Query 046486
Match_columns 202
No_of_seqs 156 out of 1197
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 22:17:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iwl_A Copper transport protei 99.5 1.2E-13 3.9E-18 94.1 7.8 63 2-70 5-67 (68)
2 1cc8_A Protein (metallochapero 99.4 2E-12 6.9E-17 88.2 8.4 63 2-69 8-71 (73)
3 4a4j_A Pacszia, cation-transpo 99.4 3.5E-12 1.2E-16 85.5 9.0 64 1-68 4-69 (69)
4 3dxs_X Copper-transporting ATP 99.3 4.4E-12 1.5E-16 86.3 8.0 65 2-70 5-72 (74)
5 2crl_A Copper chaperone for su 99.3 1.3E-11 4.6E-16 90.8 8.8 67 2-73 22-88 (98)
6 3fry_A Probable copper-exporti 99.3 1.5E-11 5E-16 84.5 7.2 62 2-70 8-70 (73)
7 2roe_A Heavy metal binding pro 99.2 2.4E-11 8.3E-16 80.3 7.1 63 1-68 2-65 (66)
8 1cpz_A Protein (COPZ); copper 99.2 1.1E-10 3.9E-15 75.9 9.2 63 1-67 2-67 (68)
9 2kt2_A Mercuric reductase; nme 99.2 1E-10 3.4E-15 77.0 8.3 64 1-68 2-67 (69)
10 2xmm_A SSR2857 protein, ATX1; 99.2 3E-11 1E-15 77.8 5.6 56 2-59 4-60 (64)
11 2xmw_A PACS-N, cation-transpor 99.2 2.2E-10 7.7E-15 75.0 8.8 57 2-59 6-64 (71)
12 1aw0_A Menkes copper-transport 99.1 1.7E-10 5.7E-15 76.1 8.1 63 2-68 6-71 (72)
13 3cjk_B Copper-transporting ATP 99.1 2.8E-10 9.7E-15 76.2 9.0 64 1-68 4-70 (75)
14 1osd_A MERP, hypothetical prot 99.1 2.2E-10 7.6E-15 75.5 8.2 57 2-59 6-65 (72)
15 2l3m_A Copper-ION-binding prot 99.1 3.6E-10 1.2E-14 74.5 8.6 57 2-59 8-67 (71)
16 2g9o_A Copper-transporting ATP 99.1 2.4E-10 8.1E-15 81.6 8.3 67 1-71 5-77 (90)
17 1yg0_A COP associated protein; 99.1 2.6E-10 9E-15 73.7 6.9 57 2-59 4-62 (66)
18 1q8l_A Copper-transporting ATP 99.1 2.7E-10 9.3E-15 79.2 7.3 65 2-70 12-79 (84)
19 1fvq_A Copper-transporting ATP 99.1 3.2E-10 1.1E-14 74.7 7.2 64 2-69 5-70 (72)
20 1mwy_A ZNTA; open-faced beta-s 99.1 8.2E-10 2.8E-14 73.9 9.3 62 2-67 6-68 (73)
21 2qif_A Copper chaperone COPZ; 99.1 7.4E-10 2.5E-14 71.0 8.7 58 2-60 5-65 (69)
22 1kvi_A Copper-transporting ATP 99.1 4.1E-10 1.4E-14 76.3 7.4 64 2-69 11-77 (79)
23 1yjr_A Copper-transporting ATP 99.0 8.6E-10 2.9E-14 73.1 7.8 63 2-68 7-72 (75)
24 2k2p_A Uncharacterized protein 99.0 2.8E-10 9.5E-15 81.5 5.3 56 2-59 25-81 (85)
25 2kyz_A Heavy metal binding pro 99.0 2.8E-10 9.7E-15 75.4 4.9 55 2-60 4-59 (67)
26 1opz_A Potential copper-transp 99.0 1.2E-09 4.3E-14 72.1 7.8 62 2-67 9-73 (76)
27 1y3j_A Copper-transporting ATP 99.0 5.1E-10 1.8E-14 75.6 6.0 65 1-69 5-72 (77)
28 2ldi_A Zinc-transporting ATPas 99.0 9.8E-10 3.3E-14 71.3 6.4 58 2-60 6-66 (71)
29 2ew9_A Copper-transporting ATP 99.0 1.7E-09 6E-14 81.1 7.8 62 2-67 83-147 (149)
30 1qup_A Superoxide dismutase 1 98.9 1.9E-09 6.6E-14 91.3 8.5 66 2-72 9-74 (222)
31 1jww_A Potential copper-transp 98.9 2.3E-09 7.9E-14 72.0 7.1 64 2-69 6-72 (80)
32 1p6t_A Potential copper-transp 98.9 3.1E-09 1.1E-13 80.3 7.5 66 2-71 77-145 (151)
33 2kkh_A Putative heavy metal tr 98.9 8.3E-09 2.8E-13 73.5 8.7 66 2-71 19-87 (95)
34 2ofg_X Zinc-transporting ATPas 98.9 1.1E-08 3.6E-13 76.1 8.6 58 2-60 11-71 (111)
35 1jk9_B CCS, copper chaperone f 98.8 5.4E-09 1.9E-13 90.2 7.5 65 2-71 10-74 (249)
36 2rop_A Copper-transporting ATP 98.8 1.4E-08 4.8E-13 81.7 8.2 65 2-70 125-192 (202)
37 2aj0_A Probable cadmium-transp 98.7 2.9E-08 1E-12 66.1 6.6 52 2-59 6-58 (71)
38 2ew9_A Copper-transporting ATP 98.7 4.9E-08 1.7E-12 73.1 8.2 64 2-69 7-73 (149)
39 2rop_A Copper-transporting ATP 98.4 3.4E-07 1.2E-11 73.5 6.8 56 2-58 23-81 (202)
40 1p6t_A Potential copper-transp 98.3 2.6E-06 9E-11 64.1 7.9 58 2-60 9-69 (151)
41 3j09_A COPA, copper-exporting 98.2 4.1E-06 1.4E-10 80.9 8.6 57 2-59 5-64 (723)
42 2x3d_A SSO6206; unknown functi 95.4 0.031 1.1E-06 42.4 5.8 59 14-73 21-86 (96)
43 3bpd_A Uncharacterized protein 95.3 0.039 1.3E-06 42.1 6.1 57 14-71 22-85 (100)
44 2raq_A Conserved protein MTH88 95.2 0.03 1E-06 42.6 5.2 58 15-73 23-87 (97)
45 2jsx_A Protein NAPD; TAT, proo 88.8 2.4 8.2E-05 31.3 8.2 57 13-70 19-77 (95)
46 2cpq_A FragIle X mental retard 79.8 5.4 0.00019 29.4 6.4 39 15-55 35-73 (91)
47 3cq1_A Putative uncharacterize 72.9 3.9 0.00013 29.8 4.0 32 3-34 45-82 (103)
48 3lno_A Putative uncharacterize 70.9 3.6 0.00012 30.4 3.5 33 2-34 47-86 (108)
49 3lvj_C Sulfurtransferase TUSA; 68.0 23 0.0008 24.6 7.1 50 2-61 12-63 (82)
50 1uwd_A Hypothetical protein TM 67.5 5.7 0.0002 28.8 3.9 32 3-34 46-83 (103)
51 1owx_A Lupus LA protein, SS-B, 65.8 30 0.001 26.3 7.9 53 1-55 19-74 (121)
52 1jdq_A TM006 protein, hypothet 65.3 25 0.00087 25.6 7.1 52 3-64 29-82 (98)
53 4ar0_A Type IV pilus biogenesi 55.5 32 0.0011 26.2 6.4 46 13-59 43-89 (128)
54 3pro_C Alpha-lytic protease; P 55.3 29 0.00098 28.1 6.3 45 23-68 113-157 (166)
55 3hz7_A Uncharacterized protein 48.8 35 0.0012 24.2 5.3 52 2-62 3-56 (87)
56 2nyt_A Probable C->U-editing e 45.7 17 0.00057 29.9 3.5 61 2-70 86-147 (190)
57 1wg1_A KIAA1579 protein, homol 37.8 71 0.0024 21.2 5.3 54 3-59 8-62 (88)
58 1je3_A EC005, hypothetical 8.6 36.6 36 0.0012 24.8 3.8 52 3-64 30-83 (97)
59 2y3m_A Emhofq, protein transpo 36.6 57 0.002 25.1 5.2 43 13-55 117-164 (175)
60 2ctf_A Vigilin; K homology typ 36.2 75 0.0026 23.1 5.5 28 15-43 48-75 (102)
61 2k1h_A Uncharacterized protein 35.6 1.1E+02 0.0037 22.4 6.3 39 15-55 40-79 (94)
62 1qd1_A Formiminotransferase-cy 33.9 25 0.00086 31.6 3.0 53 13-69 19-73 (325)
63 1ju8_A Leginsulin, albumin 1; 32.6 15 0.00052 23.2 1.0 23 165-188 2-24 (37)
64 1pav_A Hypothetical protein TA 32.0 31 0.0011 23.5 2.6 47 3-59 9-57 (78)
65 3gzb_A Putative snoal-like pol 29.1 41 0.0014 27.1 3.2 34 22-55 119-152 (154)
66 2v50_A Multidrug resistance pr 28.6 72 0.0025 31.7 5.6 45 13-57 159-210 (1052)
67 2ytc_A PRE-mRNA-splicing facto 28.3 1.2E+02 0.0042 19.5 6.6 51 3-55 15-66 (85)
68 2ko1_A CTR148A, GTP pyrophosph 27.4 77 0.0026 20.8 4.0 21 46-68 58-78 (88)
