78.3 24 0.00082 28.2 10.8 26 150-175 89-114 (189)
13 3s9g_A Protein hexim1; cyclin 77.7 17 0.00057 26.0 9.8 83 55-174 8-90 (104)
14 2dgc_A Protein (GCN4); basic d 77.1 10 0.00034 24.7 6.5 37 136-176 21-57 (63)
15 1j1d_C Troponin I, TNI; THIN f 75.5 24 0.00081 26.6 9.4 31 116-146 54-84 (133)
16 1dh3_A Transcription factor CR 74.9 13 0.00043 23.5 6.4 35 138-176 15-49 (55)
17 2dfs_A Myosin-5A; myosin-V, in 73.6 26 0.0009 35.2 11.5 85 90-176 957-1043(1080)
18 2yy0_A C-MYC-binding protein; 72.7 6 0.0002 25.0 4.3 27 147-173 24-50 (53)
19 3hnw_A Uncharacterized protein 72.7 27 0.00094 26.3 8.9 53 124-176 76-130 (138)
20 1t2k_D Cyclic-AMP-dependent tr 69.9 19 0.00063 23.0 6.4 35 138-176 15-49 (61)
21 2wt7_A Proto-oncogene protein 69.7 18 0.00063 23.3 6.4 34 139-176 17-50 (63)
22 1ci6_A Transcription factor AT 69.3 20 0.00069 23.2 6.6 30 148-177 22-51 (63)
23 1jnm_A Proto-oncogene C-JUN; B 64.3 25 0.00087 22.5 6.6 37 138-178 15-51 (62)
24 1j1e_C Troponin I, TNI; THIN f 64.2 39 0.0013 26.7 8.4 31 116-146 54-84 (180)
25 2zqm_A Prefoldin beta subunit 63.4 37 0.0013 24.0 8.0 44 132-176 68-111 (117)
26 1a93_B MAX protein, coiled coi 61.8 11 0.00037 21.6 3.4 26 141-166 6-31 (34)
27 3gp4_A Transcriptional regulat 59.9 51 0.0018 24.6 8.8 56 119-175 59-114 (142)
28 1go4_E MAD1 (mitotic arrest de 59.5 45 0.0015 23.8 7.4 18 155-172 74-91 (100)
29 2aze_A Transcription factor DP 59.2 35 0.0012 26.3 7.1 48 121-170 3-50 (155)
30 2l16_A SEC-independent protein 57.6 0.85 2.9E-05 31.4 -2.1 38 34-76 9-46 (78)
31 2l5g_B Putative uncharacterize 57.4 26 0.00088 21.0 4.7 18 148-165 22-39 (42)
32 2xus_A Breast cancer metastasi 55.7 33 0.0011 21.2 5.2 33 122-161 12-44 (49)
33 1gd2_E Transcription factor PA 54.2 45 0.0015 22.1 6.5 41 135-175 19-62 (70)
34 2oxj_A Hybrid alpha/beta pepti 53.7 17 0.00056 20.7 3.3 24 151-174 3-26 (34)
35 1fxk_A Prefoldin; archaeal pro 53.0 55 0.0019 22.7 7.8 27 148-174 78-104 (107)
36 3na7_A HP0958; flagellar bioge 52.0 84 0.0029 25.7 9.0 53 121-173 88-142 (256)
37 3oja_B Anopheles plasmodium-re 51.8 1.4E+02 0.0047 27.1 14.4 30 147-176 549-578 (597)
38 2l5g_A GPS2 protein, G protein 50.3 21 0.00073 20.7 3.4 22 148-169 14-35 (38)
39 3gpv_A Transcriptional regulat 50.1 77 0.0026 23.7 8.1 56 119-175 73-128 (148)
40 1gk7_A Vimentin; intermediate 49.2 37 0.0013 19.9 4.5 28 146-173 10-37 (39)
41 1q08_A Zn(II)-responsive regul 49.1 60 0.002 22.1 6.7 55 119-174 16-71 (99)
42 1p9i_A Cortexillin I/GCN4 hybr 48.9 19 0.00067 19.4 2.9 20 156-175 6-25 (31)
43 2jee_A YIIU; FTSZ, septum, coi 48.1 44 0.0015 22.9 5.4 33 142-174 13-45 (81)
44 3m48_A General control protein 47.7 19 0.00066 20.3 2.9 25 151-175 2-26 (33)
45 1ytz_T Troponin T; muscle, THI 47.7 67 0.0023 23.1 6.7 31 116-146 38-68 (107)
46 1m2d_A [2Fe-2S] ferredoxin; th 46.2 10 0.00034 27.2 2.0 33 38-71 58-90 (110)
47 2w6b_A RHO guanine nucleotide 44.8 57 0.0019 20.6 5.3 33 146-178 7-39 (56)
48 1j1d_B Troponin T, TNT; THIN f 43.7 70 0.0024 23.0 6.2 31 116-146 38-68 (106)
49 2v66_B Nuclear distribution pr 43.3 92 0.0031 22.6 10.0 33 145-177 73-105 (111)
50 1dip_A Delta-sleep-inducing pe 43.0 12 0.00041 25.2 1.9 33 143-175 6-41 (78)
51 1ci6_A Transcription factor AT 42.3 65 0.0022 20.6 5.4 28 146-173 34-61 (63)
52 1kd8_B GABH BLL, GCN4 acid bas 42.0 32 0.0011 19.8 3.3 21 152-172 4-24 (36)
53 1deb_A APC protein, adenomatou 41.4 43 0.0015 20.8 4.0 25 152-176 6-30 (54)
54 4gfh_A DNA topoisomerase 2; to 41.1 1.9E+02 0.0066 29.4 11.1 44 25-73 957-1000(1177)
55 3c3f_A Alpha/beta peptide with 40.5 36 0.0012 19.3 3.3 24 151-174 3-26 (34)
56 1hjb_A Ccaat/enhancer binding 40.3 89 0.003 21.6 6.8 27 151-177 38-64 (87)
57 1t2k_D Cyclic-AMP-dependent tr 39.4 67 0.0023 20.3 5.1 28 145-172 32-59 (61)
58 3aei_A Prefoldin beta subunit 38.9 54 0.0019 22.3 4.6 26 145-170 71-96 (99)
59 1go4_E MAD1 (mitotic arrest de 38.5 50 0.0017 23.5 4.7 29 149-177 12-40 (100)
60 1m1j_C Fibrinogen gamma chain; 37.8 54 0.0018 29.3 5.9 57 50-113 11-68 (409)
61 3hvz_A Uncharacterized protein 37.7 17 0.00057 24.6 2.0 25 45-69 8-32 (78)
62 1am9_A Srebp-1A, protein (ster 37.5 64 0.0022 21.7 5.0 28 149-176 50-77 (82)
63 1g6u_A Domain swapped dimer; d 36.2 67 0.0023 18.9 4.3 22 118-139 15-36 (48)
64 2rpa_A Katanin P60 ATPase-cont 36.2 7.2 0.00025 26.7 -0.1 57 29-105 16-72 (78)
65 1z56_A Ligase interacting fact 34.5 19 0.00065 29.8 2.1 60 9-73 117-176 (246)
66 3q4f_C DNA repair protein XRCC 34.3 42 0.0014 26.6 4.0 23 149-171 161-183 (186)
67 1gu4_A CAAT/enhancer binding p 34.2 1.1E+02 0.0037 20.7 6.8 28 151-178 38-65 (78)
