Query 046487
Match_columns 106
No_of_seqs 121 out of 626
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 22:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 60.5 16 0.00056 23.6 4.8 60 44-106 5-69 (107)
2 2vkp_A BTB/POZ domain-containi 50.6 22 0.00074 21.9 4.0 55 47-105 11-70 (109)
3 2vpk_A Myoneurin; transcriptio 47.5 20 0.00068 22.5 3.5 50 47-105 25-79 (116)
4 2xko_C PIPX, global nitrogen r 46.6 2.1 7.1E-05 28.5 -1.5 11 63-73 5-15 (89)
5 2al3_A TUG long isoform; TUG U 45.7 22 0.00077 23.3 3.5 40 45-86 9-48 (90)
6 1vd2_A Protein kinase C, IOTA 44.1 32 0.0011 22.2 4.1 37 45-85 5-43 (89)
7 1und_A Advillin, P92; actin bi 44.0 6.2 0.00021 22.0 0.5 19 63-81 1-19 (37)
8 1r29_A B-cell lymphoma 6 prote 43.1 23 0.00079 22.6 3.3 53 47-105 32-88 (127)
9 3ga1_A Nucleus accumbens-assoc 36.0 41 0.0014 21.5 3.7 50 47-105 36-89 (129)
10 3n5b_B ASR0485 protein; PII, P 34.0 4.4 0.00015 27.9 -1.5 11 63-73 28-38 (112)
11 3drx_A BTB/POZ domain-containi 33.6 25 0.00085 26.1 2.5 60 44-106 11-75 (202)
12 3qli_A Coenzyme A transferase; 33.4 24 0.00083 29.0 2.6 44 39-83 401-454 (455)
13 2if5_A Zinc finger and BTB dom 28.5 75 0.0026 19.8 3.9 54 47-105 28-84 (120)
14 3b84_A Zinc finger and BTB dom 26.4 81 0.0028 19.8 3.8 50 47-105 27-79 (119)
15 2kkc_A Sequestosome-1; P62, PB 26.2 1.4E+02 0.0049 19.6 5.5 50 52-101 19-87 (102)
16 3ezo_A Malonyl COA-acyl carrie 24.6 45 0.0015 25.2 2.6 39 46-84 11-49 (318)
17 3eh7_A 4-hydroxybutyrate COA-t 24.5 39 0.0013 27.4 2.3 44 38-82 380-434 (434)
18 2q81_A MIZ-1 protein; BTB/POZ 23.1 82 0.0028 19.8 3.3 49 47-105 30-81 (119)
19 1zav_U 50S ribosomal protein L 22.7 52 0.0018 17.2 1.9 13 70-82 18-30 (30)
20 1y6i_A Mg-chelatase cofactor G 22.6 5.6 0.00019 30.4 -2.8 30 40-71 200-229 (233)
21 1yu8_X Villin; alpha helix, 3- 22.3 23 0.00079 22.0 0.4 20 63-82 31-50 (67)
22 3m91_B Prokaryotic ubiquitin-l 21.9 28 0.00097 20.2 0.7 19 70-88 23-43 (44)
23 3ohu_A Transcription regulator 21.4 48 0.0016 21.0 1.9 52 47-105 35-90 (125)
24 1z3x_A Putative cytidyltransfe 20.7 3.3 0.00011 31.8 -4.5 29 40-70 208-236 (238)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=60.53 E-value=16 Score=23.59 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=41.9
Q ss_pred CceEEEEEcCcceEEEEeccCC-CcH--HHHHHHHHHHHhcC--CcCCCceEeeCcHHHHHHHHhhhC
Q 046487 44 KGHFAVYVGEHRSRYIVPISFL-SHP--EFQCLLRQAEEEFG--FDHDMGLTIPCEEVVFRSLTSMLR 106 (106)
Q Consensus 44 kG~~aVyVG~~~~RfvVp~~~L-~hP--~F~~LL~~aeeE~G--~~~~G~l~IpC~~~~Fe~vl~~l~ 106 (106)
...+.+.||. .+|.+..+-| ++| .|..+.... .++. .+.+|.+-|-.+...|++||.-++
T Consensus 5 ~~~v~LNVGG--~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr 69 (107)
T 3drz_A 5 SKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLR 69 (107)
T ss_dssp CCEEEEEETT--EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEEECC--EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhC
Confidence 3567889996 5999986655 345 566664321 1232 346788999999999999998663