69 4dx5_A Acriflavine resistance 27.3 79 0.0027 31.3 5.6 44 14-57 160-210 (1057)
70 1x4g_A Nucleolysin TIAR; struc 26.4 1.6E+02 0.0054 20.2 7.0 56 2-59 27-83 (109)
71 1p8b_A PEA albumin 1, subunit 26.1 16 0.00054 23.1 0.2 24 165-189 2-25 (37)
72 2lxi_A RNA-binding protein 10; 25.6 36 0.0012 23.3 2.1 34 35-69 1-36 (91)
73 2kgs_A Uncharacterized protein 25.6 21 0.00073 27.2 0.9 30 18-48 68-97 (132)
74 2c5s_A THII, probable thiamine 25.1 1.1E+02 0.0037 27.2 5.6 45 12-59 37-81 (413)
75 1r7h_A NRDH-redoxin; thioredox 24.8 83 0.0028 19.5 3.6 31 1-33 1-33 (75)
76 2ct6_A SH3 domain-binding glut 24.6 79 0.0027 22.5 3.9 28 6-34 15-47 (111)
77 2cpj_A Non-POU domain-containi 24.5 1.6E+02 0.0056 19.7 6.8 52 2-55 17-69 (99)
78 1sif_A Ubiquitin; hydrophobic 23.7 1.2E+02 0.0042 20.6 4.6 47 23-69 7-54 (88)
79 3q9p_A Heat shock protein beta 23.6 55 0.0019 22.6 2.8 22 22-43 14-37 (85)
80 1wh9_A 40S ribosomal protein S 23.2 92 0.0032 22.5 4.0 45 15-59 11-69 (92)
81 3beg_B Splicing factor, argini 22.6 2E+02 0.007 20.1 5.9 54 3-59 19-73 (115)
82 1x4a_A Splicing factor, argini 22.3 1.9E+02 0.0066 19.7 7.1 56 2-59 24-83 (109)
83 4f3q_A Transcriptional regulat 22.2 1.1E+02 0.0037 26.2 4.8 42 25-68 162-203 (247)
84 3pgw_S U1-70K; protein-RNA com 21.5 3E+02 0.01 24.6 7.8 56 2-59 104-166 (437)
85 3ex7_B RNA-binding protein 8A; 21.3 2.1E+02 0.0074 19.9 7.1 56 2-59 24-86 (126)
86 2la4_A Nuclear and cytoplasmic 21.1 1.9E+02 0.0066 19.3 7.8 56 2-59 29-85 (101)
87 2cq3_A RNA-binding protein 9; 21.1 2E+02 0.0067 19.4 8.4 53 2-56 17-74 (103)
88 2y9k_A Protein INVG; protein t 21.0 1.1E+02 0.0037 22.9 4.2 43 13-55 86-131 (137)
89 1pqx_A Conserved hypothetical 20.5 96 0.0033 22.6 3.6 41 15-57 40-81 (91)
90 1why_A Hypothetical protein ri 20.3 2E+02 0.0068 19.1 7.0 55 3-59 20-75 (97)
91 1x4c_A Splicing factor, argini 20.2 2.2E+02 0.0074 19.5 8.3 55 2-59 17-72 (108)
No 1
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.48 E-value=1.2e-13 Score=94.14 Aligned_cols=63 Identities=27% Similarity=0.406 Sum_probs=59.3
Q ss_pred EEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486 2 VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKP 70 (202)
Q Consensus 2 vLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp 70 (202)
+|+|+|+|.+|+++|+++|.+++|| ++++|+.+++++|.+ .++++.|+++|+ ++| +.++++++
T Consensus 5 ~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~-~~~~~~i~~~i~-~~G---y~~~~~~~ 67 (68)
T 3iwl_A 5 EFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIES-EHSMDTLLATLK-KTG---KTVSYLGL 67 (68)
T ss_dssp EEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEE-SSCHHHHHHHHH-TTC---SCEEEEEC
T ss_pred EEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEe-cCCHHHHHHHHH-HcC---CceEecCC
Confidence 5788999999999999999999999 999999999999999 799999999999 889 88888875
No 2
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=99.37 E-value=2e-12 Score=88.22 Aligned_cols=63 Identities=24% Similarity=0.340 Sum_probs=57.5
Q ss_pred EEEEcccChhhHHHHHHHHhcCC-CceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486 2 VLKVDLSCSKCRKKVKKVLCKFP-QIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILK 69 (202)
Q Consensus 2 vLKV~M~C~gCakKIkKaL~ki~-GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVs 69 (202)
+|+|+|+|.+|+++|+++|.+++ ||.+++||+.+++++|.+ ..+.+.|.++|+ ++| +.+++++
T Consensus 8 ~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~-~~~~~~i~~~i~-~~G---y~~~~~~ 71 (73)
T 1cc8_A 8 QFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYT-TLPYDFILEKIK-KTG---KEVRSGK 71 (73)
T ss_dssp EEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEE-SSCHHHHHHHHH-TTS---SCEEEEE
T ss_pred EEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEE-eCCHHHHHHHHH-HhC---CCceeee
Confidence 57889999999999999999999 999999999999999998 789999999999 889 5666553
No 3
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=99.36 E-value=3.5e-12 Score=85.47 Aligned_cols=64 Identities=14% Similarity=0.404 Sum_probs=57.6
Q ss_pred CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486 1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKTIEIL 68 (202)
Q Consensus 1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~aEIV 68 (202)
++|+| +|+|.+|+++|+++|.+++||.++.||+.+++++|... ..+++.|.++|+ ++| +.++++
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G---y~~~~~ 69 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE-RAG---YHARVL 69 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHH-HTT---CEEEEC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHH-HcC---CceEeC
Confidence 36889 89999999999999999999999999999999999832 689999999999 889 676654
No 4
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=99.33 E-value=4.4e-12 Score=86.31 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=58.8
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKP 70 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp 70 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+ .++.+.|+++|+ ++| +.+++++.
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~ 72 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIE-DAG---FEAEILAE 72 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHH-HHT---CEEEEEEE
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HCC---CceEEccC
Confidence 5889 89999999999999999999999999999999999864 368999999999 889 77777753
No 5
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=90.78 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=61.4
Q ss_pred EEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCC
Q 046486 2 VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEK 73 (202)
Q Consensus 2 vLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kp 73 (202)
+|+|+|+|.+|+++|+++|.+++||.++.||+.+++++|.+ .++.+.|+++|+ ++| +.++++.....