68 3c3g_A Alpha/beta peptide with 33.9 65 0.0022 18.1 3.9 23 152-174 3-25 (33)
69 3twe_A Alpha4H; unknown functi 33.8 53 0.0018 17.1 3.5 22 89-110 4-25 (27)
70 3m9b_A Proteasome-associated A 32.9 67 0.0023 26.7 5.2 40 124-168 55-94 (251)
71 2zxx_A Geminin; coiled-coil, c 32.8 68 0.0023 21.8 4.4 30 145-174 37-66 (79)
72 1ytz_I Troponin I; muscle, THI 32.0 1.6E+02 0.0054 23.2 7.1 29 116-145 52-80 (182)
73 2bni_A General control protein 32.0 53 0.0018 18.6 3.1 23 151-173 3-25 (34)
74 1deq_A Fibrinogen (alpha chain 31.6 2.7E+02 0.0092 24.5 11.6 13 59-71 50-62 (390)
75 2v71_A Nuclear distribution pr 31.3 2E+02 0.0067 22.8 11.6 37 141-177 122-158 (189)
76 1t6f_A Geminin; coiled-coil, c 31.1 78 0.0027 18.2 4.1 24 146-169 11-34 (37)
77 2p22_C Protein SRN2; endosome, 29.3 1.8E+02 0.006 23.0 7.1 25 149-173 86-110 (192)
78 3w03_C DNA repair protein XRCC 28.4 96 0.0033 24.5 5.3 29 147-175 150-178 (184)
79 3oja_B Anopheles plasmodium-re 27.8 3.3E+02 0.011 24.4 13.5 52 123-175 505-556 (597)
80 4fi5_A Nucleoprotein; structur 26.6 1.8E+02 0.0063 21.0 7.2 60 116-175 18-88 (113)
81 1wlq_A Geminin; coiled-coil; 2 26.0 78 0.0027 21.7 3.8 25 147-171 43-67 (83)
82 3nrf_A APAG protein; structura 25.7 4 0.00014 29.6 -3.0 43 12-59 22-64 (106)
83 1uii_A Geminin; human, DNA rep 25.6 1.6E+02 0.0055 20.1 5.3 25 147-171 51-75 (83)
84 1nkp_B MAX protein, MYC proto- 25.1 1.2E+02 0.004 20.2 4.7 25 149-173 54-78 (83)
85 1ryp_E 20S proteasome; multica 24.5 18 0.00063 29.3 0.4 15 44-58 3-19 (242)
86 1uo4_A General control protein 24.4 87 0.003 17.7 3.1 24 151-174 3-26 (34)
87 3h4p_A Proteasome subunit alph 24.4 19 0.00063 30.0 0.4 19 41-59 12-32 (264)
88 1m1j_B Fibrinogen beta chain; 23.8 4E+02 0.014 24.0 11.3 50 125-174 144-193 (464)
89 3nzj_F Proteasome component C1 23.7 21 0.00071 30.2 0.6 20 37-56 4-23 (288)
90 1kd8_A GABH AIV, GCN4 acid bas 23.7 93 0.0032 17.8 3.1 18 154-171 6-23 (36)
91 2kmm_A Guanosine-3',5'-BIS(dip 23.5 49 0.0017 21.0 2.4 26 45-70 3-28 (73)
92 2jo8_A Serine/threonine-protei 23.5 66 0.0023 20.0 2.7 17 116-132 6-22 (51)
93 2ky6_A Mediator of RNA polymer 23.1 43 0.0015 26.1 2.2 38 36-73 116-160 (166)
94 1nlw_A MAD protein, MAX dimeri 22.8 1.7E+02 0.0057 19.6 5.0 24 150-173 48-71 (80)
95 1ryp_D 20S proteasome; multica 22.7 20 0.00069 29.0 0.3 17 42-58 3-21 (241)
96 2hy6_A General control protein 22.6 99 0.0034 17.5 3.1 22 152-173 4-25 (34)
97 3thf_A Protein shroom; coiled- 22.6 1.7E+02 0.0057 23.3 5.6 36 137-176 11-46 (190)
98 2auv_A Potential NAD-reducing 22.4 34 0.0012 22.9 1.4 29 39-70 57-85 (85)
99 1q06_A Transcriptional regulat 22.1 2.3E+02 0.0079 20.5 6.7 53 119-172 57-109 (135)
100 1nkp_A C-MYC, MYC proto-oncoge 21.9 1.6E+02 0.0054 20.1 4.9 24 152-175 62-85 (88)
101 1i84_S Smooth muscle myosin he 21.7 6.2E+02 0.021 25.4 11.2 17 90-106 861-877 (1184)
102 1ryp_B 20S proteasome; multica 21.5 23 0.0008 28.9 0.5 17 42-58 6-24 (250)
103 1ryp_A 20S proteasome; multica 21.0 25 0.00086 28.5 0.6 17 42-58 4-22 (243)
104 1iru_B 20S proteasome; cell cy 20.7 24 0.00082 28.4 0.4 17 42-58 6-24 (233)
105 1iru_G 20S proteasome; cell cy 20.3 27 0.00092 28.6 0.6 19 40-58 6-26 (254)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.2e-40 Score=235.63 Aligned_cols=73 Identities=53% Similarity=0.871 Sum_probs=69.6
Q ss_pred CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhcc
Q 046479 2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCY 75 (228)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~ 75 (228)
||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+| ++|++||+||+.++.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s-~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC-CCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999998 579999999998764
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=5.8e-40 Score=237.65 Aligned_cols=76 Identities=51% Similarity=0.843 Sum_probs=72.8
Q ss_pred CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCCC
Q 046479 2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQ 78 (228)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~ 78 (228)
||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+| ++|..||+||++++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999 679999999999876544
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=2.5e-38 Score=232.83 Aligned_cols=73 Identities=33% Similarity=0.578 Sum_probs=69.8
Q ss_pred CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
|||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+||+|+|+| +++..||++|....
