Query 046488
Match_columns 480
No_of_seqs 451 out of 2282
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 12:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 1.8E-48 3.9E-53 409.8 12.4 237 201-477 1-264 (506)
2 PF03141 Methyltransf_29: Puta 100.0 1.4E-28 2.9E-33 259.9 11.3 242 181-473 258-506 (506)
3 COG2226 UbiE Methylase involve 99.7 1.4E-16 3E-21 156.9 15.7 97 327-428 53-157 (238)
4 PF08241 Methyltransf_11: Meth 99.7 3.4E-16 7.5E-21 127.0 8.3 91 330-425 1-95 (95)
5 PF01209 Ubie_methyltran: ubiE 99.6 7.3E-16 1.6E-20 151.0 9.1 110 317-433 41-159 (233)
6 PLN02233 ubiquinone biosynthes 99.6 7.2E-15 1.6E-19 145.5 14.7 105 319-430 69-185 (261)
7 PLN02244 tocopherol O-methyltr 99.5 8E-14 1.7E-18 143.1 14.0 124 326-452 119-276 (340)
8 PTZ00098 phosphoethanolamine N 99.5 3.3E-13 7.2E-18 133.9 13.5 131 318-454 47-202 (263)
9 PF13489 Methyltransf_23: Meth 99.5 3.5E-13 7.5E-18 120.0 12.2 126 314-450 12-159 (161)
10 KOG1540 Ubiquinone biosynthesi 99.5 3.3E-13 7.3E-18 133.6 11.3 107 321-432 96-219 (296)
11 PLN02396 hexaprenyldihydroxybe 99.5 4.3E-13 9.4E-18 137.4 12.2 119 327-451 133-286 (322)
12 PRK14103 trans-aconitate 2-met 99.4 4.7E-13 1E-17 131.1 10.7 122 327-455 31-185 (255)
13 TIGR02752 MenG_heptapren 2-hep 99.4 2E-12 4.4E-17 123.9 14.6 103 318-427 40-151 (231)
14 PRK15068 tRNA mo(5)U34 methylt 99.4 8.1E-13 1.8E-17 135.1 12.1 122 327-454 124-274 (322)
15 PRK11036 putative S-adenosyl-L 99.4 1.2E-12 2.5E-17 128.5 12.3 123 326-453 45-206 (255)
16 PRK10258 biotin biosynthesis p 99.4 1.5E-12 3.3E-17 126.8 12.6 98 326-429 43-142 (251)
17 TIGR00452 methyltransferase, p 99.4 2.2E-12 4.7E-17 131.9 13.9 126 326-457 122-276 (314)
18 PLN02336 phosphoethanolamine N 99.4 3E-12 6.5E-17 136.0 14.3 120 327-452 268-412 (475)
19 PLN02490 MPBQ/MSBQ methyltrans 99.4 6.8E-12 1.5E-16 129.6 15.9 145 327-476 115-283 (340)
20 PRK05785 hypothetical protein; 99.4 1.8E-12 4E-17 126.0 9.6 88 327-421 53-141 (226)
21 PRK11873 arsM arsenite S-adeno 99.4 7.3E-12 1.6E-16 123.5 13.8 127 320-453 74-229 (272)
22 PRK11207 tellurite resistance 99.3 5E-12 1.1E-16 120.1 10.8 109 315-427 22-134 (197)
23 TIGR00477 tehB tellurite resis 99.3 1.4E-11 3E-16 116.9 10.8 107 317-429 24-135 (195)
24 smart00828 PKS_MT Methyltransf 99.3 3.1E-11 6.8E-16 115.1 12.6 122 328-453 2-143 (224)
25 PRK08317 hypothetical protein; 99.3 6.3E-11 1.4E-15 111.8 14.0 103 317-427 13-124 (241)
26 PF02353 CMAS: Mycolic acid cy 99.3 2.6E-11 5.6E-16 121.7 11.5 132 317-454 56-217 (273)
27 TIGR03587 Pse_Me-ase pseudamin 99.3 1E-10 2.2E-15 112.3 14.7 97 327-430 45-145 (204)
28 TIGR02072 BioC biotin biosynth 99.3 3.2E-11 7E-16 114.1 10.7 96 327-428 36-136 (240)
29 PRK15451 tRNA cmo(5)U34 methyl 99.2 4.1E-11 8.9E-16 117.5 11.0 98 327-429 58-166 (247)
30 PF12847 Methyltransf_18: Meth 99.2 3E-11 6.5E-16 102.4 8.7 97 327-426 3-110 (112)
31 PRK00216 ubiE ubiquinone/menaq 99.2 3.3E-10 7.2E-15 107.6 16.7 97 327-428 53-159 (239)
32 PF07021 MetW: Methionine bios 99.2 7.3E-11 1.6E-15 113.1 12.0 124 321-455 11-168 (193)
33 PRK12335 tellurite resistance 99.2 5.6E-11 1.2E-15 119.1 11.6 97 328-426 123-222 (287)
34 COG2227 UbiG 2-polyprenyl-3-me 99.2 1.3E-11 2.8E-16 121.5 6.6 98 327-427 61-161 (243)
35 PRK01683 trans-aconitate 2-met 99.2 6E-11 1.3E-15 115.9 11.2 93 327-426 33-129 (258)
36 PF08003 Methyltransf_9: Prote 99.2 1.6E-10 3.5E-15 117.4 13.5 128 325-456 115-269 (315)
37 PRK11188 rrmJ 23S rRNA methylt 99.2 2E-10 4.4E-15 110.6 13.6 138 321-470 49-205 (209)
38 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 2.8E-10 6E-15 107.0 13.7 97 327-428 41-144 (223)
39 PF13847 Methyltransf_31: Meth 99.2 8.9E-11 1.9E-15 106.1 9.5 97 327-429 5-112 (152)
40 PF13649 Methyltransf_25: Meth 99.2 2.4E-11 5.2E-16 102.6 5.2 90 329-421 1-101 (101)
41 PRK11088 rrmA 23S rRNA methylt 99.2 1E-10 2.2E-15 116.1 10.3 89 327-427 87-181 (272)
42 KOG4300 Predicted methyltransf 99.2 5.7E-11 1.2E-15 115.0 7.8 111 328-444 79-201 (252)
43 TIGR00740 methyltransferase, p 99.2 9.5E-11 2.1E-15 113.7 9.5 98 327-429 55-163 (239)
44 PLN02336 phosphoethanolamine N 99.2 1.6E-10 3.4E-15 122.9 11.6 122 327-451 39-179 (475)
45 smart00138 MeTrc Methyltransfe 99.2 1.3E-10 2.7E-15 115.8 10.1 98 326-427 100-242 (264)
46 PF05148 Methyltransf_8: Hypot 99.2 3.2E-10 7E-15 110.0 12.4 143 309-476 58-200 (219)
47 PF05401 NodS: Nodulation prot 99.2 3.4E-10 7.3E-15 109.0 12.4 150 321-478 39-201 (201)
48 TIGR02081 metW methionine bios 99.1 6E-10 1.3E-14 105.0 13.3 121 328-455 16-168 (194)
49 COG2230 Cfa Cyclopropane fatty 99.1 1.6E-10 3.5E-15 116.6 10.0 110 315-427 64-176 (283)
50 PRK04266 fibrillarin; Provisio 99.1 4.6E-10 9.9E-15 109.9 12.2 127 319-455 68-211 (226)
51 PF08242 Methyltransf_12: Meth 99.1 3.6E-11 7.9E-16 100.6 3.7 91 330-423 1-99 (99)
52 TIGR02716 C20_methyl_CrtF C-20 99.1 6.5E-10 1.4E-14 111.9 12.4 104 317-428 143-255 (306)
53 PRK11705 cyclopropane fatty ac 99.1 3.6E-10 7.8E-15 118.4 10.6 102 317-427 161-267 (383)
54 PRK06922 hypothetical protein; 99.1 3E-10 6.6E-15 125.3 10.4 106 318-427 413-537 (677)
55 PRK06202 hypothetical protein; 99.1 6.2E-10 1.3E-14 107.6 11.4 95 326-426 61-165 (232)
56 PRK00121 trmB tRNA (guanine-N( 99.1 6.4E-10 1.4E-14 106.2 10.4 118 326-448 41-175 (202)
57 TIGR00537 hemK_rel_arch HemK-r 99.1 2E-09 4.4E-14 100.1 13.3 131 314-450 10-161 (179)
58 TIGR00438 rrmJ cell division p 99.1 2.4E-09 5.2E-14 100.5 13.3 137 321-469 30-185 (188)
59 PRK00517 prmA ribosomal protei 99.1 8.7E-10 1.9E-14 108.5 10.8 127 327-474 121-250 (250)
60 KOG1541 Predicted protein carb 99.1 9.1E-10 2E-14 107.6 10.5 128 317-448 42-181 (270)
61 PF03848 TehB: Tellurite resis 99.0 1E-09 2.2E-14 105.4 10.4 99 328-428 33-134 (192)
62 TIGR00138 gidB 16S rRNA methyl 99.0 1.7E-09 3.7E-14 102.1 11.1 117 327-451 44-166 (181)
63 TIGR02021 BchM-ChlM magnesium 99.0 1.9E-09 4.2E-14 103.1 11.4 120 326-451 56-203 (219)
64 PRK00107 gidB 16S rRNA methylt 99.0 5.5E-09 1.2E-13 99.6 13.8 113 327-450 47-165 (187)
65 PRK08287 cobalt-precorrin-6Y C 99.0 6.8E-09 1.5E-13 97.2 14.1 123 317-451 25-153 (187)
66 PRK05134 bifunctional 3-demeth 99.0 7.8E-09 1.7E-13 99.4 13.3 98 327-427 50-151 (233)
67 TIGR03840 TMPT_Se_Te thiopurin 99.0 2.4E-09 5.2E-14 103.8 9.6 99 327-428 36-153 (213)
68 TIGR01983 UbiG ubiquinone bios 99.0 5.1E-09 1.1E-13 99.6 11.2 98 326-428 46-150 (224)
69 KOG1270 Methyltransferases [Co 98.9 1.2E-09 2.5E-14 109.1 6.1 93 326-427 90-195 (282)
70 PTZ00146 fibrillarin; Provisio 98.9 1.6E-08 3.4E-13 102.9 13.9 145 319-474 128-289 (293)
71 PRK13255 thiopurine S-methyltr 98.9 6.3E-09 1.4E-13 101.2 10.0 96 327-425 39-153 (218)
72 TIGR02469 CbiT precorrin-6Y C5 98.9 1.3E-08 2.9E-13 86.9 10.8 102 317-426 13-121 (124)
73 PRK14968 putative methyltransf 98.9 2.2E-08 4.7E-13 92.1 12.7 121 327-450 25-169 (188)
74 COG2264 PrmA Ribosomal protein 98.9 1.4E-08 3E-13 103.5 12.1 118 326-452 163-286 (300)
75 TIGR03534 RF_mod_PrmC protein- 98.9 1.2E-08 2.6E-13 98.4 11.0 132 314-451 76-238 (251)
76 TIGR00091 tRNA (guanine-N(7)-) 98.9 9.2E-09 2E-13 97.5 10.0 119 327-449 18-153 (194)
77 PRK00377 cbiT cobalt-precorrin 98.9 4.1E-08 8.8E-13 93.1 14.2 126 319-454 36-172 (198)
78 PRK13944 protein-L-isoaspartat 98.9 1.2E-08 2.6E-13 97.6 10.6 99 317-426 66-172 (205)
79 TIGR00406 prmA ribosomal prote 98.9 1.7E-08 3.7E-13 101.6 12.1 113 327-448 161-277 (288)
80 PF06325 PrmA: Ribosomal prote 98.9 3.4E-08 7.4E-13 100.5 14.1 129 327-473 163-294 (295)
81 PRK07580 Mg-protoporphyrin IX 98.8 2.5E-08 5.3E-13 95.2 11.6 95 327-425 65-164 (230)
82 TIGR01177 conserved hypothetic 98.8 1.9E-08 4.2E-13 102.8 10.8 123 318-447 177-309 (329)
83 KOG3010 Methyltransferase [Gen 98.8 1.1E-08 2.4E-13 101.1 8.6 101 317-425 26-135 (261)
84 KOG3045 Predicted RNA methylas 98.8 3.2E-08 6.8E-13 98.9 10.9 139 310-475 167-305 (325)
85 PRK13942 protein-L-isoaspartat 98.8 2.6E-08 5.7E-13 95.9 9.6 99 317-426 70-175 (212)
86 KOG2361 Predicted methyltransf 98.7 7.6E-08 1.6E-12 95.3 11.8 156 317-475 63-264 (264)
87 TIGR00080 pimt protein-L-isoas 98.7 3.3E-08 7.2E-13 94.9 9.2 99 317-426 71-176 (215)
88 PRK09489 rsmC 16S ribosomal RN 98.7 7.7E-08 1.7E-12 99.6 11.8 99 328-427 199-303 (342)
89 PRK10901 16S rRNA methyltransf 98.7 3.7E-07 8E-12 96.8 16.3 159 311-473 232-426 (427)
90 PLN02232 ubiquinone biosynthes 98.7 4.1E-08 8.9E-13 90.6 7.8 57 371-430 28-84 (160)
91 PRK14967 putative methyltransf 98.7 2E-07 4.4E-12 90.0 12.7 117 327-448 38-178 (223)
92 PF13659 Methyltransf_26: Meth 98.7 4.1E-08 8.8E-13 83.9 6.8 96 328-426 3-114 (117)
93 PRK15001 SAM-dependent 23S rib 98.7 9.8E-08 2.1E-12 100.2 10.9 112 309-427 215-340 (378)
94 PLN03075 nicotianamine synthas 98.7 1.4E-07 3E-12 96.2 11.3 100 326-427 124-233 (296)
95 PRK14121 tRNA (guanine-N(7)-)- 98.7 6.1E-08 1.3E-12 102.1 8.7 99 327-426 124-234 (390)
96 cd02440 AdoMet_MTases S-adenos 98.7 1.1E-07 2.5E-12 75.6 8.3 97 328-426 1-103 (107)
97 PRK14901 16S rRNA methyltransf 98.7 3.7E-07 7.9E-12 97.1 14.6 159 312-474 241-433 (434)
98 COG4976 Predicted methyltransf 98.6 5.8E-08 1.3E-12 95.7 6.6 134 315-453 114-264 (287)
99 TIGR00563 rsmB ribosomal RNA s 98.6 7E-07 1.5E-11 94.6 15.3 157 311-473 226-425 (426)
100 COG4123 Predicted O-methyltran 98.6 6.9E-07 1.5E-11 89.1 14.1 140 306-453 26-193 (248)
101 PRK07402 precorrin-6B methylas 98.6 5.7E-07 1.2E-11 85.0 12.8 122 314-446 31-159 (196)
102 PRK09328 N5-glutamine S-adenos 98.6 4.8E-07 1E-11 88.9 12.6 119 327-452 110-260 (275)
103 PRK00312 pcm protein-L-isoaspa 98.6 2.7E-07 5.9E-12 88.1 10.3 98 317-427 72-175 (212)
104 PLN02585 magnesium protoporphy 98.6 4.3E-07 9.2E-12 93.3 12.2 116 327-450 146-295 (315)
105 PF06080 DUF938: Protein of un 98.6 6.6E-07 1.4E-11 86.9 12.1 99 328-427 28-141 (204)
106 TIGR00446 nop2p NOL1/NOP2/sun 98.6 7.1E-07 1.5E-11 88.9 12.6 114 312-427 60-199 (264)
107 PF00891 Methyltransf_2: O-met 98.6 1.6E-07 3.5E-12 91.2 7.8 99 324-429 99-201 (241)
108 PRK14902 16S rRNA methyltransf 98.5 1.1E-06 2.4E-11 93.6 14.0 158 312-474 239-443 (444)
109 PF05175 MTS: Methyltransferas 98.5 2.1E-07 4.7E-12 86.4 7.5 96 327-426 33-139 (170)
110 PRK14904 16S rRNA methyltransf 98.5 1.6E-06 3.5E-11 92.4 14.9 127 314-445 241-396 (445)
111 TIGR03438 probable methyltrans 98.5 3.7E-07 8.1E-12 92.5 9.4 97 327-426 65-176 (301)
112 PF05219 DREV: DREV methyltran 98.5 9.4E-07 2E-11 88.5 11.1 126 325-458 94-244 (265)
113 TIGR03533 L3_gln_methyl protei 98.4 2E-06 4.2E-11 86.8 12.0 117 327-448 123-268 (284)
114 PRK14966 unknown domain/N5-glu 98.4 3E-06 6.5E-11 90.2 13.8 152 311-473 238-420 (423)
115 COG4106 Tam Trans-aconitate me 98.4 7.4E-07 1.6E-11 87.4 8.4 97 323-426 28-128 (257)
116 KOG2940 Predicted methyltransf 98.4 4.7E-07 1E-11 89.4 6.9 105 317-426 65-173 (325)
117 PHA03411 putative methyltransf 98.4 2.1E-06 4.6E-11 86.9 11.5 118 327-448 66-208 (279)
118 PRK13256 thiopurine S-methyltr 98.4 2.2E-06 4.7E-11 84.4 10.6 99 327-428 45-164 (226)
119 TIGR00536 hemK_fam HemK family 98.4 3E-06 6.4E-11 85.1 11.8 121 327-451 116-266 (284)
120 COG2813 RsmC 16S RNA G1207 met 98.3 2.3E-06 4.9E-11 87.4 9.8 114 310-428 146-267 (300)
121 PRK13943 protein-L-isoaspartat 98.3 1.6E-06 3.6E-11 89.3 8.2 98 317-425 74-178 (322)
122 PRK11805 N5-glutamine S-adenos 98.3 3.8E-06 8.3E-11 85.8 10.7 117 327-448 135-280 (307)
123 COG2242 CobL Precorrin-6B meth 98.3 2.1E-05 4.5E-10 75.5 14.7 117 317-448 28-154 (187)
124 PRK14903 16S rRNA methyltransf 98.3 4.8E-06 1E-10 88.8 11.7 115 313-429 227-368 (431)
125 PF05891 Methyltransf_PK: AdoM 98.3 8.8E-06 1.9E-10 79.7 12.1 128 325-454 55-201 (218)
126 smart00650 rADc Ribosomal RNA 98.3 3E-06 6.5E-11 78.4 8.5 100 319-426 9-112 (169)
127 PF01728 FtsJ: FtsJ-like methy 98.3 2.1E-06 4.6E-11 79.9 7.4 149 317-469 14-178 (181)
128 TIGR03704 PrmC_rel_meth putati 98.3 8.5E-06 1.8E-10 80.9 11.6 134 311-448 70-234 (251)
129 COG0500 SmtA SAM-dependent met 98.2 9.4E-06 2E-10 65.4 9.2 94 329-428 52-156 (257)
130 PRK00811 spermidine synthase; 98.2 1.2E-05 2.7E-10 81.0 12.0 117 325-445 76-211 (283)
131 PF01135 PCMT: Protein-L-isoas 98.2 2.9E-06 6.3E-11 82.5 7.0 98 316-425 65-170 (209)
132 KOG1271 Methyltransferases [Ge 98.2 4.6E-06 1E-10 80.1 8.1 122 327-451 69-202 (227)
133 PRK04457 spermidine synthase; 98.2 1.9E-05 4.1E-10 79.0 12.9 118 326-449 67-197 (262)
134 PRK01544 bifunctional N5-gluta 98.2 8.2E-06 1.8E-10 88.7 11.0 119 327-450 140-289 (506)
135 PF03291 Pox_MCEL: mRNA cappin 98.2 3.8E-06 8.3E-11 86.9 8.0 123 292-426 39-185 (331)
136 COG2521 Predicted archaeal met 98.2 5.8E-06 1.3E-10 82.0 8.8 122 326-451 135-274 (287)
137 COG2518 Pcm Protein-L-isoaspar 98.2 7.2E-06 1.6E-10 80.0 8.9 97 315-426 64-168 (209)
138 PRK03612 spermidine synthase; 98.1 1.3E-05 2.7E-10 87.5 11.3 118 326-447 298-437 (521)
139 COG2519 GCD14 tRNA(1-methylade 98.1 2E-05 4.2E-10 78.9 11.2 124 314-450 85-216 (256)
140 KOG1975 mRNA cap methyltransfe 98.1 4.3E-06 9.4E-11 86.0 6.1 101 326-426 118-236 (389)
141 PRK13168 rumA 23S rRNA m(5)U19 98.1 6.2E-05 1.3E-09 80.3 14.2 114 327-452 299-422 (443)
142 TIGR00417 speE spermidine synt 98.0 0.00011 2.3E-09 73.5 14.6 98 325-426 72-185 (270)
143 KOG1331 Predicted methyltransf 98.0 3.4E-06 7.3E-11 85.4 3.6 98 327-429 47-145 (293)
144 PF05724 TPMT: Thiopurine S-me 98.0 4E-05 8.7E-10 74.9 11.0 130 319-454 33-190 (218)
145 PRK01581 speE spermidine synth 98.0 4.7E-05 1E-09 80.0 11.9 123 325-451 150-294 (374)
146 PF02390 Methyltransf_4: Putat 98.0 2.7E-05 5.9E-10 74.7 9.1 98 328-426 20-132 (195)
147 COG2890 HemK Methylase of poly 98.0 9.2E-05 2E-09 74.9 13.2 117 328-447 113-255 (280)
148 PF08704 GCD14: tRNA methyltra 98.0 4.8E-05 1E-09 75.9 10.8 125 314-450 31-167 (247)
149 TIGR00478 tly hemolysin TlyA f 97.9 5.2E-05 1.1E-09 74.8 9.8 87 326-426 76-170 (228)
150 PLN02781 Probable caffeoyl-CoA 97.9 2.9E-05 6.4E-10 76.3 8.0 106 314-427 59-178 (234)
151 PRK10611 chemotaxis methyltran 97.9 2.5E-05 5.4E-10 79.5 7.6 97 327-427 117-262 (287)
152 PHA03412 putative methyltransf 97.9 4.2E-05 9.1E-10 76.1 8.9 92 327-422 51-158 (241)
153 KOG2899 Predicted methyltransf 97.9 5.5E-05 1.2E-09 75.5 9.4 98 325-426 58-208 (288)
154 KOG1269 SAM-dependent methyltr 97.9 1.1E-05 2.5E-10 84.5 4.7 102 321-427 108-215 (364)
155 KOG1499 Protein arginine N-met 97.8 2.6E-05 5.6E-10 80.9 6.4 99 326-424 61-164 (346)
156 TIGR00479 rumA 23S rRNA (uraci 97.8 0.00015 3.3E-09 76.8 12.5 116 327-451 294-417 (431)
157 PLN02366 spermidine synthase 97.8 0.00019 4.1E-09 73.8 12.4 115 326-445 92-226 (308)
158 PF11968 DUF3321: Putative met 97.8 0.00012 2.6E-09 71.8 9.1 117 327-455 53-182 (219)
159 PRK11783 rlmL 23S rRNA m(2)G24 97.7 6.1E-05 1.3E-09 85.0 7.8 120 327-449 540-675 (702)
160 PF10294 Methyltransf_16: Puta 97.7 0.00017 3.7E-09 67.7 9.1 102 326-430 46-159 (173)
161 PRK03522 rumB 23S rRNA methylu 97.7 0.00023 5.1E-09 72.6 10.5 94 327-426 175-273 (315)
162 PF01739 CheR: CheR methyltran 97.7 0.00013 2.8E-09 70.4 8.1 99 324-426 30-174 (196)
163 COG0220 Predicted S-adenosylme 97.7 0.00013 2.8E-09 72.0 8.0 99 327-426 50-163 (227)