T Consensus 22 ~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~-~~~~~~i~~~i~-~~G---y~~~~~~~~~~ 88 (98)
T 2crl_A 22 EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHT-TLPSQEVQALLE-GTG---RQAVLKGMGSG 88 (98)
T ss_dssp EEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEE-SSCHHHHHHHHH-TTT---SCEEEEESCCC
T ss_pred EEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEE-eCCHHHHHHHHH-HhC---CceEEccCCCC
Confidence 68889999999999999999999999999999999999998 689999999999 889 78888876543
No 6
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=99.25 E-value=1.5e-11 Score=84.48 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=57.6
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKP 70 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp 70 (202)
+|+| +|+|.+|+.+|+++|.+ +||.++.||+.+++++|.. . +.+.|+++|+ ++| +.++++++
T Consensus 8 ~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~-~-~~~~i~~~i~-~~G---y~~~~~~~ 70 (73)
T 3fry_A 8 VLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNK-E-DVDKYIKAVE-AAG---YQAKLRSS 70 (73)
T ss_dssp EEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEG-G-GHHHHHHHHH-HTT---CEEEECCS
T ss_pred EEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEE-C-CHHHHHHHHH-HcC---CceEecCc
Confidence 6889 89999999999999999 9999999999999999999 5 9999999999 889 78888764
No 7
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=99.23 E-value=2.4e-11 Score=80.26 Aligned_cols=63 Identities=21% Similarity=0.411 Sum_probs=56.3
Q ss_pred CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEc
Q 046486 1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEIL 68 (202)
Q Consensus 1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIV 68 (202)
++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+ ..+.+.|.++|+ ++| +.++.+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~-~~~~~~i~~~i~-~~G---y~~~~~ 65 (66)
T 2roe_A 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEG-TADPKALVQAVE-EEG---YKAEVL 65 (66)
T ss_dssp BCEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECS-CCCHHHHHHHHH-TTT---CEEEEC
T ss_pred EEEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECC-CCCHHHHHHHHH-HcC---CCcEec
Confidence 35889 8999999999999999999999999999999999965 689999999999 889 555544
No 8
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=99.20 E-value=1.1e-10 Score=75.87 Aligned_cols=63 Identities=14% Similarity=0.316 Sum_probs=55.8
Q ss_pred CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEE
Q 046486 1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEI 67 (202)
Q Consensus 1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEI 67 (202)
++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.+.|. ++| +.+++
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~ 67 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAIN-ELG---YQAEV 67 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-TTS---SCEEE
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CCccc
Confidence 47899 89999999999999999999999999999999999874 367899999999 888 55554
No 9
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=99.18 E-value=1e-10 Score=77.02 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=56.0
Q ss_pred CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486 1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKTIEIL 68 (202)
Q Consensus 1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~aEIV 68 (202)
++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|. ++| +.+.+.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G---y~~~~~ 67 (69)
T 2kt2_A 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVA-GLG---YKATLA 67 (69)
T ss_dssp CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHH-TTT---SEEECC
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHH-HCC---CceEeC
Confidence 46889 99999999999999999999999999999999999864 367899999999 888 555543
No 10
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=99.18 E-value=3e-11 Score=77.80 Aligned_cols=56 Identities=21% Similarity=0.359 Sum_probs=52.8
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+ ..+.+.|.++|. ++|
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~-~~~~~~i~~~i~-~~G 60 (64)
T 2xmm_A 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITS-ALGEEQLRTAIA-SAG 60 (64)
T ss_dssp EEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEEC-SSCHHHHHHHHH-HTT
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEe-cCCHHHHHHHHH-HcC
Confidence 5788 8999999999999999999999999999999999997 688999999999 778
No 11
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=99.15 E-value=2.2e-10 Score=75.03 Aligned_cols=57 Identities=14% Similarity=0.404 Sum_probs=51.0
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtG 59 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|. ++|
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G 64 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE-RAG 64 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHH-HHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHH-HcC
Confidence 5888 89999999999999999999999999999999999864 367888999998 778
No 12
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=99.15 E-value=1.7e-10 Score=76.09 Aligned_cols=63 Identities=17% Similarity=0.351 Sum_probs=55.6
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEIL 68 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIV 68 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|. ++| +.+.++
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~~ 71 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIE-DMG---FDATLS 71 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---CEEEEC
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHH-HCC---CCcEeC
Confidence 6889 89999999999999999999999999999999999874 267889999999 778 555553
No 13
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=99.14 E-value=2.8e-10 Score=76.16 Aligned_cols=64 Identities=13% Similarity=0.237 Sum_probs=55.9
Q ss_pred CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486 1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEIL 68 (202)
Q Consensus 1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIV 68 (202)
+.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|. ++| +.++++
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~ 70 (75)
T 3cjk_B 4 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID-DMG---FDAVIH 70 (75)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HTT---CCEEEE
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CceEee
Confidence 36889 99999999999999999999999999999999999864 357899999999 888 555554
No 14
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=99.13 E-value=2.2e-10 Score=75.47 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=52.4
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG 59 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|. ++|
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G 65 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATA-DAG 65 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHH-HTT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcC
Confidence 5888 89999999999999999999999999999999999864 367889999999 788
No 15
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=99.12 E-value=3.6e-10 Score=74.45 Aligned_cols=57 Identities=14% Similarity=0.312 Sum_probs=52.3
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG 59 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|. ++|
T Consensus 8 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G 67 (71)
T 2l3m_A 8 TLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIE-DQG 67 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHH-HTT
T ss_pred EEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC
Confidence 5889 89999999999999999999999999999999999864 467899999999 778
No 16
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=99.11 E-value=2.4e-10 Score=81.64 Aligned_cols=67 Identities=12% Similarity=0.256 Sum_probs=58.3
Q ss_pred CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhc---CCceeeEEEcCCC
Q 046486 1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKG---EGVIKTIEILKPD 71 (202)
Q Consensus 1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~Kt---Gk~iK~aEIVsp~ 71 (202)
++|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+ .++.+.|.++|. ++ | +.+.++++.
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~-~~g~Gg---y~~~~~~~~ 77 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE-AVSPGL---YRVSITSEV 77 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHH-TTSTTT---CEEECCCCC
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHH-hccCCC---eEEEEeCCC
Confidence 36888 99999999999999999999999999999999999864 357889999999 77 6 677777654
No 17
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=99.09 E-value=2.6e-10 Score=73.70 Aligned_cols=57 Identities=14% Similarity=0.381 Sum_probs=51.4
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtG 59 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|. ++|
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G 62 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALL-DAG 62 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHH-HHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcC
Confidence 5777 89999999999999999999999999999999999864 357889999998 777
No 18
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=99.09 E-value=2.7e-10 Score=79.24 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=57.3
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKP 70 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp 70 (202)
.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|. ++| +.++++..
T Consensus 12 ~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~ 79 (84)
T 1q8l_A 12 KMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE-AMG---FPAFVKKQ 79 (84)
T ss_dssp EEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHH-HTT---CCEECSCC
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CceEecCC
Confidence 6889 99999999999999999999999999999999999874 357889999999 889 66666554
No 19
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=99.08 E-value=3.2e-10 Score=74.71 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=56.0
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKTIEILK 69 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~aEIVs 69 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|. ++| +.++++.
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G---~~~~~~~ 70 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIE-DCG---FDCEILR 70 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHH-HHT---CCEEEEE
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHH-HCC---CceEEcc
Confidence 5788 89999999999999999999999999999999999863 467889999999 778 5666653
No 20
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=99.08 E-value=8.2e-10 Score=73.92 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=53.4
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEE
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEI 67 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEI 67 (202)
.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+....+.|.++|. ++| +.+..
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~-~~G---y~~~~ 68 (73)
T 1mwy_A 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQ-KAG---YSLRD 68 (73)
T ss_dssp EEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHH-HHT---CEEEE
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHH-HcC---Ccccc
Confidence 5888 89999999999999999999999999999999999874323678888898 778 55543
No 21
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=99.08 E-value=7.4e-10 Score=71.02 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=52.4
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEG 60 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk 60 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.+.|. ++|+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~ 65 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIE-DQGY 65 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HTTC
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCC
Confidence 5888 89999999999999999999999999999999999864 367889999999 7783
No 22
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=99.07 E-value=4.1e-10 Score=76.29 Aligned_cols=64 Identities=13% Similarity=0.233 Sum_probs=56.2
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILK 69 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVs 69 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|. ++| +.+++.+
T Consensus 11 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~ 77 (79)
T 1kvi_A 11 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID-DMG---FDAVIHN 77 (79)
T ss_dssp EEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHH-HHC---CCEEECC
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HCC---CceEecC
Confidence 5888 99999999999999999999999999999999999864 357889999999 778 5666554
No 23
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=99.03 E-value=8.6e-10 Score=73.13 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=54.3
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEIL 68 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIV 68 (202)
.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|. ++| +.+.+.
T Consensus 7 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~~ 72 (75)
T 1yjr_A 7 ELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIE-SLG---FEPSLV 72 (75)
T ss_dssp EEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHH-HHH---CEEEES
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CCceee
Confidence 6889 99999999999999999999999999999999999874 246788999998 778 555543
No 24
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=99.02 E-value=2.8e-10 Score=81.53 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=53.2
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
+|+| +|+|.+|+++|+++|.+++||.++.||+.+++++|.. .++.+.|.++|+ ++|
T Consensus 25 ~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~-~~~~~~i~~~i~-~~G 81 (85)
T 2k2p_A 25 SFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGG-VSDAAHIAEIIT-AAG 81 (85)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEES-CCCHHHHHHHHH-HTT
T ss_pred EEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEe-cCCHHHHHHHHH-HcC
Confidence 6888 8999999999999999999999999999999999998 689999999999 788
No 25
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=99.02 E-value=2.8e-10 Score=75.45 Aligned_cols=55 Identities=22% Similarity=0.420 Sum_probs=49.7
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk 60 (202)
+|+| +|+|.+|+.+|+++|.++ ||.++.+|+.+++++|.. ..+ +.|.++|+ ++|+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~-~~~-~~i~~~i~-~~Gy 59 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVET-ENL-DSVLKKLE-EIDY 59 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEEC-SCH-HHHHHHHH-TTTC
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEE-CCH-HHHHHHHH-HcCC
Confidence 5788 899999999999999999 999999999999999998 344 88999998 8883
No 26
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=99.01 E-value=1.2e-09 Score=72.07 Aligned_cols=62 Identities=21% Similarity=0.423 Sum_probs=54.3
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEE
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEI 67 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEI 67 (202)
.|+| +|+|.+|+.+|+++|.+++||.++.+|+..++++|..+ ..+.+.|.+.|. ++| +.+++
T Consensus 9 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~ 73 (76)
T 1opz_A 9 AMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE-KLG---YHVVI 73 (76)
T ss_dssp EEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHH-HHT---CEEEC
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HCC---Cceec
Confidence 5888 89999999999999999999999999999999999853 357889999998 778 45543
No 27
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=99.01 E-value=5.1e-10 Score=75.65 Aligned_cols=65 Identities=11% Similarity=0.200 Sum_probs=56.5
Q ss_pred CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486 1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILK 69 (202)
Q Consensus 1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVs 69 (202)
++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|. ++| +.+.++.