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-ps~~~il~r~~G~~ 88 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEGRN 88 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC-CCHHHHHHHhhCCc
Confidence 89999999999999999999999999999999999999999999999999999999999 57999999997543
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=5.6e-38 Score=228.13 Aligned_cols=70 Identities=37% Similarity=0.616 Sum_probs=67.8
Q ss_pred CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHH
Q 046479 1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYR 71 (228)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~ 71 (228)
|||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+| ++|..+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s-~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC-GGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC-CCHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999 67999999774
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=1.4e-37 Score=230.23 Aligned_cols=77 Identities=38% Similarity=0.626 Sum_probs=70.9
Q ss_pred CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHH-----HHhhcc
Q 046479 1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILER-----YRQYCY 75 (228)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileR-----Y~~~~~ 75 (228)
|||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+| ++|..||++ |.+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-~~~~~vi~~~~Gk~l~~~c~ 87 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSETGKALIQTCL 87 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC-GGGGGGTSSHHHHHHHHHTT
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC-ccHHHHHHhhhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999 679999997 556554
Q ss_pred CCC
Q 046479 76 TSQ 78 (228)
Q Consensus 76 ~~~ 78 (228)
...
T Consensus 88 ~~~ 90 (103)
T 1k6o_B 88 NSP 90 (103)
T ss_dssp CC-
T ss_pred cCC
Confidence 433
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.88 E-value=1.4 Score=30.59 Aligned_cols=44 Identities=20% Similarity=0.444 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 046479 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQL 168 (228)
Q Consensus 120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L 168 (228)
+|++=|.+||..+..++..| +++.-+|++||.|-..|.++|..+
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999887 566677788888777766666553
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=84.87 E-value=6 Score=25.58 Aligned_cols=53 Identities=28% Similarity=0.439 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhhHHHHH--HHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 046479 118 GTLGVKELQKLEKQLDKTLSLSRQ--RKTDLMRQHLETLQKKAHDLEEENKQLKF 170 (228)
Q Consensus 118 ~~LS~~EL~~LE~qLe~sL~~IR~--rK~ql~~~~i~~LkkKe~~L~eeN~~L~~ 170 (228)
++.++.|.-++..-|-.+=.+|.. +-+.-+.+++.-+|++.+.|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 567788888887777777666642 22445678888999999999999999874
No 8
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.96 E-value=7.5 Score=26.20 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
.+++++. +.+|+..|......||.+. +.|.+|.+......++.+.|+.++...
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd-----~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRD-----ALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 8888888999999998874 457788888888888888888887654
No 9
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=81.76 E-value=4.5 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+.....+|..+...|+.||..|++.+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 456678889999999999999998763
No 10
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.03 E-value=16 Score=27.65 Aligned_cols=71 Identities=13% Similarity=0.224 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 046479 90 ALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLK 169 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~ 169 (228)
+...|+.+++.+++.|+.....+ -+|+..|-..|...-..+.. ...++++|+++...|++++..|.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~e~-----~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKAES-----SAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888777655544 45666666655554433332 34556677777777777777776
Q ss_pred HHHHH
Q 046479 170 FKLEE 174 (228)
Q Consensus 170 ~k~~~ 174 (228)
.++.+
T Consensus 131 ~~~~~ 135 (138)
T 3hnw_A 131 TELND 135 (138)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65543
No 11
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.98 E-value=2.8 Score=28.37 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKF 170 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~ 170 (228)
.++.++|.+|..+...|+.||..|+.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777754
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.33 E-value=24 Score=28.17 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 150 HLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 150 ~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
++..|++....|.+.+..|..++.+.
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666667777776666543
No 13
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.69 E-value=17 Score=25.97 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=51.9
Q ss_pred cccccccchhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHH
Q 046479 55 FEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDK 134 (228)
Q Consensus 55 ~ef~s~~s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~ 134 (228)
-+|-+ -....+.++|..-+-....+ +.+-+||..|.++++.++...+.+- .+..
T Consensus 8 eeFl~-KdFSe~YE~~h~ErL~~mSK--------qELIqEYl~LE~~~s~le~e~~rlr-------------~~~~---- 61 (104)
T 3s9g_A 8 SEFLQ-RDFSETYERYHTESLQNMSK--------QELIKEYLELEKSLSRMEDENNRLR-------------LESK---- 61 (104)
T ss_dssp -------CCHHHHHHHHHHHHHTSCH--------HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH----
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhccH--------HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhc----
Confidence 34666 45677888887654322211 5788899999999998877665432 1111
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 135 TLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 135 sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
-...+|..|..+...|..+|..|+.+-+.
T Consensus 62 -----------~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 62 -----------RLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------cchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11456778888888999999999876554
No 14
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=77.12 E-value=10 Score=24.74 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=28.7
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 136 LSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 136 L~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
-.+.|.|| .+.+.+|..+...|..+|..|..++....
T Consensus 21 ArrsR~RK----~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 21 ARRSRARK----LQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 46788999999999999999999887653
No 15
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=75.51 E-value=24 Score=26.61 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHhhh
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRKTDL 146 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql 146 (228)
+|+++|.++|+.+=..|-..+..+-+-|..+
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 7999999999999999999888887776543
No 16
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=74.85 E-value=13 Score=23.55 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=27.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 138 LSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 138 ~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
.-|.||. ..+++|..++..|..+|..|..++....
T Consensus 15 rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 15 ESRRKKK----EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 5578899999999999999999987754
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=73.57 E-value=26 Score=35.23 Aligned_cols=85 Identities=22% Similarity=0.198 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 046479 90 ALFREILRLRALRESLERSQRHFLG--EDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQ 167 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq~~~r~l~G--e~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~ 167 (228)
.+..|+.+|++.++.++.......- ..+.. =-+|+..|+.+++...+.-..... ...+.-++|+.|...|.++|..