164 PLN02672 methionine S-methyltr 97.6 0.00029 6.3E-09 82.7 10.9 126 327-455 120-305 (1082)
165 COG1041 Predicted DNA modifica 97.6 0.0004 8.6E-09 72.4 10.4 120 320-451 194-327 (347)
166 KOG3178 Hydroxyindole-O-methyl 97.6 0.00015 3.4E-09 75.3 6.9 97 325-428 177-276 (342)
167 PRK14896 ksgA 16S ribosomal RN 97.5 0.00028 6E-09 70.2 8.3 74 317-397 23-101 (258)
168 PRK15128 23S rRNA m(5)C1962 me 97.5 0.00037 8.1E-09 73.9 9.7 99 327-426 222-338 (396)
169 PRK04148 hypothetical protein; 97.5 0.00058 1.3E-08 62.5 9.2 91 327-428 18-110 (134)
170 PRK00274 ksgA 16S ribosomal RN 97.5 0.00025 5.4E-09 71.0 7.0 73 318-394 37-112 (272)
171 PLN02476 O-methyltransferase 97.5 0.00027 5.9E-09 71.8 7.2 105 315-427 110-228 (278)
172 PF01596 Methyltransf_3: O-met 97.5 0.00026 5.6E-09 68.8 6.7 96 326-427 46-155 (205)
173 COG1352 CheR Methylase of chem 97.4 0.00074 1.6E-08 68.3 9.8 42 384-426 199-240 (268)
174 PF05185 PRMT5: PRMT5 arginine 97.4 0.0005 1.1E-08 74.1 9.1 97 326-424 187-294 (448)
175 COG0293 FtsJ 23S rRNA methylas 97.4 0.0021 4.6E-08 62.8 12.5 135 327-473 47-202 (205)
176 COG4122 Predicted O-methyltran 97.4 0.00033 7.1E-09 68.9 7.0 108 314-429 50-168 (219)
177 TIGR02085 meth_trns_rumB 23S r 97.4 0.0011 2.3E-08 69.7 11.2 114 327-451 235-353 (374)
178 PRK11933 yebU rRNA (cytosine-C 97.4 0.0042 9.1E-08 67.5 16.0 112 314-427 102-242 (470)
179 PRK01544 bifunctional N5-gluta 97.4 0.00052 1.1E-08 74.9 9.0 100 325-426 347-461 (506)
180 TIGR00755 ksgA dimethyladenosi 97.3 0.001 2.2E-08 65.6 8.9 65 326-394 30-101 (253)
181 COG4627 Uncharacterized protei 97.2 0.00013 2.7E-09 68.7 0.8 48 378-426 38-85 (185)
182 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.0022 4.8E-08 64.5 9.6 94 378-473 144-256 (256)
183 PF12147 Methyltransf_20: Puta 97.1 0.0017 3.7E-08 66.5 8.6 128 324-451 134-295 (311)
184 PRK11727 23S rRNA mA1618 methy 97.1 0.0056 1.2E-07 63.5 12.4 72 324-395 113-197 (321)
185 PF07942 N2227: N2227-like pro 97.1 0.0038 8.2E-08 63.3 10.7 125 327-454 58-242 (270)
186 PRK10909 rsmD 16S rRNA m(2)G96 97.1 0.0021 4.6E-08 62.1 8.1 98 327-428 55-160 (199)
187 PLN02589 caffeoyl-CoA O-methyl 96.9 0.0016 3.4E-08 65.1 6.4 96 326-427 80-190 (247)
188 PLN02823 spermine synthase 96.9 0.008 1.7E-07 62.7 11.8 98 325-426 103-219 (336)
189 PTZ00338 dimethyladenosine tra 96.9 0.0023 5E-08 65.3 6.9 74 318-395 31-109 (294)
190 KOG2904 Predicted methyltransf 96.8 0.007 1.5E-07 61.8 9.7 99 328-426 151-284 (328)
191 KOG1661 Protein-L-isoaspartate 96.8 0.0016 3.5E-08 64.0 4.6 91 321-425 80-191 (237)
192 COG2263 Predicted RNA methylas 96.8 0.0041 8.8E-08 60.3 7.2 66 326-394 46-115 (198)
193 PF02527 GidB: rRNA small subu 96.6 0.0096 2.1E-07 57.1 8.6 116 328-451 51-172 (184)
194 PRK00536 speE spermidine synth 96.6 0.021 4.6E-07 57.7 11.3 109 324-448 71-193 (262)
195 KOG3191 Predicted N6-DNA-methy 96.6 0.018 3.8E-07 55.8 10.0 124 321-448 39-187 (209)
196 KOG3987 Uncharacterized conser 96.5 0.0016 3.6E-08 64.0 2.4 134 316-457 99-263 (288)
197 PF01269 Fibrillarin: Fibrilla 96.3 0.058 1.3E-06 53.6 12.4 143 319-473 69-229 (229)
198 PF02475 Met_10: Met-10+ like- 96.3 0.007 1.5E-07 58.8 5.9 94 321-424 99-199 (200)
199 TIGR00095 RNA methyltransferas 96.3 0.016 3.5E-07 55.3 8.1 97 327-427 51-159 (189)
200 COG0144 Sun tRNA and rRNA cyto 96.2 0.18 3.9E-06 52.9 16.3 115 311-427 144-288 (355)
201 PRK11760 putative 23S rRNA C24 96.2 0.0082 1.8E-07 63.0 6.2 84 327-420 213-296 (357)
202 KOG1663 O-methyltransferase [S 96.2 0.015 3.2E-07 57.8 7.4 106 314-427 64-183 (237)
203 PRK04338 N(2),N(2)-dimethylgua 96.2 0.01 2.2E-07 62.9 6.6 93 327-426 59-157 (382)
204 PF01170 UPF0020: Putative RNA 96.2 0.013 2.8E-07 55.4 6.7 99 327-425 30-149 (179)
205 COG0030 KsgA Dimethyladenosine 96.1 0.0087 1.9E-07 60.4 5.7 88 292-394 7-102 (259)
206 COG0421 SpeE Spermidine syntha 96.1 0.044 9.5E-07 56.0 10.6 115 324-445 75-210 (282)
207 PRK05031 tRNA (uracil-5-)-meth 96.0 0.036 7.7E-07 58.1 9.7 29 328-356 209-237 (362)
208 KOG4589 Cell division protein 96.0 0.061 1.3E-06 52.5 10.2 138 327-476 71-230 (232)
209 COG3963 Phospholipid N-methylt 95.9 0.041 8.9E-07 52.7 8.8 106 321-429 44-158 (194)
210 PF01564 Spermine_synth: Sperm 95.9 0.18 3.8E-06 50.3 13.5 119 325-447 76-213 (246)
211 COG4798 Predicted methyltransf 95.9 0.038 8.2E-07 54.1 8.4 128 320-450 45-201 (238)
212 KOG1500 Protein arginine N-met 95.8 0.026 5.6E-07 59.2 7.4 98 325-424 177-279 (517)
213 PF09243 Rsm22: Mitochondrial 95.7 0.079 1.7E-06 53.5 10.3 94 326-427 34-139 (274)
214 KOG2915 tRNA(1-methyladenosine 95.2 0.16 3.6E-06 51.9 10.6 127 314-451 96-232 (314)
215 PF02384 N6_Mtase: N-6 DNA Met 95.0 0.07 1.5E-06 53.9 7.5 111 314-426 37-182 (311)
216 COG0357 GidB Predicted S-adeno 94.9 0.42 9.1E-06 47.2 12.3 118 327-451 69-192 (215)
217 KOG2352 Predicted spermine/spe 94.7 0.043 9.3E-07 59.6 5.3 99 328-428 51-162 (482)
218 COG1092 Predicted SAM-dependen 94.6 0.1 2.2E-06 55.7 7.6 101 327-427 219-336 (393)
219 PRK13699 putative methylase; P 94.5 0.078 1.7E-06 52.2 6.1 45 407-454 52-99 (227)
220 COG2520 Predicted methyltransf 94.4 0.69 1.5E-05 48.7 13.2 126 323-457 188-325 (341)
221 KOG0820 Ribosomal RNA adenine 94.2 0.18 3.9E-06 51.7 8.0 69 320-394 55-130 (315)
222 TIGR03439 methyl_EasF probable 94.1 0.7 1.5E-05 48.1 12.5 140 328-470 79-262 (319)
223 COG1189 Predicted rRNA methyla 94.0 0.56 1.2E-05 47.1 10.9 143 293-455 55-225 (245)
224 KOG3201 Uncharacterized conser 93.8 0.031 6.8E-07 53.3 1.7 119 327-449 31-161 (201)
225 TIGR00308 TRM1 tRNA(guanine-26 93.6 0.13 2.8E-06 54.5 6.1 92 328-426 47-146 (374)
226 PRK00050 16S rRNA m(4)C1402 me 93.4 0.1 2.2E-06 53.7 4.8 35 320-356 16-53 (296)
227 PF13578 Methyltransf_24: Meth 93.0 0.03 6.6E-07 47.4 0.3 92 330-427 1-105 (106)
228 TIGR02987 met_A_Alw26 type II 92.8 0.43 9.2E-06 52.3 8.8 21 326-346 32-52 (524)
229 PF05958 tRNA_U5-meth_tr: tRNA 92.8 1.3 2.7E-05 46.5 11.9 29 328-356 199-227 (352)
230 PF08123 DOT1: Histone methyla 92.8 0.094 2E-06 51.1 3.3 103 317-426 36-157 (205)
231 PF00398 RrnaAD: Ribosomal RNA 92.4 0.31 6.8E-06 48.6 6.6 74 317-394 24-104 (262)
232 TIGR02143 trmA_only tRNA (urac 92.4 0.22 4.8E-06 52.1 5.7 29 328-356 200-228 (353)
233 PF09445 Methyltransf_15: RNA 92.4 0.17 3.6E-06 47.9 4.3 30 327-356 1-30 (163)
234 COG5459 Predicted rRNA methyla 92.3 0.19 4E-06 53.3 4.8 101 327-427 115-225 (484)
235 COG1889 NOP1 Fibrillarin-like 92.1 3.4 7.4E-05 41.0 12.9 125 319-451 72-211 (231)
236 PF13679 Methyltransf_32: Meth 92.1 0.38 8.1E-06 43.5 6.1 33 325-357 25-63 (141)
237 PF04816 DUF633: Family of unk 91.8 2.7 5.8E-05 41.1 12.0 117 329-456 1-126 (205)
238 PF04672 Methyltransf_19: S-ad 91.4 0.53 1.2E-05 47.9 6.9 104 325-431 68-194 (267)
239 PF03269 DUF268: Caenorhabditi 91.0 0.18 4E-06 48.0 2.9 44 383-426 59-110 (177)
240 TIGR01444 fkbM_fam methyltrans 91.0 0.34 7.4E-06 42.8 4.5 30 328-357 1-32 (143)
241 cd08254 hydroxyacyl_CoA_DH 6-h 90.6 2.1 4.6E-05 42.4 10.3 94 320-427 162-263 (338)
242 PRK11783 rlmL 23S rRNA m(2)G24 90.6 0.65 1.4E-05 53.0 7.4 100 327-426 192-346 (702)
243 PLN02668 indole-3-acetate carb 90.6 0.95 2.1E-05 48.4 8.2 20 381-401 156-175 (386)
244 PF10672 Methyltrans_SAM: S-ad 90.5 0.47 1E-05 48.7 5.6 98 327-426 125-237 (286)
245 COG2265 TrmA SAM-dependent met 90.4 1 2.2E-05 48.7 8.4 112 327-448 295-414 (432)
246 COG3897 Predicted methyltransf 90.4 0.35 7.7E-06 47.5 4.4 92 326-425 80-176 (218)
247 KOG1709 Guanidinoacetate methy 90.4 0.4 8.7E-06 47.9 4.8 100 327-431 103-210 (271)
248 PF03602 Cons_hypoth95: Conser 90.4 0.24 5.2E-06 47.3 3.2 96 327-427 44-153 (183)
249 KOG3115 Methyltransferase-like 88.8 1.1 2.3E-05 44.6 6.3 23 328-350 63-85 (249)
250 COG4076 Predicted RNA methylas 88.7 0.71 1.5E-05 45.4 5.0 92 328-425 35-133 (252)
251 KOG3420 Predicted RNA methylas 88.2 0.64 1.4E-05 44.0 4.2 69 325-396 48-123 (185)
252 PF06859 Bin3: Bicoid-interact 87.9 0.17 3.7E-06 45.1 0.2 39 387-426 1-43 (110)
253 cd08283 FDH_like_1 Glutathione 87.5 2.5 5.4E-05 44.0 8.6 102 318-427 179-306 (386)
254 KOG2793 Putative N2,N2-dimethy 87.1 4.6 0.0001 40.8 9.9 103 326-431 87-203 (248)
255 COG0742 N6-adenine-specific me 86.1 3.3 7.2E-05 40.2 7.9 97 327-426 45-153 (187)
256 PRK11524 putative methyltransf 85.6 2 4.3E-05 43.4 6.5 20 407-426 60-79 (284)
257 KOG1099 SAM-dependent methyltr 84.8 0.13 2.9E-06 51.6 -2.3 98 326-429 42-165 (294)
258 PF01189 Nol1_Nop2_Fmu: NOL1/N 84.7 2.7 5.9E-05 42.7 7.0 114 312-427 74-219 (283)
259 PF10354 DUF2431: Domain of un 84.3 12 0.00026 35.3 10.7 117 332-450 3-148 (166)
260 COG1064 AdhP Zn-dependent alco 84.2 2.5 5.4E-05 44.5 6.6 94 321-429 164-261 (339)
261 PF07757 AdoMet_MTase: Predict 83.7 0.71 1.5E-05 41.3 2.0 30 326-355 59-88 (112)
262 PRK10742 putative methyltransf 83.6 2.1 4.5E-05 43.4 5.5 43 314-356 77-119 (250)
263 PF00107 ADH_zinc_N: Zinc-bind 83.3 3.1 6.6E-05 35.9 5.9 84 335-430 1-92 (130)
264 PF03492 Methyltransf_7: SAM d 82.5 7.5 0.00016 40.6 9.3 20 379-398 99-118 (334)
265 cd00315 Cyt_C5_DNA_methylase C 81.7 43 0.00092 33.8 14.1 137 328-470 2-162 (275)
266 KOG1122 tRNA and rRNA cytosine 80.7 8.6 0.00019 41.8 9.0 106 321-427 237-371 (460)
267 TIGR02822 adh_fam_2 zinc-bindi 79.2 14 0.0003 37.6 9.8 93 319-428 161-255 (329)
268 KOG1596 Fibrillarin and relate 77.9 18 0.0004 37.0 9.8 99 319-426 152-260 (317)
269 KOG2187 tRNA uracil-5-methyltr 77.3 2.4 5.2E-05 46.9 3.8 41 314-356 374-414 (534)
270 cd08230 glucose_DH Glucose deh 75.6 17 0.00037 37.0 9.4 92 328-428 175-270 (355)
271 PF05971 Methyltransf_10: Prot 75.3 8.5 0.00018 40.0 7.0 89 309-397 81-187 (299)
272 PRK09880 L-idonate 5-dehydroge 74.1 16 0.00034 37.2 8.6 90 327-428 171-267 (343)
273 PF04445 SAM_MT: Putative SAM- 73.2 4.7 0.0001 40.4 4.4 88 312-399 62-163 (234)
274 cd08234 threonine_DH_like L-th 71.0 25 0.00054 35.0 9.1 97 318-428 154-258 (334)
275 COG1063 Tdh Threonine dehydrog 70.1 24 0.00052 36.7 9.0 93 328-432 171-274 (350)
276 KOG2798 Putative trehalase [Ca 70.1 8.7 0.00019 40.5 5.6 65 386-453 258-336 (369)
277 KOG2198 tRNA cytosine-5-methyl 70.1 29 0.00062 37.2 9.5 127 318-446 150-316 (375)
278 TIGR02825 B4_12hDH leukotriene 69.7 36 0.00079 34.0 10.0 96 317-427 132-237 (325)
279 cd08245 CAD Cinnamyl alcohol d 69.1 36 0.00078 33.8 9.7 94 320-427 159-256 (330)
280 PRK01747 mnmC bifunctional tRN 69.0 14 0.00031 41.6 7.6 58 385-449 164-222 (662)
281 PF03059 NAS: Nicotianamine sy 68.9 16 0.00035 37.5 7.3 99 326-426 121-229 (276)
282 PF11899 DUF3419: Protein of u 68.4 5 0.00011 42.9 3.6 45 383-428 291-335 (380)
283 PLN03154 putative allyl alcoho 67.2 43 0.00094 34.4 10.1 95 319-427 154-258 (348)
284 KOG2730 Methylase [General fun 66.8 6.6 0.00014 39.6 3.8 89 328-422 97-197 (263)
285 cd05188 MDR Medium chain reduc 66.1 46 0.001 31.3 9.4 89 327-427 136-232 (271)
286 cd08232 idonate-5-DH L-idonate 66.0 32 0.00069 34.4 8.7 89 327-427 167-262 (339)
287 PF00145 DNA_methylase: C-5 cy 65.9 64 0.0014 31.9 10.8 124 328-457 2-144 (335)
288 PF14314 Methyltrans_Mon: Viru 65.8 43 0.00093 38.6 10.4 166 308-476 305-503 (675)
289 TIGR03451 mycoS_dep_FDH mycoth 65.3 40 0.00088 34.4 9.4 95 320-429 173-278 (358)
290 PHA01634 hypothetical protein 65.1 17 0.00036 34.0 5.8 63 327-392 30-97 (156)
291 cd08295 double_bond_reductase_ 65.1 41 0.00089 33.9 9.3 94 318-427 146-251 (338)
292 PF01555 N6_N4_Mtase: DNA meth 64.9 3.6 7.9E-05 38.3 1.6 20 407-426 36-55 (231)
293 COG4262 Predicted spermidine s 64.0 15 0.00033 39.6 6.0 120 326-454 290-436 (508)
294 COG0604 Qor NADPH:quinone redu 63.8 38 0.00082 35.1 8.9 96 318-428 137-242 (326)
295 cd08294 leukotriene_B4_DH_like 62.7 61 0.0013 32.0 9.9 95 317-426 137-240 (329)
296 cd08261 Zn_ADH7 Alcohol dehydr 62.6 55 0.0012 32.8 9.7 96 318-427 154-258 (337)
297 PF04989 CmcI: Cephalosporin h 61.9 20 0.00043 35.4 6.1 99 321-426 31-146 (206)
298 cd08281 liver_ADH_like1 Zinc-d 59.8 48 0.001 34.2 8.9 95 320-428 188-291 (371)
299 PF07091 FmrO: Ribosomal RNA m 59.7 16 0.00035 37.1 5.2 87 312-399 93-183 (251)
300 TIGR03366 HpnZ_proposed putati 58.9 59 0.0013 32.1 9.0 89 328-429 123-220 (280)
301 PF06962 rRNA_methylase: Putat 58.4 21 0.00047 33.1 5.4 73 386-458 45-129 (140)
302 PRK09424 pntA NAD(P) transhydr 58.1 65 0.0014 35.9 9.9 94 327-426 166-284 (509)
303 TIGR00675 dcm DNA-methyltransf 57.4 2.1E+02 0.0045 29.5 13.0 136 329-470 1-159 (315)
304 PLN02586 probable cinnamyl alc 56.2 46 0.001 34.4 8.0 86 328-427 186-278 (360)
305 cd08237 ribitol-5-phosphate_DH 55.8 60 0.0013 33.1 8.7 93 321-428 161-257 (341)
306 cd08255 2-desacetyl-2-hydroxye 55.6 91 0.002 30.1 9.6 95 318-427 92-190 (277)
307 TIGR01202 bchC 2-desacetyl-2-h 54.9 49 0.0011 33.2 7.8 84 328-428 147-232 (308)
308 PRK15001 SAM-dependent 23S rib 54.8 48 0.0011 35.4 8.0 92 328-426 47-141 (378)
309 cd08293 PTGR2 Prostaglandin re 54.1 76 0.0017 31.8 9.0 95 319-427 148-254 (345)
310 PRK00050 16S rRNA m(4)C1402 me 53.4 25 0.00055 36.4 5.5 31 403-433 212-242 (296)
311 PLN02827 Alcohol dehydrogenase 52.7 83 0.0018 32.8 9.3 93 319-427 189-295 (378)
312 cd08239 THR_DH_like L-threonin 50.7 1.2E+02 0.0026 30.4 9.8 96 319-428 159-263 (339)
313 cd05278 FDH_like Formaldehyde 50.7 89 0.0019 31.2 8.9 92 321-427 165-267 (347)
314 COG0270 Dcm Site-specific DNA 50.7 1.8E+02 0.0039 30.1 11.3 124 327-455 4-147 (328)
315 PF01861 DUF43: Protein of unk 50.6 92 0.002 31.7 8.8 119 326-448 45-172 (243)
316 cd05285 sorbitol_DH Sorbitol d 49.9 91 0.002 31.4 8.8 96 318-427 157-265 (343)
317 TIGR03201 dearomat_had 6-hydro 49.4 1.2E+02 0.0025 31.0 9.6 96 320-429 163-274 (349)
318 KOG2539 Mitochondrial/chloropl 48.5 66 0.0014 35.6 7.9 98 327-426 202-314 (491)
319 cd08298 CAD2 Cinnamyl alcohol 47.1 1.7E+02 0.0038 28.9 10.3 93 318-427 162-256 (329)
320 cd08285 NADP_ADH NADP(H)-depen 46.5 1.6E+02 0.0034 29.8 10.0 95 320-429 163-268 (351)
321 PF01795 Methyltransf_5: MraW 45.9 16 0.00034 38.3 2.6 70 406-478 220-289 (310)
322 COG0541 Ffh Signal recognition 45.8 1.9E+02 0.0042 31.9 10.8 122 326-448 100-242 (451)
323 PRK10309 galactitol-1-phosphat 45.6 1.5E+02 0.0033 29.9 9.8 22 408-429 241-262 (347)
324 cd00401 AdoHcyase S-adenosyl-L 44.0 1.2E+02 0.0027 32.9 9.1 86 327-429 203-291 (413)
325 cd08236 sugar_DH NAD(P)-depend 43.9 2E+02 0.0044 28.7 10.2 95 319-427 155-258 (343)
326 PF01555 N6_N4_Mtase: DNA meth 43.7 34 0.00075 31.8 4.4 41 314-356 180-222 (231)
327 PF14740 DUF4471: Domain of un 42.6 34 0.00074 35.5 4.4 59 384-450 219-285 (289)
328 TIGR02818 adh_III_F_hyde S-(hy 41.7 1.9E+02 0.0041 29.8 9.9 97 319-429 181-289 (368)
329 PLN02740 Alcohol dehydrogenase 41.6 1.6E+02 0.0036 30.5 9.4 97 319-429 194-302 (381)
330 cd05281 TDH Threonine dehydrog 41.5 1.4E+02 0.0031 29.9 8.8 88 328-427 166-262 (341)
331 TIGR00692 tdh L-threonine 3-de 41.1 1.9E+02 0.0041 29.1 9.6 35 385-428 228-262 (340)
332 cd08242 MDR_like Medium chain 40.5 2.7E+02 0.0059 27.5 10.5 92 319-426 151-244 (319)
333 cd08277 liver_alcohol_DH_like 40.0 2.2E+02 0.0048 29.2 10.0 95 320-428 181-287 (365)
334 cd08243 quinone_oxidoreductase 39.9 2.5E+02 0.0054 27.2 10.0 90 320-427 139-238 (320)
