BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046487
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
           Mouse Twinfilin
          Length = 166

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 38  LPLDVPKGHFAVYVGEHRSRYIVPISFL-SHPEFQCLLRQ 76
           +P D  + HF +Y   H   Y+  + F+ S P + C +R+
Sbjct: 76  IPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRE 115


>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
           Domain In Complex With Actin
          Length = 164

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 38  LPLDVPKGHFAVYVGEHRSRYIVPISFL-SHPEFQCLLRQ 76
           +P D  + HF +Y   H   Y+  + F+ S P + C +R+
Sbjct: 71  IPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRE 110


>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
          Length = 142

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 38 LPLDVPKGHFAVYVGEHRSRYIVPISFL-SHPEFQCLLRQ 76
          +P D  + HF +Y   H   Y+  + F+ S P + C +R+
Sbjct: 55 IPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRE 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,085,854
Number of Sequences: 62578
Number of extensions: 121815
Number of successful extensions: 212
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 4
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)