Query 046479
Match_columns 228
No_of_seqs 262 out of 1676
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 22:09:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046479.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046479hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1egwa_ d.88.1.1 (A:) Myocyte 100.0 1.6E-39 1.1E-43 224.4 3.5 71 2-73 1-71 (71)
2 d1srsa_ d.88.1.1 (A:) Serum re 100.0 2.1E-37 1.6E-41 219.1 2.4 72 1-73 2-73 (84)
3 d1mnma_ d.88.1.1 (A:) MCM1 tra 100.0 5E-37 3.6E-41 218.5 2.6 73 2-75 3-75 (85)
4 d1kafa_ d.199.1.1 (A:) DNA-bin 58.1 0.39 2.9E-05 32.7 -2.1 54 5-74 22-76 (108)
5 d1bjta_ e.11.1.1 (A:) DNA topo 56.2 15 0.0011 33.2 7.9 44 25-73 539-582 (760)
6 d1r8ea1 a.6.1.3 (A:3-120) Tran 47.6 18 0.0013 24.1 5.6 9 120-128 62-70 (118)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 46.0 35 0.0026 22.4 7.2 29 146-174 76-104 (107)
8 d1q08a_ a.6.1.3 (A:) Transcrip 45.9 33 0.0024 22.0 6.7 52 119-170 16-67 (94)
9 d1ab4a_ e.11.1.1 (A:) DNA Gyra 43.8 35 0.0026 28.9 8.0 69 22-107 285-353 (493)
10 d1m2da_ c.47.1.11 (A:) Thiored 42.2 6 0.00043 26.3 2.0 34 38-72 56-89 (101)
11 d1uklc_ a.38.1.1 (C:) SREBP-2 37.3 23 0.0017 20.9 4.2 25 149-173 33-57 (61)
12 d1u3em2 d.285.1.1 (M:106-174) 37.3 5.6 0.00041 24.6 1.1 25 42-66 15-39 (69)
13 d2azea1 e.63.1.1 (A:199-346) T 33.8 73 0.0053 22.5 7.5 44 123-168 2-45 (148)
14 d1am9a_ a.38.1.1 (A:) SREBP-1a 32.0 42 0.003 20.8 5.0 27 149-175 50-76 (80)
15 d1nlwa_ a.38.1.1 (A:) Mad prot 28.7 58 0.0042 19.9 5.3 23 151-173 56-78 (79)
16 d1iruc_ d.153.1.4 (C:) Proteas 27.6 6.6 0.00048 30.3 0.3 15 42-56 5-19 (250)
17 d1irug_ d.153.1.4 (G:) Proteas 25.6 8.6 0.00063 29.6 0.6 21 36-56 2-22 (245)
18 d1e52a_ a.2.9.1 (A:) C-termina 24.9 43 0.0032 19.6 3.7 39 119-157 9-51 (56)
19 d1rypf_ d.153.1.4 (F:) Proteas 23.5 8.3 0.00061 29.3 0.1 17 42-58 6-24 (233)
20 d1rypg_ d.153.1.4 (G:) Proteas 23.4 8 0.00058 29.7 -0.0 19 40-58 3-23 (244)
21 d2fcia1 d.93.1.1 (A:1-105) Pho 21.4 23 0.0017 23.3 2.2 44 33-76 45-90 (105)
22 d1r8da_ a.6.1.3 (A:) Multidrug 21.2 61 0.0044 20.9 4.4 10 120-129 60-69 (109)
23 d1zkea1 a.30.6.1 (A:1-79) Hypo 20.4 61 0.0045 20.1 3.8 25 89-113 53-77 (79)
24 d2vgba3 c.49.1.1 (A:440-573) P 20.2 12 0.00088 25.9 0.4 25 28-53 16-40 (134)
25 d1yara1 d.153.1.4 (A:13-233) P 20.1 12 0.00086 28.0 0.4 12 47-58 2-15 (221)
26 d2azeb1 e.63.1.2 (B:201-301) T 20.1 1.1E+02 0.0078 20.0 5.5 31 145-175 4-34 (101)
No 1
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.6e-39 Score=224.42 Aligned_cols=71 Identities=55% Similarity=0.916 Sum_probs=69.0
Q ss_pred CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479 2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
||+||+|++|||+.+|+|||||||+||||||+|||||||||||||||||+|++|+|+| +++++||+||+.+
T Consensus 1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s-~~~~~vl~ry~~~ 71 (71)
T d1egwa_ 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEY 71 (71)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC
T ss_pred CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeC-CCHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999999 6799999999864
No 2
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.1e-37 Score=219.10 Aligned_cols=72 Identities=36% Similarity=0.585 Sum_probs=69.5
Q ss_pred CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479 1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
+||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+| ++++.|+++|...