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~ 72 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIR-ELG---FGATVIE 72 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHH-HHT---SCEEEES
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CceEECC
Confidence 36889 99999999999999999999999999999999999864 357889999999 778 5566554
No 28
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=98.98 E-value=9.8e-10 Score=71.26 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=52.1
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEG 60 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk 60 (202)
.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|. ++|+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~ 66 (71)
T 2ldi_A 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIA-ALGY 66 (71)
T ss_dssp EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHH-TTTC
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCC
Confidence 5888 89999999999999999999999999999999999864 357788999999 7883
No 29
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=98.96 E-value=1.7e-09 Score=81.10 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=55.3
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEE
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEI 67 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEI 67 (202)
.|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+ .++.+.|+++|. ++| +.+++
T Consensus 83 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~ 147 (149)
T 2ew9_A 83 ELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIE-EIG---FHASL 147 (149)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHH-HHT---CEEEC
T ss_pred EEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHH-hCC---CceEe
Confidence 5889 99999999999999999999999999999999999864 357899999999 888 55554
No 30
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.95 E-value=1.9e-09 Score=91.28 Aligned_cols=66 Identities=21% Similarity=0.406 Sum_probs=60.0
Q ss_pred EEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCC
Q 046486 2 VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDE 72 (202)
Q Consensus 2 vLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~k 72 (202)
+|+|.|+|.+|+++|+++|.+++||.+++||+.+++++|.+ .++++.|+++|+ ++| +.++++....
T Consensus 9 ~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~-~~~~~~I~~aI~-~~G---y~a~~~~~~~ 74 (222)
T 1qup_A 9 TYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVES-SVAPSTIINTLR-NCG---KDAIIRGAGK 74 (222)
T ss_dssp EEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEE-SSCHHHHHHHHH-HTT---CCCEEECCSC
T ss_pred EEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEec-cCCHHHHHHHHH-HcC---CccccccCCC
Confidence 57889999999999999999999999999999999999998 689999999999 889 6777776543
No 31
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=98.94 E-value=2.3e-09 Score=72.05 Aligned_cols=64 Identities=16% Similarity=0.346 Sum_probs=56.0
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILK 69 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVs 69 (202)
.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|. ++| +.+.+..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~~~ 72 (80)
T 1jww_A 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD-KLG---YKLKLKG 72 (80)
T ss_dssp EEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHH-HHT---SEEEECC
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CeEEecC
Confidence 5888 89999999999999999999999999999999999764 357889999998 788 6666654
No 32
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.90 E-value=3.1e-09 Score=80.28 Aligned_cols=66 Identities=15% Similarity=0.337 Sum_probs=58.4
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKPD 71 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp~ 71 (202)
.|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+ .++.+.|+++|. ++| +.+.++++.
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~~ 145 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD-KLG---YKLKLKGEQ 145 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---CCEEESCSS
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HcC---CCeEEcCcc
Confidence 6889 89999999999999999999999999999999999864 468999999999 889 677766543
No 33
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=98.88 E-value=8.3e-09 Score=73.53 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=57.4
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKPD 71 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp~ 71 (202)
+|.| +|+|.+|+.+|+++|.+++||.++.+|+..++++|..+ .++.+.|.++|. .+| +.+.++...
T Consensus 19 ~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~~ 87 (95)
T 2kkh_A 19 YFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALN-EAR---LEANVRVNG 87 (95)
T ss_dssp EEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---CCEEESCCC
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HcC---CceEEecCC
Confidence 5888 89999999999999999999999999999999999864 257889999998 788 667666544
No 34
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=98.85 E-value=1.1e-08 Score=76.10 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=52.7
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEG 60 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk 60 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+ .++.+.|.++|. ++|+
T Consensus 11 ~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~-~~Gy 71 (111)
T 2ofg_X 11 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIA-ALGY 71 (111)
T ss_dssp EEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHH-TTTC
T ss_pred EEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHH-HcCC
Confidence 5889 89999999999999999999999999999999999874 357889999999 8883
No 35
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.84 E-value=5.4e-09 Score=90.16 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=58.7
Q ss_pred EEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCC
Q 046486 2 VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPD 71 (202)
Q Consensus 2 vLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~ 71 (202)
+|+|.|+|.+|+++|+++|.+++||.+++||+.+++++|.+ .++++.|+++|+ ++| +.++++...
T Consensus 10 ~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~-~~~~~~I~~aIe-~~G---y~a~~~~~~ 74 (249)
T 1jk9_B 10 TYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVES-SVAPSTIINTLR-NCG---KDAIIRGAG 74 (249)
T ss_dssp EEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEE-SSCHHHHHHHHH-TTT---CCCEEEEES
T ss_pred EEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEec-CCCHHHHHHHHH-HhC---CCcccccCC
Confidence 57788999999999999999999999999999999999998 689999999999 889 666666544
No 36
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.79 E-value=1.4e-08 Score=81.67 Aligned_cols=65 Identities=17% Similarity=0.364 Sum_probs=56.6
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKP 70 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp 70 (202)
.|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+ .++.+.|+++|. ++| +.+.++..
T Consensus 125 ~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~ 192 (202)
T 2rop_A 125 LIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIE-DMG---FEASVVSE 192 (202)
T ss_dssp EEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---SCEEEC--
T ss_pred EEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HcC---CceEEcCC
Confidence 5889 89999999999999999999999999999999999864 367899999999 789 66777654
No 37
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=98.72 E-value=2.9e-08 Score=66.06 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=44.9
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+ ..+ .+.|. ++|
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~-~~~----~~~i~-~~G 58 (71)
T 2aj0_A 6 VYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTG-EAS----IQQVE-QAG 58 (71)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEE-SCC----HHHHH-HHH
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEe-cCc----HHHHH-HhC
Confidence 5888 8999999999999999999999999999999999998 444 34555 555
No 38
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=98.71 E-value=4.9e-08 Score=73.09 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=55.8
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILK 69 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVs 69 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|. ++| +.+.++.
T Consensus 7 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~~~ 73 (149)
T 2ew9_A 7 FLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQ-DLG---FEAAVME 73 (149)
T ss_dssp EEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---CEEEECS
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHh-cCC---CceEeec
Confidence 6889 99999999999999999999999999999999999763 367889999999 778 5666543
No 39
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.44 E-value=3.4e-07 Score=73.51 Aligned_cols=56 Identities=14% Similarity=0.304 Sum_probs=50.8
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhc
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKG 58 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~Kt 58 (202)
+|+| +|+|.+|+.+|+++|.+++||.++.|++.+++++|..+ .++.+.|.++|. ++
T Consensus 23 ~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~ 81 (202)
T 2rop_A 23 QLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIE-AL 81 (202)
T ss_dssp EEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHT-TS
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5888 89999999999999999999999999999999999864 367889999998 65
No 40
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.28 E-value=2.6e-06 Score=64.06 Aligned_cols=58 Identities=21% Similarity=0.413 Sum_probs=51.1
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEG 60 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk 60 (202)
.|.| +|+|.+|+.+|+++|.+++||.++.+++.+++++|..+ ..+.+.|.+.|. ++|+
T Consensus 9 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~ 69 (151)
T 1p6t_A 9 AMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE-KLGY 69 (151)
T ss_dssp EEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHH-HHTC
T ss_pred EEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHH-HcCC
Confidence 4788 89999999999999999999999999999999999753 357888999898 6774
No 41
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=98.16 E-value=4.1e-06 Score=80.90 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=53.1
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG 59 (202)
+|+| +|+|.+|+.+|+++|.+++||.+++||+.+++++|..+ ..+.++|.++|+ +.|
T Consensus 5 ~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~-~~G 64 (723)
T 3j09_A 5 TVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIE-DLG 64 (723)
T ss_dssp EEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHC
T ss_pred EEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHH-hcC
Confidence 6888 89999999999999999999999999999999999864 478999999999 788
No 42
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=95.38 E-value=0.031 Score=42.43 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCceEEEE-----EcCCC--EEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCC
Q 046486 14 KKVKKVLCKFPQIQEQSF-----DEKTN--TVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEK 73 (202)
Q Consensus 14 kKIkKaL~ki~GV~~VeV-----Dlk~~--tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kp 73 (202)
-.+.++|.+++||..|.+ |.++. +|||.|++++.+.|.++|+ +.|..|.++.-|..++.
T Consensus 21 vd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE-~~Gg~IHSIDEVvaG~~ 86 (96)
T 2x3d_A 21 VDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLE-EEGCAIHSIDEVVSGNR 86 (96)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHH-HTTCEEEEEEEEEEESS
T ss_pred HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeeeeeeeccc
Confidence 357789999999887644 44433 4466787899999999999 88889999996655543
No 43
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=95.27 E-value=0.039 Score=42.15 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCCceEEEE-----EcCCC--EEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCC
Q 046486 14 KKVKKVLCKFPQIQEQSF-----DEKTN--TVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPD 71 (202)
Q Consensus 14 kKIkKaL~ki~GV~~VeV-----Dlk~~--tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~ 71 (202)
-.+.++|.+++||..|.+ |.++. +|||.|+++|.+.|.++|+ +.|..|.++.-|-.+
T Consensus 22 vdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE-~~GgvIHSIDEVvaG 85 (100)
T 3bpd_A 22 IVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIE-DMGGVIHSVDEVVAG 85 (100)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHH-TTTCEEEEEEEEEEE
T ss_pred HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeeeeeeec
Confidence 356789999999887644 44433 4466787899999999999 888899999855433
No 44
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=95.15 E-value=0.03 Score=42.56 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCceEEE-----EEcCCC--EEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCC
Q 046486 15 KVKKVLCKFPQIQEQS-----FDEKTN--TVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEK 73 (202)
Q Consensus 15 KIkKaL~ki~GV~~Ve-----VDlk~~--tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kp 73 (202)
.+.++|.+++||..|. +|.++. +|||.|+++|.+.|.++|+ +.|..|.++.-|-.++.
