Query 046481
Match_columns 247
No_of_seqs 167 out of 1449
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 12:33:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 5.4E-27 1.2E-31 179.2 7.0 99 33-131 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.9 4.8E-25 1E-29 168.4 9.5 95 147-244 10-106 (106)
3 PHA00008 J DNA packaging prote 19.5 64 0.0014 17.8 0.9 11 111-121 11-21 (26)
4 PF04726 Microvir_J: Microviru 15.8 63 0.0014 17.4 0.4 11 111-121 10-20 (24)
5 PF15183 MRAP: Melanocortin-2 14.2 1.6E+02 0.0034 21.5 2.1 15 8-22 48-62 (90)
6 PLN03207 stomagen; Provisional 13.2 2E+02 0.0043 21.6 2.5 12 10-21 14-25 (113)
7 PF13923 zf-C3HC4_2: Zinc fing 10.8 1.4E+02 0.0031 17.5 1.0 18 92-110 20-37 (39)
8 PF07127 Nodulin_late: Late no 10.4 2.9E+02 0.0062 17.9 2.4 11 10-20 10-20 (54)
9 PF12661 hEGF: Human growth fa 9.5 1E+02 0.0022 14.2 0.0 11 197-207 3-13 (13)
10 COG2906 Bfd Bacterioferritin-a 9.2 2.7E+02 0.0059 19.1 2.0 16 91-106 35-50 (63)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.94 E-value=5.4e-27 Score=179.16 Aligned_cols=99 Identities=43% Similarity=0.873 Sum_probs=76.8
Q ss_pred ccCCC-C--Ccc-cCCcHHHHHHHHHHHHhHhcCCC---CCccccccCCCCCeEEEEEEcCCCCCccchHHHHHHHHHHH
Q 046481 33 SYSCS-N--ENF-TANGRYQTNLNALMGYIYHQAPP---TGFGIGSLGKNPIQANGLALCRGDVSASDCKTCVADAISTI 105 (247)
Q Consensus 33 ~~~C~-~--~~~-~~~s~f~~nl~~ll~~L~~~a~~---~~f~~~~~g~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 105 (247)
|+.|+ + +++ +++++|++||+.||+.|..+++. ++|++++.|.++++||||+||++|+++.+|+.||+.|+.++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 67898 3 567 57888999999999999998763 48999988889999999999999999999999999999999
Q ss_pred hhhCCCCcceEEEccceEEEEecccc
Q 046481 106 RKNCPYSKSAKIFYDNCMLKYSNDKF 131 (247)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lRYs~~~f 131 (247)
++.|+.+++|+||+++|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999998
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.92 E-value=4.8e-25 Score=168.36 Aligned_cols=95 Identities=40% Similarity=0.736 Sum_probs=75.9
Q ss_pred ccC-CcchhhHHHHHHHHHHHHHHhccC-CCceecccccccCCCcceEEEEEeecCCCChhhhHHHHHHHHhhccccCCC
Q 046481 147 NNV-GYPVIFNQKSKDLLRQLADEASGK-PKLYAAGELELNEGSKKKIYGLAQCTRDLSYNDCKMGLDRIISDLPRCCDG 224 (247)
Q Consensus 147 ~~~-s~~~~f~~~l~~ll~~L~~~a~~s-~~~fa~g~~~~~~~~~~~vYglaQC~~dls~~dC~~CL~~a~~~i~~~c~~ 224 (247)
+++ +++..|+.++..||..|++.++.+ +.+|++++.+. ++++||||+||++||+++||+.||+.++.+|+++|++
T Consensus 10 ~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~---~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~ 86 (106)
T PF01657_consen 10 NNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGS---GPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPG 86 (106)
T ss_dssp B----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--S---T---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTS
T ss_pred CCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCC---CCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCC
Confidence 344 566679999999999999998754 57899998644 6889999999999999999999999999999999999
Q ss_pred CcceEEEcCCeeEEEecCCC
Q 046481 225 KQGGRVVTGSCTIRYEIYPF 244 (247)
Q Consensus 225 ~~gg~v~~~~C~lRYe~~~F 244 (247)
++||+|++++|+||||+|+|
T Consensus 87 ~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 87 SRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp BSSEEEEESSEEEEEESS--
T ss_pred CceEEEECCCEEEEEECCCC
Confidence 99999999999999999998
No 3
>PHA00008 J DNA packaging protein
Probab=19.46 E-value=64 Score=17.80 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=8.6
Q ss_pred CCcceEEEccc
Q 046481 111 YSKSAKIFYDN 121 (247)
Q Consensus 111 ~~~~a~i~~~~ 121 (247)
.++||++||-+
T Consensus 11 r~KGARLWYVG 21 (26)
T PHA00008 11 RRKGARLWYVG 21 (26)
T ss_pred ccCceEEEEec
Confidence 46899999853
No 4
>PF04726 Microvir_J: Microvirus J protein; InterPro: IPR006815 This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic C terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions [].; GO: 0003677 DNA binding, 0019073 viral DNA genome packaging, 0019028 viral capsid; PDB: 1M06_J 1GFF_3 1RB8_J 2BPA_3.