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~-L~~e~~~l~~~~~~~~ke~~~lee-~~~~~~~~L~~kv~~L~~e~~~ 1034 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLS-LQEEIAKLRKELHQTQTEKKTIEE-WADKYKHETEQLVSELKEQNTL 1034 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666776666665553222110 00000 012333344444444433333222 1222336788899999999999
Q ss_pred HHHHHHHHH
Q 046479 168 LKFKLEEAI 176 (228)
Q Consensus 168 L~~k~~~~~ 176 (228)
|+.++.+..
T Consensus 1035 L~qq~~~l~ 1043 (1080)
T 2dfs_A 1035 LKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.73 E-value=6 Score=25.01 Aligned_cols=27 Identities=41% Similarity=0.562 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+..++++||.|...|.+++..|+.++.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778999999999999999988875
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.67 E-value=27 Score=26.28 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 124 ELQKLEKQLDKTLSLSRQRKTDLMR--QHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~--~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
+...|+.+++..-+.+-+-|.++.. .+++.+++....|.+++..|.+++...+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777766666666766654 4556677777777777777777776554
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=69.87 E-value=19 Score=23.04 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=26.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 138 LSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 138 ~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
+-|.||. +.+.+|+.+...|..+|..|..++....
T Consensus 15 k~R~rKk----~~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 15 RSRQKRK----VWVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455553 5578899999999999999988887654
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=69.74 E-value=18 Score=23.30 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=26.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 139 SRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 139 IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
-|.|| .+.+.+|+.+...|..+|..|..++....
T Consensus 17 cR~rK----k~~~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 17 CRNRR----RELTDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555 35678999999999999999999887654
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=69.26 E-value=20 Score=23.17 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 148 RQHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 148 ~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
.+.++.|..+...|..+|..|..++.....
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888776543
No 23
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=64.30 E-value=25 Score=22.48 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=28.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046479 138 LSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRA 178 (228)
Q Consensus 138 ~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~~ 178 (228)
+-|.|| .+.+.+|..+...|..+|..|..++......
T Consensus 15 k~R~rK----k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 15 KSRKRK----LERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 3668899999999999999999998876443
No 24
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=64.22 E-value=39 Score=26.71 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHhhh
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRKTDL 146 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql 146 (228)
+|++||.++|+.+=..|-..+..+-+-|.-+
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDl 84 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8899999999999999999998887777654
No 25
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=63.37 E-value=37 Score=24.05 Aligned_cols=44 Identities=23% Similarity=0.411 Sum_probs=30.3
Q ss_pred HHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 132 LDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 132 Le~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
++.++..+..++..+ ...|..|.++...+.++-..|+.++.+..
T Consensus 68 ~~ea~~~L~~~~e~i-e~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 68 KDKAVAELKEKIETL-EVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444333 67788888888888888888888887653
No 26
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=61.81 E-value=11 Score=21.61 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=15.9
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHHHH
Q 046479 141 QRKTDLMRQHLETLQKKAHDLEEENK 166 (228)
Q Consensus 141 ~rK~ql~~~~i~~LkkKe~~L~eeN~ 166 (228)
.||++-....|++|+++-..|.++-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 35666666667777766555555543
No 27
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=59.93 E-value=51 Score=24.56 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
++|++|+..+-...+..-..+..+ .+++.+++..+.++...|+.....|..++...
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999988877665443333333 35677778888888888888777777776654
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.50 E-value=45 Score=23.79 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=8.8
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 046479 155 QKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 155 kkKe~~L~eeN~~L~~k~ 172 (228)
++....|+.|+..|+.++
T Consensus 74 ~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 74 REDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444555555555544
No 29
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=59.23 E-value=35 Score=26.30 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 046479 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKF 170 (228)
Q Consensus 121 S~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~ 170 (228)
|+.|.+.||..-...+.+|+.++.+| .++...+.--+.|.+-|+.+..
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999899998776554 3344444445677777777653
No 30
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=57.57 E-value=0.85 Score=31.44 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=27.3
Q ss_pred hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccC
Q 046479 34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYT 76 (228)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~ 76 (228)
||-|. +=||||||+| +||++... ++-+.+..|++....
T Consensus 9 ElliI--lvVaLlvfGp-kkLP~l~r--~lGk~ir~fK~~~~~ 46 (78)
T 2l16_A 9 GLILI--FVIALIIFGP-SKLPEIGR--AAGRTLLEFKSATKS 46 (78)
T ss_dssp HHHHH--HHHHHHHSCT-TTHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHhheeCc-cHhHHHHH--HHHHHHHHHHHHHHH
Confidence 44444 2389999998 69999876 477778888776543
No 31
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=57.42 E-value=26 Score=20.96 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 046479 148 RQHLETLQKKAHDLEEEN 165 (228)
Q Consensus 148 ~~~i~~LkkKe~~L~eeN 165 (228)
.++|.+||+|.+.|.+.-
T Consensus 22 e~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 22 EQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 456889999988887753
No 32
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=55.65 E-value=33 Score=21.23 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhH
Q 046479 122 VKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDL 161 (228)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L 161 (228)
+++|..||.+. -.-|.|++.+.|..++++...+
T Consensus 12 ld~l~~LEkqF-------~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQF-------SELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777554 3457888888888888876554
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=54.15 E-value=45 Score=22.13 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=21.9
Q ss_pred hhHHHHHHHhhhH---HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 135 TLSLSRQRKTDLM---RQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 135 sL~~IR~rK~ql~---~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+=...|.||.+-+ ..++.+|...-..|..+|..|+.++...
T Consensus 19 AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 19 AQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566665432 2344445444445566666666665543
No 34
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=53.69 E-value=17 Score=20.71 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
+.+|..|+..|..+|..|..++..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 566777777777777777776654
No 35
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.96 E-value=55 Score=22.74 Aligned_cols=27 Identities=7% Similarity=0.321 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 148 RQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 148 ~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
...|+.|.++...+..+-..|+.++.+
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888887777777776643
No 36
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.98 E-value=84 Score=25.71 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHhhh--HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 121 GVKELQKLEKQLDKTLSLSRQRKTDL--MRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 121 S~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+.+|+..|...++..-.++...-.++ ++++++.++.....+.+.-..+...+.
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999887777776554443 235555555555444444444444443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.79 E-value=1.4e+02 Score=27.05 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
+..+++..+++...+.+++..++.++.+..