T Consensus 23 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE-~~Gg~IHSIDEVvaG~~ 87 (97)
T 2raq_A 23 EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIE-SYGGSIHSVDEVVAGRT 87 (97)
T ss_dssp HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHH-HTTCEEEEEEEEEEESS
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeeeeeeecce
Confidence 5678899999988654 444444 4466787899999999999 88889999996655543
No 45
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=88.84 E-value=2.4 Score=31.29 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC--CceeeEEEcCC
Q 046486 13 RKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE--GVIKTIEILKP 70 (202)
Q Consensus 13 akKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG--k~iK~aEIVsp 70 (202)
...|.++|.+|+||+-..+|.++++++|+-..-+.+.|.+.|. +.. .-+.++.++--
T Consensus 19 ~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~-~I~~i~GVlst~lvy~ 77 (95)
T 2jsx_A 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIE-SVRNVEGVLAVSLVYH 77 (95)
T ss_dssp HHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHH-HHTTSTTEEEEEESSC
T ss_pred HHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHH-HHhcCCCccEEeEEEE
Confidence 6789999999999955456776777777643456666655554 322 33788888864
No 46
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=79.78 E-value=5.4 Score=29.40 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHH
Q 046486 15 KVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLC 55 (202)
Q Consensus 15 KIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~ 55 (202)
+.-+.|.+..|+++++++.++++|+|.+ .+.+.+.+++.
T Consensus 35 k~Ik~I~e~tGv~~IdI~eddG~V~I~g--~~~ea~~~A~~ 73 (91)
T 2cpq_A 35 SNIQQARKVPGVTAIELDEDTGTFRIYG--ESADAVKKARG 73 (91)
T ss_dssp HHHHHHHTSTTEEEEEEETTTTEEEEEE--SSHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEEcCCCEEEEEE--CCHHHHHHHHH
Confidence 3455666778998899998789999998 57888877766
No 47
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=72.94 E-value=3.9 Score=29.77 Aligned_cols=32 Identities=19% Similarity=0.552 Sum_probs=24.8
Q ss_pred EEEcccChhh------HHHHHHHHhcCCCceEEEEEcC
Q 046486 3 LKVDLSCSKC------RKKVKKVLCKFPQIQEQSFDEK 34 (202)
Q Consensus 3 LKV~M~C~gC------akKIkKaL~ki~GV~~VeVDlk 34 (202)
|.+.|+..+| ...|+.+|.+++||.+|+|++.
T Consensus 45 v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 45 VRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT 82 (103)
T ss_dssp EEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEe
Confidence 4556666666 4679999999999999988854
No 48
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=70.87 E-value=3.6 Score=30.38 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=25.6
Q ss_pred EEEEcccChhh------HHHHHHHH-hcCCCceEEEEEcC
Q 046486 2 VLKVDLSCSKC------RKKVKKVL-CKFPQIQEQSFDEK 34 (202)
Q Consensus 2 vLKV~M~C~gC------akKIkKaL-~ki~GV~~VeVDlk 34 (202)
.|.+.|+-.+| ...|+.+| .+++||.+|+|++.
T Consensus 47 ~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~ 86 (108)
T 3lno_A 47 VITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86 (108)
T ss_dssp EEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 34556666666 67899999 99999999888764
No 49
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=67.98 E-value=23 Score=24.62 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=35.0
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCc
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGV 61 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~ 61 (202)
+|.+ ++.|..=.-+++++|.+++ ....+.|..+ ....+.|...++ +.|..
T Consensus 12 ~lD~rGl~CP~Pvl~~kkal~~l~---------~G~~l~V~~dd~~a~~di~~~~~-~~G~~ 63 (82)
T 3lvj_C 12 TLDALGLRCPEPVMMVRKTVRNMQ---------PGETLLIIADDPATTRDIPGFCT-FMEHE 63 (82)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTSC---------TTCEEEEEECCTTHHHHHHHHHH-HTTCE
T ss_pred EEECCCCCCCHHHHHHHHHHHhCC---------CCCEEEEEECCccHHHHHHHHHH-HCCCE
Confidence 3555 7999999999999999985 2345556553 344566777777 77833
No 50
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=67.54 E-value=5.7 Score=28.76 Aligned_cols=32 Identities=6% Similarity=0.239 Sum_probs=23.8
Q ss_pred EEEcccChhh------HHHHHHHHhcCCCceEEEEEcC
Q 046486 3 LKVDLSCSKC------RKKVKKVLCKFPQIQEQSFDEK 34 (202)
Q Consensus 3 LKV~M~C~gC------akKIkKaL~ki~GV~~VeVDlk 34 (202)
|.+.|+..+| ...|+.+|.+++||.+|+|++.
T Consensus 46 v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 46 VLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp EEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 4445565555 3578999999999999988853
No 51
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.83 E-value=30 Score=26.32 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=43.0
Q ss_pred CEEEE-cccCh-hhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCC-HHHHHHHHH
Q 046486 1 MVLKV-DLSCS-KCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCS-PEEIRDKLC 55 (202)
Q Consensus 1 mvLKV-~M~C~-gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vd-pekL~~kL~ 55 (202)
++|.| ++.-. -....|+.+++++..|..|++.....+..|+. -+ +..-.++|+
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf--~~~~~~A~~av~ 74 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILF--KEKAKEALGKAK 74 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEE--SSCHHHHHHHHH
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEE--CCChHHHHHHHH
Confidence 46788 67766 77999999999999999999999988999987 34 566666666
No 52
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=65.30 E-value=25 Score=25.62 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=36.9
Q ss_pred EEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceee
Q 046486 3 LKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKT 64 (202)
Q Consensus 3 LKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~ 64 (202)
|.+ ++.|..=.-+++++|.+++ ..+.+.|..+ ....+.|.+.++ +.|..+..
T Consensus 29 LD~rGl~CP~Pvl~tkkaL~~l~---------~Ge~L~Vl~dd~~a~~dI~~~~~-~~G~~v~~ 82 (98)
T 1jdq_A 29 LDVRGEVCPVPDVETKRALQNMK---------PGEILEVWIDYPMSKERIPETVK-KLGHEVLE 82 (98)
T ss_dssp EECSSCCSSHHHHHHHHHHHTCC---------TTCEEEEEESSCTHHHHHHHHHH-HSSCCEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHhCC---------CCCEEEEEECCccHHHHHHHHHH-HCCCEEEE
Confidence 556 8999999999999999985 2445666654 334577777777 77844433
No 53
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=55.54 E-value=32 Score=26.20 Aligned_cols=46 Identities=9% Similarity=0.123 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCceEEEEEcC-CCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 13 RKKVKKVLCKFPQIQEQSFDEK-TNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 13 akKIkKaL~ki~GV~~VeVDlk-~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
.+.|-++|.++.|+ ++.+|.. +++||+...+++.+++++.|..-.|
T Consensus 43 i~~vl~~la~~tg~-NiV~d~~V~G~VTl~l~~v~~~~al~~iL~~~g 89 (128)
T 4ar0_A 43 IRTILQILAKESGM-NIVASDSVNGKMTLSLKDVPWDQALDLVMQARN 89 (128)
T ss_dssp HHHHHHHHHHTTCC-EEEECTTCCCEEEEEEEEEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC-cEEEcCCCCceeeEeecCCCHHHHHHHHHHHcC
Confidence 46778899999998 6777766 9999998667889999888875666
No 54
>3pro_C Alpha-lytic protease; Pro region, foldase, protein folding, serine protease, hydro hydrolase inhibitor complex; HET: AES; 1.80A {Lysobacter enzymogenes} SCOP: d.52.1.1 d.52.1.1 PDB: 2pro_A* 4pro_C
Probab=55.29 E-value=29 Score=28.06 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=29.5
Q ss_pred CCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEc
Q 046486 23 FPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEIL 68 (202)
Q Consensus 23 i~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIV 68 (202)
-.||..+-||..+|+|+|+.+.-..... ++|..++|-.--.++|+
T Consensus 113 ~~~v~~W~VD~~tN~VVV~a~~~~~~aa-~~f~~~AG~~~~av~V~ 157 (166)
T 3pro_C 113 LDGVQSWYVDPRSNAVVVKVDDGATDAG-VDFVALSGADSAQVRIE 157 (166)
T ss_dssp CTTEEEEEEEGGGTEEEEEEETTCHHHH-HHHHHHHTCCTTTEEEE
T ss_pred CCCCceEEEeCCCCeEEEEeCCCChHHH-HHHHHHhCCCCCceEEE
Confidence 3468899999999999999853344444 44544666222345655
No 55
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=48.80 E-value=35 Score=24.19 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=35.5
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCce
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVI 62 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~i 62 (202)
+|.+ ++.|..=.-+++++|.+++. ..+++.|..+ ....+.|...++ +.|..+
T Consensus 3 ~lD~rGl~CP~Pvl~~kkal~~l~~--------~G~~L~V~~dd~~a~~dI~~~~~-~~G~~v 56 (87)
T 3hz7_A 3 TIDALGQVCPIPVIRAKKALAELGE--------AGGVVTVLVDNDISRQNLQKMAE-GMGYQS 56 (87)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTTGG--------GCCEEEEEESSHHHHHHHHHHHH-HHTCEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHhccC--------CCCEEEEEECCccHHHHHHHHHH-HCCCEE
Confidence 3666 89999999999999999830 1245555553 234567777777 778333
No 56
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=45.69 E-value=17 Score=29.89 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=38.4
Q ss_pred EEEEccc-ChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486 2 VLKVDLS-CSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKP 70 (202)
Q Consensus 2 vLKV~M~-C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp 70 (202)
+|-|.|. |..|+..|..+|.+.+||..|.+-...-- .++-+...-++.|+ ++| ..++++..