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=50.64 E-value=22 Score=21.90 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=36.6
Q ss_pred EEEEEcC--cceEEEEeccCC--CcHHHHHHHHHHHHhcCCcCCCceEee-CcHHHHHHHHhhh
Q 046487 47 FAVYVGE--HRSRYIVPISFL--SHPEFQCLLRQAEEEFGFDHDMGLTIP-CEEVVFRSLTSML 105 (106)
Q Consensus 47 ~aVyVG~--~~~RfvVp~~~L--~hP~F~~LL~~aeeE~G~~~~G~l~Ip-C~~~~Fe~vl~~l 105 (106)
+.+.||+ +.++|-+.-..| ..|.|++++...-.|-. ..|.+| .+.+.|+.+|..+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~----~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK----SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C----CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC----CeEEeCCCCHHHHHHHHHHH
Confidence 3455665 347888887777 58999999975443321 578887 6889999998753
No 3
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=47.53 E-value=20 Score=22.54 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=35.9
Q ss_pred EEEEEcCcceEEEEeccCC--CcHHHHHHHHHHHHhcCCcCCCceEee---CcHHHHHHHHhhh
Q 046487 47 FAVYVGEHRSRYIVPISFL--SHPEFQCLLRQAEEEFGFDHDMGLTIP---CEEVVFRSLTSML 105 (106)
Q Consensus 47 ~aVyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeE~G~~~~G~l~Ip---C~~~~Fe~vl~~l 105 (106)
+.+.||+ ++|-+.-..| ..|.|++++... .+..+.|+ .+...|+.+|.-+
T Consensus 25 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE--FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC--EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHH
Confidence 3455664 5787776666 579999988654 24578887 7899999998753
No 4
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=46.61 E-value=2.1 Score=28.51 Aligned_cols=11 Identities=45% Similarity=0.996 Sum_probs=8.5
Q ss_pred cCCCcHHHHHH
Q 046487 63 SFLSHPEFQCL 73 (106)
Q Consensus 63 ~~L~hP~F~~L 73 (106)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999998544
No 5
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=45.72 E-value=22 Score=23.28 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=28.6
Q ss_pred ceEEEEEcCcceEEEEeccCCCcHHHHHHHHHHHHhcCCcCC
Q 046487 45 GHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHD 86 (106)
Q Consensus 45 G~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeE~G~~~~ 86 (106)
|--.+++...-+|+.|++.- .-.+.++|++|-+.|||+.+
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp--~t~L~~VL~eaC~K~gl~~~ 48 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTP--STVLLQVLEDTCRRQDFNPS 48 (90)
T ss_dssp -CCEEEECTTSCEEEECCCT--TSBHHHHHHHHHHHTTCCGG
T ss_pred ccEEEEEcCCCcEEEEEECC--CCCHHHHHHHHHHHhCCChh
Confidence 43445555556899999843 33678999999999999764
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=44.06 E-value=32 Score=22.24 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=27.1
Q ss_pred ceEEEEE--cCcceEEEEeccCCCcHHHHHHHHHHHHhcCCcC
Q 046487 45 GHFAVYV--GEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDH 85 (106)
Q Consensus 45 G~~aVyV--G~~~~RfvVp~~~L~hP~F~~LL~~aeeE~G~~~ 85 (106)
|.+.|-+ ++...|+.||. .+.|.+|.++-.+-|++..
