Query 046481
Match_columns 247
No_of_seqs 167 out of 1449
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 22:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046481.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046481hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g25a_ g.44.1.1 (A:) TFIIH Ma 11.0 42 0.0031 19.9 1.2 20 92-111 29-48 (65)
2 d1weoa_ g.44.1.1 (A:) Cellulos 7.1 83 0.0061 20.3 1.4 21 203-223 42-62 (93)
3 d1rmda2 g.44.1.1 (A:1-86) V(D) 6.1 1E+02 0.0074 19.4 1.5 21 91-111 43-63 (86)
4 d1vqoe2 d.141.1.1 (E:80-172) R 5.4 1.2E+02 0.0087 19.7 1.4 30 96-125 60-90 (93)
5 d1ur6b_ g.44.1.1 (B:) Not-4 N- 4.9 72 0.0052 17.9 -0.0 21 91-111 24-44 (52)
6 d1ha9a_ g.3.2.1 (A:) Trypsin i 4.7 78 0.0057 16.3 0.1 7 82-88 12-18 (34)
7 d1w7ja1 b.34.3.1 (A:5-62) Myos 4.5 1.3E+02 0.0096 17.6 1.1 11 112-122 4-14 (58)
8 d1f32a_ d.62.1.1 (A:) Pepsin i 4.5 2.1E+02 0.016 19.9 2.3 20 106-125 62-81 (147)
9 d1fbva4 g.44.1.1 (A:356-434) C 4.3 1.4E+02 0.01 18.1 1.2 20 92-111 44-63 (79)
10 d2o35a1 a.293.1.1 (A:2-80) Hyp 4.1 1.8E+02 0.013 18.1 1.5 16 91-106 38-53 (79)
No 1
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.01 E-value=42 Score=19.92 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHhhhCCC
Q 046481 92 SDCKTCVADAISTIRKNCPY 111 (247)
Q Consensus 92 ~~C~~Cl~~a~~~~~~~C~~ 111 (247)
.-|..||......-.+.||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 56999999998776667985
No 2
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.08 E-value=83 Score=20.31 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=18.2
Q ss_pred ChhhhHHHHHHHHhhccccCC
Q 046481 203 SYNDCKMGLDRIISDLPRCCD 223 (247)
Q Consensus 203 s~~dC~~CL~~a~~~i~~~c~ 223 (247)
.-.-|+.|..--..+-.++||
T Consensus 42 ~FPvCrpCyEYErkeG~q~Cp 62 (93)
T d1weoa_ 42 GFPACRPCYEYERREGTQNCP 62 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCT
T ss_pred CCccchHHHHHHHhccCccCc
Confidence 346799999999999999998
No 3
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.15 E-value=1e+02 Score=19.43 Aligned_cols=21 Identities=19% Similarity=0.637 Sum_probs=16.1
Q ss_pred ccchHHHHHHHHHHHhhhCCC
Q 046481 91 ASDCKTCVADAISTIRKNCPY 111 (247)
Q Consensus 91 ~~~C~~Cl~~a~~~~~~~C~~ 111 (247)
-.-|+.||......-...||.
T Consensus 43 H~FC~~Ci~~~~~~~~~~CP~ 63 (86)
T d1rmda2 43 HLFCRICILRCLKVMGSYCPS 63 (86)
T ss_dssp CEEEHHHHHHHHHHTCSBCTT
T ss_pred ChhhHHHHHHHHhhCCCcCcc
Confidence 357999999998765556885
No 4
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=5.41 E-value=1.2e+02 Score=19.71 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhhCCC-CcceEEEccceEEE
Q 046481 96 TCVADAISTIRKNCPY-SKSAKIFYDNCMLK 125 (247)
Q Consensus 96 ~Cl~~a~~~~~~~C~~-~~~a~i~~~~C~lR 125 (247)
.=+...++.|.+.|-- .++-|++.|+.++-
T Consensus 60 E~V~qtAA~Ieq~t~vk~kD~R~FlDGIYv~ 90 (93)
T d1vqoe2 60 EAVGQTAADIEQLTRINDKDVRVFQDGVYIT 90 (93)
T ss_dssp HHHHHHHHHHHHTTCCSSSCTTTCCCEEEEE
T ss_pred HHHHHHHHHHHHhhccCCCCccEeecCEEEE
Confidence 3355666778888874 47889999998863
No 5
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.87 E-value=72 Score=17.88 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=15.4
Q ss_pred ccchHHHHHHHHHHHhhhCCC
Q 046481 91 ASDCKTCVADAISTIRKNCPY 111 (247)
Q Consensus 91 ~~~C~~Cl~~a~~~~~~~C~~ 111 (247)
-.-|..|+......-...||.
