Query 046481
Match_columns 247
No_of_seqs 167 out of 1449
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 22:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 9.5E-30 3.3E-34 194.0 9.3 103 29-131 3-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 100.0 3.7E-29 1.3E-33 190.7 9.0 104 28-131 2-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.9 2.3E-27 8E-32 180.7 12.1 102 141-244 7-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.9 7.1E-27 2.4E-31 178.1 12.1 106 137-244 3-108 (108)
5 1gff_3 Bacteriophage G4 capsid 19.1 42 0.0014 17.6 1.0 11 111-121 11-21 (26)
6 1weo_A Cellulose synthase, cat 10.5 1E+02 0.0036 21.7 1.4 21 203-223 42-62 (93)
7 1m06_J J protein, small core p 10.2 59 0.002 17.1 -0.0 10 111-120 10-19 (26)
8 2xk0_A Polycomb protein PCL; t 7.9 1.6E+02 0.0055 19.6 1.4 12 119-130 41-52 (69)
9 1g25_A CDK-activating kinase a 6.3 1.9E+02 0.0065 17.8 1.2 20 92-111 29-48 (65)
10 2ysj_A Tripartite motif-contai 6.2 2E+02 0.0069 17.4 1.3 19 92-110 41-61 (63)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.96 E-value=9.5e-30 Score=194.00 Aligned_cols=103 Identities=20% Similarity=0.485 Sum_probs=93.9
Q ss_pred CCccccCCCCCcccCCcHHHHHHHHHHHHhHhcCCC--CCccccccC-CCCCeEEEEEEcCCCCCccchHHHHHHHHHHH
Q 046481 29 VDPISYSCSNENFTANGRYQTNLNALMGYIYHQAPP--TGFGIGSLG-KNPIQANGLALCRGDVSASDCKTCVADAISTI 105 (247)
Q Consensus 29 ~~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~--~~f~~~~~g-~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 105 (247)
.+++++.|+.++++++++|++||+.||+.|+++++. .+|+++..| .++++||||+|||||+++++|+.||+.|+.++
T Consensus 3 t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 3a2e_A 3 TAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp CCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred cceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 456788998899999999999999999999998864 356776665 46799999999999999999999999999999
Q ss_pred hhhCCCCcceEEEccceEEEEecccc
Q 046481 106 RKNCPYSKSAKIFYDNCMLKYSNDKF 131 (247)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lRYs~~~f 131 (247)
++.||++++|+||+++|+||||+++|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.96 E-value=3.7e-29 Score=190.72 Aligned_cols=104 Identities=21% Similarity=0.490 Sum_probs=95.7
Q ss_pred CCCccccCCCCCcccCCcHHHHHHHHHHHHhHhcCCC--CCccccccCCCC-CeEEEEEEcCCCCCccchHHHHHHHHHH
Q 046481 28 NVDPISYSCSNENFTANGRYQTNLNALMGYIYHQAPP--TGFGIGSLGKNP-IQANGLALCRGDVSASDCKTCVADAIST 104 (247)
Q Consensus 28 ~~~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~--~~f~~~~~g~~~-~~vygl~qC~~Dls~~~C~~Cl~~a~~~ 104 (247)
..+++++.|++++++++++|++||+.||+.|+.+++. .+|+++++|.++ ++||||+||+||+++++|+.||+.|+.+
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999998763 368888888665 7999999999999999999999999999
Q ss_pred HhhhCCCCcceEEEccceEEEEecccc
Q 046481 105 IRKNCPYSKSAKIFYDNCMLKYSNDKF 131 (247)
Q Consensus 105 ~~~~C~~~~~a~i~~~~C~lRYs~~~f 131 (247)
+++.||++++|+||+++|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 999999999999999999999999997
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.95 E-value=2.3e-27 Score=180.75 Aligned_cols=102 Identities=23% Similarity=0.387 Sum_probs=93.3
Q ss_pred eEeeccccCCcchhhHHHHHHHHHHHHHHhccCCCceecccccccCCCcceEEEEEeecCCCChhhhHHHHHHHHhhccc
Q 046481 141 YFMWNVNNVGYPVIFNQKSKDLLRQLADEASGKPKLYAAGELELNEGSKKKIYGLAQCTRDLSYNDCKMGLDRIISDLPR 220 (247)
Q Consensus 141 ~~~~n~~~~s~~~~f~~~l~~ll~~L~~~a~~s~~~fa~g~~~~~~~~~~~vYglaQC~~dls~~dC~~CL~~a~~~i~~ 220 (247)
.+.+|.+++++++.|+.+|+.||..|+.+++.++.+|+++..+.. ++++||||+||++|+++.+|+.||+.++.+|++
T Consensus 7 ~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~--~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~~ 84 (108)
T 3a2e_A 7 SSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSG--GAPTAYGRATCKQSISQSDCTACLSNLVNRIFS 84 (108)
T ss_dssp EEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCST--TCCCEEEEEEECTTSCHHHHHHHHHHHHTTHHH
T ss_pred eeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCC--CCceEEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999877778887766543 568999999999999999999999999999999
Q ss_pred cCCCCcceEEEcCCeeEEEecCCC
Q 046481 221 CCDGKQGGRVVTGSCTIRYEIYPF 244 (247)
Q Consensus 221 ~c~~~~gg~v~~~~C~lRYe~~~F 244 (247)
+|++++||+||+++|+||||+++|
T Consensus 85 ~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 85 ICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HTTSBSSEEEEETTEEEEEESSCC
T ss_pred HCCCCceEEEECCCEEEEEeCCcC
Confidence 999999999999999999999998
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.94 E-value=7.1e-27 Score=178.07 Aligned_cols=106 Identities=22% Similarity=0.363 Sum_probs=94.3
Q ss_pred CCceeEeeccccCCcchhhHHHHHHHHHHHHHHhccCCCceecccccccCCCcceEEEEEeecCCCChhhhHHHHHHHHh
Q 046481 137 NGTKYFMWNVNNVGYPVIFNQKSKDLLRQLADEASGKPKLYAAGELELNEGSKKKIYGLAQCTRDLSYNDCKMGLDRIIS 216 (247)
Q Consensus 137 ~~~~~~~~n~~~~s~~~~f~~~l~~ll~~L~~~a~~s~~~fa~g~~~~~~~~~~~vYglaQC~~dls~~dC~~CL~~a~~ 216 (247)
..+.++.++.+++++++.|+.++..||.+|+.+|+.++.+|++++.+.+ ..++||||+||+|||++.+|+.||+.++.