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP----SISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCS
T ss_pred CeEEEEEEeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCC
Confidence 3344433 44567888887 5689999999999999854
No 7
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=43.97 E-value=6.2 Score=21.97 Aligned_cols=19 Identities=21% Similarity=0.530 Sum_probs=16.8
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q 046487 63 SFLSHPEFQCLLRQAEEEF 81 (106)
Q Consensus 63 ~~L~hP~F~~LL~~aeeE~ 81 (106)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999987
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=43.09 E-value=23 Score=22.59 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=38.1
Q ss_pred EEEEEcCcceEEEEeccCC--CcHHHHHHHHHHHHhcCCcCCCceEe-e-CcHHHHHHHHhhh
Q 046487 47 FAVYVGEHRSRYIVPISFL--SHPEFQCLLRQAEEEFGFDHDMGLTI-P-CEEVVFRSLTSML 105 (106)
Q Consensus 47 ~aVyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeE~G~~~~G~l~I-p-C~~~~Fe~vl~~l 105 (106)
+.+.||+ +.|-+.-..| ..|.|++++...-.| ....|.| + .+.+.|+.+|.-+
T Consensus 32 v~l~v~~--~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR--EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC--EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHH
Confidence 3455664 5777776666 689999999765444 3567999 4 6889999988753
No 9
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=35.96 E-value=41 Score=21.51 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=36.6
Q ss_pred EEEEEcCcceEEEEeccCCC--cHHHHHHHHHHHHhcCCcCCCceEee--CcHHHHHHHHhhh
Q 046487 47 FAVYVGEHRSRYIVPISFLS--HPEFQCLLRQAEEEFGFDHDMGLTIP--CEEVVFRSLTSML 105 (106)
Q Consensus 47 ~aVyVG~~~~RfvVp~~~L~--hP~F~~LL~~aeeE~G~~~~G~l~Ip--C~~~~Fe~vl~~l 105 (106)
+.+.||+ ++|-+.-..|. .|.|++++... ....|.|| .+.+.|+.+|..+
T Consensus 36 v~l~v~~--~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG--HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHH
Confidence 4556664 57777755554 69999998765 34579996 8899999998753
No 10
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=34.05 E-value=4.4 Score=27.93 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=8.6
Q ss_pred cCCCcHHHHHH
Q 046487 63 SFLSHPEFQCL 73 (106)
Q Consensus 63 ~~L~hP~F~~L 73 (106)
.|||||.|.-|
T Consensus 28 ~YLNHPTFGLL 38 (112)
T 3n5b_B 28 TYINHPTWGLL 38 (112)
T ss_dssp CEEEETTTEEE
T ss_pred hhccCCccchh
Confidence 39999998544
No 11
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=33.55 E-value=25 Score=26.06 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=41.6
Q ss_pred CceEEEEEcCcceEEEEeccCCC-cH--HHHHHHHHHHHhcC--CcCCCceEeeCcHHHHHHHHhhhC
Q 046487 44 KGHFAVYVGEHRSRYIVPISFLS-HP--EFQCLLRQAEEEFG--FDHDMGLTIPCEEVVFRSLTSMLR 106 (106)
Q Consensus 44 kG~~aVyVG~~~~RfvVp~~~L~-hP--~F~~LL~~aeeE~G--~~~~G~l~IpC~~~~Fe~vl~~l~ 106 (106)
...+.+.||. .||.+..+-|. +| .|..|... ..++. .+.+|.+-|-.+...|++||..||
T Consensus 11 ~~~V~LNVGG--~~F~Tt~sTL~r~PdS~L~~lfs~-~~~~~~~~De~geyFIDRDP~~F~~ILnyLR 75 (202)
T 3drx_A 11 SKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDETGAYLIDRDPTYFGPVLNYLR 75 (202)
T ss_dssp CCEEEEEETT--EEEEEETTGGGSCTTSSTHHHHSC-CCC----BCTTCCEEECSCSTTHHHHHHHHH
T ss_pred CCEEEEEECC--EEEEEeHHHHhCCCcchHHHHhcC-ccccCcccCCCccEEecCChHHHHHHHHHhc
Confidence 4678889996 69999876664 45 45555321 11232 345788999999999999998764
No 12
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=33.44 E-value=24 Score=29.02 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=28.5
Q ss_pred CccCCCceEEEEE---------cC-cceEEEEeccCCCcHHHHHHHHHHHHhcCC
Q 046487 39 PLDVPKGHFAVYV---------GE-HRSRYIVPISFLSHPEFQCLLRQAEEEFGF 83 (106)
Q Consensus 39 ~~~vpkG~~aVyV---------G~-~~~RfvVp~~~L~hP~F~~LL~~aeeE~G~ 83 (106)
+.+.|++++-+.| |. -++|-..=++ +.||.||+.|.+++++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 4456777776666 32 1223222234 8899999999988888764
No 13
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=28.49 E-value=75 Score=19.75 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=35.5
Q ss_pred EEEEEcCcceEEEEeccCC--CcHHHHHHHHHHHHhcCCcCCCceEee-CcHHHHHHHHhhh
Q 046487 47 FAVYVGEHRSRYIVPISFL--SHPEFQCLLRQAEEEFGFDHDMGLTIP-CEEVVFRSLTSML 105 (106)
Q Consensus 47 ~aVyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeE~G~~~~G~l~Ip-C~~~~Fe~vl~~l 105 (106)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .....+.++ .+.+.|+.+|.-+
T Consensus 28 v~l~v~~--~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVEG--REFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC--EEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHH
Confidence 3455664 5787776666 479999998754333 134578888 6889999988653