335 cd08274 MDR9 Medium chain dehy 39.6 2.5E+02 0.0055 28.0 10.2 91 320-426 174-272 (350)
336 TIGR00006 S-adenosyl-methyltra 38.3 29 0.00062 36.2 3.2 30 404-433 217-246 (305)
337 cd08231 MDR_TM0436_like Hypoth 36.1 3.3E+02 0.0072 27.5 10.5 19 409-427 262-280 (361)
338 cd08263 Zn_ADH10 Alcohol dehyd 36.0 2.1E+02 0.0045 29.2 9.0 34 385-427 254-287 (367)
339 PF02254 TrkA_N: TrkA-N domain 34.5 1.3E+02 0.0028 25.3 6.2 98 334-448 4-111 (116)
340 cd08278 benzyl_alcohol_DH Benz 33.9 2.3E+02 0.0051 29.0 9.1 92 320-427 183-285 (365)
341 cd08279 Zn_ADH_class_III Class 33.7 2.8E+02 0.0062 28.3 9.6 93 320-427 179-282 (363)
342 COG0275 Predicted S-adenosylme 33.4 44 0.00095 35.1 3.5 31 404-434 221-251 (314)
343 cd08241 QOR1 Quinone oxidoredu 32.5 4.4E+02 0.0095 25.3 10.3 92 320-427 136-238 (323)
344 KOG2920 Predicted methyltransf 32.4 37 0.00079 35.2 2.8 38 387-426 196-233 (282)
345 cd08300 alcohol_DH_class_III c 32.2 3.5E+02 0.0076 27.7 10.0 97 319-429 182-290 (368)
346 PRK11524 putative methyltransf 31.7 72 0.0016 32.2 4.8 44 313-356 196-239 (284)
347 PRK07417 arogenate dehydrogena 31.3 1.8E+02 0.0039 29.1 7.5 82 329-422 3-86 (279)
348 KOG0822 Protein kinase inhibit 31.3 1.4E+02 0.0031 33.9 7.1 100 326-426 368-477 (649)
349 PF03721 UDPG_MGDP_dh_N: UDP-g 31.2 2.7E+02 0.0058 26.5 8.3 115 329-446 3-139 (185)
350 COG0116 Predicted N6-adenine-s 30.5 52 0.0011 35.4 3.6 96 327-426 193-343 (381)
351 TIGR00872 gnd_rel 6-phosphoglu 30.1 2.2E+02 0.0047 28.9 7.9 109 329-448 3-113 (298)
352 PRK13699 putative methylase; P 29.9 95 0.002 30.6 5.2 41 314-356 152-194 (227)
353 PF05430 Methyltransf_30: S-ad 29.9 1.5E+02 0.0032 26.8 6.0 58 386-450 49-107 (124)
354 COG2384 Predicted SAM-dependen 29.9 6E+02 0.013 25.7 11.4 114 328-450 19-139 (226)
355 PLN02514 cinnamyl-alcohol dehy 29.8 2.1E+02 0.0045 29.4 7.9 89 328-427 183-275 (357)
356 PLN02178 cinnamyl-alcohol dehy 29.6 1.8E+02 0.0039 30.4 7.5 86 328-427 181-273 (375)
357 KOG2651 rRNA adenine N-6-methy 29.2 58 0.0013 35.5 3.7 32 325-356 153-185 (476)
358 TIGR00959 ffh signal recogniti 29.2 7.9E+02 0.017 26.9 12.6 67 385-452 180-246 (428)
359 COG0863 DNA modification methy 29.0 1.5E+02 0.0032 29.3 6.4 42 407-451 79-120 (302)
360 cd08292 ETR_like_2 2-enoyl thi 28.9 2.6E+02 0.0057 27.4 8.2 93 319-427 135-238 (324)
361 PRK10083 putative oxidoreducta 28.1 3.7E+02 0.0079 26.8 9.1 19 409-427 241-259 (339)
362 KOG1562 Spermidine synthase [A 27.9 86 0.0019 33.1 4.5 99 325-426 121-235 (337)
363 PF03446 NAD_binding_2: NAD bi 26.9 2E+02 0.0043 26.4 6.4 110 329-451 4-117 (163)
364 cd08301 alcohol_DH_plants Plan 26.5 4.8E+02 0.01 26.6 9.9 97 319-429 183-291 (369)
365 cd08258 Zn_ADH4 Alcohol dehydr 26.4 5.8E+02 0.012 25.4 10.2 23 408-430 245-267 (306)
366 PRK10867 signal recognition pa 26.1 7.7E+02 0.017 27.0 11.6 43 385-428 181-223 (433)
367 TIGR00027 mthyl_TIGR00027 meth 25.8 3.6E+02 0.0078 27.1 8.6 102 326-428 82-198 (260)
368 cd08233 butanediol_DH_like (2R 25.3 5.8E+02 0.013 25.7 10.1 20 409-428 254-273 (351)
369 PF01558 POR: Pyruvate ferredo 25.1 2.8E+02 0.006 25.5 7.1 71 339-427 12-86 (173)
370 KOG1501 Arginine N-methyltrans 25.1 69 0.0015 35.6 3.4 24 327-350 68-91 (636)
371 TIGR00064 ftsY signal recognit 24.6 7.4E+02 0.016 25.0 10.6 65 385-450 152-222 (272)
372 TIGR02049 gshA_ferroox glutama 24.1 83 0.0018 34.0 3.7 47 37-86 204-252 (403)
373 COG0373 HemA Glutamyl-tRNA red 24.0 1.9E+02 0.0041 31.6 6.5 83 326-411 178-263 (414)
374 cd08246 crotonyl_coA_red croto 24.0 5.4E+02 0.012 26.6 9.7 19 409-427 297-315 (393)
375 PF02636 Methyltransf_28: Puta 23.6 64 0.0014 31.9 2.7 19 327-345 20-38 (252)
376 cd08289 MDR_yhfp_like Yhfp put 23.1 3.8E+02 0.0083 26.3 8.1 87 327-428 148-244 (326)
377 PRK11064 wecC UDP-N-acetyl-D-m 22.6 5.5E+02 0.012 27.5 9.7 97 328-427 5-119 (415)
378 TIGR02817 adh_fam_1 zinc-bindi 22.6 7.4E+02 0.016 24.5 10.1 87 327-425 150-245 (336)
379 cd08240 6_hydroxyhexanoate_dh_ 22.6 5.5E+02 0.012 25.8 9.3 20 408-427 255-274 (350)
380 PRK14532 adenylate kinase; Pro 22.5 3.4E+02 0.0074 25.0 7.2 39 409-447 67-105 (188)
381 TIGR00006 S-adenosyl-methyltra 22.3 1.9E+02 0.0041 30.2 5.9 36 319-356 16-53 (305)
382 PF12692 Methyltransf_17: S-ad 22.1 25 0.00055 33.4 -0.4 94 328-425 31-132 (160)
383 cd08266 Zn_ADH_like1 Alcohol d 22.0 4.6E+02 0.01 25.5 8.4 93 319-426 162-264 (342)
384 PF08886 GshA: Glutamate-cyste 21.8 1.1E+02 0.0023 33.3 4.0 48 36-86 206-255 (404)
385 PRK05476 S-adenosyl-L-homocyst 21.7 3.4E+02 0.0074 29.7 7.9 94 327-437 213-309 (425)
386 TIGR02819 fdhA_non_GSH formald 21.5 4.4E+02 0.0095 27.8 8.6 22 408-429 280-301 (393)
387 cd08297 CAD3 Cinnamyl alcohol 21.5 8.1E+02 0.018 24.3 10.7 93 320-427 162-265 (341)
388 PLN02494 adenosylhomocysteinas 21.2 3.1E+02 0.0066 30.6 7.5 97 327-439 255-353 (477)
389 PRK05396 tdh L-threonine 3-deh 21.1 5.4E+02 0.012 25.8 8.8 35 385-428 230-264 (341)
390 TIGR00561 pntA NAD(P) transhyd 20.8 2.8E+02 0.006 31.1 7.1 93 327-424 165-281 (511)
391 TIGR00518 alaDH alanine dehydr 20.5 1.8E+02 0.0039 30.8 5.4 94 327-425 168-265 (370)
392 PRK09489 rsmC 16S ribosomal RN 20.2 4.3E+02 0.0093 27.8 8.1 92 327-428 21-113 (342)
393 COG1109 {ManB} Phosphomannomut 20.2 1.1E+03 0.024 25.5 12.5 44 311-354 159-209 (464)
394 KOG4058 Uncharacterized conser 20.0 71 0.0015 30.7 2.0 43 314-356 60-104 (199)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.8e-48 Score=409.85 Aligned_cols=237 Identities=29% Similarity=0.467 Sum_probs=199.4
Q ss_pred CCCCCCCCCChHHHHHh--------hhccCCCC-CCCCCccccCCCCCCCCCcCCccCCCCCCCCccccccccccccccc
Q 046488 201 DYDVGEICNDDWKLAQK--------LMVHGCDP-LPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCL 271 (480)
Q Consensus 201 ~Y~~~~~C~dd~~~~~~--------l~~~~c~p-~pr~rCl~~~P~~y~~P~pwp~sl~~~P~~~~~~W~~y~ck~~~cl 271 (480)
||+ ||.|+.+..+. ..+++||| .++++||+|+|++|+.|+|| |.|||++|
T Consensus 1 dy~---PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~W-------P~SRd~iW----------- 59 (506)
T PF03141_consen 1 DYI---PCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPW-------PKSRDYIW----------- 59 (506)
T ss_pred CCc---CCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCC-------Ccccceee-----------
Confidence 688 99999876444 12367887 68999999999999999999 88999999
Q ss_pred cCCCCCCCccccccccccccccccccccccc----CCCC---CCchhhhhHHH---hcCC--CCCCCCeEEEECCCCcHH
Q 046488 272 ASNATHKGFFKCADCFNLTDHEMPRWIKNVD----IDPI---TNLTADFLIPE---VLDI--KPGEIRIGLDFSIGTGTF 339 (480)
Q Consensus 272 ~~n~~~~~~~~c~~cfdl~~k~~q~W~~~~g----f~~~---~~~~ad~~I~~---vL~l--~~g~iR~VLDVGCGtG~f 339 (480)
++|++|+.+ .+.+..|+|++.+| |||| |.+|++.||++ ++++ ..|.+|++||||||+|+|
T Consensus 60 ~~Nvph~~L--------~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF 131 (506)
T PF03141_consen 60 YANVPHTKL--------AEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASF 131 (506)
T ss_pred ecccCchHH--------hhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehh
Confidence 579999974 44599999999988 8865 88999999874 6666 668899999999999999
Q ss_pred HHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeec--ccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcc
Q 046488 340 AARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITI--NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVL 417 (480)
Q Consensus 340 Aa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~--ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVL 417 (480)
|++|.++||.+|++++++.++++.|+|+++++|++++. .++||||+++||+|||++|+.+|...+ +.+|.|++|||
T Consensus 132 ~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvL 209 (506)
T PF03141_consen 132 GAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVL 209 (506)
T ss_pred HHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc--cceeehhhhhh
Confidence 99999999999999999999999999999999999877 799999999999999999999998776 67999999999
Q ss_pred cCCcEEEEeecc---CChhhHH-HHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEeCCCC
Q 046488 418 RPGGLLWIDSFF---CAKEDMN-DYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRP 477 (480)
Q Consensus 418 KPGG~fiI~~f~---~~~edL~-~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qKP~~~ 477 (480)
||||+||++.-- ...++.. ++..+-+- .+.+||+...+.++ +||||||.++
T Consensus 210 RpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l--~~~lCW~~va~~~~-------~aIwqKp~~~ 264 (506)
T PF03141_consen 210 RPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL--AKSLCWKKVAEKGD-------TAIWQKPTNN 264 (506)
T ss_pred ccCceEEecCCcccccchHHHHHHHHHHHHH--HHHHHHHHheeeCC-------EEEEeccCCc
Confidence 999999998532 3333332 23222222 35577877777665 9999999986
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.95 E-value=1.4e-28 Score=259.86 Aligned_cols=242 Identities=21% Similarity=0.315 Sum_probs=189.4
Q ss_pred cccchhhhcccchHhhhhhcCCCCCCCCCChHHHHHhhhccCCCCCCCCCccccCCCC-----CCCCCcCCccCCCCCCC
Q 046488 181 TFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQL-----YSRPFYINESMWKLPDN 255 (480)
Q Consensus 181 ~~~~~g~~C~~~~~~l~~y~~Y~~~~~C~dd~~~~~~l~~~~c~p~pr~rCl~~~P~~-----y~~P~pwp~sl~~~P~~ 255 (480)
-++|+.|+|+..+. ..+....|.++.+....|+ . |.+.|+++.|.. ...|.+||+||.+.|++
T Consensus 258 wqKp~~~~Cy~~r~------~~~~pplC~~~~dpd~aWY-~-----~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~r 325 (506)
T PF03141_consen 258 WQKPTNNSCYQKRK------PGKSPPLCDSSDDPDAAWY-V-----PLEACITPLPEVSSEIAGGWLPKWPERLNAVPPR 325 (506)
T ss_pred EeccCCchhhhhcc------CCCCCCCCCCCCCCcchhh-c-----chhhhcCcCCcccccccccCCCCChhhhccCchh
Confidence 48999999998775 5677789996555666777 3 688999999984 78999999999999987
Q ss_pred CccccccccccccccccCCCCCCCcccccccccccccccccccccccCCCCCCchhhhhHHHhcC--CCCCCCCeEEEEC
Q 046488 256 RNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLD--IKPGEIRIGLDFS 333 (480)
Q Consensus 256 ~~~~W~~y~ck~~~cl~~n~~~~~~~~c~~cfdl~~k~~q~W~~~~gf~~~~~~~ad~~I~~vL~--l~~g~iR~VLDVG 333 (480)
....= +.... ++-| .++++.|.... ++| ..++. +..+.+|+|||++
T Consensus 326 l~~~~-----------~~g~~-------~e~F---~~Dt~~Wk~~V----------~~Y-~~l~~~~i~~~~iRNVMDMn 373 (506)
T PF03141_consen 326 LSSGS-----------IPGIS-------PEEF---KEDTKHWKKRV----------SHY-KKLLGLAIKWGRIRNVMDMN 373 (506)
T ss_pred hhcCC-----------cCCCC-------HHHH---HHHHHHHHHHH----------HHH-HHhhcccccccceeeeeeec
Confidence 64321 00111 1112 48999998875 223 23444 7889999999999
Q ss_pred CCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcHHHHHHHH
Q 046488 334 IGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDW 413 (480)
Q Consensus 334 CGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI 413 (480)
+|+|+||++|.+++|+||++.+...+.++..|++||+++.+++|+|++|+++++||+||+.++|..+.+++.++.+|.||
T Consensus 374 Ag~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEm 453 (506)
T PF03141_consen 374 AGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEM 453 (506)
T ss_pred ccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHh
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEe
Q 046488 414 DRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEK 473 (480)
Q Consensus 414 ~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qK 473 (480)
+|+|||||++||.+ ..+-+.++..+++++.|+...+..... ....|.++. .||
T Consensus 454 DRILRP~G~~iiRD---~~~vl~~v~~i~~~lrW~~~~~d~e~g--~~~~EkiL~--~~K 506 (506)
T PF03141_consen 454 DRILRPGGWVIIRD---TVDVLEKVKKIAKSLRWEVRIHDTEDG--PDGPEKILI--CQK 506 (506)
T ss_pred HhhcCCCceEEEec---cHHHHHHHHHHHHhCcceEEEEecCCC--CCCCceEEE--EEC
Confidence 99999999999932 222345667777776555443333211 123577664 454
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=1.4e-16 Score=156.90 Aligned_cols=97 Identities=29% Similarity=0.350 Sum_probs=78.0
Q ss_pred CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHh----C--CCCeeeecccCCCCCCCccchheeccccc
Q 046488 327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALR----G--LVPLYITINQRVPFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~r----g--lip~~~~~ae~LPFpd~SFDlV~ss~vL~ 398 (480)
.+|||||||||.+|..+++.. ..++++|++. .|+....++ + .+.+++++++.|||+|+|||+|.+++.|+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~--~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVGTGEVVGLDISE--SMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcCCceEEEEECCH--HHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 489999999999999999873 5677777652 444432222 1 14467889999999999999999999999
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
++.+. +.+|+|++|||||||++++.++
T Consensus 131 nv~d~---~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 131 NVTDI---DKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred cCCCH---HHHHHHHHHhhcCCeEEEEEEc
Confidence 99877 4699999999999999998743
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=3.4e-16 Score=127.03 Aligned_cols=91 Identities=31% Similarity=0.383 Sum_probs=70.4
Q ss_pred EEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhC---CCCeeeecccCCCCCCCccchheecccccCccChhc
Q 046488 330 LDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVL 405 (480)
Q Consensus 330 LDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~ 405 (480)
||+|||+|.++..|+++ +..+++++++. ++.....++. .+.......+.+||++++||+|++..+++|+.+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~-- 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP-- 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCH--
Confidence 89999999999999999 88999988763 3333333222 2335667799999999999999999999988444
Q ss_pred HHHHHHHHHhcccCCcEEEE
Q 046488 406 LDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 406 l~~~L~EI~RVLKPGG~fiI 425 (480)
..++.|+.|+|||||+++|
T Consensus 77 -~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 -EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -HHHHHHHHHHEEEEEEEEE
T ss_pred -HHHHHHHHHHcCcCeEEeC
Confidence 6799999999999999886
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.63 E-value=7.3e-16 Score=151.01 Aligned_cols=110 Identities=27% Similarity=0.385 Sum_probs=73.2
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHH----HHhC--CCCeeeecccCCCCCCCc
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMI----ALRG--LVPLYITINQRVPFFDNT 387 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~i----A~rg--lip~~~~~ae~LPFpd~S 387 (480)
+.+...++. +|||+|||||.++..++++ +..++++|++ ..++... ...+ .+.+..++++.|||+|++
T Consensus 41 ~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s--~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s 116 (233)
T PF01209_consen 41 KLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDIS--PGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS 116 (233)
T ss_dssp HHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES---HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-
T ss_pred hccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCC--HHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc
Confidence 344555554 8999999999999999875 2467777754 3444332 2222 245667889999999999
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChh
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE 433 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e 433 (480)
||+|++++.+++.++. ..++.|++|||||||+++|.+|..+..