T Consensus 86 TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~----~~~p~~~~g~~~L~-~aG---I~V~~~~~ 147 (190)
T 2nyt_A 86 TWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFM----WEEPEIQAALKKLK-EAG---CKLRIMKP 147 (190)
T ss_pred EEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCC----cCChHHHHHHHHHH-HCC---CEEEEecH
Confidence 3455444 99999999999999999988776321000 00011235566777 778 56666543
No 57
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=37.80 E-value=71 Score=21.25 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=41.0
Q ss_pred EEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 3 LKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 3 LKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
|-| ||.=.--...|++.+.++ +|.++.++...+..-|+- .+.+....+|+..-|
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f--~~~~~a~~Ai~~l~g 62 (88)
T 1wg1_A 8 ILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTL--LNGEQAQNAIQMFHQ 62 (88)
T ss_dssp EEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECC--SCHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEE--CCHHHHHHHHHHhCC
Confidence 445 565555678899999999 999999997778888886 577777777774434
No 58
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=36.63 E-value=36 Score=24.81 Aligned_cols=52 Identities=10% Similarity=0.018 Sum_probs=34.8
Q ss_pred EEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceee
Q 046486 3 LKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKT 64 (202)
Q Consensus 3 LKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~ 64 (202)
|.+ ++.|..=.-+++++|.+++ ..+.+.|..+ ....+.|.+.++ +.|..+..
T Consensus 30 LD~rGl~CP~PvlktkkaL~~l~---------~Ge~L~Vl~dd~~a~~dIp~~~~-~~G~~v~~ 83 (97)
T 1je3_A 30 LDMVGEPCPYPAVATLEAMPQLK---------KGEILEVVSDCPQSINNIPLDAR-NHGYTVLD 83 (97)
T ss_dssp ECSBCCSSSSSTHHHHHHTTTCC---------SSCEEEEEEBCSSSSCHHHHHHH-HHTCSEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHcCC---------CCCEEEEEECCcchHHHHHHHHH-HCCCEEEE
Confidence 444 7889999999999999885 2344555543 344567777777 77844433
No 59
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=36.56 E-value=57 Score=25.08 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=27.5
Q ss_pred HHHHHHHHh----cC-CCceEEEEEcCCCEEEEEeecCCHHHHHHHHH
Q 046486 13 RKKVKKVLC----KF-PQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLC 55 (202)
Q Consensus 13 akKIkKaL~----ki-~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~ 55 (202)
+..+.+.|. .+ ..-.++.+|..+|.++|++.....+.|.+.|.
T Consensus 117 a~~~~~~l~~~~~~l~~~~g~v~~d~~tN~liv~~~~~~i~~i~~li~ 164 (175)
T 2y3m_A 117 ASEVMKSLTGGSGSLLSPNGSITFDDRSNLLLIQDEPRSVRNIKKLIK 164 (175)
T ss_dssp HHHHHHHHHCSSSCSSCTTCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcccccCCCceEEEECCCCEEEEEcCHHHHHHHHHHHH
Confidence 456667776 33 33348999999999999983222334444444
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=36.22 E-value=75 Score=23.10 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCceEEEEEcCCCEEEEEee
Q 046486 15 KVKKVLCKFPQIQEQSFDEKTNTVTIKVV 43 (202)
Q Consensus 15 KIkKaL~ki~GV~~VeVDlk~~tVtV~G~ 43 (202)
.|++...+..+| .+.|.-.++.|+|+|.
T Consensus 48 ~Ik~i~~~~~~v-~I~fp~~~~~ItI~G~ 75 (102)
T 2ctf_A 48 NLAKITQQMPKV-HIEFTEGEDKITLEGP 75 (102)
T ss_dssp HHHHHHHHCSSS-EEEECSSSCEEEEEEC
T ss_pred cHHHHHHHcCCc-EEEeCCCCCEEEEECC
Confidence 456666666675 5666666899999993
No 61
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=35.60 E-value=1.1e+02 Score=22.43 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHH
Q 046486 15 KVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLC 55 (202)
Q Consensus 15 KIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~ 55 (202)
-+-++|-+|+||++|-+. .+-|||+=. .++++.|...|.
T Consensus 40 PLA~~LF~i~gVk~Vf~g--~dFITVtK~~~~dW~~ikp~I~ 79 (94)
T 2k1h_A 40 EFINRLFEIEGVKSIFYV--LDFISIDKEDNANWNELLPQIE 79 (94)
T ss_dssp HHHHHHHTSTTEEEEEEE--TTEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHhhCCCCeeEEEEe--CCEEEEecCCCCCHHHHHHHHH
Confidence 356778899999999887 678888632 688999887776
No 62
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=33.85 E-value=25 Score=31.56 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCce--EEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486 13 RKKVKKVLCKFPQIQ--EQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILK 69 (202)
Q Consensus 13 akKIkKaL~ki~GV~--~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVs 69 (202)
..+|.+++.+.+||. ++..|...|+..++-+ -+++.|.+++-..+. +.+++|+
T Consensus 19 Ie~I~~a~~~~~gv~LLd~~~D~~~NRsv~T~v-g~pe~v~eaa~~~~~---~A~elID 73 (325)
T 1qd1_A 19 IDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFV-GRPEDVVEGALNAAR---AAYQLID 73 (325)
T ss_dssp HHHHHHHHHTSTTCEEEEEEEETTTTEEEEEEE-ECHHHHHHHHHHHHH---HHHHHCC
T ss_pred HHHHHHHHhcCCCcEEEeCCCCCCCCCceEEEc-cChHHHHHHHHHHHH---HHHHhcc
Confidence 468899999999965 6777888998877642 368888877764444 4444444
No 63
>1ju8_A Leginsulin, albumin 1; T-knot, hormone/growth factor complex; NMR {Synthetic} SCOP: g.3.6.4
Probab=32.61 E-value=15 Score=23.16 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=18.6
Q ss_pred cccCccCCCCCCcccccccCCCCc
Q 046486 165 YCRGRCSDFTYGRCSYCTCGRCSD 188 (202)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~r~~~ 188 (202)
.|.|-||-|..--|.+ .-|||-.
T Consensus 2 ~C~gvCSPFemPPC~s-~~CRCiP 24 (37)
T 1ju8_A 2 DCNGACSPFEVPPCRS-RDCRCVP 24 (37)
T ss_dssp CSCSEECSSSSSSSSC-TTSEEEE
T ss_pred ccccccCCcccCCCCC-CCeeEEE
Confidence 3889999999999974 7788843
No 64
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=31.98 E-value=31 Score=23.47 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=33.4
Q ss_pred EEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcC
Q 046486 3 LKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGE 59 (202)
Q Consensus 3 LKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtG 59 (202)
|.+ ++.|..=.-+++++|.+++ ..+.+.|..+ ......|.+.++ +.|
T Consensus 9 lD~rGl~CP~Pvl~~k~al~~l~---------~G~~L~V~~dd~~a~~di~~~~~-~~G 57 (78)
T 1pav_A 9 IDARGSYCPGPLMELIKAYKQAK---------VGEVISVYSTDAGTKKDAPAWIQ-KSG 57 (78)
T ss_dssp CCBSSCSSCTTHHHHHHHHTTSC---------TTCCEECCBSSSCHHHHHHHHHH-HHT
T ss_pred EECCCCCCCHHHHHHHHHHHcCC---------CCCEEEEEECCccHHHHHHHHHH-HCC
Confidence 445 7889999999999999885 2344566553 234567877777 777
No 65
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=29.15 E-value=41 Score=27.07 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=29.0
Q ss_pred cCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHH
Q 046486 22 KFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLC 55 (202)
Q Consensus 22 ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~ 55 (202)
.|+||+.+.+|+.+.+|+=.-|-+|-+.+.+.|.
T Consensus 119 aiPGVTtlklDm~~~Rv~eh~DlmDyqTm~DQl~ 152 (154)
T 3gzb_A 119 AIPAVTSLKLDMLNRRVTEHVDLIDYQTMSDQLA 152 (154)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEECHHHHHHHHT
T ss_pred ecCceEEEeecCCccchhhhHhHHhHHHHHHHhh
Confidence 5799999999999999998776678888887764
No 66
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=28.57 E-value=72 Score=31.67 Aligned_cols=45 Identities=7% Similarity=0.139 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCEEEEEee-------cCCHHHHHHHHHhh
Q 046486 13 RKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-------SCSPEEIRDKLCCK 57 (202)
Q Consensus 13 akKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-------~vdpekL~~kL~~K 57 (202)
.+.|++.|.+++||.+|.++-.+.++.|.-| .++.++|.++|+..