Probab=15.78 E-value=63 Score=17.44 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=4.8
Q ss_pred CCcceEEEccc
Q 046481 111 YSKSAKIFYDN 121 (247)
Q Consensus 111 ~~~~a~i~~~~ 121 (247)
.++||++||-+
T Consensus 10 ~~kgarlwyvg 20 (24)
T PF04726_consen 10 KRKGARLWYVG 20 (24)
T ss_dssp SSSSS----SS
T ss_pred ccCceEEEEec
Confidence 46899999853
No 5
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=14.21 E-value=1.6e+02 Score=21.49 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhh
Q 046481 8 STFSLLISFALLLQT 22 (247)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (247)
++++|+|+++++.+-
T Consensus 48 ~FV~~lF~iL~~ms~ 62 (90)
T PF15183_consen 48 AFVVFLFLILLYMSW 62 (90)
T ss_pred HHHHHHHHHHHHHhc
Confidence 456666666666653
No 6
>PLN03207 stomagen; Provisional
Probab=13.19 E-value=2e+02 Score=21.61 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhh
Q 046481 10 FSLLISFALLLQ 21 (247)
Q Consensus 10 ~~~~~~~~~~~~ 21 (247)
.+|+|+|++|+.
T Consensus 14 ~lffLl~~llla 25 (113)
T PLN03207 14 TLFFLLFFLLLG 25 (113)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=10.76 E-value=1.4e+02 Score=17.54 Aligned_cols=18 Identities=33% Similarity=0.886 Sum_probs=13.6
Q ss_pred cchHHHHHHHHHHHhhhCC
Q 046481 92 SDCKTCVADAISTIRKNCP 110 (247)
Q Consensus 92 ~~C~~Cl~~a~~~~~~~C~ 110 (247)
.-|..|+...... ...||
T Consensus 20 ~fC~~C~~~~~~~-~~~CP 37 (39)
T PF13923_consen 20 SFCKECIEKYLEK-NPKCP 37 (39)
T ss_dssp EEEHHHHHHHHHC-TSB-T
T ss_pred chhHHHHHHHHHC-cCCCc
Confidence 4699999998877 66776
No 8
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=10.39 E-value=2.9e+02 Score=17.85 Aligned_cols=11 Identities=9% Similarity=0.141 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q 046481 10 FSLLISFALLL 20 (247)
Q Consensus 10 ~~~~~~~~~~~ 20 (247)
++++|+++++.
T Consensus 10 ~mIiflslflv 20 (54)
T PF07127_consen 10 AMIIFLSLFLV 20 (54)
T ss_pred HHHHHHHHHHh
Confidence 33334444333
No 9
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=9.55 E-value=1e+02 Score=14.18 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=5.7
Q ss_pred eecCCCChhhh
Q 046481 197 QCTRDLSYNDC 207 (247)
Q Consensus 197 QC~~dls~~dC 207 (247)
+|.++.+...|
T Consensus 3 ~C~~G~~G~~C 13 (13)
T PF12661_consen 3 QCPPGWTGPNC 13 (13)
T ss_dssp EE-TTEETTTT
T ss_pred cCcCCCcCCCC
Confidence 56666655554
No 10
>COG2906 Bfd Bacterioferritin-associated ferredoxin [Inorganic ion transport and metabolism]
Probab=9.25 E-value=2.7e+02 Score=19.07 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHh
Q 046481 91 ASDCKTCVADAISTIR 106 (247)
Q Consensus 91 ~~~C~~Cl~~a~~~~~ 106 (247)
+++|..|+..|.+.+.
T Consensus 35 Gs~CGkC~~~Arevl~ 50 (63)
T COG2906 35 GSQCGKCVRAAREVLE 50 (63)
T ss_pred ccchHHHHHHHHHHHH
Done!