T Consensus 117 fD~v~~~fglrn~~d~---~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 117 FDAVTCSFGLRNFPDR---ERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp EEEEEEES-GGG-SSH---HHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred eeEEEHHhhHHhhCCH---HHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 9999999999999876 469999999999999999987766543
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.61 E-value=7.2e-15 Score=145.55 Aligned_cols=105 Identities=23% Similarity=0.162 Sum_probs=79.8
Q ss_pred cCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHHHHHHh------C---CCCeeeecccCCCCCCC
Q 046488 319 LDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNEMIALR------G---LVPLYITINQRVPFFDN 386 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~~iA~r------g---lip~~~~~ae~LPFpd~ 386 (480)
+.+.++ .+|||+|||||.++..++++ + ..++++|++. .+...+.++ + .+.+..++++.+||+++
T Consensus 69 ~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~--~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~ 144 (261)
T PLN02233 69 SGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS--EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC 144 (261)
T ss_pred hCCCCC--CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence 345554 48999999999999998875 3 4678877652 343332211 1 23455677899999999
Q ss_pred ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488 387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC 430 (480)
Q Consensus 387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~ 430 (480)
+||+|+++++++++.++ ..++.|+.|+|||||++++.+|..
T Consensus 145 sfD~V~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 145 YFDAITMGYGLRNVVDR---LKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CEeEEEEecccccCCCH---HHHHHHHHHHcCcCcEEEEEECCC
Confidence 99999999999998776 469999999999999999886543
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.53 E-value=8e-14 Score=143.11 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=92.1
Q ss_pred CCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccC
Q 046488 326 IRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDG 399 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h 399 (480)
..+|||||||+|.++..|+++ +..+++++++.... +....+.++. +.+..+++..+||++++||+|++..+++|
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h 198 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEH 198 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhc
Confidence 358999999999999999986 78888888763211 1112222332 34556678889999999999999999999
Q ss_pred ccChhcHHHHHHHHHhcccCCcEEEEeeccCC----h------h------------------hHHHHHHHHHHcCceeeE
Q 046488 400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA----K------E------------------DMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~----~------e------------------dL~~~~~~l~~lGfkkl~ 451 (480)
+.+. ..++.|+.|+|||||+|++..|... . . ..+.+.++++..||..+.
T Consensus 199 ~~d~---~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~ 275 (340)
T PLN02244 199 MPDK---RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIK 275 (340)
T ss_pred cCCH---HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeE
Confidence 9876 4699999999999999999765321 0 0 123566788999998765
Q ss_pred E
Q 046488 452 W 452 (480)
Q Consensus 452 W 452 (480)
.
T Consensus 276 ~ 276 (340)
T PLN02244 276 T 276 (340)
T ss_pred e
Confidence 4
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.48 E-value=3.3e-13 Score=133.85 Aligned_cols=131 Identities=17% Similarity=0.152 Sum_probs=94.2
Q ss_pred hcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhC-----CCCeeeecccCCCCCCCccchh
Q 046488 318 VLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRG-----LVPLYITINQRVPFFDNTLDLI 391 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rg-----lip~~~~~ae~LPFpd~SFDlV 391 (480)
.+.+.++. +|||||||+|..+..+++. +..+++++++. .+ ...+.++ .+.+...++..+||++++||+|
T Consensus 47 ~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~giD~s~--~~-~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 47 DIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHGVDICE--KM-VNIAKLRNSDKNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred hCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEEEECCH--HH-HHHHHHHcCcCCceEEEECCcccCCCCCCCeEEE
Confidence 34555553 8999999999999999764 67888888652 22 2223222 2344456677889999999999
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-----h--------------hHHHHHHHHHHcCceeeEE
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-----E--------------DMNDYLEVFKMLKYKKHKW 452 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-----e--------------dL~~~~~~l~~lGfkkl~W 452 (480)
++..++.|+...+ ...++.+++|+|||||+|++.++.... + ....|.++++..||..+.+
T Consensus 122 ~s~~~l~h~~~~d-~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 200 (263)
T PTZ00098 122 YSRDAILHLSYAD-KKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA 200 (263)
T ss_pred EEhhhHHhCCHHH-HHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence 9988888876322 267999999999999999998653321 0 1245778999999998776
Q ss_pred EE
Q 046488 453 VV 454 (480)
Q Consensus 453 ~~ 454 (480)
.-
T Consensus 201 ~d 202 (263)
T PTZ00098 201 KD 202 (263)
T ss_pred Ee
Confidence 43
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.48 E-value=3.5e-13 Score=120.02 Aligned_cols=126 Identities=24% Similarity=0.302 Sum_probs=89.9
Q ss_pred hHHHhcC-CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchhe
Q 046488 314 LIPEVLD-IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIH 392 (480)
Q Consensus 314 ~I~~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ 392 (480)
.+..+++ ..+ ..+|||+|||+|.++..|++.|..+++++++. .+... .............++++++||+|+
T Consensus 12 ~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~--~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 12 LLERLLPRLKP--GKRVLDIGCGTGSFLRALAKRGFEVTGVDISP--QMIEK----RNVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp HHHHHHTCTTT--TSEEEEESSTTSHHHHHHHHTTSEEEEEESSH--HHHHH----TTSEEEEEECHTHHCHSSSEEEEE
T ss_pred HHHHHhcccCC--CCEEEEEcCCCCHHHHHHHHhCCEEEEEECCH--HHHhh----hhhhhhhhhhhhhhccccchhhHh
Confidence 4445554 333 34899999999999999999999999998752 22222 222222222446667899999999
Q ss_pred ecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------------h--------hHHHHHHHHHHcCceee
Q 046488 393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------------E--------DMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------e--------dL~~~~~~l~~lGfkkl 450 (480)
|..+|+|+.++ ..+|.++.|+|||||++++....... . ..+.+..++++.||+.+
T Consensus 84 ~~~~l~~~~d~---~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 84 CNDVLEHLPDP---EEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp EESSGGGSSHH---HHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hHHHHhhcccH---HHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 99999999865 57999999999999999998544310 0 02456778888887654
No 10
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.46 E-value=3.3e-13 Score=133.61 Aligned_cols=107 Identities=24% Similarity=0.224 Sum_probs=79.6
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhhC--C------CEEEEEecCCChhHHH---HHHHh-CC-----CCeeeecccCCCC
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMREF--N------VTLVSAIINLGAPFNE---MIALR-GL-----VPLYITINQRVPF 383 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae~--g------V~Vv~vd~d~~~~~~~---~iA~r-gl-----ip~~~~~ae~LPF 383 (480)
+.++...++|||+||||..|..+.++ . -.|+..|++ ++++. +.|++ ++ +....+++|.|||
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Din--p~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF 173 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDIN--PHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF 173 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCC--HHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC
Confidence 55655678999999999999988765 1 344554444 23333 22222 22 2234567999999
Q ss_pred CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh
Q 046488 384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK 432 (480)
Q Consensus 384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~ 432 (480)
+|++||+.+.++.+.+|.+.+ ++|+|++|||||||+|.+..|-...
T Consensus 174 dd~s~D~yTiafGIRN~th~~---k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNVTHIQ---KALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred CCCcceeEEEecceecCCCHH---HHHHHHHHhcCCCcEEEEEEccccc
Confidence 999999999999999999884 6999999999999999988665443
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.45 E-value=4.3e-13 Score=137.44 Aligned_cols=119 Identities=8% Similarity=0.035 Sum_probs=90.3
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-----C---CCCeeeecccCCCCCCCccchheeccccc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-----G---LVPLYITINQRVPFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-----g---lip~~~~~ae~LPFpd~SFDlV~ss~vL~ 398 (480)
.+|||||||+|.++..|++.|..++++|++. .+.. .|.+ + .+.+..+.++.+|+++++||+|+|..+++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~--~~i~-~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVD--KNVK-IARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCH--HHHH-HHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4899999999999999999888998888652 2222 2221 1 23455566788999999999999999999
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------------------------hhHHHHHHHHHHcCceeeE
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------------------------EDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------------------------edL~~~~~~l~~lGfkkl~ 451 (480)
|+.++. .++.++.|+|||||.+++..+.... -..+++..++++.||+...
T Consensus 210 Hv~d~~---~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 210 HVANPA---EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred hcCCHH---HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 998874 6999999999999999987432210 0124677888999987543
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=4.7e-13 Score=131.13 Aligned_cols=122 Identities=15% Similarity=0.118 Sum_probs=91.4
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChh
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFV 404 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~ 404 (480)
.+|||+|||+|.++..|+++ +..+++++++ +.+...|.+..+.+..++++.++ ++++||+|+++.+++|+.++
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s---~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~- 105 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWPGAVIEALDSS---PEMVAAARERGVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEH- 105 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC---HHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEEehhhhhCCCH-
Confidence 58999999999999999987 6688888865 33344455556777777777775 67899999999999887765
Q ss_pred cHHHHHHHHHhcccCCcEEEEeecc---CC-------------------h---------hhHHHHHHHHHHcCceeeEEE
Q 046488 405 LLDFILYDWDRVLRPGGLLWIDSFF---CA-------------------K---------EDMNDYLEVFKMLKYKKHKWV 453 (480)
Q Consensus 405 ~l~~~L~EI~RVLKPGG~fiI~~f~---~~-------------------~---------edL~~~~~~l~~lGfkkl~W~ 453 (480)
..++.+++|+|||||++++..+. .. . ...+.+.++++..||....|.
T Consensus 106 --~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 106 --ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred --HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEe
Confidence 46999999999999999885210 00 0 012457788999999866666
Q ss_pred Ee
Q 046488 454 VV 455 (480)
Q Consensus 454 ~~ 455 (480)
..
T Consensus 184 ~~ 185 (255)
T PRK14103 184 TT 185 (255)
T ss_pred ee
Confidence 53
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.43 E-value=2e-12 Score=123.88 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=75.9
Q ss_pred hcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCcc
Q 046488 318 VLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTL 388 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SF 388 (480)
.+.+.++ .+|||+|||+|.++..+++. +..+++++++. .+.. ..+..+. +....++++.+|+++++|
T Consensus 40 ~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 40 RMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE--NMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence 3445555 48999999999999999875 35788888652 2222 1222222 334556677889999999
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+|++..+++++.+. ..++.|+.|+|||||++++.+
T Consensus 116 D~V~~~~~l~~~~~~---~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 116 DYVTIGFGLRNVPDY---MQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cEEEEecccccCCCH---HHHHHHHHHHcCcCeEEEEEE
Confidence 999999988877665 469999999999999998754
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.43 E-value=8.1e-13 Score=135.11 Aligned_cols=122 Identities=17% Similarity=0.094 Sum_probs=90.0
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHH--HHHh-----CCCCeeeecccCCCCCCCccchheeccccc
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEM--IALR-----GLVPLYITINQRVPFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~--iA~r-----glip~~~~~ae~LPFpd~SFDlV~ss~vL~ 398 (480)
++|||||||+|.++..|++.|. .|++++++. .+..+ ...+ ..+.+.....+.+|+ +++||+|+|..+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~--~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ--LFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 5899999999999999998864 588888653 23222 1111 123344456788998 89999999999999
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEeeccCC---------h------------hhHHHHHHHHHHcCceeeEEEE
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA---------K------------EDMNDYLEVFKMLKYKKHKWVV 454 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~---------~------------edL~~~~~~l~~lGfkkl~W~~ 454 (480)
|+.++ ..+|.+++|+|||||.+++..+... . .....+...+++.||+.+....
T Consensus 201 H~~dp---~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 201 HRRSP---LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred ccCCH---HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 98776 4699999999999999998643211 0 0234578899999999887654
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=1.2e-12 Score=128.50 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=88.5
Q ss_pred CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhCC---CCeeeecccCC-CCCCCccchheecccc
Q 046488 326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRGL---VPLYITINQRV-PFFDNTLDLIHTTRFL 397 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rgl---ip~~~~~ae~L-PFpd~SFDlV~ss~vL 397 (480)
..+|||+|||+|.++..|++.+..+++++++. .+... ....+. +.++.+..+.+ ++++++||+|++..++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~--~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSA--EMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 35899999999999999999998998888753 23222 222222 23445555555 4778999999999999
Q ss_pred cCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------------------------------hhHHHHHHHHHHcC
Q 046488 398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------------------------------EDMNDYLEVFKMLK 446 (480)
Q Consensus 398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------------------------edL~~~~~~l~~lG 446 (480)
+|+.++ ..++.++.|+|||||++++..+.... -..+.+..+++..|
T Consensus 123 ~~~~~~---~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aG 199 (255)
T PRK11036 123 EWVADP---KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAG 199 (255)
T ss_pred HhhCCH---HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCC
Confidence 888776 46999999999999999875322110 01245677888999
Q ss_pred ceeeEEE
Q 046488 447 YKKHKWV 453 (480)
Q Consensus 447 fkkl~W~ 453 (480)
|+.+.+.
T Consensus 200 f~~~~~~ 206 (255)
T PRK11036 200 WQIMGKT 206 (255)
T ss_pred CeEeeee
Confidence 9876544
No 16
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.42 E-value=1.5e-12 Score=126.77 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=77.0
Q ss_pred CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC--CCeeeecccCCCCCCCccchheecccccCccCh
Q 046488 326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF 403 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~ 403 (480)
..+|||+|||+|.++..+++.+..++++|++. .+.. .+.++. ..+..++.+.+|+++++||+|+++.++++..+.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~--~~l~-~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALDLSP--PMLA-QARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH--HHHH-HHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 45899999999999999998888888888652 3433 333332 345567788899999999999999888655554
Q ss_pred hcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 404 VLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 404 ~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
..++.|+.|+|||||++++..+.
T Consensus 120 ---~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 120 ---STALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ---HHHHHHHHHHcCCCeEEEEEeCC
Confidence 57999999999999999987543
No 17
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.41 E-value=2.2e-12 Score=131.95 Aligned_cols=126 Identities=16% Similarity=0.097 Sum_probs=88.8
Q ss_pred CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHH--HHh-----CCCCeeeecccCCCCCCCccchheecccc
Q 046488 326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMI--ALR-----GLVPLYITINQRVPFFDNTLDLIHTTRFL 397 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~i--A~r-----glip~~~~~ae~LPFpd~SFDlV~ss~vL 397 (480)
.++|||||||+|.++..++..|. .+++++++. .+..++ +++ ..+.......+.+|+. ++||+|+|+.++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~--~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV--LFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 35899999999999999988875 578887653 333322 111 1122223346777764 589999999999
Q ss_pred cCccChhcHHHHHHHHHhcccCCcEEEEeeccC---------Chh------------hHHHHHHHHHHcCceeeEEEEee
Q 046488 398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC---------AKE------------DMNDYLEVFKMLKYKKHKWVVVP 456 (480)
Q Consensus 398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~---------~~e------------dL~~~~~~l~~lGfkkl~W~~~~ 456 (480)
+|+.++. .+|.|++|+|||||.|++..+.- +.+ ....+...+++.||+.+......
T Consensus 199 ~H~~dp~---~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 199 YHRKSPL---EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred hccCCHH---HHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEecc
Confidence 9998774 59999999999999999863211 000 12456788999999998766544
Q ss_pred c
Q 046488 457 K 457 (480)
Q Consensus 457 k 457 (480)
.
T Consensus 276 ~ 276 (314)
T TIGR00452 276 K 276 (314)
T ss_pred C
Confidence 3
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.40 E-value=3e-12 Score=135.97 Aligned_cols=120 Identities=21% Similarity=0.264 Sum_probs=90.6
Q ss_pred CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHh---C---CCCeeeecccCCCCCCCccchheecccccC
Q 046488 327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALR---G---LVPLYITINQRVPFFDNTLDLIHTTRFLDG 399 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~r---g---lip~~~~~ae~LPFpd~SFDlV~ss~vL~h 399 (480)
.+|||||||+|.++..|++. +..+++++++. .+.. .|.+ + .+.+..++...+|+++++||+|+|..+++|
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~-~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMIS-FALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHH-HHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 48999999999999999875 77888888762 3322 2222 1 133445667778999999999999999999
Q ss_pred ccChhcHHHHHHHHHhcccCCcEEEEeeccCCh----h--------------hHHHHHHHHHHcCceeeEE
Q 046488 400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----E--------------DMNDYLEVFKMLKYKKHKW 452 (480)
Q Consensus 400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----e--------------dL~~~~~~l~~lGfkkl~W 452 (480)
+.++ ..++.|++|+|||||++++..+.... . ..+.+.++++..||..+.+
T Consensus 345 ~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 345 IQDK---PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred cCCH---HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 9876 46999999999999999988653321 0 1245778899999987754
No 19
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.39 E-value=6.8e-12 Score=129.63 Aligned_cols=145 Identities=15% Similarity=0.059 Sum_probs=100.8
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh---CCCCeeeecccCCCCCCCccchheecccccCcc
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR---GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r---glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~ 401 (480)
.+|||+|||+|.++..+++. +..++++|++. .+.....++ ..+.+..++.+.+|+++++||+|++..+++++.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 48999999999999888764 45677777542 333322221 235566677888999999999999999999988
Q ss_pred ChhcHHHHHHHHHhcccCCcEEEEeeccCC--------------hhhHHHHHHHHHHcCceeeEEEEeeccC-C----CC
Q 046488 402 DFVLLDFILYDWDRVLRPGGLLWIDSFFCA--------------KEDMNDYLEVFKMLKYKKHKWVVVPKRD-K----DD 462 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~--------------~edL~~~~~~l~~lGfkkl~W~~~~k~d-~----~~ 462 (480)
+.. .+++|+.|+|||||++++...... -...+++.+++++.||+.+.+....... + ..
T Consensus 193 d~~---~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~ 269 (340)
T PLN02490 193 DPQ---RGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHG 269 (340)
T ss_pred CHH---HHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhcccccccc
Confidence 764 699999999999999987531100 0123567889999999988876532211 0 11
Q ss_pred cceeEEEEEEeCCC
Q 046488 463 REVFFSAVLEKPPR 476 (480)
Q Consensus 463 ~E~~lsav~qKP~~ 476 (480)
-.+-.+...+||.+
T Consensus 270 ~~~~~~v~~~k~~~ 283 (340)
T PLN02490 270 LIMGCSVTGVKPAS 283 (340)
T ss_pred ceeeEEEEEecccc
Confidence 12334566788876
No 20
>PRK05785 hypothetical protein; Provisional
Probab=99.37 E-value=1.8e-12 Score=126.03 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=71.3
Q ss_pred CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhc
Q 046488 327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVL 405 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~ 405 (480)
.+|||+|||||.++..+++. +..++++|++ ..+.... .+. .....++++.+||++++||+|+++++++|+.+.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S--~~Ml~~a-~~~-~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~-- 126 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVALDYA--ENMLKMN-LVA-DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI-- 126 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEECCC--HHHHHHH-Hhc-cceEEechhhCCCCCCCEEEEEecChhhccCCH--
Confidence 48999999999999999987 6788888765 3454443 332 245667889999999999999999999888776
Q ss_pred HHHHHHHHHhcccCCc
Q 046488 406 LDFILYDWDRVLRPGG 421 (480)
Q Consensus 406 l~~~L~EI~RVLKPGG 421 (480)
+.++.|++|||||.+
T Consensus 127 -~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 127 -EKVIAEFTRVSRKQV 141 (226)
T ss_pred -HHHHHHHHHHhcCce
Confidence 469999999999953
No 21
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.36 E-value=7.3e-12 Score=123.55 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=88.3
Q ss_pred CCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHHHH----HHhCC--CCeeeecccCCCCCCCccch
Q 046488 320 DIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNEMI----ALRGL--VPLYITINQRVPFFDNTLDL 390 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~~i----A~rgl--ip~~~~~ae~LPFpd~SFDl 390 (480)
.+.++. +|||+|||+|..+..++.. + ..+++++++. .+.... +..+. +.+..+..+.+|+++++||+
T Consensus 74 ~~~~g~--~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~--~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 74 ELKPGE--TVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP--EMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred cCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH--HHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeE
Confidence 345554 8999999999987766653 3 3577777652 232221 11221 23345667889999999999
Q ss_pred heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh--------------------hhHHHHHHHHHHcCceee
Q 046488 391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK--------------------EDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------------------edL~~~~~~l~~lGfkkl 450 (480)
|++..+++++.+. ..++.|+.|+|||||+|++.++.... ...+++.++++..||..+
T Consensus 150 Vi~~~v~~~~~d~---~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 150 IISNCVINLSPDK---ERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred EEEcCcccCCCCH---HHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 9999888777665 46999999999999999997543221 112457788899999876
Q ss_pred EEE
Q 046488 451 KWV 453 (480)
Q Consensus 451 ~W~ 453 (480)
...
T Consensus 227 ~i~ 229 (272)
T PRK11873 227 TIQ 229 (272)
T ss_pred EEE
Confidence 543
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.34 E-value=5e-12 Score=120.09 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=75.5
Q ss_pred HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccch
Q 046488 315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLDL 390 (480)
Q Consensus 315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDl 390 (480)
+-+.++..++ .+|||+|||+|.++..|+++|..++++|++... .+...++..+. +.....+...+++ +++||+
T Consensus 22 l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~ 98 (197)
T PRK11207 22 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDF 98 (197)
T ss_pred HHHhcccCCC--CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCE
Confidence 3345554443 379999999999999999999888888875321 11112233332 2334445556666 467999
Q ss_pred heecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+|..+++++.+ ..+..++.++.|+|||||++++..