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666666655543
No 38
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.32 E-value=21 Score=20.73 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 046479 148 RQHLETLQKKAHDLEEENKQLK 169 (228)
Q Consensus 148 ~~~i~~LkkKe~~L~eeN~~L~ 169 (228)
.+||..|+.|...|.+|.-+|-
T Consensus 14 keQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888877776653
No 39
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=50.14 E-value=77 Score=23.66 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
++|++|+..+-...+..-..+..+ .+++.+++..+.++...|+.....|..++...
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~~-~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILHR-LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhhhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999988876554433333222 35677888888888888888888887777654
No 40
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=49.18 E-value=37 Score=19.88 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 146 LMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 146 l~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
-+.+.+...=.|++.|..+|+.|..++.
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666788899999999988764
No 41
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=49.11 E-value=60 Score=22.08 Aligned_cols=55 Identities=9% Similarity=0.192 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHhhH-HHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLS-LSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~-~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
++|++|+..+-...+..-. .. ..-..++.+++..+.++...|+..-..|...+..
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999988654432111 11 1223567777778888877777777777666543
No 42
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=48.89 E-value=19 Score=19.38 Aligned_cols=20 Identities=55% Similarity=0.547 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 046479 156 KKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 156 kKe~~L~eeN~~L~~k~~~~ 175 (228)
.-...|..+|++|+.++++.
T Consensus 6 allasleaenkqlkakveel 25 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33567888899998888774
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.08 E-value=44 Score=22.90 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=24.5
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 142 RKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 142 rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
.|.+-..+.|.-||.....|.++|..|..+..+
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777888888888888888888777665
No 44
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=47.73 E-value=19 Score=20.33 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=17.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+.+|..|+..|..+|..|..++...
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566777778888888887776543
No 45
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=47.66 E-value=67 Score=23.11 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHhhh
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRKTDL 146 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql 146 (228)
+|++||.++|+.+=..|-..+..+-+-|.-+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8899999999999999998888887776543
No 46
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=46.17 E-value=10 Score=27.15 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=24.8
Q ss_pred ccCcchhheeeecCCcccccccccchhHHHHHHH
Q 046479 38 LCDAEVALIIFSSHGMLFEFGSNFGMAKILERYR 71 (228)
Q Consensus 38 LCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~ 71 (228)
.|+..-.++|+ |+|..|...++..+.+||+.|.
T Consensus 58 ~C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l 90 (110)
T 1m2d_A 58 ASMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHL 90 (110)
T ss_dssp CGGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTT
T ss_pred ccCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHH
Confidence 36555555555 8898888888778999999874
No 47
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=44.77 E-value=57 Score=20.59 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046479 146 LMRQHLETLQKKAHDLEEENKQLKFKLEEAIRA 178 (228)
Q Consensus 146 l~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~~ 178 (228)
-+.+-+-.|+-.+..|+.+|+.|.+-+++..++
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkA 39 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQRA 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777778888888888877765543
No 48
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=43.67 E-value=70 Score=23.00 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHhhh
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRKTDL 146 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql 146 (228)
+|++||.++|+.+=..|-..+..+-+-|.-+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 7899999999999999999988887777544
No 49
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=43.34 E-value=92 Score=22.57 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
.....+++++..|-....|.|..|...+.+...
T Consensus 73 R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~ 105 (111)
T 2v66_B 73 RATIVSLEDFEQRLNQAIERNAFLESELDEKES 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678899999999999999999999987653
No 50
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=43.03 E-value=12 Score=25.24 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=26.2
Q ss_pred HhhhHH---HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 143 KTDLMR---QHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 143 K~ql~~---~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
|++||. ++.+-||.+...|.+.|..|..+-.-.
T Consensus 6 KtHLm~AVREEVevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 6 KNHLMYAVREEVEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp TTGGGGTCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445443 789999999999999999998875443
No 51
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.34 E-value=65 Score=20.64 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 146 LMRQHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 146 l~~~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
-+......|+.+...|..|+..|+.-+.
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666667777777665543
No 52
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.05 E-value=32 Score=19.79 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=9.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 046479 152 ETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 152 ~~LkkKe~~L~eeN~~L~~k~ 172 (228)
.+|..|+..|..+|..|..++
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHH
Confidence 344444444444444444433
No 53
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=41.44 E-value=43 Score=20.82 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 152 ETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 152 ~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
++|-+.+..|..||..|+++++++.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 4455566677778888888877653
No 54
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=41.12 E-value=1.9e+02 Score=29.37 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=30.3
Q ss_pred hhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479 25 RDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 25 r~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
.++|+|+- .|.+-.++ .-+++|.++|++..|.| +++||+.|-.+
T Consensus 957 ~~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~~---l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 957 KIGFYERF-KLISPISL-MNMVAFDPHGKIKKYNS---VNEILSEFYYV 1000 (1177)
T ss_dssp HHCHHHHT-TCEEEECC-SCCEEECTTSCEEECSS---HHHHHHHHHHH
T ss_pred HHhHHHhc-cCcceecc-eEEEEEcCCCCccCcCC---HHHHHHHHHHH
Confidence 45666654 35443332 25789999999999977 78888887654
No 55
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=40.46 E-value=36 Score=19.30 Aligned_cols=24 Identities=4% Similarity=0.082 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
+.+|..|+..|..+|..|..++..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 455666666666667666665543
No 56
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=40.34 E-value=89 Score=21.57 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
..+++.+...|..+|..|+.++.....
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888888888888776544
No 57
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.36 E-value=67 Score=20.29 Aligned_cols=28 Identities=29% Similarity=0.182 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
..+..+...|+.....|.+++..|+..+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667788888888888888887654
No 58
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=38.85 E-value=54 Score=22.33 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKF 170 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~ 170 (228)
-.+..+|+.|+++|+...|+-..|+.
T Consensus 71 l~ykreie~l~~~ekeime~ls~l~~ 96 (99)
T 3aei_A 71 LVYKREIEKLKKREKEIMEELSKLRA 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45678899999999999998877653
No 59
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.52 E-value=50 Score=23.53 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
+++..|+++...|..||..|++.+.....
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888776543
No 60
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.82 E-value=54 Score=29.26 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=32.6
Q ss_pred cCCccccccc-ccchhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhc
Q 046479 50 SHGMLFEFGS-NFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFL 113 (228)
Q Consensus 50 ~~Gkl~ef~s-~~s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~ 113 (228)
++.++-.||. .-.+..+|.+|++.... .-.+.+..-.++..+...+..|-+.+....