T Consensus 159 ~~~i~~~L~~i~gv~~v~~~g~~~~i~i~id~~kl~~~Gls~~~v~~~l~~~ 210 (1052)
T 2v50_A 159 VSNIQDPLSRTKGVGDFQVFGSQYSMRIWLDPAKLNSYQLTPGDVSSAIQAQ 210 (1052)
T ss_dssp HHHTHHHHHTSTTEEEEEESSCCEEEEEEECHHHHTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEEecCCcEEEEEEeCHHHHHHcCCCHHHHHHHHHhc
Confidence 3579999999999999999865666677643 37788899999844
No 67
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.31 E-value=1.2e+02 Score=19.53 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=42.3
Q ss_pred EEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHH
Q 046486 3 LKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLC 55 (202)
Q Consensus 3 LKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~ 55 (202)
|-| +|.=.--...|++.++++-.|.++.+-...+..-|+- .+.+....+|.
T Consensus 15 l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f--~~~~~A~~a~~ 66 (85)
T 2ytc_A 15 LYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQF--ATRQAAEVAAE 66 (85)
T ss_dssp EEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEE--SSHHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEE--CCHHHHHHHHH
Confidence 456 6776677889999999999999999998888888887 57788888887
No 68
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=27.43 E-value=77 Score=20.78 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=10.1
Q ss_pred CHHHHHHHHHhhcCCceeeEEEc
Q 046486 46 SPEEIRDKLCCKGEGVIKTIEIL 68 (202)
Q Consensus 46 dpekL~~kL~~KtGk~iK~aEIV 68 (202)
..+.|+++|++..| +.++..+
T Consensus 58 ~l~~l~~~L~~~~~--V~~v~~~ 78 (88)
T 2ko1_A 58 KLTTLMDKLRKVQG--VFTVERL 78 (88)
T ss_dssp HHHHHHHHHTTCTT--EEEEEEE
T ss_pred HHHHHHHHHhcCCC--ceEEEEe
Confidence 34556666653322 4445444
No 69
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=27.28 E-value=79 Score=31.32 Aligned_cols=44 Identities=7% Similarity=0.156 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCEEEEEee-------cCCHHHHHHHHHhh
Q 046486 14 KKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-------SCSPEEIRDKLCCK 57 (202)
Q Consensus 14 kKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-------~vdpekL~~kL~~K 57 (202)
+.|++.|.+++||.+|++......+.|+-| .++.++|.++|+..
T Consensus 160 ~~i~~~l~~i~gv~~v~~~g~~~~i~i~~d~~~l~~~glt~~~v~~~l~~~ 210 (1057)
T 4dx5_A 160 ANMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQ 210 (1057)
T ss_dssp HHTHHHHHTSTTEEEEEESSCCEEEEEEECHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCceEEEecCCcEEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 689999999999999999766455666543 37788899999843
No 70
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.41 E-value=1.6e+02 Score=20.20 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=44.0
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
+|-| +|.=.--...|++.+..+-.|.++.+....+-.-|+. .+.+....+|...-|
T Consensus 27 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f--~~~~~a~~A~~~l~g 83 (109)
T 1x4g_A 27 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRF--STHESAAHAIVSVNG 83 (109)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEE--SSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEE--CCHHHHHHHHHHcCC
Confidence 4556 6766667788999999999999999998888899987 577777777763334
No 71
>1p8b_A PEA albumin 1, subunit B; inhibitor cystine-knot, plant protein; NMR {Pisum sativum} SCOP: g.3.6.4
Probab=26.06 E-value=16 Score=23.08 Aligned_cols=24 Identities=33% Similarity=0.769 Sum_probs=18.9
Q ss_pred cccCccCCCCCCcccccccCCCCcc
Q 046486 165 YCRGRCSDFTYGRCSYCTCGRCSDC 189 (202)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (202)
.|.|-||-|..--|.+ .-|||-.+
T Consensus 2 ~C~gvCSPFemPPC~s-~~CRCIP~ 25 (37)
T 1p8b_A 2 SCNGVCSPFEMPPCGT-SACRCIPV 25 (37)
T ss_dssp CCEEEECTTCSSGGGC-SSSEEECC
T ss_pred cccccccCcccCCCCC-CCeeEEEE
Confidence 3889999999999974 77888443
No 72
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=25.62 E-value=36 Score=23.29 Aligned_cols=34 Identities=15% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486 35 TNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILK 69 (202)
Q Consensus 35 ~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVs 69 (202)
+++|-|.+- .++.++|.+.+. +.|..|.+|.|+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~ 36 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMR 36 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEe
Confidence 366777764 578888988888 7675666776653
No 73
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=25.56 E-value=21 Score=27.16 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=19.7
Q ss_pred HHHhcCCCceEEEEEcCCCEEEEEeecCCHH
Q 046486 18 KVLCKFPQIQEQSFDEKTNTVTIKVVSCSPE 48 (202)
Q Consensus 18 KaL~ki~GV~~VeVDlk~~tVtV~G~~vdpe 48 (202)
.+|..+..+..++|+.+.+.||++| .++..
T Consensus 68 ~aL~~~~~l~~i~V~V~~g~VtLsG-~v~s~ 97 (132)
T 2kgs_A 68 PVFTASVPIPDFGLKVERDTVTLTG-TAPSS 97 (132)
T ss_dssp HHHHHHTTCTTCEEEEEETEEEEEC-EESSH
T ss_pred HHHHhcCcCCceEEEEECCEEEEEE-EECCH
Confidence 3444433344667888899999999 44433
No 74
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=25.13 E-value=1.1e+02 Score=27.22 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=30.2
Q ss_pred hHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 12 CRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 12 CakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
-.+.|+++|..+.+ +.|....+++.|..+..+.+.+.++|.+-.|
T Consensus 37 L~~ni~~~l~~~~~---~~v~~~~gri~v~~~~~~~~~~~~~L~~vfG 81 (413)
T 2c5s_A 37 LKDNVKFKLKKFPN---IKIDATHDRMYIQLNGEDHEAVSERLKDVFG 81 (413)
T ss_dssp HHHHHHHHTTTSTT---CEEEECSSCEEEECTTCCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhhcCc---eEEEEECCEEEEEeCCCCHHHHHHHHhhCCC
Confidence 35677778777643 4466667888887533367778888875555
No 75
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=24.80 E-value=83 Score=19.53 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=19.2
Q ss_pred CEEEE--cccChhhHHHHHHHHhcCCCceEEEEEc
Q 046486 1 MVLKV--DLSCSKCRKKVKKVLCKFPQIQEQSFDE 33 (202)
Q Consensus 1 mvLKV--~M~C~gCakKIkKaL~ki~GV~~VeVDl 33 (202)
|.+.+ .-.|..|.+ ++..|.++ ||.-..+|.
T Consensus 1 m~i~~y~~~~C~~C~~-~~~~l~~~-~i~~~~~di 33 (75)
T 1r7h_A 1 MSITLYTKPACVQCTA-TKKALDRA-GLAYNTVDI 33 (75)
T ss_dssp CCEEEEECTTCHHHHH-HHHHHHHT-TCCCEEEET
T ss_pred CeEEEEeCCCChHHHH-HHHHHHHc-CCCcEEEEC
Confidence 44555 457999975 66677765 565444554
No 76
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.56 E-value=79 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=21.1
Q ss_pred cccChhhHH-----HHHHHHhcCCCceEEEEEcC
Q 046486 6 DLSCSKCRK-----KVKKVLCKFPQIQEQSFDEK 34 (202)
Q Consensus 6 ~M~C~gCak-----KIkKaL~ki~GV~~VeVDlk 34 (202)
--.|..|.. ++++.|... ||.-.++|+.
T Consensus 15 ~~~C~~C~~~~~~~~ak~~L~~~-gi~y~~vdI~ 47 (111)
T 2ct6_A 15 ASSSGFVAIKKKQQDVVRFLEAN-KIEFEEVDIT 47 (111)
T ss_dssp CSSCSCHHHHHHHHHHHHHHHHT-TCCEEEEETT
T ss_pred cCCCCCcccchhHHHHHHHHHHc-CCCEEEEECC
Confidence 567999997 899999875 6765556653
No 77
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.54 E-value=1.6e+02 Score=19.69 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=40.4
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHH
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLC 55 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~ 55 (202)
+|-| +|.=.--...|++.++++-.|.++.+....+..-|+- .+.+....+|+
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f--~~~~~a~~a~~ 69 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRL--ETRTLAEIAKV 69 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEEC--SSSHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEE--CCHHHHHHHHH
Confidence 3556 6666666788999999999999999998889999987 45566666665
No 78
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=23.66 E-value=1.2e+02 Score=20.59 Aligned_cols=47 Identities=15% Similarity=0.030 Sum_probs=32.3
Q ss_pred CCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486 23 FPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKTIEILK 69 (202)
Q Consensus 23 i~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~aEIVs 69 (202)
+.|+.-....+..++++|... +.+..+|.++|..++|-......++-
T Consensus 7 ~~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 7 LQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp ---CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ccceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 567777778888888888754 56789999999988874434444443
No 79
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=23.64 E-value=55 Score=22.62 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.3
Q ss_pred cCCCce--EEEEEcCCCEEEEEee
Q 046486 22 KFPQIQ--EQSFDEKTNTVTIKVV 43 (202)
Q Consensus 22 ki~GV~--~VeVDlk~~tVtV~G~ 43 (202)
.++|+. +++|.++++.++|.|.