T Consensus 99 I~~~~~~~~~~~-~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 99 ILSTVVLMFLEA-KTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EEEecchhhCCH-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999998876653 334789999999999999976543
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.30 E-value=1.4e-11 Score=116.90 Aligned_cols=107 Identities=16% Similarity=0.046 Sum_probs=74.1
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH---HHHHhCCCC--eeeecccCCCCCCCccchh
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE---MIALRGLVP--LYITINQRVPFFDNTLDLI 391 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~---~iA~rglip--~~~~~ae~LPFpd~SFDlV 391 (480)
+.+++.++ .+|||+|||+|.++..|+++|..|+++|++. .+.. +.+.+..++ ....+...++++ ++||+|
T Consensus 24 ~~~~~~~~--~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I 98 (195)
T TIGR00477 24 EAVKTVAP--CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFI 98 (195)
T ss_pred HHhccCCC--CcEEEeCCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEE
Confidence 44444333 3799999999999999999998898888763 2222 122222333 223334455654 689999
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
+++.+++++... .+..++.+++|+|||||++++..|.
T Consensus 99 ~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 99 FSTVVFMFLQAG-RVPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred EEecccccCCHH-HHHHHHHHHHHHhCCCcEEEEEEec
Confidence 999988776543 3467999999999999997766543
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.28 E-value=3.1e-11 Score=115.13 Aligned_cols=122 Identities=21% Similarity=0.247 Sum_probs=85.6
Q ss_pred eEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccCc
Q 046488 328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
+|||||||+|.++..+++. +..+++++++... .+...+...+. +.+...+....|++ ++||+|++..+++|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 6999999999999999876 4678888765211 11112222222 23444555555664 589999999999988
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEEeeccCC----h---------hhHHHHHHHHHHcCceeeEEE
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCA----K---------EDMNDYLEVFKMLKYKKHKWV 453 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~----~---------edL~~~~~~l~~lGfkkl~W~ 453 (480)
.+. ..++.++.|+|||||++++..+... . .....|.+.+++.||+.+...
T Consensus 81 ~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 81 KDK---MDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCH---HHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 765 5699999999999999998764321 0 113567889999999877644
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.28 E-value=6.3e-11 Score=111.76 Aligned_cols=103 Identities=26% Similarity=0.315 Sum_probs=76.3
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhC------CCCeeeecccCCCCCCCc
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRG------LVPLYITINQRVPFFDNT 387 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rg------lip~~~~~ae~LPFpd~S 387 (480)
+.+++.++ .+|||+|||+|.++..++++ +..+++++++. .+ ...+.+. .+.+...+.+.+|+++++
T Consensus 13 ~~~~~~~~--~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~--~~-~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 13 ELLAVQPG--DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE--AM-LALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHcCCCCC--CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH--HH-HHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 34455544 48999999999999999875 24677877652 22 2222221 133344557778899999
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
||+|++..+++|+.+. ..++.++.++|||||++++..
T Consensus 88 ~D~v~~~~~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 88 FDAVRSDRVLQHLEDP---ARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ceEEEEechhhccCCH---HHHHHHHHHHhcCCcEEEEEe
Confidence 9999999999998876 469999999999999998763
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.27 E-value=2.6e-11 Score=121.74 Aligned_cols=132 Identities=19% Similarity=0.215 Sum_probs=81.5
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCCC---CeeeecccCCCCCCCccch
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGLV---PLYITINQRVPFFDNTLDL 390 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rgli---p~~~~~ae~LPFpd~SFDl 390 (480)
+.+++++|. +|||||||.|.++.+++++ |+.|++++++.... +..+++..|+. .+...+...++. +||.
T Consensus 56 ~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~ 130 (273)
T PF02353_consen 56 EKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDR 130 (273)
T ss_dssp TTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SE
T ss_pred HHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCE
Confidence 455788886 8999999999999999998 99999998763211 12233333432 233333344443 9999
Q ss_pred heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh------------------------hhHHHHHHHHHHcC
Q 046488 391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK------------------------EDMNDYLEVFKMLK 446 (480)
Q Consensus 391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~------------------------edL~~~~~~l~~lG 446 (480)
|++..++.|+.... ...++..+.|+|||||++++..+.... ..+..+...++..|
T Consensus 131 IvSi~~~Ehvg~~~-~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~ 209 (273)
T PF02353_consen 131 IVSIEMFEHVGRKN-YPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG 209 (273)
T ss_dssp EEEESEGGGTCGGG-HHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT
T ss_pred EEEEechhhcChhH-HHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC
Confidence 99999999996432 467999999999999999876322111 01234556677888
Q ss_pred ceeeEEEE
Q 046488 447 YKKHKWVV 454 (480)
Q Consensus 447 fkkl~W~~ 454 (480)
|+...|..
T Consensus 210 l~v~~~~~ 217 (273)
T PF02353_consen 210 LEVEDVEN 217 (273)
T ss_dssp -EEEEEEE
T ss_pred EEEEEEEE
Confidence 88777654
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.26 E-value=1e-10 Score=112.34 Aligned_cols=97 Identities=18% Similarity=0.060 Sum_probs=74.3
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC--CCCeeeecccCCCCCCCccchheecccccCccC
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG--LVPLYITINQRVPFFDNTLDLIHTTRFLDGWID 402 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg--lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d 402 (480)
.+|||+|||+|.++..|++. +..+++++++. .+ .+.|++. .+.+..+.+.. |+++++||+|++..+++|+.
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~-l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~- 119 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE--YA-VEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN- 119 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HH-HHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-
Confidence 47999999999999999876 67888888662 33 3344432 24455566555 89999999999999999985
Q ss_pred hhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488 403 FVLLDFILYDWDRVLRPGGLLWIDSFFC 430 (480)
Q Consensus 403 ~~~l~~~L~EI~RVLKPGG~fiI~~f~~ 430 (480)
++.+..++.|+.|++ +++++|..++.
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 445678999999998 57888876654
No 28
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.25 E-value=3.2e-11 Score=114.11 Aligned_cols=96 Identities=26% Similarity=0.315 Sum_probs=73.9
Q ss_pred CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHhC---CCCeeeecccCCCCCCCccchheecccccCcc
Q 046488 327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~ 401 (480)
.+|||+|||+|.++..+++.+ ..+++++++. .+. ..+.+. .+....++.+.+|+++++||+|++..++++..
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GML-AQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHH-HHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 579999999999999998874 4557777542 232 233332 24455667788899999999999999998776
Q ss_pred ChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 402 DFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
+. ..++.++.|+|||||++++..+
T Consensus 113 ~~---~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 DL---SQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CH---HHHHHHHHHHcCCCcEEEEEeC
Confidence 65 4699999999999999998754
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.24 E-value=4.1e-11 Score=117.49 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=71.7
Q ss_pred CeEEEECCCCcHHHHHHhh----CCCEEEEEecCCChhHHHH----HHHhC---CCCeeeecccCCCCCCCccchheecc
Q 046488 327 RIGLDFSIGTGTFAARMRE----FNVTLVSAIINLGAPFNEM----IALRG---LVPLYITINQRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae----~gV~Vv~vd~d~~~~~~~~----iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~ 395 (480)
.+|||+|||+|..+..+++ .+..+++++++. .+.+. ++..+ .+.+..+++..+|++ .+|+|++..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 4799999999999988876 257888888652 33332 22212 244555667777765 499999999
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
+++++.+.. ...++.+++|+|||||.|++.+.+
T Consensus 134 ~l~~l~~~~-~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 134 TLQFLEPSE-RQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHHhCCHHH-HHHHHHHHHHhcCCCCEEEEEEec
Confidence 998876443 367999999999999999998643
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.24 E-value=3e-11 Score=102.35 Aligned_cols=97 Identities=24% Similarity=0.247 Sum_probs=68.1
Q ss_pred CeEEEECCCCcHHHHHHhh--CCCEEEEEecCCChhHHH----HHHHhCC---CCeeeecc-cCCCCCCCccchheecc-
Q 046488 327 RIGLDFSIGTGTFAARMRE--FNVTLVSAIINLGAPFNE----MIALRGL---VPLYITIN-QRVPFFDNTLDLIHTTR- 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~a-e~LPFpd~SFDlV~ss~- 395 (480)
.+|||+|||+|.++..+++ .+..+++++++. .+.+ .+...+. +.+..++. .... ..+.||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGF 79 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCC
Confidence 3799999999999999999 689999998762 2222 2212222 33444545 2333 344599999988
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+++++.+.+....++.++.+.|||||++++.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 5554543333477999999999999999985
No 31
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.24 E-value=3.3e-10 Score=107.59 Aligned_cols=97 Identities=28% Similarity=0.296 Sum_probs=72.0
Q ss_pred CeEEEECCCCcHHHHHHhhCC---CEEEEEecCCChhHHHH----HHHh---CCCCeeeecccCCCCCCCccchheeccc
Q 046488 327 RIGLDFSIGTGTFAARMREFN---VTLVSAIINLGAPFNEM----IALR---GLVPLYITINQRVPFFDNTLDLIHTTRF 396 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~~~~~~~----iA~r---glip~~~~~ae~LPFpd~SFDlV~ss~v 396 (480)
.+|||+|||+|.++..++..+ ..+++++++. .+... +... ..+.+...+...+++.+++||+|+++++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE--GMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 479999999999999998764 6788887652 22221 1111 1233445556777888899999999999
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
++++.+. ..++.++.++|+|||.+++..+
T Consensus 131 l~~~~~~---~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNVPDI---DKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccCCCH---HHHHHHHHHhccCCcEEEEEEe
Confidence 9888765 4689999999999999987643
No 32
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.23 E-value=7.3e-11 Score=113.06 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=93.8
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec-ccCCC-CCCCccchheecccc
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI-NQRVP-FFDNTLDLIHTTRFL 397 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae~LP-Fpd~SFDlV~ss~vL 397 (480)
+.+|+ +|||+|||.|.+.++|.+ +++.+.+++++ +.....+.++++++++++ .+.|+ |+|++||.|+.+.+|
T Consensus 11 I~pgs--rVLDLGCGdG~LL~~L~~~k~v~g~GvEid---~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtL 85 (193)
T PF07021_consen 11 IEPGS--RVLDLGCGDGELLAYLKDEKQVDGYGVEID---PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTL 85 (193)
T ss_pred cCCCC--EEEecCCCchHHHHHHHHhcCCeEEEEecC---HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHH
Confidence 34564 899999999999999987 59999999877 344455566778888876 45564 999999999999999
Q ss_pred cCccChhcHHHHHHHHHhcccCCcEEEEe---------------------------eccCChh----hHHHHHHHHHHcC
Q 046488 398 DGWIDFVLLDFILYDWDRVLRPGGLLWID---------------------------SFFCAKE----DMNDYLEVFKMLK 446 (480)
Q Consensus 398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~---------------------------~f~~~~e----dL~~~~~~l~~lG 446 (480)
.++..+. .+|.||.|| |...+++ .|+.++. .++++.++.+..|
T Consensus 86 Q~~~~P~---~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 86 QAVRRPD---EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred HhHhHHH---HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 9998874 699999888 4466665 1332221 2467888999999
Q ss_pred ceeeEEEEe
Q 046488 447 YKKHKWVVV 455 (480)
Q Consensus 447 fkkl~W~~~ 455 (480)
++-+.....
T Consensus 160 i~I~~~~~~ 168 (193)
T PF07021_consen 160 IRIEERVFL 168 (193)
T ss_pred CEEEEEEEE
Confidence 887765443
No 33
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.23 E-value=5.6e-11 Score=119.08 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=69.8
Q ss_pred eEEEECCCCcHHHHHHhhCCCEEEEEecCCChh-HHHHHHHhCCCCe--eeecccCCCCCCCccchheecccccCccChh
Q 046488 328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAP-FNEMIALRGLVPL--YITINQRVPFFDNTLDLIHTTRFLDGWIDFV 404 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~-~~~~iA~rglip~--~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~ 404 (480)
+|||+|||+|.++..|+++|..++++|.+..+. ...+.+.+..+.+ ...+....++ +++||+|++..+++++.. .
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~-~ 200 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR-E 200 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH-H
Confidence 799999999999999999999998888753211 1122233322232 3333444444 789999999999887653 3
Q ss_pred cHHHHHHHHHhcccCCcEEEEe
Q 046488 405 LLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 405 ~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
.+..++.++.|+|||||++++.
T Consensus 201 ~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 201 RIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHhcCCCcEEEEE
Confidence 3578999999999999997664
No 34
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.22 E-value=1.3e-11 Score=121.55 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=77.0
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh-HHHHHHHhCCCC--eeeecccCCCCCCCccchheecccccCccCh
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP-FNEMIALRGLVP--LYITINQRVPFFDNTLDLIHTTRFLDGWIDF 403 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~-~~~~iA~rglip--~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~ 403 (480)
.+|||||||.|.++..||+.|..|+++|++.... .....|.+.++. .....++.|-...++||+|+|+.+++|++++
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp 140 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDP 140 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCH
Confidence 4799999999999999999999999988763211 111223444443 3334467777767999999999999999998
Q ss_pred hcHHHHHHHHHhcccCCcEEEEee
Q 046488 404 VLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 404 ~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
. .+++++.+.+||||.++++.
T Consensus 141 ~---~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 141 E---SFLRACAKLVKPGGILFLST 161 (243)
T ss_pred H---HHHHHHHHHcCCCcEEEEec
Confidence 5 59999999999999999984
No 35
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.22 E-value=6e-11 Score=115.86 Aligned_cols=93 Identities=20% Similarity=0.146 Sum_probs=70.7
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCC--CCeeeecccCCCCCCCccchheecccccCccC
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDGWID 402 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d 402 (480)
.+|||+|||+|.++..+++. +..+++++++ +.....+.+.. +.+..++.+.++ ++++||+|+++.+++++.+
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s---~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d 108 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERWPAARITGIDSS---PAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLPD 108 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCCC
Confidence 58999999999999999876 4678888865 23333444432 334455555554 5679999999999987766
Q ss_pred hhcHHHHHHHHHhcccCCcEEEEe
Q 046488 403 FVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 403 ~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
. ..++.++.|+|||||.+++.
T Consensus 109 ~---~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 109 H---LELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred H---HHHHHHHHHhcCCCcEEEEE
Confidence 5 46999999999999999885
No 36
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.20 E-value=1.6e-10 Score=117.43 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=92.7
Q ss_pred CCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHh--CC-CCe-eeec-ccCCCCCCCccchheeccccc
Q 046488 325 EIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALR--GL-VPL-YITI-NQRVPFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~r--gl-ip~-~~~~-ae~LPFpd~SFDlV~ss~vL~ 398 (480)
..++|||||||.|.++.+|+.+|. .|++++++...-.+-.+..+ |. ... .+.. .+.||. .++||+|+|+.+|.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 346899999999999999999987 48999876433233222222 11 122 2222 788998 89999999999999
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------------------hhHHHHHHHHHHcCceeeEEEEee
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------------------EDMNDYLEVFKMLKYKKHKWVVVP 456 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------------------edL~~~~~~l~~lGfkkl~W~~~~ 456 (480)
|..++- ..|.++...|||||.+++....-.. .....+...++++||+.++-.-..
T Consensus 194 Hrr~Pl---~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 194 HRRSPL---DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred ccCCHH---HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 998884 5999999999999999976321111 123567889999999988754433
No 37
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.20 E-value=2e-10 Score=110.61 Aligned_cols=138 Identities=18% Similarity=0.178 Sum_probs=88.6
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHHHHHHhCCCCeeeecccCC--------CCCCCccc
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNEMIALRGLVPLYITINQRV--------PFFDNTLD 389 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~L--------PFpd~SFD 389 (480)
++++ .+|||+|||||.++..++++ + ..+++++++. +. ....+.++.+++... ++.+++||
T Consensus 49 ~~~~--~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~---~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 49 FKPG--MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP---MD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCC--CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc---cc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 3444 38999999999999999886 2 4688888753 11 011244555665554 36789999
Q ss_pred hheecccccCccChh--------cHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCC
Q 046488 390 LIHTTRFLDGWIDFV--------LLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKD 461 (480)
Q Consensus 390 lV~ss~vL~h~~d~~--------~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~ 461 (480)
+|+|..+......+. ..+.+|.++.|+|||||.|++..|.. ++..++...++. +|..+.+.........
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~ 196 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRS-LFTKVKVRKPDSSRAR 196 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHh-CceEEEEECCcccccc
Confidence 999976654332210 12458999999999999999977654 333444444433 5777766433222225
Q ss_pred CcceeEEEE
Q 046488 462 DREVFFSAV 470 (480)
Q Consensus 462 ~~E~~lsav 470 (480)
..|.|+.+.
T Consensus 197 s~e~~~~~~ 205 (209)
T PRK11188 197 SREVYIVAT 205 (209)
T ss_pred CceeEEEee
Confidence 568887654
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.19 E-value=2.8e-10 Score=107.01 Aligned_cols=97 Identities=25% Similarity=0.290 Sum_probs=73.1
Q ss_pred CeEEEECCCCcHHHHHHhhCC---CEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccchheecccccC
Q 046488 327 RIGLDFSIGTGTFAARMREFN---VTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLDLIHTTRFLDG 399 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFDlV~ss~vL~h 399 (480)
.+|||+|||+|.++..+++.. ..+++++++. .+......+ ..+.+..++...+++++++||+|++..++++
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 489999999999999998763 3677777652 222222221 1244555667778888899999999999888
Q ss_pred ccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 400 WIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
..+. ..++.++.++|||||++++.++
T Consensus 119 ~~~~---~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 119 VTDI---QKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred cccH---HHHHHHHHHHcCCCcEEEEEEe
Confidence 7765 4699999999999999998654
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.18 E-value=8.9e-11 Score=106.09 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=72.7
Q ss_pred CeEEEECCCCcHHHHHHhh-C--CCEEEEEecCCChhHHH---HHHHhCC---CCeeeecccCCC--CCCCccchheecc
Q 046488 327 RIGLDFSIGTGTFAARMRE-F--NVTLVSAIINLGAPFNE---MIALRGL---VPLYITINQRVP--FFDNTLDLIHTTR 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae-~--gV~Vv~vd~d~~~~~~~---~iA~rgl---ip~~~~~ae~LP--Fpd~SFDlV~ss~ 395 (480)
.+|||+|||+|.++..|++ . +..++++|.+. .+.. +.+++.. +.+..++.+.++ ++ +.||+|++..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 4899999999999999994 3 67889988763 2222 2222232 344556666677 76 9999999999
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
++++..+. ..++.++.|+|||||.+++..+.
T Consensus 82 ~l~~~~~~---~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDP---EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHH---HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCH---HHHHHHHHHHcCCCcEEEEEECC
Confidence 99777666 46999999999999999987655
No 40
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.18 E-value=2.4e-11 Score=102.60 Aligned_cols=90 Identities=26% Similarity=0.351 Sum_probs=65.5
Q ss_pred EEEECCCCcHHHHHHhhC---C--CEEEEEecCCChhHHHHHHHhC-----CCCeeeecccCCCCCCCccchheeccc-c
Q 046488 329 GLDFSIGTGTFAARMREF---N--VTLVSAIINLGAPFNEMIALRG-----LVPLYITINQRVPFFDNTLDLIHTTRF-L 397 (480)
Q Consensus 329 VLDVGCGtG~fAa~Lae~---g--V~Vv~vd~d~~~~~~~~iA~rg-----lip~~~~~ae~LPFpd~SFDlV~ss~v-L 397 (480)
|||+|||+|..+..+++. + ..++++|++ ..+....+++. .+.+++++++.+++.+++||+|+|+.. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s--~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDIS--PEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES---HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECC--HHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999876 3 788888865 24433333222 234566778889999999999999655 7
Q ss_pred cCccChhcHHHHHHHHHhcccCCc
Q 046488 398 DGWIDFVLLDFILYDWDRVLRPGG 421 (480)
Q Consensus 398 ~h~~d~~~l~~~L~EI~RVLKPGG 421 (480)
+|+.+ ..+..++.++.++|||||
T Consensus 79 ~~~~~-~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSP-EELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSH-HHHHHHHHHHHHTEEEEE
T ss_pred CCCCH-HHHHHHHHHHHHHhCCCC
Confidence 77544 445889999999999998
No 41
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.17 E-value=1e-10 Score=116.13 Aligned_cols=89 Identities=24% Similarity=0.331 Sum_probs=65.3
Q ss_pred CeEEEECCCCcHHHHHHhhC-----CCEEEEEecCCChhHHHHHHHh-CCCCeeeecccCCCCCCCccchheecccccCc
Q 046488 327 RIGLDFSIGTGTFAARMREF-----NVTLVSAIINLGAPFNEMIALR-GLVPLYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~-----gV~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.+|||+|||+|.++..+++. +..++++|++ ..+...++++ ..+.+.++++..+||++++||+|++..+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s--~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDIS--KVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCC--HHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 57999999999999988764 2356777765 3443333332 2244556778899999999999997543
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+. .+.|+.|+|||||+|++..