T Consensus 24 H~~c~~C~~~w~~~~~~~CP~ 44 (52)
T d1ur6b_ 24 YQICRFCWHRIRTDENGLCPA 44 (52)
T ss_dssp CCCCHHHHHHHTTTSCCBCTT
T ss_pred CccchHHHHHHHhhcCCCCCc
Confidence 356999999987655556875
No 6
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=4.75 E-value=78 Score=16.28 Aligned_cols=7 Identities=57% Similarity=1.018 Sum_probs=5.2
Q ss_pred EEEcCCC
Q 046481 82 LALCRGD 88 (247)
Q Consensus 82 l~qC~~D 88 (247)
|-+|++|
T Consensus 12 lkkcrrd 18 (34)
T d1ha9a_ 12 LKKCRRD 18 (34)
T ss_dssp CCBCSSG
T ss_pred HHHhccc
Confidence 4578888
No 7
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=4.53 E-value=1.3e+02 Score=17.61 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=8.3
Q ss_pred CcceEEEccce
Q 046481 112 SKSAKIFYDNC 122 (247)
Q Consensus 112 ~~~a~i~~~~C 122 (247)
.+|+|||.+.-
T Consensus 4 ~kgtRvWiPd~ 14 (58)
T d1w7ja1 4 TKYARVWIPDP 14 (58)
T ss_dssp CTTCEEEEEET
T ss_pred ccCcEEEEECc
Confidence 57899998743
No 8
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=4.46 E-value=2.1e+02 Score=19.88 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=16.8
Q ss_pred hhhCCCCcceEEEccceEEE
Q 046481 106 RKNCPYSKSAKIFYDNCMLK 125 (247)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lR 125 (247)
++-|.....-..+.|+|+++
T Consensus 62 PsFCt~~DTtq~yFdgCmVq 81 (147)
T d1f32a_ 62 PPFCGPQDMKMFNFVGCSVL 81 (147)
T ss_dssp CGGGCCTTCEEEEETTEEEE
T ss_pred CCCCCcCcceEEEEeeeEEE
Confidence 46788878888899999997
No 9
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.32 E-value=1.4e+02 Score=18.11 Aligned_cols=20 Identities=20% Similarity=0.683 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHHHhhhCCC
Q 046481 92 SDCKTCVADAISTIRKNCPY 111 (247)
Q Consensus 92 ~~C~~Cl~~a~~~~~~~C~~ 111 (247)
.-|..|+......=.+.||-
T Consensus 44 ~fC~~Ci~~wl~~~~~~CP~ 63 (79)
T d1fbva4 44 LMCTSCLTSWQESEGQGCPF 63 (79)
T ss_dssp EECHHHHHHHHHTTCCSCTT
T ss_pred eeeHHHHHHHHHHCcCcCCC
Confidence 56999999987643456885
No 10
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=4.10 E-value=1.8e+02 Score=18.12 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=11.9
Q ss_pred ccchHHHHHHHHHHHh
Q 046481 91 ASDCKTCVADAISTIR 106 (247)
Q Consensus 91 ~~~C~~Cl~~a~~~~~ 106 (247)
+.-|+.||+....+..
T Consensus 38 aGFCRNCLskWy~~~a 53 (79)
T d2o35a1 38 AGFCRNCLSNWYREAA 53 (79)
T ss_dssp HSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3569999998876544
Done!