T Consensus 11 ~~~~~G~~CPT~C~i~d~L~k~e~~V~~-------~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~ 68 (409)
T 1m1j_C 11 LDERFGSYCPTTCGIADFFNKYRLTTDG-------ELLEIEGLLQQATNSTGSIEYLIQHIKTIY 68 (409)
T ss_dssp CCGGGCCEEECTTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcccCCcCCCcccHHHHHHHHHhcchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555654 33699999999984321 112234555566666666666555544443
No 61
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=37.67 E-value=17 Score=24.63 Aligned_cols=25 Identities=8% Similarity=0.200 Sum_probs=20.4
Q ss_pred heeeecCCcccccccccchhHHHHH
Q 046479 45 LIIFSSHGMLFEFGSNFGMAKILER 69 (228)
Q Consensus 45 lIvfS~~Gkl~ef~s~~s~~~ileR 69 (228)
+.||.|+|.+++++..+.+.++...
T Consensus 8 i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 8 VFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEECTTSCEEEEETTCBHHHHHHH
T ss_pred EEEECCCCCEEEecCCCCHHHHHHH
Confidence 6799999999999987777776644
No 62
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=37.47 E-value=64 Score=21.75 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
+-|..|+.....|.+++..|+..+.+..
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567888888999999999999887653
No 63
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.19 E-value=67 Score=18.92 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHHhhHHH
Q 046479 118 GTLGVKELQKLEKQLDKTLSLS 139 (228)
Q Consensus 118 ~~LS~~EL~~LE~qLe~sL~~I 139 (228)
+++|.+||..||..|..--+++
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 3589999999998875443333
No 64
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.16 E-value=7.2 Score=26.68 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=38.0
Q ss_pred hhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 046479 29 LKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESL 105 (228)
Q Consensus 29 ~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~kie~L 105 (228)
+|+|+|.+.+++=|.|++.|. ++-.-|+||.....+ ...-+.|..=...+.++.+..
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~------------g~~~qI~k~l~~~~d--------~~~r~kW~~~~~ei~~E~~~V 72 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ------------GVLDQMNKYLYSVKD--------THLRQKWQQVWQEINVEAKQV 72 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH------------HHHHHHHHHHHTCSC--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH------------HHHHHHHHHHHhcCC--------HHHHHhHHHHHHHHHHHHHHH
Confidence 689999999999998887664 366677888775421 112246666555566655544
No 65
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=34.48 E-value=19 Score=29.82 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=7.8
Q ss_pred eeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479 9 ERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 9 krIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
-.|++...=++|+-||-.|+..|..+|+.--|-+=++=.|--..++|...+ .+-++|.+.
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eIdLFewA~~L~q~i~-----~ln~k~~~~ 176 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADKLYKDIC-----CVNDSYRNI 176 (246)
T ss_dssp ------------------------------------------CTTSGGGTT-----HHHHHHHHT
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchhhHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 445655556899999999999999888776554544444444444444322 234555554
No 66
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=34.33 E-value=42 Score=26.56 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k 171 (228)
++|.+|+.+-..|++||..|...
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999764
No 67
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=34.18 E-value=1.1e+02 Score=20.68 Aligned_cols=28 Identities=32% Similarity=0.340 Sum_probs=21.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046479 151 LETLQKKAHDLEEENKQLKFKLEEAIRA 178 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~~~~~~ 178 (228)
..+++.+...|..+|..|+.++......
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888999999999888766543
No 68
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=33.91 E-value=65 Score=18.11 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=13.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 046479 152 ETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 152 ~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
.+|..|+..|..+|..|..++..
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHH
Confidence 45555666666666666655543
No 69
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.83 E-value=53 Score=17.09 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046479 89 EALFREILRLRALRESLERSQR 110 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r 110 (228)
..++.|+..|++++.+|.+..|
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566677777777776665544
No 70
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.86 E-value=67 Score=26.75 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 046479 124 ELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQL 168 (228)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L 168 (228)
.+.+|+.+++.. ..|++.+.+.+..++++...|.+|+..|
T Consensus 55 ~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 55 DIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555544332 2344445566666666666666666655
No 71
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=32.82 E-value=68 Score=21.83 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
..+..+|+.++.....|.++|..|..-...
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777788888877665443
No 72
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=32.04 E-value=1.6e+02 Score=23.24 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHhh
Q 046479 116 DLGTLGVKELQKLEKQLDKTLSLSRQRKTD 145 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~q 145 (228)
+|++ |.++|+.+=..|-..+..+-+-|.-
T Consensus 52 nid~-se~~L~e~ckELh~~I~~LEeEKYD 80 (182)
T 1ytz_I 52 SLPG-SMQELQELSKKLHAKIDSVDEERYD 80 (182)
T ss_dssp CCCC-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7888 9999999999998888887666653
No 73
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=32.02 E-value=53 Score=18.63 Aligned_cols=23 Identities=9% Similarity=0.289 Sum_probs=12.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+.+|..|+..|..+|..|..++.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHH
Confidence 34455555556666666555544
No 74
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.61 E-value=2.7e+02 Score=24.54 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=8.1
Q ss_pred cccchhHHHHHHH
Q 046479 59 SNFGMAKILERYR 71 (228)
Q Consensus 59 s~~s~~~ileRY~ 71 (228)
|-..|+.+|++..
T Consensus 50 sGCrLqg~Ldk~e 62 (390)
T 1deq_A 50 SGCRMKGLIDEVD 62 (390)
T ss_pred ccchHHHHHHHhh
Confidence 3335788887654
No 75
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=31.28 E-value=2e+02 Score=22.81 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=30.2
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479 141 QRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIR 177 (228)
Q Consensus 141 ~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~ 177 (228)
.|+.......++++..|-....|.|..|...+.+...
T Consensus 122 Er~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~ 158 (189)
T 2v71_A 122 ERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKES 158 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566788899999999999999999999988654
No 76
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=31.08 E-value=78 Score=18.16 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHH
Q 046479 146 LMRQHLETLQKKAHDLEEENKQLK 169 (228)
Q Consensus 146 l~~~~i~~LkkKe~~L~eeN~~L~ 169 (228)
.+...|+.-+.....|.++|..|.
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344555555556667777777664
No 77
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=29.31 E-value=1.8e+02 Score=23.02 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
.+++.++.+...+.++.+.|.....
T Consensus 86 ~~Le~~r~~l~~~l~~~~~L~~~~~ 110 (192)
T 2p22_C 86 EDLHEQKDKVQALLENARILESKYV 110 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544443
No 78
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=28.37 E-value=96 Score=24.54 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
.++.+..|+.+...|+++|..|+.+....