T Consensus 161 --~~----~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 161 --PC----KAEELARVVKPGGIVITVT 181 (272)
T ss_pred --CC----CHHHHHhhccCCCEEEEEe
Confidence 21 4789999999999998863
No 42
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=5.7e-11 Score=114.98 Aligned_cols=111 Identities=22% Similarity=0.109 Sum_probs=79.6
Q ss_pred eEEEECCCCcHHHHHHhh-CCCEEEEEecCCChhHHHHH----HHhCC---CC-eeeecccCCC-CCCCccchheecccc
Q 046488 328 IGLDFSIGTGTFAARMRE-FNVTLVSAIINLGAPFNEMI----ALRGL---VP-LYITINQRVP-FFDNTLDLIHTTRFL 397 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~i----A~rgl---ip-~~~~~ae~LP-Fpd~SFDlV~ss~vL 397 (480)
.||+||||||..-.++.- .+..++.++++. ..+.+ +++.. +. ++++..+.+| .+|+|+|.|+++.+|
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~---~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNE---KMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcH---HHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 489999999987666653 477888888763 22322 22222 22 4567799999 899999999999999
Q ss_pred cCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhh-HH-HHHHHHHH
Q 046488 398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKED-MN-DYLEVFKM 444 (480)
Q Consensus 398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~ed-L~-~~~~~l~~ 444 (480)
....++ .+.|.|+.|+|||||++++...-..... +. .+++.+++
T Consensus 156 CSve~~---~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 156 CSVEDP---VKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred eccCCH---HHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhch
Confidence 988887 4699999999999999988643322222 22 35555555
No 43
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.17 E-value=9.5e-11 Score=113.71 Aligned_cols=98 Identities=17% Similarity=0.072 Sum_probs=71.7
Q ss_pred CeEEEECCCCcHHHHHHhhC----CCEEEEEecCCChhHHHHH----HHhC---CCCeeeecccCCCCCCCccchheecc
Q 046488 327 RIGLDFSIGTGTFAARMREF----NVTLVSAIINLGAPFNEMI----ALRG---LVPLYITINQRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~~~~~~~i----A~rg---lip~~~~~ae~LPFpd~SFDlV~ss~ 395 (480)
.+|||+|||+|.++..++++ +..+++++++. .+.... ...+ .+.+..++...++++ .+|+|++.+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 47999999999999988863 56788888753 333222 1111 134455667777775 489999999
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
+++|+.+.+ ...++.+++|+|||||.|++.+..
T Consensus 131 ~l~~~~~~~-~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 131 TLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred chhhCCHHH-HHHHHHHHHHhcCCCeEEEEeecc
Confidence 998876433 367999999999999999998643
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.16 E-value=1.6e-10 Score=122.95 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=87.6
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHH-hC---CCCeeeecc--cCCCCCCCccchheecccccCc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL-RG---LVPLYITIN--QRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~-rg---lip~~~~~a--e~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.+|||+|||+|.++..|++++..+++++++. .+...... .+ .+.++.+++ ..+|+++++||+|++..+++|+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~--~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAGQVIALDFIE--SVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCH--HHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC
Confidence 4899999999999999999877888887653 34333221 12 133444444 3688999999999999999888
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEEeeccCCh----------h---hHHHHHHHHHHcCceeeE
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----------E---DMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----------e---dL~~~~~~l~~lGfkkl~ 451 (480)
.+.. +..++.+++|+|||||++++.+..... . ....|.+++...|+....
T Consensus 117 ~~~~-~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 117 SDKE-VENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred CHHH-HHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence 7643 367999999999999999886421110 0 134677888888876553
No 45
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.16 E-value=1.3e-10 Score=115.84 Aligned_cols=98 Identities=20% Similarity=0.164 Sum_probs=71.0
Q ss_pred CCeEEEECCCCcH----HHHHHhhC-------CCEEEEEecCCChhHHHHHHHhCC------------------------
Q 046488 326 IRIGLDFSIGTGT----FAARMREF-------NVTLVSAIINLGAPFNEMIALRGL------------------------ 370 (480)
Q Consensus 326 iR~VLDVGCGtG~----fAa~Lae~-------gV~Vv~vd~d~~~~~~~~iA~rgl------------------------ 370 (480)
..+|+|+|||||. +|..+++. ++.++++|++. .+ ...|+++.
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~--~~-L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL--KA-LEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH--HH-HHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3579999999995 56666653 46788888762 33 33344432
Q ss_pred ----------CCeeeecccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 371 ----------VPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 371 ----------ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+.+...+....|+++++||+|+|..+++++.++. ...++.+++|+|||||++++.+
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-QRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-HHHHHHHHHHHhCCCeEEEEEC
Confidence 2223344566777889999999999999886543 3679999999999999999853
No 46
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.16 E-value=3.2e-10 Score=110.03 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=87.1
Q ss_pred chhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCcc
Q 046488 309 LTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTL 388 (480)
Q Consensus 309 ~~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SF 388 (480)
+-.|.+|..+.....+ ..|-|+|||.+.+|..+. .+++|.++|+....+ .+...+...+|.++++.
T Consensus 58 nPvd~iI~~l~~~~~~--~viaD~GCGdA~la~~~~-~~~~V~SfDLva~n~-----------~Vtacdia~vPL~~~sv 123 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKS--LVIADFGCGDAKLAKAVP-NKHKVHSFDLVAPNP-----------RVTACDIANVPLEDESV 123 (219)
T ss_dssp -HHHHHHHHHCTS-TT--S-EEEES-TT-HHHHH---S---EEEEESS-SST-----------TEEES-TTS-S--TT-E
T ss_pred CcHHHHHHHHHhcCCC--EEEEECCCchHHHHHhcc-cCceEEEeeccCCCC-----------CEEEecCccCcCCCCce
Confidence 3466677665544322 489999999999998765 457888888642111 24456678999999999
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEE
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFS 468 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~ls 468 (480)
|++++...|+. .+ +..++.|.+|||||||.++|......-++.+.+.+.++.+||+...-.. ....|..
T Consensus 124 Dv~VfcLSLMG--Tn--~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~-------~n~~F~~ 192 (219)
T PF05148_consen 124 DVAVFCLSLMG--TN--WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE-------SNKHFVL 192 (219)
T ss_dssp EEEEEES---S--S---HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE---------STTEEE
T ss_pred eEEEEEhhhhC--CC--cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc-------CCCeEEE
Confidence 99997666643 22 2569999999999999999987655555778889999999998553211 1345666
Q ss_pred EEEEeCCC
Q 046488 469 AVLEKPPR 476 (480)
Q Consensus 469 av~qKP~~ 476 (480)
..++|..+
T Consensus 193 f~F~K~~~ 200 (219)
T PF05148_consen 193 FEFKKIRK 200 (219)
T ss_dssp EEEEE-SS
T ss_pred EEEEEcCc
Confidence 67777654
No 47
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.15 E-value=3.4e-10 Score=108.96 Aligned_cols=150 Identities=19% Similarity=0.101 Sum_probs=90.7
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC-----CCeeeecccCCCCCCCccchheecc
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL-----VPLYITINQRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl-----ip~~~~~ae~LPFpd~SFDlV~ss~ 395 (480)
+..+..+++||+|||.|.|+..|+.+--.++++|.+ +.....|+++. +.+.+..... ..|++.||+|+++-
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis---~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDIS---PRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSE 114 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES----HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEeCC---HHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEeh
Confidence 556667899999999999999999984455555543 33333444432 2223333322 25789999999999
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------hhHHHHHHHHHHcCceeeE-EEEeeccCCCCcceeE
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------EDMNDYLEVFKMLKYKKHK-WVVVPKRDKDDREVFF 467 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------edL~~~~~~l~~lGfkkl~-W~~~~k~d~~~~E~~l 467 (480)
+++.+.+.+.+..++..+...|+|||.+++.+|.... ..-+.+.+++... +..+. ...... ..+|--+
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~---~~~~~~~ 190 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECRGG---SPNEDCL 190 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-S---STTSEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEcCC---CCCCceE
Confidence 9998887666788999999999999999998764211 1123455566553 44443 222222 2245566
Q ss_pred EEEEEeCCCCC
Q 046488 468 SAVLEKPPRPF 478 (480)
Q Consensus 468 sav~qKP~~~~ 478 (480)
.+-++||.+.|
T Consensus 191 ~~~~~~~~~~~ 201 (201)
T PF05401_consen 191 LARFRNPVSAS 201 (201)
T ss_dssp EEEEE--SSS-
T ss_pred eeeecCCcCCC
Confidence 78999999864
No 48
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.14 E-value=6e-10 Score=105.01 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=82.2
Q ss_pred eEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeecccC-C-CCCCCccchheecccccCccChh
Q 046488 328 IGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQR-V-PFFDNTLDLIHTTRFLDGWIDFV 404 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~-L-PFpd~SFDlV~ss~vL~h~~d~~ 404 (480)
+|||+|||+|.++..+++. +..+++++++ ..+.. .+.+..+.++.++++. + ++++++||+|+++.+++|+.++
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~giD~s--~~~i~-~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~- 91 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGIEID--QDGVL-ACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP- 91 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEEeCC--HHHHH-HHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH-
Confidence 7999999999999999764 5666777654 23333 3334446666666543 5 4889999999999999988776
Q ss_pred cHHHHHHHHHhcccCCcEEEEee-------------------------ccCC----hhhHHHHHHHHHHcCceeeEEEEe
Q 046488 405 LLDFILYDWDRVLRPGGLLWIDS-------------------------FFCA----KEDMNDYLEVFKMLKYKKHKWVVV 455 (480)
Q Consensus 405 ~l~~~L~EI~RVLKPGG~fiI~~-------------------------f~~~----~edL~~~~~~l~~lGfkkl~W~~~ 455 (480)
..++.|+.|+++++.. .+-. |+.. -...+.+.++++..||+.+.....
T Consensus 92 --~~~l~e~~r~~~~~ii-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 92 --EEILDEMLRVGRHAIV-SFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred --HHHHHHHHHhCCeEEE-EcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 4689999999876422 1100 0000 011356789999999997765443
No 49
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.14 E-value=1.6e-10 Score=116.59 Aligned_cols=110 Identities=27% Similarity=0.267 Sum_probs=82.9
Q ss_pred HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchh
Q 046488 315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLI 391 (480)
Q Consensus 315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV 391 (480)
+.+.|.+++|. +|||||||.|.++.+++++ |++|++++++.++- .+..++++|.-.-+.-..+..+..++.||-|
T Consensus 64 ~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrI 141 (283)
T COG2230 64 ILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRI 141 (283)
T ss_pred HHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccccee
Confidence 34567888886 8999999999999999987 89999999874321 2234555555322222245555556669999
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+|..+++|+.... ...+|.-++++|+|||.+++..
T Consensus 142 vSvgmfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 142 VSVGMFEHVGKEN-YDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eehhhHHHhCccc-HHHHHHHHHhhcCCCceEEEEE
Confidence 9999999987533 3679999999999999998764
No 50
>PRK04266 fibrillarin; Provisional
Probab=99.13 E-value=4.6e-10 Score=109.86 Aligned_cols=127 Identities=11% Similarity=0.095 Sum_probs=82.0
Q ss_pred cCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCCCCeeeecccC----CCCCCCcc
Q 046488 319 LDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGLVPLYITINQR----VPFFDNTL 388 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rglip~~~~~ae~----LPFpd~SF 388 (480)
++++++. +|||+|||+|.++..+++. +-.+++++.+. .+.+ .+..+..+..+.+++.. .++ +++|
T Consensus 68 l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~--~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~ 142 (226)
T PRK04266 68 FPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP--RPMRELLEVAEERKNIIPILADARKPERYAHV-VEKV 142 (226)
T ss_pred CCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH--HHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccC
Confidence 6777775 8999999999999999886 23677776542 3322 22222234444444432 223 3569
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEE------eeccCChhh-HHHHHHHHHHcCceeeEEEEe
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI------DSFFCAKED-MNDYLEVFKMLKYKKHKWVVV 455 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI------~~f~~~~ed-L~~~~~~l~~lGfkkl~W~~~ 455 (480)
|+|++... ++.....++.++.|+|||||+++| .+|...... .+...+.++..||+.+.+...
T Consensus 143 D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 143 DVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred CEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 99985322 222223578999999999999999 444433322 234558888999999887664
No 51
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.12 E-value=3.6e-11 Score=100.61 Aligned_cols=91 Identities=23% Similarity=0.331 Sum_probs=50.5
Q ss_pred EEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCCCCee-ee--cccCCCC-CCCccchheecccccCcc
Q 046488 330 LDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGLVPLY-IT--INQRVPF-FDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 330 LDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rglip~~-~~--~ae~LPF-pd~SFDlV~ss~vL~h~~ 401 (480)
||||||+|.++..+.++ +..++++|++...- +.+++...+..... .. ..+.... ..++||+|++..+++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999887 67778887764221 22233333322111 11 1222222 226999999999999994
Q ss_pred ChhcHHHHHHHHHhcccCCcEE
Q 046488 402 DFVLLDFILYDWDRVLRPGGLL 423 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPGG~f 423 (480)
+. ..++..++++|||||+|
T Consensus 81 ~~---~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DI---EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -H---HHHHHHHTTT-TSS-EE
T ss_pred hH---HHHHHHHHHHcCCCCCC
Confidence 44 57999999999999985
No 52
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.10 E-value=6.5e-10 Score=111.95 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=71.7
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCc
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNT 387 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~S 387 (480)
+.+++.++ ++|||||||+|.++..++++ +..++.++. +.+.+ .++..+. +.++.++....++++
T Consensus 143 ~~~~~~~~--~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~---~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-- 215 (306)
T TIGR02716 143 EEAKLDGV--KKMIDVGGGIGDISAAMLKHFPELDSTILNL---PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-- 215 (306)
T ss_pred HHcCCCCC--CEEEEeCCchhHHHHHHHHHCCCCEEEEEec---HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--
Confidence 34444443 58999999999999999887 456666653 12222 2223332 334445554455554
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
+|+|++++++++|.+.. ...++.+++|+|||||+++|.++
T Consensus 216 ~D~v~~~~~lh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 216 ADAVLFCRILYSANEQL-STIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCEEEeEhhhhcCChHH-HHHHHHHHHHhcCCCCEEEEEEe
Confidence 69999999999887643 25699999999999999998754
No 53
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.09 E-value=3.6e-10 Score=118.36 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=72.7
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCC----CCeeeecccCCCCCCCccchh
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGL----VPLYITINQRVPFFDNTLDLI 391 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rgl----ip~~~~~ae~LPFpd~SFDlV 391 (480)
+.+.++++. +|||||||+|.++..++++ |+.+++++++ +.+...+.++. +.+...+...+ +++||+|
T Consensus 161 ~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~giDlS---~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 161 RKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVGVTIS---AEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred HHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhccCeEEEEECchhhc---CCCCCEE
Confidence 345566664 8999999999999999875 8888888865 23333333321 12222333333 5799999
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
++..+++|+.... +..++.++.|+|||||++++..
T Consensus 233 vs~~~~ehvg~~~-~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGPKN-YRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCChHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999988875432 3579999999999999999864
No 54
>PRK06922 hypothetical protein; Provisional
Probab=99.09 E-value=3e-10 Score=125.35 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=75.9
Q ss_pred hcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh---CC--CCeeeecccCCC--CCCCcc
Q 046488 318 VLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR---GL--VPLYITINQRVP--FFDNTL 388 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r---gl--ip~~~~~ae~LP--Fpd~SF 388 (480)
+++..++ .+|||+|||+|.++..+++. +..++++|++. .+......+ .. +.+..+++..+| |++++|
T Consensus 413 i~d~~~g--~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~--~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 413 ILDYIKG--DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE--NVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred HhhhcCC--CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCE
Confidence 4444444 38999999999999888864 56888888653 333322211 11 223456666788 889999
Q ss_pred chheecccccCccC----------hhcHHHHHHHHHhcccCCcEEEEee
Q 046488 389 DLIHTTRFLDGWID----------FVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 389 DlV~ss~vL~h~~d----------~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+|+++.++++|.+ ...+..+++++.|+|||||++++.+
T Consensus 489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999998887631 2334679999999999999999975
No 55
>PRK06202 hypothetical protein; Provisional
Probab=99.09 E-value=6.2e-10 Score=107.57 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=69.1
Q ss_pred CCeEEEECCCCcHHHHHHhh----CC--CEEEEEecCCChhHHHHHHHhC----CCCeeeecccCCCCCCCccchheecc
Q 046488 326 IRIGLDFSIGTGTFAARMRE----FN--VTLVSAIINLGAPFNEMIALRG----LVPLYITINQRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae----~g--V~Vv~vd~d~~~~~~~~iA~rg----lip~~~~~ae~LPFpd~SFDlV~ss~ 395 (480)
..+|||+|||+|.++..|++ .| +.++++|++. .+.. .|.+. .+......++.+++++++||+|+|+.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~-~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVA-FARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHH-HHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 35899999999999888864 23 4788887652 3333 33332 23444555677888899999999999
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+++|+.+++ +..++.|+.|++| |.+++.
T Consensus 138 ~lhh~~d~~-~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 138 FLHHLDDAE-VVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred eeecCChHH-HHHHHHHHHHhcC--eeEEEe
Confidence 999987653 3579999999999 444554
No 56
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.07 E-value=6.4e-10 Score=106.22 Aligned_cols=118 Identities=22% Similarity=0.239 Sum_probs=77.6
Q ss_pred CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecc-cCCC--CCCCccchheec
Q 046488 326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL--VPLYITIN-QRVP--FFDNTLDLIHTT 394 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~a-e~LP--Fpd~SFDlV~ss 394 (480)
..+|||+|||+|.++..+++. +..+++++++. .+.. .+...+. +.+..+++ +.++ +++++||+|++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~--~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHE--PGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEech--HHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 358999999999999999875 45678887663 2222 2222222 33455666 7777 889999999986
Q ss_pred ccccCccC------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 395 RFLDGWID------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 395 ~vL~h~~d------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
+.. +|.. ......++.++.|+|||||+|++.. ....-...+.+.++..|+.
T Consensus 119 ~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 119 FPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT--DWEGYAEYMLEVLSAEGGF 175 (202)
T ss_pred CCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc--CCHHHHHHHHHHHHhCccc
Confidence 643 2321 0012568999999999999999852 1222234566677776653
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.07 E-value=2e-09 Score=100.08 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=82.6
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC-CCeeeecccCCCCCCCccch
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL-VPLYITINQRVPFFDNTLDL 390 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl-ip~~~~~ae~LPFpd~SFDl 390 (480)
++.+.+...++ .+|||+|||+|.++..+++.+..+++++++.... +...++..+. +.+..++.... .+++||+
T Consensus 10 ~l~~~l~~~~~--~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~ 85 (179)
T TIGR00537 10 LLEANLRELKP--DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG--VRGKFDV 85 (179)
T ss_pred HHHHHHHhcCC--CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc--cCCcccE
Confidence 44444443333 3799999999999999999877788888663211 1112222221 22233333332 3569999
Q ss_pred heecccccCccCh------------------hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488 391 IHTTRFLDGWIDF------------------VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 391 V~ss~vL~h~~d~------------------~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl 450 (480)
|+++-.+++..+. ..+..++.++.|+|||||.+++...... ....+.+.+++.||...
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRYE 161 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeEE
Confidence 9998766554321 1135689999999999999988653322 23556678888898644
No 58
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.06 E-value=2.4e-09 Score=100.49 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=78.9
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCC--------CCCCccc
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVP--------FFDNTLD 389 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LP--------Fpd~SFD 389 (480)
+.++. +|||+|||+|.++..++++ ...+++++++.. . ....+.....+....+ +++++||
T Consensus 30 i~~g~--~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~---~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 30 IKPGD--TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM---K----PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred cCCCC--EEEEecCCCCHHHHHHHHHhCCCceEEEEecccc---c----cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 45554 8999999999999888765 235777776632 1 1112334444433322 5678999
Q ss_pred hheeccccc---Ccc-----ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCC
Q 046488 390 LIHTTRFLD---GWI-----DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKD 461 (480)
Q Consensus 390 lV~ss~vL~---h~~-----d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~ 461 (480)
+|++..+.+ +|. ....++.++.++.++|||||++++..+. .+.+..+...++. +|....-.........
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~--~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~ 177 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ--GEEIDEYLNELRK-LFEKVKVTKPQASRKR 177 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc--CccHHHHHHHHHh-hhceEEEeCCCCCCcc
Confidence 999854321 111 1112356899999999999999986543 2333444444433 2432222111111125
Q ss_pred CcceeEEE
Q 046488 462 DREVFFSA 469 (480)
Q Consensus 462 ~~E~~lsa 469 (480)
..|+|+..
T Consensus 178 ~~~~~~~~ 185 (188)
T TIGR00438 178 SAEVYIVA 185 (188)
T ss_pred cceEEEEE
Confidence 67888754
No 59
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.06 E-value=8.7e-10 Score=108.48 Aligned_cols=127 Identities=24% Similarity=0.292 Sum_probs=79.8
Q ss_pred CeEEEECCCCcHHHHHHhhCCCE-EEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488 327 RIGLDFSIGTGTFAARMREFNVT-LVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF 403 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~ 403 (480)
.+|||+|||+|.++..++..|.. ++++|++...- +.......+ +... ..++..+.+||+|+++....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~----~~~~~~~~~fD~Vvani~~~----- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VELN----VYLPQGDLKADVIVANILAN----- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CCce----EEEccCCCCcCEEEEcCcHH-----
Confidence 48999999999999988887664 77887763111 111222222 2111 11233334899999864321
Q ss_pred hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEeC
Q 046488 404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKP 474 (480)
Q Consensus 404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qKP 474 (480)
.+..++.++.|+|||||+++++++.. ++.+.+...++..||+...-.. .++|. +.+++|+
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~~-------~~~W~-~~~~~~~ 250 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDEVLE-------RGEWV-ALVGKKK 250 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEEE-------eCCEE-EEEEEeC
Confidence 12468999999999999999987653 3345667788888987654211 13444 4566664
No 60
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.05 E-value=9.1e-10 Score=107.62 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=93.4
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCC--Ceee-ecccCCCCCCCccchhee
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLV--PLYI-TINQRVPFFDNTLDLIHT 393 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgli--p~~~-~~ae~LPFpd~SFDlV~s 393 (480)
++|++.++..+-|||||||+|..+..|.+.|...+++|++ +.|++.... +.+ .+.+ +..+.+||.+++||.|++
T Consensus 42 ELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiS--psML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 42 ELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDIS--PSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred HHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCC--HHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEE
Confidence 4666766556789999999999999999999878888765 345544333 332 2344 348999999999999998
Q ss_pred cccccCcc---------ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 394 TRFLDGWI---------DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 394 s~vL~h~~---------d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
..++. |. +...+-.++.-++.+|++|++.++.-+-...++++.+...+...||.
