BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046486
         (202 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O88420|SCN8A_RAT Sodium channel protein type 8 subunit alpha OS=Rattus norvegicus
           GN=Scn8a PE=1 SV=1
          Length = 1978

 Score = 32.0 bits (71), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 64  TIEILKPDEKRLKDNK--KPPQQDGDNKKPDNKKPPQPDGE 102
           T E L   E+R+ ++K  KPP+ DG +++ D    P+P+ +
Sbjct: 18  TPESLANIERRIAESKLKKPPKADGSHREDDEDSKPKPNSD 58


>sp|Q9WTU3|SCN8A_MOUSE Sodium channel protein type 8 subunit alpha OS=Mus musculus
           GN=Scn8a PE=1 SV=1
          Length = 1978

 Score = 32.0 bits (71), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 64  TIEILKPDEKRLKDNK--KPPQQDGDNKKPDNKKPPQPDGE 102
           T E L   E+R+ ++K  KPP+ DG +++ D    P+P+ +
Sbjct: 18  TPESLANIERRIAESKLKKPPKADGSHREDDEDSKPKPNSD 58


>sp|Q9UQD0|SCN8A_HUMAN Sodium channel protein type 8 subunit alpha OS=Homo sapiens
           GN=SCN8A PE=1 SV=1
          Length = 1980

 Score = 32.0 bits (71), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 64  TIEILKPDEKRLKDNK--KPPQQDGDNKKPDNKKPPQPDGE 102
           T E L   E+R+ ++K  KPP+ DG +++ D    P+P+ +
Sbjct: 18  TPESLANIERRIAESKLKKPPKADGSHREDDEDSKPKPNSD 58


>sp|A7I781|RFCL_METB6 Replication factor C large subunit OS=Methanoregula boonei (strain
           6A8) GN=rfcL PE=3 SV=1
          Length = 481

 Score = 31.2 bits (69), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 7   LSCSKCRKKVKKV----LCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVI 62
           +S +K +K ++      L    Q+ + +  EK   +   +V   PE    +L    +G  
Sbjct: 331 MSVAKKQKAIRAAVLSRLAATMQLPQATLREKYMDIITLLVDLDPETFARELALDADG-- 388

Query: 63  KTIEILKPDEKRLKDNKKPPQQDGDNKKPDNKKPPQPDGENPKLPLVPVPCYPPV 117
             +     D+ R ++  K   +    K+P+ KK  +   E+P     P P   PV
Sbjct: 389 --LNFFLNDKSRAQEILKSLAKVEREKEPEPKKKGRKKAESPAKDADPAPAVDPV 441


>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2
          Length = 3898

 Score = 31.2 bits (69), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 46   SPEEIRDKLCCKGEGVIKTIEILKPDEKRLKDNKKPPQQDGDNKKPD 92
            +PEE   K+  K    IKT + L+ + K+ +D KK P+QDG +   D
Sbjct: 2542 TPEEEMFKMVTK----IKTFDELEQEAKQKRDYKKEPRQDGSSSASD 2584


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.139    0.492 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,354,853
Number of Sequences: 539616
Number of extensions: 4493256
Number of successful extensions: 14942
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 14674
Number of HSP's gapped (non-prelim): 311
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)