T Consensus 2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s-~~~~~vi~~~~~~ 73 (84)
T d1srsa_ 2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSETGK 73 (84)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEEC-GGGHHHHSSHHHH
T ss_pred CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeC-CCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999 6799999999754
No 3
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=5e-37 Score=218.51 Aligned_cols=73 Identities=33% Similarity=0.585 Sum_probs=70.1
Q ss_pred CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhcc
Q 046479 2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCY 75 (228)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~ 75 (228)
||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+| |+|+.|++||...+.
T Consensus 3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~s-p~v~~vl~r~~~~~~ 75 (85)
T d1mnma_ 3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEGRNL 75 (85)
T ss_dssp CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHHHHH
T ss_pred CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccC-CCHHHHHHHHhcccH
Confidence 8999999999999999999999999999999999999999999999999999999999 679999999987653
No 4
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]}
Probab=58.10 E-value=0.39 Score=32.72 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=37.8
Q ss_pred ccceeee-cCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479 5 KMVLERI-QNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYC 74 (228)
Q Consensus 5 Ki~ikrI-en~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~ 74 (228)
+|++|.| +|.+|=+|+|+||.+|+-| +-| -.+|.+--|+- .-++..+..|....
T Consensus 22 ~i~lk~v~inRsNyev~f~krT~GiR~----fEi-----------~n~G~~RIfgY-km~e~~~q~Ft~lg 76 (108)
T d1kafa_ 22 GFVLKKVEIYRSNYLAILEKRTNGIRN----FEI-----------NNNGNMRIFGY-KMMEHHIQKFTDIG 76 (108)
T ss_dssp TCCEEEEEEETTEEEEEEEEEETTEEE----EEE-----------CTTSEEEEEEE-SCCHHHHHHHHTTT
T ss_pred ceeEeeeeeccccceeehhhhcCceeE----EEE-----------ecCCcEEEEee-eccHHHHHHHhhcC
Confidence 6889998 5778889999999999643 222 25676666665 33667777776553
No 5
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.16 E-value=15 Score=33.24 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=29.4
Q ss_pred hhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479 25 RDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQY 73 (228)
Q Consensus 25 r~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~ 73 (228)
.++|+|+-. |.+-+.+ .-+++|.++|++..|.| +.+||+.|-.+
T Consensus 539 ~~~l~k~~k-L~~s~s~-~Nm~l~d~~g~i~k~~s---l~eIL~~f~~~ 582 (760)
T d1bjta_ 539 KIGFYERFK-LISPISL-MNMVAFDPHGKIKKYNS---VNEILSEFYYV 582 (760)
T ss_dssp HHCHHHHTT-CEEEEEC-TTEEEECTTSCEEEESS---HHHHHHHHHHH
T ss_pred hhhhhhhhh-hhhhhhh-cceeEEcCCCcccchhh---HHHHHHHHHHH
Confidence 356666533 3222222 35788999999999977 78888888654
No 6
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=47.59 E-value=18 Score=24.08 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=4.7
Q ss_pred CCHHHHHHH
Q 046479 120 LGVKELQKL 128 (228)
Q Consensus 120 LS~~EL~~L 128 (228)
+|++++..+
T Consensus 62 ~sl~eIk~~ 70 (118)
T d1r8ea1 62 TPLEEMKKA 70 (118)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 555555543
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=45.99 E-value=35 Score=22.35 Aligned_cols=29 Identities=7% Similarity=0.316 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479 146 LMRQHLETLQKKAHDLEEENKQLKFKLEE 174 (228)
Q Consensus 146 l~~~~i~~LkkKe~~L~eeN~~L~~k~~~ 174 (228)
.+...|..|.+.+..+.++-..++.++.+
T Consensus 76 ~l~~~i~~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 76 TLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777776653
No 8
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=45.94 E-value=33 Score=22.01 Aligned_cols=52 Identities=10% Similarity=0.209 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 046479 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKF 170 (228)
Q Consensus 119 ~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~ 170 (228)
++|++|+..|-...+..-..--..-..++.+++.++..+...|+.--..|..