T Consensus 3 t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~--~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 2e79_A 3 TAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSG--GAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCT--TCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCC--CCCcEEEEEecCCCCChHHHHHHHHHHHH
Confidence 3455677787889999999999999999999998765567888876542 34799999999999999999999999999
Q ss_pred hccccCCCCcceEEEcCCeeEEEecCCC
Q 046481 217 DLPRCCDGKQGGRVVTGSCTIRYEIYPF 244 (247)
Q Consensus 217 ~i~~~c~~~~gg~v~~~~C~lRYe~~~F 244 (247)
+++++|++++||+||+++|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 9999999999999999999999999998
No 5
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=19.11 E-value=42 Score=17.56 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=8.6
Q ss_pred CCcceEEEccc
Q 046481 111 YSKSAKIFYDN 121 (247)
Q Consensus 111 ~~~~a~i~~~~ 121 (247)
.++||++||-+
T Consensus 11 r~kgarlwyvg 21 (26)
T 1gff_3 11 KSKGARLWYVG 21 (26)
T ss_pred CCCceEEEEec
Confidence 46899999853
No 6
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=10.52 E-value=1e+02 Score=21.67 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=18.6
Q ss_pred ChhhhHHHHHHHHhhccccCC
Q 046481 203 SYNDCKMGLDRIISDLPRCCD 223 (247)
Q Consensus 203 s~~dC~~CL~~a~~~i~~~c~ 223 (247)
.-.-|+.|+.--..+-.++||
T Consensus 42 ~FPvCrpCyEYErkeG~q~Cp 62 (93)
T 1weo_A 42 GFPACRPCYEYERREGTQNCP 62 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCT
T ss_pred CChhhHHHHHHHHhccCcccc
Confidence 346799999999999999998
No 7
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=10.18 E-value=59 Score=17.07 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=8.1
Q ss_pred CCcceEEEcc
Q 046481 111 YSKSAKIFYD 120 (247)
Q Consensus 111 ~~~~a~i~~~ 120 (247)
.++||++||-
T Consensus 10 r~kgarlwyv 19 (26)
T 1m06_J 10 RRKGARLWYV 19 (26)
T ss_dssp CCSSSCCCCS
T ss_pred cCCceEEEEE
Confidence 4689999985
No 8
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=7.86 E-value=1.6e+02 Score=19.57 Aligned_cols=12 Identities=8% Similarity=0.559 Sum_probs=9.7
Q ss_pred ccceEEEEeccc
Q 046481 119 YDNCMLKYSNDK 130 (247)
Q Consensus 119 ~~~C~lRYs~~~ 130 (247)
-..|++||+|.+
T Consensus 41 ~~~ClV~FeD~S 52 (69)
T 2xk0_A 41 SDQYLIRFDDQS 52 (69)
T ss_dssp SSCEEEEETTCC
T ss_pred CceEEEEecCCc
Confidence 457999999875
No 9
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=6.31 E-value=1.9e+02 Score=17.76 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHHHhhhCCC
Q 046481 92 SDCKTCVADAISTIRKNCPY 111 (247)
Q Consensus 92 ~~C~~Cl~~a~~~~~~~C~~ 111 (247)
.-|..|+......-...||-
T Consensus 29 ~fC~~Ci~~~~~~~~~~CP~ 48 (65)
T 1g25_A 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhHHHHHHHHHHcCCCcCCC
Confidence 46999999986654456874
No 10
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=6.24 E-value=2e+02 Score=17.45 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=13.6
Q ss_pred cchHHHHHHHHHH--HhhhCC
Q 046481 92 SDCKTCVADAIST--IRKNCP 110 (247)
Q Consensus 92 ~~C~~Cl~~a~~~--~~~~C~ 110 (247)
.-|..|+...... -...||
T Consensus 41 ~fC~~Ci~~~~~~~~~~~~CP 61 (63)
T 2ysj_A 41 NFCLKCITQIGETSCGFFKCP 61 (63)
T ss_dssp EECHHHHHHHHHHCSSCCCCS
T ss_pred cchHHHHHHHHHcCCCCCcCc
Confidence 4699999998874 233566
Done!