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999998876543
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.77 E-value=3.3e+02 Score=24.41 Aligned_cols=52 Identities=29% Similarity=0.377 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 123 KELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+.+.+..+++.. ......++.+...+++++.++.-..++++...|++++++.
T Consensus 505 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 556 (597)
T 3oja_B 505 DNLNKVFTHLKE-RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNK 556 (597)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh
Confidence 334444444433 2233345556666666666666666666666666665543
No 80
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.60 E-value=1.8e+02 Score=21.00 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=31.7
Q ss_pred CCCCCCHHHHH----HHHHHHHHhhHHHHHHHhhhHHH----HHHHHHH---HHHhHHHHHHHHHHHHHHH
Q 046479 116 DLGTLGVKELQ----KLEKQLDKTLSLSRQRKTDLMRQ----HLETLQK---KAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 116 ~L~~LS~~EL~----~LE~qLe~sL~~IR~rK~ql~~~----~i~~Lkk---Ke~~L~eeN~~L~~k~~~~ 175 (228)
.-++++++||+ ..|.||..+-.+++.-..+.=.+ ....+++ -+..|+.--..|++++.+.
T Consensus 18 ~~~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 18 GPGSMTMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678887776 57888888877777665443221 1111222 2334555555555555554
No 81
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.01 E-value=78 Score=21.73 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L~~k 171 (228)
+.+.|+.++.....|.++|..|+.-
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777777654
No 82
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=25.73 E-value=4 Score=29.63 Aligned_cols=43 Identities=26% Similarity=0.317 Sum_probs=31.3
Q ss_pred cCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCccccccc
Q 046479 12 QNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS 59 (228)
Q Consensus 12 en~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s 59 (228)
.++.-...||-=.-.-|.+|.-+||.+| ++.|+|.|+-|-.-+
T Consensus 22 ~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 22 GDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRLDT 64 (106)
T ss_dssp TTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEEEE
T ss_pred CCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEecc
Confidence 4444555666666677888888999765 899999998766544
No 83
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.58 E-value=1.6e+02 Score=20.14 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 046479 147 MRQHLETLQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 147 ~~~~i~~LkkKe~~L~eeN~~L~~k 171 (228)
+.++|+.|+.....|.++|..|+.-
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666665543
No 84
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.13 E-value=1.2e+02 Score=20.23 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+++..|+.....|..+|..|..++.
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666654
No 85
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=24.49 E-value=18 Score=29.31 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=12.4
Q ss_pred hheeeecCCcccc--cc
Q 046479 44 ALIIFSSHGMLFE--FG 58 (228)
Q Consensus 44 alIvfS~~Gkl~e--f~ 58 (228)
++-+|||.|+||. |+
T Consensus 3 ~~t~fsp~Grl~QvEyA 19 (242)
T 1ryp_E 3 GVSTFSPEGRLFQVEYS 19 (242)
T ss_dssp CTTCBCTTSCBHHHHHH
T ss_pred CCceECCCCcChHHHhH
Confidence 5679999999995 64
No 86
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.44 E-value=87 Score=17.73 Aligned_cols=24 Identities=8% Similarity=0.277 Sum_probs=14.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
+.+|..|+..|..+|..|..++..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH
Confidence 345566666666666666665543
No 87
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=24.38 E-value=19 Score=29.98 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=12.7
Q ss_pred cchhheeeecCCcccc--ccc
Q 046479 41 AEVALIIFSSHGMLFE--FGS 59 (228)
Q Consensus 41 aeValIvfS~~Gkl~e--f~s 59 (228)
-|-++-+|||.|+||. |+.
T Consensus 12 yd~~~t~fSp~Grl~QvEYA~ 32 (264)
T 3h4p_A 12 YDRAITVFSPEGRLYQVEYAR 32 (264)
T ss_dssp ----CCCCCSSSSCHHHHHHH
T ss_pred cCCCcceECCCCeeHHHHhHH
Confidence 3667889999999996 654
No 88
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.82 E-value=4e+02 Score=24.01 Aligned_cols=50 Identities=10% Similarity=0.216 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 125 LQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 125 L~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
+++....||.....|....++-...+|..|+.....+.+....|..++..
T Consensus 144 ~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 144 LSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556665566655554445566666666666666666666655544
No 89
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=23.74 E-value=21 Score=30.21 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=15.4
Q ss_pred cccCcchhheeeecCCcccc
Q 046479 37 LLCDAEVALIIFSSHGMLFE 56 (228)
Q Consensus 37 vLCdaeValIvfS~~Gkl~e 56 (228)
+-.+-|-++-+|||.|++|.
T Consensus 4 ~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHH
T ss_pred CcCCccCCcccCCCCCchHH
Confidence 33455778889999999986
No 90
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.69 E-value=93 Score=17.82 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=7.3
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 046479 154 LQKKAHDLEEENKQLKFK 171 (228)
Q Consensus 154 LkkKe~~L~eeN~~L~~k 171 (228)
|..|+..|..+|..|..+
T Consensus 6 LE~kVEeLl~~~~~Le~E 23 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENE 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 333444444444444333
No 91
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=23.51 E-value=49 Score=21.05 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=20.9
Q ss_pred heeeecCCcccccccccchhHHHHHH
Q 046479 45 LIIFSSHGMLFEFGSNFGMAKILERY 70 (228)
Q Consensus 45 lIvfS~~Gkl~ef~s~~s~~~ileRY 70 (228)
+.|+-|+|+.++|+...++.+++..+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 45677899999998867788888776
No 92
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.46 E-value=66 Score=20.02 Aligned_cols=17 Identities=35% Similarity=0.237 Sum_probs=11.4
Q ss_pred CCCCCCHHHHHHHHHHH
Q 046479 116 DLGTLGVKELQKLEKQL 132 (228)
Q Consensus 116 ~L~~LS~~EL~~LE~qL 132 (228)
.|..+|++||++--..|
T Consensus 6 fLk~ls~eEL~~rl~~L 22 (51)
T 2jo8_A 6 FLKSWTVEDLQKRLLAL 22 (51)
T ss_dssp GGGGSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHc
Confidence 35677999988754333
No 93
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=23.06 E-value=43 Score=26.07 Aligned_cols=38 Identities=18% Similarity=0.458 Sum_probs=28.0
Q ss_pred hcccCcchhheeeecCCcccc-cc-ccc-----chhHHHHHHHhh
Q 046479 36 SLLCDAEVALIIFSSHGMLFE-FG-SNF-----GMAKILERYRQY 73 (228)
Q Consensus 36 SvLCdaeValIvfS~~Gkl~e-f~-s~~-----s~~~ileRY~~~ 73 (228)
+.-|++.|-+++|||+-+.|- |. .+. .+++||+.|++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~ 160 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQV 160 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 456999999999999988886 53 333 366777777653
No 94
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.79 E-value=1.7e+02 Score=19.61 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 150 HLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 150 ~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
-|..|+.++..+.+++..|+.+..