T Consensus 16 GFsL~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L~~ 67 (94)
T d1q08a_ 16 GFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQR 67 (94)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999998765543211111112356778888888888887765555543
No 9
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=43.80 E-value=35 Score=28.85 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=34.1
Q ss_pred HhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCCCCCCCCCCcchHHHHHHHHHHHHH
Q 046479 22 AKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRAL 101 (228)
Q Consensus 22 sKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~~~~~~~~~e~q~l~~E~~kLk~k 101 (228)
..-.+||+|+- .|.+- +++.++--.++...|.| +.+||+.|-.+...- -......++.+++++
T Consensus 285 ~~~~~~L~k~t-~L~ss----~s~n~~~l~d~~pk~~~---l~eIL~~f~~~R~e~---------~~kR~~y~L~kle~r 347 (493)
T d1ab4a_ 285 EVVLNNLYSQT-QLQVS----FGINMVALHHGQPKIMN---LKDIIAAFVRHRREV---------VTRRTIFELRKARDR 347 (493)
T ss_dssp HHHHHHHHHHS-TTEEE----EEEECEEEETTEEEECC---HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-hhhhc----cceeeeeecCCeeeecc---HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 44567787762 23222 22222222233445655 888999887653210 012344455566666
Q ss_pred HHHHHH
Q 046479 102 RESLER 107 (228)
Q Consensus 102 ie~Lq~ 107 (228)
++.|+.
T Consensus 348 l~iL~g 353 (493)
T d1ab4a_ 348 AHILEA 353 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 10
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=42.16 E-value=6 Score=26.27 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=25.5
Q ss_pred ccCcchhheeeecCCcccccccccchhHHHHHHHh
Q 046479 38 LCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQ 72 (228)
Q Consensus 38 LCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~ 72 (228)
.|+..-.+ ++-|.|..|...++..+.+||+.+..
T Consensus 56 ~C~~gP~v-~i~P~~~~Y~~v~~e~v~~Iv~~hl~ 89 (101)
T d1m2da_ 56 ASMMGPVV-VVYPDGVWYGQVKPEDVDEIVEKHLK 89 (101)
T ss_dssp CGGGCSCE-EEETTTEEECSCCGGGHHHHHHHTTT
T ss_pred ccCCCceE-EEcCCccEEecCCHHHHHHHHHHHHH
Confidence 35544444 55688999999998899999998644
No 11
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.28 E-value=23 Score=20.95 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+-|..|++++..|.+++..|+....
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888899999998877653
No 12
>d1u3em2 d.285.1.1 (M:106-174) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
Probab=37.27 E-value=5.6 Score=24.55 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.7
Q ss_pred chhheeeecCCcccccccccchhHH
Q 046479 42 EVALIIFSSHGMLFEFGSNFGMAKI 66 (228)
Q Consensus 42 eValIvfS~~Gkl~ef~s~~s~~~i 66 (228)
|--++|.||+|--|.|+|....-+.