No 14
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=26.37 E-value=81 Score=19.81 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=34.7
Q ss_pred EEEEEcCcceEEEEeccCC--CcHHHHHHHHHHHHhcCCcCCCceEee-CcHHHHHHHHhhh
Q 046487 47 FAVYVGEHRSRYIVPISFL--SHPEFQCLLRQAEEEFGFDHDMGLTIP-CEEVVFRSLTSML 105 (106)
Q Consensus 47 ~aVyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeE~G~~~~G~l~Ip-C~~~~Fe~vl~~l 105 (106)
+.+.||+ ++|-+.-..| ..|.|++++... . +..|.|| .+.+.|+.+|.-+
T Consensus 27 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 27 ATLDVGG--LVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC--EEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHH
Confidence 3455664 5777776666 479999888652 1 4578888 5678999988753
No 15
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=26.15 E-value=1.4e+02 Score=19.57 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=33.1
Q ss_pred cCcceEEEEeccC-------CCcHHHHHHHHHHHHhc----C------C-cCCC-ceEeeCcHHHHHHH
Q 046487 52 GEHRSRYIVPISF-------LSHPEFQCLLRQAEEEF----G------F-DHDM-GLTIPCEEVVFRSL 101 (106)
Q Consensus 52 G~~~~RfvVp~~~-------L~hP~F~~LL~~aeeE~----G------~-~~~G-~l~IpC~~~~Fe~v 101 (106)
|.|-|||.++-.- -.-..|..|.++-.+-| | | +++| .|+|.++.++=+.+
T Consensus 19 ~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~~Al 87 (102)
T 2kkc_A 19 AREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAM 87 (102)
T ss_dssp EEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHH
T ss_pred CCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHH
Confidence 3577999997310 00136888888888876 2 2 4467 69999998765443
No 16
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=24.61 E-value=45 Score=25.24 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=25.2
Q ss_pred eEEEEEcCcceEEEEeccCCCcHHHHHHHHHHHHhcCCc
Q 046487 46 HFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFD 84 (106)
Q Consensus 46 ~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeE~G~~ 84 (106)
..-|+-|...+..=.-.+.+++|.|++.++++.+.+|++
T Consensus 11 ~~f~F~GQGsQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 11 FAFVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp EEEEECCTTCCCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred eEEEECCcchhhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 444555543222222233338999999999999998874
No 17
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=24.55 E-value=39 Score=27.35 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCccCCCceEEEEEcCc----------ceEEEEeccCCCcHHHHHHHHHHH-HhcC
Q 046487 38 LPLDVPKGHFAVYVGEH----------RSRYIVPISFLSHPEFQCLLRQAE-EEFG 82 (106)
Q Consensus 38 ~~~~vpkG~~aVyVG~~----------~~RfvVp~~~L~hP~F~~LL~~ae-eE~G 82 (106)
.+.+.|+..+-++|=|- ++|..-=++ +.||.|++.|.+.+ +.||
T Consensus 380 ~~v~~~~~~v~~vVTE~Gva~L~G~~~~Era~~li~-iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 380 AAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIA-IAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp CCEEECTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHHHC
T ss_pred CCceeCccceeEEEcccEEEECCCCCHHHHHHHHhc-CCCCCcHHHHHHHHHHhhC
Confidence 34566777776666330 122211124 99999999776554 4465
No 18
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=23.15 E-value=82 Score=19.76 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=34.2
Q ss_pred EEEEEcCcceEEEEeccCC--CcHHHHHHHHHHHHhcCCcCCCceEeeC-cHHHHHHHHhhh
Q 046487 47 FAVYVGEHRSRYIVPISFL--SHPEFQCLLRQAEEEFGFDHDMGLTIPC-EEVVFRSLTSML 105 (106)
Q Consensus 47 ~aVyVG~~~~RfvVp~~~L--~hP~F~~LL~~aeeE~G~~~~G~l~IpC-~~~~Fe~vl~~l 105 (106)
+.+.||+ ++|-+.-..| ..|.|++++.. ++..+.++- +.+.|+.+|.-+
T Consensus 30 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~ 81 (119)
T 2q81_A 30 CTFVVDG--VHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFM 81 (119)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHH
Confidence 3455664 5788877766 47999999975 234566764 688899888643
No 19
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=22.71 E-value=52 Score=17.23 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcC
Q 046487 70 FQCLLRQAEEEFG 82 (106)
Q Consensus 70 F~~LL~~aeeE~G 82 (106)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888888887
No 20
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=22.58 E-value=5.6 Score=30.35 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=19.7
Q ss_pred ccCCCceEEEEEcCcceEEEEeccCCCcHHHH
Q 046487 40 LDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQ 71 (106)
Q Consensus 40 ~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~ 71 (106)
.+.|+||+|..-.= +=.-+=.+.|+||.|.
