BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046488
         (480 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
           Methyltransferase Bound With S-Adenosylmethionine And
           Inhibitor Dinitrocatechol
          Length = 214

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC 430
           +TLD++    FLD W D  L D +L +   +LR G +L  D+  C
Sbjct: 132 DTLDMV----FLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVIC 172


>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
           With Bound Sam And Dnc
          Length = 214

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC 430
           +TLD++    FLD W D  L D +L +   +LR G +L  D+  C
Sbjct: 132 DTLDMV----FLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVIC 172


>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
           3,5- Dinitrocatechol
          Length = 216

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC 430
           +TLD++    FLD W D  L D +L +   +LR G +L  D+  C
Sbjct: 135 DTLDMV----FLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVIC 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,986,465
Number of Sequences: 62578
Number of extensions: 649224
Number of successful extensions: 1552
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1552
Number of HSP's gapped (non-prelim): 6
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)