T Consensus 15 ekpIyvis~sGh~y~f~s~~kAael 39 (69)
T d1u3em2 15 QKPIIVISPDGIEKEYPSTKCACEE 39 (69)
T ss_dssp CCCEEEECTTSCEEEESCHHHHHHH
T ss_pred cCCEEEEcCCCceEEcchHHHHHHH
Confidence 3457899999999999995544433
No 13
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.82 E-value=73 Score=22.47 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 046479 123 KELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQL 168 (228)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L 168 (228)
.|.+.|+........+|+.++.+| .++...+.--+.|.+-|+.+
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~L--qeLi~Q~iafknLV~RN~~~ 45 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHA 45 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHH
Confidence 467788888888888887776554 22333333345666666654
No 14
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.03 E-value=42 Score=20.77 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 149 QHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 149 ~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+-|..|++....|.++|..|+..+...
T Consensus 50 ~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 50 DYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777788888888888777664
No 15
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.72 E-value=58 Score=19.89 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 046479 151 LETLQKKAHDLEEENKQLKFKLE 173 (228)
Q Consensus 151 i~~LkkKe~~L~eeN~~L~~k~~ 173 (228)
+..+......|..++..|+.+++
T Consensus 56 ~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 56 DRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555556666666666554
No 16
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.63 E-value=6.6 Score=30.25 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=12.9
Q ss_pred chhheeeecCCcccc
Q 046479 42 EVALIIFSSHGMLFE 56 (228)
Q Consensus 42 eValIvfS~~Gkl~e 56 (228)
|-++-+|||+|++|.
T Consensus 5 d~~~t~fsp~Grl~Q 19 (250)
T d1iruc_ 5 DSRTTIFSPEGRLYQ 19 (250)
T ss_dssp CCCTTCCCTTSCCHH
T ss_pred CCCCeeECCCCcchH
Confidence 557789999999996
No 17
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.57 E-value=8.6 Score=29.57 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=16.9
Q ss_pred hcccCcchhheeeecCCcccc
Q 046479 36 SLLCDAEVALIIFSSHGMLFE 56 (228)
Q Consensus 36 SvLCdaeValIvfS~~Gkl~e 56 (228)
|+=.+-|-.+-+|||+|+++.
T Consensus 2 ~~~~~yd~~~t~Fsp~Grl~Q 22 (245)
T d1irug_ 2 SIGTGYDLSASTFSPDGRVFQ 22 (245)
T ss_dssp CCCSSTTSCTTCCCTTSCCHH
T ss_pred CCccccCCCCceECCCCeehH
Confidence 344567888889999999996
No 18
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=24.87 E-value=43 Score=19.63 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=24.5
Q ss_pred CCCHHH----HHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 046479 119 TLGVKE----LQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKK 157 (228)
Q Consensus 119 ~LS~~E----L~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkK 157 (228)
++|.++ +..|+.++..+-+...=-+.-.+.|+|..|++.
T Consensus 9 ~ls~~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~ 51 (56)
T d1e52a_ 9 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 51 (56)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 455555 445666666666666666666777777777664
No 19
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.48 E-value=8.3 Score=29.31 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=13.3
Q ss_pred chhheeeecCCcccc--cc
Q 046479 42 EVALIIFSSHGMLFE--FG 58 (228)
Q Consensus 42 eValIvfS~~Gkl~e--f~ 58 (228)
|-.+-+|||+||+|. |+
T Consensus 6 d~~~t~FspdGrl~QvEyA 24 (233)
T d1rypf_ 6 DGDTVTFSPTGRLFQVEYA 24 (233)
T ss_dssp SSCTTCCCTTSCCHHHHHH
T ss_pred cCCCceECCCCcChHHHHH
Confidence 345668999999996 75
No 20
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.44 E-value=8 Score=29.69 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=15.1
Q ss_pred CcchhheeeecCCccc--ccc
Q 046479 40 DAEVALIIFSSHGMLF--EFG 58 (228)
Q Consensus 40 daeValIvfS~~Gkl~--ef~ 58 (228)
+-|-++=+|||.|+++ ||+
T Consensus 3 gyd~~~t~fsp~Grl~QvEya 23 (244)
T d1rypg_ 3 GYDLSNSVFSPDGRNFQVEYA 23 (244)
T ss_dssp CTTSSTTCCCTTSCCHHHHHH
T ss_pred CcCCCCceECCCCeehHHHHH
Confidence 4466777999999999 575
No 21
>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.43 E-value=23 Score=23.29 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=29.8
Q ss_pred hhhhcccCcchhheeeecCCcccccccc--cchhHHHHHHHhhccC
Q 046479 33 YELSLLCDAEVALIIFSSHGMLFEFGSN--FGMAKILERYRQYCYT 76 (228)
Q Consensus 33 ~ELSvLCdaeValIvfS~~Gkl~ef~s~--~s~~~ileRY~~~~~~ 76 (228)
+=|||.++-.|-=+.+-.+|..|..... +++.++++.|.+.+..