T Consensus 119 ISAvQ-WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 119 ISAVQ-WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eeeee-eecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence 77663 32 12234567888999999999987765444555667777777788875
No 61
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.04 E-value=1e-09 Score=105.39 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=72.1
Q ss_pred eEEEECCCCcHHHHHHhhCCCEEEEEecCCCh-hHHHHHHHhCCCCe--eeecccCCCCCCCccchheecccccCccChh
Q 046488 328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGA-PFNEMIALRGLVPL--YITINQRVPFFDNTLDLIHTTRFLDGWIDFV 404 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~-~~~~~iA~rglip~--~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~ 404 (480)
++||+|||.|..+.+|+++|..|+++|.+..+ ....++|.+..+++ ...+.+...++ +.||+|+++.+++++..+
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~- 110 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRE- 110 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GG-
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHH-
Confidence 79999999999999999999999999876422 12345566665554 33445666664 789999998888777644
Q ss_pred cHHHHHHHHHhcccCCcEEEEeec
Q 046488 405 LLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 405 ~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
.+..++..|...++|||++++..+
T Consensus 111 ~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 111 LRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp GHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhcCCcEEEEEEEe
Confidence 457899999999999999888543
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.03 E-value=1.7e-09 Score=102.15 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=74.2
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh-HHHHH-HHhCC--CCeeeecccCCCCCCCccchheecccccCc
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP-FNEMI-ALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~-~~~~i-A~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.+|||+|||+|.++..++.. +..+++++.+...- +..+. ++.+. +.++.++++.++ .+++||+|++.. +++
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS- 120 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC-
Confidence 48999999999999888764 35678887653211 11222 22232 334456666664 468999999855 322
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
. ..++.++.|+|||||.+++........++....+.+...|++.+.
T Consensus 121 --~---~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 121 --L---NVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred --H---HHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEee
Confidence 2 357889999999999998864322233344444555556776553
No 63
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.02 E-value=1.9e-09 Score=103.12 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=81.6
Q ss_pred CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhC---CCCeeeecccCCCCCCCccchheeccccc
Q 046488 326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~ 398 (480)
..+|||+|||+|.++..+++.+..+++++++. .+... ....+ .+.+.+++.+.++ ++||+|++..+++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISE--QMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 45899999999999999999888888888763 22221 11111 1234444555554 8999999999988
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEeecc-------------CCh--------hhHHHHHHHHHHcCceeeE
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFF-------------CAK--------EDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~-------------~~~--------edL~~~~~~l~~lGfkkl~ 451 (480)
|++... +..++.++.|++++|+++.+.... ... -..+++.++++.+||+.+.
T Consensus 131 ~~~~~~-~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 131 HYPASD-MAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred hCCHHH-HHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 876433 477999999999988877664210 000 0124567788888887664
No 64
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.01 E-value=5.5e-09 Score=99.58 Aligned_cols=113 Identities=16% Similarity=0.072 Sum_probs=76.2
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC--CCeeeecccCCCCCCCccchheecccccCc
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.+|||+|||+|.++..++.. +..+++++++.... +...++..+. +.+..++++.++. +++||+|++...
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~---- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV---- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc----
Confidence 48999999999999988753 67888888763211 1222223332 3345566667777 789999998642
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl 450 (480)
.+. ..++.++.|+|||||++++..... ....+.++.+.+|+.-.
T Consensus 122 ~~~---~~~l~~~~~~LkpGG~lv~~~~~~---~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ASL---SDLVELCLPLLKPGGRFLALKGRD---PEEEIAELPKALGGKVE 165 (187)
T ss_pred cCH---HHHHHHHHHhcCCCeEEEEEeCCC---hHHHHHHHHHhcCceEe
Confidence 222 568999999999999999864322 23445567777787633
No 65
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.01 E-value=6.8e-09 Score=97.21 Aligned_cols=123 Identities=16% Similarity=0.131 Sum_probs=78.5
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccch
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLDL 390 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDl 390 (480)
+.+.+.++ .+|||+|||+|.++..++++ +..+++++++... .+...+...+. +.+..+... .++ +++||+
T Consensus 25 ~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~ 100 (187)
T PRK08287 25 SKLELHRA--KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADA 100 (187)
T ss_pred HhcCCCCC--CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCE
Confidence 44555544 48999999999999999876 3577888765311 11112222222 222333332 233 468999
Q ss_pred heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
|++.....+ +..++.++.++|||||++++.... .++...+..++++.||+.+.
T Consensus 101 v~~~~~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 101 IFIGGSGGN------LTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred EEECCCccC------HHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcce
Confidence 998765432 245889999999999999885432 23345667789999987554
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.97 E-value=7.8e-09 Score=99.43 Aligned_cols=98 Identities=15% Similarity=0.235 Sum_probs=69.5
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC-CCeeeecccCCC-CCCCccchheecccccCccC
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL-VPLYITINQRVP-FFDNTLDLIHTTRFLDGWID 402 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl-ip~~~~~ae~LP-Fpd~SFDlV~ss~vL~h~~d 402 (480)
.+|||||||+|.++..+++.+..+++++++.... +...+...+. +.........++ ..++.||+|+++.++.+..+
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~ 129 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPD 129 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCC
Confidence 4799999999999999998888888887653211 1111111122 222233334443 45689999999999998877
Q ss_pred hhcHHHHHHHHHhcccCCcEEEEee
Q 046488 403 FVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 403 ~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
. ..++.++.++|+|||++++..
T Consensus 130 ~---~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 130 P---ASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred H---HHHHHHHHHHcCCCcEEEEEe
Confidence 6 458999999999999998864
No 67
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.96 E-value=2.4e-09 Score=103.83 Aligned_cols=99 Identities=9% Similarity=-0.071 Sum_probs=72.6
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC------------------CCeeeecccCCCCC-CCc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL------------------VPLYITINQRVPFF-DNT 387 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl------------------ip~~~~~ae~LPFp-d~S 387 (480)
.+|||+|||.|..+..|+++|..|++++++. .+.++++.+.. +.+++++...++.. ...
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~--~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSE--IAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCH--HHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 3899999999999999999999999998763 34444333221 23345555555432 357
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
||.|+-..+++|++.. ....++..+.+.|||||++++..+
T Consensus 114 fD~i~D~~~~~~l~~~-~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 114 VDAVYDRAALIALPEE-MRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred cCEEEechhhccCCHH-HHHHHHHHHHHHcCCCCeEEEEEE
Confidence 9999988888887544 347799999999999998776654
No 68
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.95 E-value=5.1e-09 Score=99.64 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=71.0
Q ss_pred CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCC-CCccchheeccccc
Q 046488 326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFF-DNTLDLIHTTRFLD 398 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFp-d~SFDlV~ss~vL~ 398 (480)
..+|||+|||+|.++..+++.+..+++++++. .+.. .....+. +.+.....+.++.. +++||+|++..+++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASE--ENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 34799999999999999988877888887652 2222 2222222 23333445555554 48999999999998
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
+..+. ..++.++.++|+|||.+++..+
T Consensus 124 ~~~~~---~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HVPDP---QAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hCCCH---HHHHHHHHHhcCCCcEEEEEec
Confidence 88766 4699999999999999888643
No 69
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.93 E-value=1.2e-09 Score=109.06 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=69.5
Q ss_pred CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC--CC-----------eeeecccCCCCCCCccchhe
Q 046488 326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL--VP-----------LYITINQRVPFFDNTLDLIH 392 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl--ip-----------~~~~~ae~LPFpd~SFDlV~ 392 (480)
.++|||+|||+|.++..|++.|..|+++|+. +.+...|.+.. -| .....++.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s---~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDAS---DDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeeccc---HHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 4679999999999999999999999998865 23333443321 11 111123332 23399999
Q ss_pred ecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+.+++|+.++. .++.-+.+.|||||.++|+.
T Consensus 164 csevleHV~dp~---~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 164 CSEVLEHVKDPQ---EFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eHHHHHHHhCHH---HHHHHHHHHhCCCCceEeee
Confidence 999999998884 59999999999999999973
No 70
>PTZ00146 fibrillarin; Provisional
Probab=98.92 E-value=1.6e-08 Score=102.86 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=86.1
Q ss_pred cCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhH---HHHHHH-hCCCCeeeecccC---CCCCCCcc
Q 046488 319 LDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPF---NEMIAL-RGLVPLYITINQR---VPFFDNTL 388 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~---~~~iA~-rglip~~~~~ae~---LPFpd~SF 388 (480)
+.++++. +|||+|||+|.++..+++. + -.|++++.+ +.+ +...+. +..+..++.++.. +++...+|
T Consensus 128 l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s--~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 128 IPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS--HRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred eccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc--HHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCC
Confidence 4567774 8999999999999999986 2 257777654 222 223333 3334444444321 23345689
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEe-eccC-----Chhh-HHHHHHHHHHcCceeeEEEEeeccCCC
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID-SFFC-----AKED-MNDYLEVFKMLKYKKHKWVVVPKRDKD 461 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~-~f~~-----~~ed-L~~~~~~l~~lGfkkl~W~~~~k~d~~ 461 (480)
|+|++... . ++. ...++.++.|+|||||+|+|. .+.+ +.++ ++.-.+.++..||+.+.-...... .
T Consensus 204 DvV~~Dva-~--pdq--~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py--~ 276 (293)
T PTZ00146 204 DVIFADVA-Q--PDQ--ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF--E 276 (293)
T ss_pred CEEEEeCC-C--cch--HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc--c
Confidence 99998664 2 222 245778999999999999984 1111 1222 222247788889997754333222 2
Q ss_pred CcceeEEEEEEeC
Q 046488 462 DREVFFSAVLEKP 474 (480)
Q Consensus 462 ~~E~~lsav~qKP 474 (480)
++-..+.++++.+
T Consensus 277 ~~h~~v~~~~~~~ 289 (293)
T PTZ00146 277 RDHAVVIGVYRPV 289 (293)
T ss_pred CCcEEEEEEEcCC
Confidence 2344445555544
No 71
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.90 E-value=6.3e-09 Score=101.25 Aligned_cols=96 Identities=9% Similarity=-0.080 Sum_probs=69.8
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCC------------------CeeeecccCCCCC-CCc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLV------------------PLYITINQRVPFF-DNT 387 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgli------------------p~~~~~ae~LPFp-d~S 387 (480)
.+|||+|||.|..+..|+++|..|++++++. .+.++++.+..+ .+++++...++.. ...
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~--~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSE--LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCH--HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 3899999999999999999999999998763 344433333222 2234444444433 358
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI 425 (480)
||+|+-..+++|++.. ....++..+.++|||||++++
T Consensus 117 fd~v~D~~~~~~l~~~-~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIALPEE-MRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhCCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence 9999988888887644 347899999999999997554
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.90 E-value=1.3e-08 Score=86.89 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=65.4
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC--CCeeeecccC-CCCCCCccc
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL--VPLYITINQR-VPFFDNTLD 389 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae~-LPFpd~SFD 389 (480)
+.+.+.++ .+|||+|||+|.++..++++ +..+++++++.... +...++..+. +.+..+.... ++...++||
T Consensus 13 ~~~~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 13 SKLRLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred HHcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 34445444 38999999999999999886 45778887653211 1111222222 2222233332 444457999
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+|++.....+ ...++.++.|+|||||+|++.
T Consensus 91 ~v~~~~~~~~------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGGL------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcchh------HHHHHHHHHHHcCCCCEEEEE
Confidence 9998664432 246899999999999999875
No 73
>PRK14968 putative methyltransferase; Provisional
Probab=98.89 E-value=2.2e-08 Score=92.15 Aligned_cols=121 Identities=20% Similarity=0.161 Sum_probs=76.8
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC----CCeeeecccCCCCCCCccchheecccccCc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL----VPLYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl----ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.+|||+|||+|.++..+++++..+++++.+... .+...+...+. +.+...+... ++.+++||+|+++..+.+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~ 103 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPT 103 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCC
Confidence 479999999999999999888888888765211 11112222222 3333333222 3456699999986543321
Q ss_pred c------------------ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488 401 I------------------DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 401 ~------------------d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl 450 (480)
. ....+..++.++.++|||||.+++.... ....+.+.++++..||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 104 EEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS--LTGEDEVLEYLEKLGFEAE 169 (188)
T ss_pred CchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc--cCCHHHHHHHHHHCCCeee
Confidence 1 0222356899999999999998775321 1223456778888898754
No 74
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.4e-08 Score=103.49 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=79.7
Q ss_pred CCeEEEECCCCcHHHHHHhhCCCE-EEEEecCCCh--hHHHHHHHhCCCCe--eeecccCCCCCC-CccchheecccccC
Q 046488 326 IRIGLDFSIGTGTFAARMREFNVT-LVSAIINLGA--PFNEMIALRGLVPL--YITINQRVPFFD-NTLDLIHTTRFLDG 399 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~--~~~~~iA~rglip~--~~~~ae~LPFpd-~SFDlV~ss~vL~h 399 (480)
.++|||+|||+|.++.+.++.|+. ++++|+|..+ .+.+++ +.+.++. .......+..+. +.||+|+++- |-+
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa-~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA~ 240 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENA-RLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LAE 240 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHH-HHcCCchhhhcccccchhhcccCcccEEEehh-hHH
Confidence 358999999999999999999875 8888887321 112222 2333442 222233344455 5999999864 322
Q ss_pred ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488 400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW 452 (480)
Q Consensus 400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W 452 (480)
. +..+..++.+.|||||++++++..... .+...+.+.+.||.-...
T Consensus 241 ---v--l~~La~~~~~~lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 241 ---V--LVELAPDIKRLLKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEV 286 (300)
T ss_pred ---H--HHHHHHHHHHHcCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEE
Confidence 1 246899999999999999999866443 345666777778875543
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.88 E-value=1.2e-08 Score=98.40 Aligned_cols=132 Identities=18% Similarity=0.171 Sum_probs=79.9
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCC
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFD 385 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd 385 (480)
++..++........+|||+|||+|.++..+++. +..+++++++. .+.. .+...+. +.+..++... ++++
T Consensus 76 l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~ 152 (251)
T TIGR03534 76 LVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISP--EALAVARKNAARLGLDNVTFLQSDWFE-PLPG 152 (251)
T ss_pred HHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEECchhc-cCcC
Confidence 444444322222347999999999999999986 56778887652 2222 1112222 2333444333 4668
Q ss_pred Cccchheeccccc------CccCh-----------------hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHH
Q 046488 386 NTLDLIHTTRFLD------GWIDF-----------------VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVF 442 (480)
Q Consensus 386 ~SFDlV~ss~vL~------h~~d~-----------------~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l 442 (480)
++||+|+++--+. .+... .....++.++.++|||||.+++..-. .+.+.+.+++
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---~~~~~~~~~l 229 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---DQGEAVRALF 229 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---cHHHHHHHHH
Confidence 8999999842211 11110 01135789999999999999885322 2234566778
Q ss_pred HHcCceeeE
Q 046488 443 KMLKYKKHK 451 (480)
Q Consensus 443 ~~lGfkkl~ 451 (480)
+..||+.+.
T Consensus 230 ~~~gf~~v~ 238 (251)
T TIGR03534 230 EAAGFADVE 238 (251)
T ss_pred HhCCCCceE
Confidence 888987654
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.88 E-value=9.2e-09 Score=97.48 Aligned_cols=119 Identities=19% Similarity=0.324 Sum_probs=72.8
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCC--hhHHHHHHHhCC--CCeeeecccCCC---CCCCccchheecccc
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLG--APFNEMIALRGL--VPLYITINQRVP---FFDNTLDLIHTTRFL 397 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~--~~~~~~iA~rgl--ip~~~~~ae~LP---Fpd~SFDlV~ss~vL 397 (480)
.+|||||||+|.++..++.+ +..+++++++.. ..+...+...+. +.+..+++..++ +++++||.|++.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p- 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP- 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-
Confidence 47999999999999999886 456777776531 112222223332 334445554443 56779999997654
Q ss_pred cCccCh------hcHHHHHHHHHhcccCCcEEEEeeccCChhh-HHHHHHHHHHcC-cee
Q 046488 398 DGWIDF------VLLDFILYDWDRVLRPGGLLWIDSFFCAKED-MNDYLEVFKMLK-YKK 449 (480)
Q Consensus 398 ~h~~d~------~~l~~~L~EI~RVLKPGG~fiI~~f~~~~ed-L~~~~~~l~~lG-fkk 449 (480)
.+|.+. .....++.++.|+|||||.|++.. ..++ .+.+.+.+...+ |..
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t---d~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT---DNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe---CCHHHHHHHHHHHHhCCCeEe
Confidence 234321 011358999999999999998753 1222 233445555544 543
No 77
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.87 E-value=4.1e-08 Score=93.14 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=78.6
Q ss_pred cCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccC-CCCCCCccc
Q 046488 319 LDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQR-VPFFDNTLD 389 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~-LPFpd~SFD 389 (480)
+.+.++. +|||+|||+|.++..++.. +..+++++.+... .+.+.+...+. +.+..++... ++..++.||
T Consensus 36 l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 36 LRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred cCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 4455554 8999999999999887653 3567787765311 11112222231 2233344333 444457899
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce--eeEEEE
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK--KHKWVV 454 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk--kl~W~~ 454 (480)
+|++... ... +..++.++.|+|||||++++.. ..-+.+....+.++.+||. ...|..
T Consensus 114 ~V~~~~~---~~~---~~~~l~~~~~~LkpgG~lv~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~ 172 (198)
T PRK00377 114 RIFIGGG---SEK---LKEIISASWEIIKKGGRIVIDA--ILLETVNNALSALENIGFNLEITEVII 172 (198)
T ss_pred EEEECCC---ccc---HHHHHHHHHHHcCCCcEEEEEe--ecHHHHHHHHHHHHHcCCCeEEEEEeh
Confidence 9997432 112 2568999999999999998732 2344566777888888974 234544
No 78
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.87 E-value=1.2e-08 Score=97.56 Aligned_cols=99 Identities=25% Similarity=0.203 Sum_probs=65.0
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCcc
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTL 388 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SF 388 (480)
+.+++.++. +|||+|||+|.+++.+++. +-.+++++.+... .+.+.+...+. +.+..+++...+...++|
T Consensus 66 ~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~f 143 (205)
T PRK13944 66 ELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPF 143 (205)
T ss_pred HhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCc
Confidence 455555553 8999999999999888864 3467777765211 11222222232 234455554444456799
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
|+|++..++.+ +..++.|+|||||++++.
T Consensus 144 D~Ii~~~~~~~---------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 144 DAIIVTAAAST---------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred cEEEEccCcch---------hhHHHHHhcCcCcEEEEE
Confidence 99999877643 335788999999999874
No 79
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.87 E-value=1.7e-08 Score=101.58 Aligned_cols=113 Identities=12% Similarity=0.231 Sum_probs=71.5
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCCCCeee-ecccCCCCCCCccchheecccccCccC
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGLVPLYI-TINQRVPFFDNTLDLIHTTRFLDGWID 402 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rglip~~~-~~ae~LPFpd~SFDlV~ss~vL~h~~d 402 (480)
.+|||+|||+|.++..+++.|. .+++++++..+ .+.......+.-.... ......++.++.||+|+++....
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~---- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE---- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH----
Confidence 4899999999999999888764 67888766311 1111222222211111 11223455678999999865432
Q ss_pred hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 403 FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 403 ~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
.+..++.++.|+|||||+++++.+. .++.+.+.+.++.. |+
T Consensus 237 --~l~~ll~~~~~~LkpgG~li~sgi~--~~~~~~v~~~~~~~-f~ 277 (288)
T TIGR00406 237 --VIKELYPQFSRLVKPGGWLILSGIL--ETQAQSVCDAYEQG-FT 277 (288)
T ss_pred --HHHHHHHHHHHHcCCCcEEEEEeCc--HhHHHHHHHHHHcc-Cc
Confidence 1246899999999999999998764 23344555565553 54
No 80
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.86 E-value=3.4e-08 Score=100.54 Aligned_cols=129 Identities=20% Similarity=0.281 Sum_probs=81.8
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF 403 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~ 403 (480)
.+|||+|||||.++...+..|. .|+++|.|..+ .+.+.++..+.-. ..............||+|+++-.. +
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~~~~~~dlvvANI~~-----~ 236 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDLVEGKFDLVVANILA-----D 236 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCTCCS-EEEEEEES-H-----H
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecccccccCCEEEECCCH-----H
Confidence 4899999999999999999886 58888877432 1233333444322 222112233446999999985432 1
Q ss_pred hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEe
Q 046488 404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEK 473 (480)
Q Consensus 404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qK 473 (480)
.+..++.++.++|+|||++++++.... +.+.+.+.+++ ||+.+.... .++|. +.+++|
T Consensus 237 -vL~~l~~~~~~~l~~~G~lIlSGIl~~--~~~~v~~a~~~-g~~~~~~~~-------~~~W~-~l~~~K 294 (295)
T PF06325_consen 237 -VLLELAPDIASLLKPGGYLILSGILEE--QEDEVIEAYKQ-GFELVEERE-------EGEWV-ALVFKK 294 (295)
T ss_dssp -HHHHHHHHCHHHEEEEEEEEEEEEEGG--GHHHHHHHHHT-TEEEEEEEE-------ETTEE-EEEEEE
T ss_pred -HHHHHHHHHHHhhCCCCEEEEccccHH--HHHHHHHHHHC-CCEEEEEEE-------ECCEE-EEEEEe
Confidence 134588899999999999999988754 33455666666 887554332 14555 445665
No 81
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.84 E-value=2.5e-08 Score=95.16 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=65.7
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~ 401 (480)
.+|||+|||+|.++..|++.+..+++++++... .+.......+. +.+..+ .++..+++||+|++..+++|+.