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443
No 95
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=22.68 E-value=20 Score=29.04 Aligned_cols=17 Identities=41% Similarity=0.817 Sum_probs=13.4
Q ss_pred chhheeeecCCcccc--cc
Q 046479 42 EVALIIFSSHGMLFE--FG 58 (228)
Q Consensus 42 eValIvfS~~Gkl~e--f~ 58 (228)
|-++-+|||.|+||. |+
T Consensus 3 d~~~t~fsp~Grl~QvEya 21 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQVEYA 21 (241)
T ss_dssp CCCCSCCBTTTBCHHHHHH
T ss_pred CCCceeECCCCcchHHHHH
Confidence 446779999999995 64
No 96
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.59 E-value=99 Score=17.46 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=12.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 046479 152 ETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 152 ~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
.+|..|+..|..+|..|..++.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHH
Confidence 4555566666666666655544
No 97
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=22.57 E-value=1.7e+02 Score=23.26 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=28.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046479 137 SLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176 (228)
Q Consensus 137 ~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~ 176 (228)
..|..+|.+| |+.|++|...|.++-..|...+..+.
T Consensus 11 ~~i~~Kk~EL----i~~L~~kL~~L~~eqe~l~ee~~~N~ 46 (190)
T 3thf_A 11 NLIKQKMDEL----IKHLNQKIVSLKREQQTISEECSAND 46 (190)
T ss_dssp CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777666 67899999999999999888877654
No 98
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=22.45 E-value=34 Score=22.90 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=20.0
Q ss_pred cCcchhheeeecCCcccccccccchhHHHHHH
Q 046479 39 CDAEVALIIFSSHGMLFEFGSNFGMAKILERY 70 (228)
Q Consensus 39 CdaeValIvfS~~Gkl~ef~s~~s~~~ileRY 70 (228)
|+..-.++|. |..|...++..+.+||+.|
T Consensus 57 C~~~P~v~V~---~~~y~~vt~e~v~~il~~~ 85 (85)
T 2auv_A 57 CALAPIVMVG---EKVYGNVTPGQVKKILAEY 85 (85)
T ss_dssp CTTSCCCEEG---GGCCCCSSSSHHHHHHHHC
T ss_pred CCCCCEEEEC---CEEECCCCHHHHHHHHHhC
Confidence 5544444453 6778777877899998865
No 99
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=22.08 E-value=2.3e+02 Score=20.53 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~ 172 (228)
++|++|+..+-...+..-...-. -.+++.+++..+.++...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 57 GFNLEESGELVNLFNDPQRHSAD-VKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp TCCHHHHHHHHHHHHCTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888765544321111111 124566666777777666666666665543
No 100
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.85 E-value=1.6e+02 Score=20.06 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 152 ETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 152 ~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
..+......|..+|..|+.++.+.
T Consensus 62 ~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 62 QKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445777777777777654
No 101
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.75 E-value=6.2e+02 Score=25.39 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046479 90 ALFREILRLRALRESLE 106 (228)
Q Consensus 90 ~l~~E~~kLk~kie~Lq 106 (228)
.+..++..++.+++.++
T Consensus 861 ~L~~eL~el~~~L~~le 877 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAE 877 (1184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555444443
No 102
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=21.52 E-value=23 Score=28.88 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=13.8
Q ss_pred chhheeeecCCcccc--cc
Q 046479 42 EVALIIFSSHGMLFE--FG 58 (228)
Q Consensus 42 eValIvfS~~Gkl~e--f~ 58 (228)
|-++-+|||.|+||. |+
T Consensus 6 d~~~t~fsp~Grl~QvEyA 24 (250)
T 1ryp_B 6 SFSLTTFSPSGKLGQIDYA 24 (250)
T ss_dssp CSBSSCBCTTSCBHHHHHH
T ss_pred cCCceeECCCCccHHHHhH
Confidence 556789999999995 64
No 103
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=21.03 E-value=25 Score=28.50 Aligned_cols=17 Identities=29% Similarity=0.733 Sum_probs=13.7
Q ss_pred chhheeeecCCcccc--cc
Q 046479 42 EVALIIFSSHGMLFE--FG 58 (228)
Q Consensus 42 eValIvfS~~Gkl~e--f~ 58 (228)
|-++-+|||.|+||. |+
T Consensus 4 d~~~t~fsp~Grl~QvEYA 22 (243)
T 1ryp_A 4 DRHITIFSPEGRLYQVEYA 22 (243)
T ss_dssp GGTSSSCCTTSCCHHHHHH
T ss_pred CCCCceECCCCeeHHHHHH
Confidence 456779999999995 64
No 104
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=20.73 E-value=24 Score=28.40 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=13.8
Q ss_pred chhheeeecCCcccc--cc
Q 046479 42 EVALIIFSSHGMLFE--FG 58 (228)
Q Consensus 42 eValIvfS~~Gkl~e--f~ 58 (228)
|-++-+|||.|+||. |+
T Consensus 6 d~~~t~fsp~Grl~QvEya 24 (233)
T 1iru_B 6 SFSLTTFSPSGKLVQIEYA 24 (233)
T ss_dssp CSBSCCCCTTSCCHHHHHH
T ss_pred cCCceeECCCCeEehhHhH
Confidence 456779999999995 64
No 105
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=20.32 E-value=27 Score=28.64 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=15.0
Q ss_pred CcchhheeeecCCcccc--cc
Q 046479 40 DAEVALIIFSSHGMLFE--FG 58 (228)
Q Consensus 40 daeValIvfS~~Gkl~e--f~ 58 (228)
+=|-++-+|||.|+||. |+
T Consensus 6 ~yd~~~t~fsp~Grl~QvEyA 26 (254)
T 1iru_G 6 GYDLSASTFSPDGRVFQVEYA 26 (254)
T ss_dssp STTSCTTCCCTTSCCHHHHHH
T ss_pred ccCCCCccCCcCCccHHHHhH
Confidence 44667789999999995 64
Done!