T Consensus 45 yvLSv~~~~~v~H~~I~~~~~~~~~~~~~F~sl~~LV~~y~~~~~~ 90 (105)
T d2fcia1 45 YAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLY 90 (105)
T ss_dssp EEEEEEETTEECCCEEBCCSSCEECSSSEESTTHHHHHHHHHSCCS
T ss_pred EEEEEEeccccEEEEEEecCCeEecCCcccCCHHHHHHHHhhCCCC
Confidence 4578888777665555566666654432 2699999999987654
No 22
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=21.19 E-value=61 Score=20.88 Aligned_cols=10 Identities=10% Similarity=0.414 Sum_probs=7.5
Q ss_pred CCHHHHHHHH
Q 046479 120 LGVKELQKLE 129 (228)
Q Consensus 120 LS~~EL~~LE 129 (228)
+|++|++.+-
T Consensus 60 ~sl~eI~~~l 69 (109)
T d1r8da_ 60 FRLDEIKEML 69 (109)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7888887763
No 23
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=20.43 E-value=61 Score=20.09 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 046479 89 EALFREILRLRALRESLERSQRHFL 113 (228)
Q Consensus 89 q~l~~E~~kLk~kie~Lq~~~r~l~ 113 (228)
+....|+.+||+.++.|.+-.+.++
T Consensus 53 ~qid~ev~kLK~~IdaLNKiKke~l 77 (79)
T d1zkea1 53 TQLSEEVERLKELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777899999999999988777653
No 24
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.18 E-value=12 Score=25.92 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=20.0
Q ss_pred HhhhhhhhhcccCcchhheeeecCCc
Q 046479 28 LLKKAYELSLLCDAEVALIIFSSHGM 53 (228)
Q Consensus 28 L~KKA~ELSvLCdaeValIvfS~~Gk 53 (228)
+-.=|-+++.-++|. |+|||+.+|.
T Consensus 16 ia~sav~~A~~l~a~-aIvv~T~sG~ 40 (134)
T d2vgba3 16 TAIGAVEAAFKCCAA-AIIVLTTTGR 40 (134)
T ss_dssp HHHHHHHHHHHHTCS-EEEEECSSSH
T ss_pred HHHHHHHHHHhCCCC-EEEEEcCCcH
Confidence 444478888889998 6999999884
No 25
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=20.12 E-value=12 Score=28.01 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=10.2
Q ss_pred eeecCCcccc--cc
Q 046479 47 IFSSHGMLFE--FG 58 (228)
Q Consensus 47 vfS~~Gkl~e--f~ 58 (228)
||||+||+|. |+
T Consensus 2 ~fsp~G~l~QvEYa 15 (221)
T d1yara1 2 VFSPDGRLFQVEYA 15 (221)
T ss_dssp CCCTTSCCHHHHHH
T ss_pred eECCCCcchHHHHH
Confidence 7999999986 64
No 26
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.06 E-value=1.1e+02 Score=19.96 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479 145 DLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175 (228)
Q Consensus 145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~ 175 (228)
+-+..+++.|..+|+.|-+....+..++...
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~~L~~l 34 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTTQLRLL 34 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467788888888888888877777776654
Done!