T Consensus 200 l~AP~GHLP~~~~l--rG~~l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQL--RGVRVAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCT--TCTHHHHHHHTSTHHH
T ss_pred CCCCCCCCCCcccc--chHHHHHHHHCCcccc
Confidence 36899999986421 1111456788999884
No 21
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=22.27 E-value=23 Score=22.02 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=18.3
Q ss_pred cCCCcHHHHHHHHHHHHhcC
Q 046487 63 SFLSHPEFQCLLRQAEEEFG 82 (106)
Q Consensus 63 ~~L~hP~F~~LL~~aeeE~G 82 (106)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999983
No 22
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=21.89 E-value=28 Score=20.17 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhc--CCcCCCc
Q 046487 70 FQCLLRQAEEEF--GFDHDMG 88 (106)
Q Consensus 70 F~~LL~~aeeE~--G~~~~G~ 88 (106)
+-.+|+.-+||| ||-|.|+
T Consensus 23 Id~vLE~NAeeFV~~fVQKGG 43 (44)
T 3m91_B 23 IDDVLEENAEDFVRAYVQKGG 43 (44)
T ss_dssp HHHHHHHTC------------
T ss_pred HHHHHHHhHHHHHHHHHHccC
Confidence 456778888888 8877764
No 23
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=21.36 E-value=48 Score=20.96 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=35.7
Q ss_pred EEEEEcCcceEEEEeccCCC--cHHHHHHHHHHHHhcCCcCCCceEee--CcHHHHHHHHhhh
Q 046487 47 FAVYVGEHRSRYIVPISFLS--HPEFQCLLRQAEEEFGFDHDMGLTIP--CEEVVFRSLTSML 105 (106)
Q Consensus 47 ~aVyVG~~~~RfvVp~~~L~--hP~F~~LL~~aeeE~G~~~~G~l~Ip--C~~~~Fe~vl~~l 105 (106)
+.+.||+ ++|-+.-..|. .|.|++++..... .+..+.+| .+...|+.+|..+
T Consensus 35 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~~~-----e~~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 35 VTLIVER--KEFRAHRAVLAACSEYFWQALVGQTK-----NDLVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHTTCCC-----SSCEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEechHHHHHHcCHHHHHHhcCCCC-----CCcEEEeCCCCCHHHHHHHHHhH
Confidence 4555664 46777755554 6899998865432 24568886 7999999998754
No 24
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=20.72 E-value=3.3 Score=31.76 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=18.8
Q ss_pred ccCCCceEEEEEcCcceEEEEeccCCCcHHH
Q 046487 40 LDVPKGHFAVYVGEHRSRYIVPISFLSHPEF 70 (106)
Q Consensus 40 ~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F 70 (106)
.+.|+||+|..-. .+=.-+=.+.|+||.|
T Consensus 208 l~AP~GHLP~~~~--lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQ--LRGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCC--TTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCcc--cccHHHHHHHHcCccc
Confidence 3689999998541 1122244678888876
Done!