T Consensus 14 dlPG~~~edi~V~v~~~~L~I~g~ 37 (85)
T 3q9p_A 14 DVNHFAPDELTVKTKDGVVEITGK 37 (85)
T ss_dssp ECTTTCCSEEEEEEETTEEEEEEE
T ss_pred ECCCCChHHEEEEEECCEEEEEEE
Confidence 467875 7899999999999994
No 80
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=23.18 E-value=92 Score=22.48 Aligned_cols=45 Identities=7% Similarity=0.014 Sum_probs=30.1
Q ss_pred HHHHHHhc---CCCceEEEEEcCCCEEEEEee-----------cCCHHHHHHHHHhhcC
Q 046486 15 KVKKVLCK---FPQIQEQSFDEKTNTVTIKVV-----------SCSPEEIRDKLCCKGE 59 (202)
Q Consensus 15 KIkKaL~k---i~GV~~VeVDlk~~tVtV~G~-----------~vdpekL~~kL~~KtG 59 (202)
+|++.|.+ -.||..|++.-..+.+.|+-- ..+-++|.+.|++.++
T Consensus 11 ~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~ 69 (92)
T 1wh9_A 11 ELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFG 69 (92)
T ss_dssp HHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhC
Confidence 44444433 269999999999888877411 1235677788887775
No 81
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=22.64 E-value=2e+02 Score=20.12 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=40.2
Q ss_pred EEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 3 LKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 3 LKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
|-| ||.=.--...|+..+.++-.|.++.+-.+ +..-|+. .+.+...++|+..-|
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f--~~~~~a~~Ai~~l~g 73 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEF--VRKEDMTYAVRKLDN 73 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEE--SSHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEE--CCHHHHHHHHHHhCC
Confidence 445 66655567789999999988999988665 7788886 577888888874444
No 82
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.28 E-value=1.9e+02 Score=19.69 Aligned_cols=56 Identities=14% Similarity=0.288 Sum_probs=41.0
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCC---EEEEEeecCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTN---TVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~---tVtV~G~~vdpekL~~kL~~KtG 59 (202)
+|-| ||.=.--...|++.+.++-.|.++.+....+ ...|+. .+.+....+|+..-|
T Consensus 24 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f--~~~~~A~~A~~~l~g 83 (109)
T 1x4a_A 24 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEF--EDPRDAEDAVYGRDG 83 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEE--SCHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEE--CCHHHHHHHHHHcCC
Confidence 4556 7776667888999999999999999866543 667776 477777777763434
No 83
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=22.24 E-value=1.1e+02 Score=26.19 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEc
Q 046486 25 QIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEIL 68 (202)
Q Consensus 25 GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIV 68 (202)
|+++|+.+ +.+.++|..+-.+...|.++|+ +.|..+.+++|.
T Consensus 162 GAeDv~~~-edg~~~v~t~p~~~~~V~~aL~-~~g~~~~~aei~ 203 (247)
T 4f3q_A 162 GAEDVTTN-DDGSIDVTTLPEDFEKIRNAMK-AADLNPSHAEVT 203 (247)
T ss_dssp TCSEEEEC-TTSCEEEEECGGGHHHHHHHHH-HTTCCCSEEEEE
T ss_pred CCceeeec-CCceEEEEECHHHHHHHHHHHH-HcCCCeeEEEEE
Confidence 78888865 3446666654567889999999 558777777765
No 84
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=21.46 E-value=3e+02 Score=24.58 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=41.4
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcC------CCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEK------TNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk------~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
+|-| ||.=.--...|+.++.++-.|.+|.|-.. .+-..|+. .+.+....+|...-|
T Consensus 104 ~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F--~~~e~A~~Ai~~lng 166 (437)
T 3pgw_S 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY--EHERDMHSAYKHADG 166 (437)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEee--ccHHHHHHHHHHcCC
Confidence 4666 77777778899999999999999888543 34567776 577888888873344
No 85
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=21.35 E-value=2.1e+02 Score=19.92 Aligned_cols=56 Identities=7% Similarity=0.127 Sum_probs=41.1
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcC------CCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEK------TNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk------~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
+|-| ||.=.--...|+..+.++-.|.++.+-.+ .+..-|+. .+.+....+|...-|
T Consensus 24 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f--~~~~~a~~A~~~l~g 86 (126)
T 3ex7_B 24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY--ETYKEAQAAMEGLNG 86 (126)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEE--SSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEE--CCHHHHHHHHHHhCC
Confidence 4566 77766678899999999999999888655 45677776 577777777763333
No 86
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=21.14 E-value=1.9e+02 Score=19.31 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=43.2
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
+|-| ||.=.--...|++.++++-.|.++.+-...+-.-|+. .+.+....+|...-|
T Consensus 29 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f--~~~~~A~~Ai~~l~g 85 (101)
T 2la4_A 29 TAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKY--DTHEQAAVCIVALAN 85 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEEC--SSHHHHHHHHHHHTT
T ss_pred EEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEE--CCHHHHHHHHHHhCC
Confidence 3556 6766666788999999999999999988888888886 477777777763344
No 87
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.06 E-value=2e+02 Score=19.35 Aligned_cols=53 Identities=8% Similarity=0.038 Sum_probs=41.0
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcC----CCEEEEEeecCCHHHHHHHHHh
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEK----TNTVTIKVVSCSPEEIRDKLCC 56 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk----~~tVtV~G~~vdpekL~~kL~~ 56 (202)
+|-| ||.=.--...|++.+.++-.|.++.+-.+ .+...|+. .+.+....+|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f--~~~~~a~~A~~~ 74 (103)
T 2cq3_A 17 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF--ENSADADRAREK 74 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEE--SCHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEE--CCHHHHHHHHHH
Confidence 4556 77777778889999999999999998776 45677776 577777777763
No 88
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=20.96 E-value=1.1e+02 Score=22.93 Aligned_cols=43 Identities=7% Similarity=-0.022 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCC---CceEEEEEcCCCEEEEEeecCCHHHHHHHHH
Q 046486 13 RKKVKKVLCKFP---QIQEQSFDEKTNTVTIKVVSCSPEEIRDKLC 55 (202)
Q Consensus 13 akKIkKaL~ki~---GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~ 55 (202)
+..+.+.|..+. .--.+.+|..+|++.|+|.....+.|.+.|+
T Consensus 86 a~~l~~~L~~~~ll~~rg~v~~d~~tn~l~v~g~~~~v~~v~~~i~ 131 (137)
T 2y9k_A 86 LNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAAT 131 (137)
T ss_dssp HHHHHHHHCCTTCCCSSSCEEECSSTTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCceEECCCCCEEEEECcHHHHHHHHHHHH
Confidence 567788887653 2346999999999999984233344444433
No 89
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=20.50 E-value=96 Score=22.56 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhh
Q 046486 15 KVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCK 57 (202)
Q Consensus 15 KIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~K 57 (202)
-+-++|-.|+||++|-+. .+-|||+=. .++++.|...|...
T Consensus 40 PLA~~LF~i~gVk~Vf~g--~dFITVtK~~~~dW~~ikp~V~~~ 81 (91)
T 1pqx_A 40 AFINDILKVEGVKSIFHV--MDFISVDKENDANWETVLPKVEAV 81 (91)
T ss_dssp HHHHHHHHSTTEEEEEEE--TTEEEEEECTTSCSTTTHHHHHHH
T ss_pred HHHHHhhCCCCeeEEEEe--CCEEEEecCCCCCHHHHHHHHHHH
Confidence 355677799999999887 678888632 57888887777633
No 90
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.27 E-value=2e+02 Score=19.14 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=41.0
Q ss_pred EEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 3 LKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 3 LKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
|-| +|.=.-=...|++.++++-.|.++.+....+..-|+- .+.+....+|...-|
T Consensus 20 l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f--~~~~~A~~A~~~l~g 75 (97)
T 1why_A 20 LWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQY--ESLDAAQAACAKMRG 75 (97)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEE--SSHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEE--CCHHHHHHHHHHHCC
Confidence 445 5665556788999999999999999887777888886 467777777763333
No 91
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.22 E-value=2.2e+02 Score=19.54 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=43.9
Q ss_pred EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486 2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE 59 (202)
Q Consensus 2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG 59 (202)
.|-| ||.=.--...|+..+.++-.|.++.+-.+ +..-|+. .+.+....+|+..-|
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f--~~~~~a~~Ai~~l~g 72 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEF--VRKEDMTYAVRKLDN 72 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEE--SSHHHHHHHHHHSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEE--CCHHHHHHHHHHHCc
Confidence 4556 67766678899999999999999999776 8888887 588888888884444
Done!