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVG---DLESLLGRFDTVVCLDVLIHYP 141 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEc---CchhccCCcCEEEEcchhhcCC
Confidence 489999999999999999988888888765211 11112222221 222222 2666789999999999998887
Q ss_pred ChhcHHHHHHHHHhcccCCcEEEE
Q 046488 402 DFVLLDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPGG~fiI 425 (480)
++. +..++.++.+.+++|+.+.+
T Consensus 142 ~~~-~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 142 QED-AARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred HHH-HHHHHHHHHhhcCCeEEEEE
Confidence 554 46789999998866665443
No 82
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.82 E-value=1.9e-08 Score=102.84 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=80.3
Q ss_pred hcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccchhee
Q 046488 318 VLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLDLIHT 393 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~s 393 (480)
+..++++. +|||.|||||+++..++..+..+++++.+... .+...+...+. +.+..+++..+|+++++||+|++
T Consensus 177 l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~ 254 (329)
T TIGR01177 177 LARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT 254 (329)
T ss_pred HhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence 34455554 89999999999998888788888888876311 11112222232 33455678889999999999998
Q ss_pred ccccc-----Ccc-ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCc
Q 046488 394 TRFLD-----GWI-DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKY 447 (480)
Q Consensus 394 s~vL~-----h~~-d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGf 447 (480)
.--.. ... .......++.++.|+|||||++++.. ....+ +.+.++..||
T Consensus 255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~--~~~~~---~~~~~~~~g~ 309 (329)
T TIGR01177 255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV--PTRID---LESLAEDAFR 309 (329)
T ss_pred CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE--cCCCC---HHHHHhhcCc
Confidence 52110 000 11223579999999999999987742 22223 3356777888
No 83
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.82 E-value=1.1e-08 Score=101.09 Aligned_cols=101 Identities=21% Similarity=0.377 Sum_probs=70.3
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCee------eecccCCCCC--CCcc
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLY------ITINQRVPFF--DNTL 388 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~------~~~ae~LPFp--d~SF 388 (480)
.+....+++ +.++|+|||+|.-+..++++--.|+++|++ +.+.+++.+.--..+ ....+-.++. ++|.
T Consensus 26 ~ia~~~~~h-~~a~DvG~G~Gqa~~~iae~~k~VIatD~s---~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SV 101 (261)
T KOG3010|consen 26 KIASRTEGH-RLAWDVGTGNGQAARGIAEHYKEVIATDVS---EAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESV 101 (261)
T ss_pred HHHhhCCCc-ceEEEeccCCCcchHHHHHhhhhheeecCC---HHHHHHhhcCCCcccccCCccccccccccccCCCcce
Confidence 444455554 589999999997777788876677888765 445556655432222 2223334444 9999
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCc-EEEE
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGG-LLWI 425 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG-~fiI 425 (480)
|+|+|..|+ ||-+. +.++++++|||||.| .+.+
T Consensus 102 DlI~~Aqa~-HWFdl---e~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 102 DLITAAQAV-HWFDL---ERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eeehhhhhH-Hhhch---HHHHHHHHHHcCCCCCEEEE
Confidence 999999998 57665 469999999999877 5444
No 84
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.80 E-value=3.2e-08 Score=98.88 Aligned_cols=139 Identities=20% Similarity=0.259 Sum_probs=91.2
Q ss_pred hhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccc
Q 046488 310 TADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLD 389 (480)
Q Consensus 310 ~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFD 389 (480)
-.|.+|.. |...+++ ..|-|+|||-+.+|. ...-.|.++|+.. . . -.+...+..++|.+|+|.|
T Consensus 167 Pld~ii~~-ik~r~~~-~vIaD~GCGEakiA~---~~~~kV~SfDL~a---~-----~---~~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 167 PLDVIIRK-IKRRPKN-IVIADFGCGEAKIAS---SERHKVHSFDLVA---V-----N---ERVIACDMRNVPLEDESVD 230 (325)
T ss_pred hHHHHHHH-HHhCcCc-eEEEecccchhhhhh---ccccceeeeeeec---C-----C---CceeeccccCCcCccCccc
Confidence 34545543 3334454 379999999999887 2222455555421 1 0 1134455677999999999
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEE
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSA 469 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsa 469 (480)
++++...|+ ..+ +..++.|++|||||||.+||......-.+...+...+..+||...+-.. ....|...
T Consensus 231 vaV~CLSLM--gtn--~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~-------~n~~F~lf 299 (325)
T KOG3045|consen 231 VAVFCLSLM--GTN--LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV-------SNKYFTLF 299 (325)
T ss_pred EEEeeHhhh--ccc--HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh-------hcceEEEE
Confidence 999654443 322 2569999999999999999986555445666788899999997432211 23456666
Q ss_pred EEEeCC
Q 046488 470 VLEKPP 475 (480)
Q Consensus 470 v~qKP~ 475 (480)
.++|+.
T Consensus 300 efkK~~ 305 (325)
T KOG3045|consen 300 EFKKTP 305 (325)
T ss_pred EEecCC
Confidence 778875
No 85
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.78 E-value=2.6e-08 Score=95.93 Aligned_cols=99 Identities=22% Similarity=0.163 Sum_probs=65.5
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccc
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLD 389 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFD 389 (480)
+.+.+.++. +|||||||+|.+++.+++. +..+++++++... .+...++..+. +.+..+++...+.+++.||
T Consensus 70 ~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 70 ELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred HHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcC
Confidence 455666664 8999999999999888875 2477888765211 11112222232 3344555555555678999
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+|++...+.+ +..++.+.|||||++++.
T Consensus 148 ~I~~~~~~~~---------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 148 RIYVTAAGPD---------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred EEEECCCccc---------chHHHHHhhCCCcEEEEE
Confidence 9998766533 234677899999998874
No 86
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=7.6e-08 Score=95.26 Aligned_cols=156 Identities=15% Similarity=0.217 Sum_probs=98.2
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC----CCEEEEEecCCChhHHHHHHHhC------CCCeeeec---ccCCCC
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF----NVTLVSAIINLGAPFNEMIALRG------LVPLYITI---NQRVPF 383 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~~~~~~~iA~rg------lip~~~~~---ae~LPF 383 (480)
+++........+||+||||.|.....+.+- +..+++.+-+ +.+.+...... ....+.+. .-.-|.
T Consensus 63 el~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfs--p~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~ 140 (264)
T KOG2361|consen 63 ELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFS--PRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPP 140 (264)
T ss_pred HhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCC--hHHHHHHHhccccchhhhcccceeccchhccCCC
Confidence 455544333337999999999988877764 2556655533 23333222211 11222222 224567
Q ss_pred CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh--------------------hh-------HH
Q 046488 384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK--------------------ED-------MN 436 (480)
Q Consensus 384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------------------ed-------L~ 436 (480)
..+++|+|++.++|.-+.+. .+..++..++|+|||||.+++.+|..-. +. .+
T Consensus 141 ~~~svD~it~IFvLSAi~pe-k~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~e 219 (264)
T KOG2361|consen 141 EEGSVDIITLIFVLSAIHPE-KMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEE 219 (264)
T ss_pred CcCccceEEEEEEEeccChH-HHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHH
Confidence 89999999999999877644 4688999999999999999987432211 10 24
Q ss_pred HHHHHHHHcCceeeEEEE------eeccCCCCcceeEEEEEEeCC
Q 046488 437 DYLEVFKMLKYKKHKWVV------VPKRDKDDREVFFSAVLEKPP 475 (480)
Q Consensus 437 ~~~~~l~~lGfkkl~W~~------~~k~d~~~~E~~lsav~qKP~ 475 (480)
++.+++...||....-.+ ..+..-...-+.+-++|+||.
T Consensus 220 eL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 220 ELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL 264 (264)
T ss_pred HHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence 567889999997543211 111112456677889999984
No 87
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.75 E-value=3.3e-08 Score=94.88 Aligned_cols=99 Identities=24% Similarity=0.149 Sum_probs=63.5
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhCC---CEEEEEecCCC--hhHHHHHHHhCC--CCeeeecccCCCCCCCccc
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFN---VTLVSAIINLG--APFNEMIALRGL--VPLYITINQRVPFFDNTLD 389 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~--~~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFD 389 (480)
+.+.+.++. +|||+|||+|.+++.|++.. ..+++++.+.. ..+...+...+. +.+..++........+.||
T Consensus 71 ~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 71 ELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred HHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCC
Confidence 455666654 89999999999999998762 24777775521 111122222232 3344455444434457899
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+|++.....+ +..++.+.|||||++++.
T Consensus 149 ~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 149 RIYVTAAGPK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred EEEEcCCccc---------ccHHHHHhcCcCcEEEEE
Confidence 9998765432 445688999999998874
No 88
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.73 E-value=7.7e-08 Score=99.64 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=65.0
Q ss_pred eEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCcc--
Q 046488 328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI-- 401 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~-- 401 (480)
+|||+|||+|.++..++++ +..+++++++..+- +...++..+ +....-...-+...++.||+|+|+-.+|...
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~~ 277 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-LEGEVFASNVFSDIKGRFDMIISNPPFHDGIQT 277 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCEEEEcccccccCCCccEEEECCCccCCccc
Confidence 6999999999999999986 35777777652111 111222222 3222111122333478999999988776432
Q ss_pred ChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 402 DFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+....+.++.++.|.|||||.++|..
T Consensus 278 ~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 278 SLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 22334679999999999999998863
No 89
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=3.7e-07 Score=96.84 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=90.8
Q ss_pred hhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCCh--hHHHHHHHhCC-CCeeeecccCCC--C
Q 046488 311 ADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGA--PFNEMIALRGL-VPLYITINQRVP--F 383 (480)
Q Consensus 311 ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~--~~~~~iA~rgl-ip~~~~~ae~LP--F 383 (480)
+..++...++..++. +|||+|||+|..+..++++. ..+++++.+... .+...+...|. +.+..+++..++ +
T Consensus 232 ~s~~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 232 AAQLAATLLAPQNGE--RVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHHHHcCCCCCC--EEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc
Confidence 344555667766664 89999999999999998863 577777765311 11112222221 223344555443 3
Q ss_pred CCCccchhee----cc--cccC-----cc-Chh-------cHHHHHHHHHhcccCCcEEEEeec-cCChhhHHHHHHHHH
Q 046488 384 FDNTLDLIHT----TR--FLDG-----WI-DFV-------LLDFILYDWDRVLRPGGLLWIDSF-FCAKEDMNDYLEVFK 443 (480)
Q Consensus 384 pd~SFDlV~s----s~--vL~h-----~~-d~~-------~l~~~L~EI~RVLKPGG~fiI~~f-~~~~edL~~~~~~l~ 443 (480)
.+++||.|++ +. ++.+ |. ... ....++.++.++|||||+++++.. ....+..+.+...++
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~ 389 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA 389 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH
Confidence 4678999994 22 1111 11 111 113689999999999999998753 222333344445555
Q ss_pred Hc-CceeeE--------EEEeeccCCCCcceeEEEEEEe
Q 046488 444 ML-KYKKHK--------WVVVPKRDKDDREVFFSAVLEK 473 (480)
Q Consensus 444 ~l-Gfkkl~--------W~~~~k~d~~~~E~~lsav~qK 473 (480)
+. +|+.+. +.+.+.. ...+.|+.|.++|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~P~~--~~~dGff~a~l~k 426 (427)
T PRK10901 390 RHPDAELLDTGTPQQPGRQLLPGE--EDGDGFFYALLIK 426 (427)
T ss_pred hCCCCEEecCCCCCCCceEECCCC--CCCCCeEEEEEEE
Confidence 43 343222 2232221 2356788888887
No 90
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.70 E-value=4.1e-08 Score=90.60 Aligned_cols=57 Identities=23% Similarity=0.180 Sum_probs=49.7
Q ss_pred CCeeeecccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488 371 VPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC 430 (480)
Q Consensus 371 ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~ 430 (480)
+.+..++++.+|+++++||+|++.++++++.++ ..+++|++|+|||||.|++.+|..
T Consensus 28 i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR---LRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred eEEEEechhhCCCCCCCeeEEEecchhhcCCCH---HHHHHHHHHHcCcCeEEEEEECCC
Confidence 456678899999999999999999999988776 469999999999999999886543
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=98.69 E-value=2e-07 Score=89.97 Aligned_cols=117 Identities=17% Similarity=0.096 Sum_probs=70.1
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCC-CCeeeecccCCCCCCCccchheecccccCc
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGL-VPLYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgl-ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.+|||+|||+|.++..++..+. .+++++.+. .+.. .+...+. +.++.++... .+++++||+|+++--..+-
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISR--RAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 4899999999999999988765 777877653 2222 2222222 2223333322 3467899999986322211
Q ss_pred cC------------------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 401 ID------------------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 401 ~d------------------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
.. ...+..++.++.++|||||.+++..-.. .+...+...++..||.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~--~~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL--SGVERTLTRLSEAGLD 178 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--cCHHHHHHHHHHCCCC
Confidence 00 0113567889999999999998742111 1233445556666654
No 92
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.68 E-value=4.1e-08 Score=83.92 Aligned_cols=96 Identities=27% Similarity=0.271 Sum_probs=66.0
Q ss_pred eEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHHHHHHh-----CC---CCeeeecccCCC--CCCCccchheeccc
Q 046488 328 IGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNEMIALR-----GL---VPLYITINQRVP--FFDNTLDLIHTTRF 396 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~~iA~r-----gl---ip~~~~~ae~LP--Fpd~SFDlV~ss~v 396 (480)
+|||+|||+|.++..+++.+ ..+++++++. ....++++ +. +.++.++...++ +++++||+|+++--
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~---~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDP---EAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSH---HHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECH---HHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 79999999999999999887 8888988773 33333322 21 345556655544 78999999999754
Q ss_pred ccCccC-----hhcHHHHHHHHHhcccCCcEEEEe
Q 046488 397 LDGWID-----FVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 397 L~h~~d-----~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+..... ......++.++.|+|||||.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 443211 112356899999999999998874
No 93
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.68 E-value=9.8e-08 Score=100.24 Aligned_cols=112 Identities=12% Similarity=0.039 Sum_probs=70.2
Q ss_pred chhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHH-----hCC-----CCeeee
Q 046488 309 LTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIAL-----RGL-----VPLYIT 376 (480)
Q Consensus 309 ~~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~-----rgl-----ip~~~~ 376 (480)
.|+.+++.. |+...+ .+|||+|||+|.++..++++ +..++.+|.+. .....++ .+. +.++.+
T Consensus 215 ~GtrllL~~-lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~---~Av~~A~~N~~~n~~~~~~~v~~~~~ 288 (378)
T PRK15001 215 IGARFFMQH-LPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP---MAVASSRLNVETNMPEALDRCEFMIN 288 (378)
T ss_pred hHHHHHHHh-CCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEEECCH---HHHHHHHHHHHHcCcccCceEEEEEc
Confidence 356655543 332222 37999999999999999887 46788887662 2222222 111 122333
Q ss_pred cccCCCCCCCccchheecccccCc--cChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 377 INQRVPFFDNTLDLIHTTRFLDGW--IDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 377 ~ae~LPFpd~SFDlV~ss~vL~h~--~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
++.. .+++.+||+|+|+--++.. ........++.++.|+|||||.|++..
T Consensus 289 D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 289 NALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3211 1345689999997555422 122223678999999999999999874
No 94
>PLN03075 nicotianamine synthase; Provisional
Probab=98.67 E-value=1.4e-07 Score=96.23 Aligned_cols=100 Identities=12% Similarity=-0.007 Sum_probs=64.7
Q ss_pred CCeEEEECCCCcHHHHH-Hh-hC--CCEEEEEecCCChhH-HHHHH-H-hC---CCCeeeecccCCCCCCCccchheecc
Q 046488 326 IRIGLDFSIGTGTFAAR-MR-EF--NVTLVSAIINLGAPF-NEMIA-L-RG---LVPLYITINQRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~-La-e~--gV~Vv~vd~d~~~~~-~~~iA-~-rg---lip~~~~~ae~LPFpd~SFDlV~ss~ 395 (480)
.++|+|||||.|.+++. ++ .+ +..++++|.+..+.. ..+.+ . .+ .+.+..+++..++-..+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 46899999998865443 33 22 456778887632211 11222 1 12 2445555544443235789999998
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
++++|..... ..++..+.|+|||||++++..
T Consensus 203 ALi~~dk~~k-~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEK-VKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccH-HHHHHHHHHhcCCCcEEEEec
Confidence 8988853222 679999999999999998864
No 95
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.66 E-value=6.1e-08 Score=102.07 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=68.0
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCC--ChhHHHHHHHhCCCC--eeeecccCC--CCCCCccchheeccccc
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINL--GAPFNEMIALRGLVP--LYITINQRV--PFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~--~~~~~~~iA~rglip--~~~~~ae~L--PFpd~SFDlV~ss~vL~ 398 (480)
..+||||||+|.++..++.+ +..+++++++. ...+..++...+.-+ ++.+++..+ ++++++||.|++.+. .
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-d 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-V 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-C
Confidence 48999999999999999987 46778887652 112223334444323 344555443 578999999998654 3
Q ss_pred CccChh----cHHHHHHHHHhcccCCcEEEEe
Q 046488 399 GWIDFV----LLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 399 h~~d~~----~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+|.... ....++.++.|+|||||.+.+.
T Consensus 203 PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 203 PWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 554221 1146899999999999999884
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.66 E-value=1.1e-07 Score=75.58 Aligned_cols=97 Identities=25% Similarity=0.254 Sum_probs=64.1
Q ss_pred eEEEECCCCcHHHHHHhh-CCCEEEEEecCCChhHHHH-HHHhCC---CCeeeecccCCC-CCCCccchheecccccCcc
Q 046488 328 IGLDFSIGTGTFAARMRE-FNVTLVSAIINLGAPFNEM-IALRGL---VPLYITINQRVP-FFDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~-iA~rgl---ip~~~~~ae~LP-Fpd~SFDlV~ss~vL~h~~ 401 (480)
++||+|||+|.++..+++ .+..+++++++.......+ ...... +..+.......+ ...+.||+|++..+++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 489999999999999987 4667777776532111111 111111 223334433333 3578899999998887632
Q ss_pred ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 402 DFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
. ....++..+.+.|||||++++.
T Consensus 81 ~--~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 E--DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--HHHHHHHHHHHHcCCCCEEEEE
Confidence 2 2267999999999999999875
No 97
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=3.7e-07 Score=97.05 Aligned_cols=159 Identities=21% Similarity=0.239 Sum_probs=93.5
Q ss_pred hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHhCC--CCeeeecccCCC--
Q 046488 312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALRGL--VPLYITINQRVP-- 382 (480)
Q Consensus 312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~rgl--ip~~~~~ae~LP-- 382 (480)
..++...++..+|. +|||+|||+|..+..+++. ...+++++.+.. ..+...+...|. +.+..+++..++
T Consensus 241 s~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 241 AQLVAPLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred HHHHHHHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 33455566666664 8999999999999988875 246777766421 112222333332 223344555555
Q ss_pred --CCCCccchheec------ccccCccC------hhc-------HHHHHHHHHhcccCCcEEEEeeccCCh-hhHHHHHH
Q 046488 383 --FFDNTLDLIHTT------RFLDGWID------FVL-------LDFILYDWDRVLRPGGLLWIDSFFCAK-EDMNDYLE 440 (480)
Q Consensus 383 --Fpd~SFDlV~ss------~vL~h~~d------~~~-------l~~~L~EI~RVLKPGG~fiI~~f~~~~-edL~~~~~ 440 (480)
+.+++||.|++. .++.+.++ +.. ...+|.++.++|||||+++.+...-.. +....+..
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~ 398 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQ 398 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHH
Confidence 567899999952 23333222 000 146899999999999999887533323 33444556
Q ss_pred HHHHc-CceeeEEE--EeeccCCCCcceeEEEEEEeC
Q 046488 441 VFKML-KYKKHKWV--VVPKRDKDDREVFFSAVLEKP 474 (480)
Q Consensus 441 ~l~~l-Gfkkl~W~--~~~k~d~~~~E~~lsav~qKP 474 (480)
.+++. +|+..... ..+.. ...+.|+.|.++|.
T Consensus 399 ~l~~~~~~~~~~~~~~~~P~~--~~~dGfF~a~l~k~ 433 (434)
T PRK14901 399 FLARHPDWKLEPPKQKIWPHR--QDGDGFFMAVLRKK 433 (434)
T ss_pred HHHhCCCcEecCCCCccCCCC--CCCCcEEEEEEEeC
Confidence 66664 34422110 11111 23588999999985
No 98
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.62 E-value=5.8e-08 Score=95.68 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=90.8
Q ss_pred HHHhcC-CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCC-eeeecccCC-C-CCCCccch
Q 046488 315 IPEVLD-IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVP-LYITINQRV-P-FFDNTLDL 390 (480)
Q Consensus 315 I~~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip-~~~~~ae~L-P-Fpd~SFDl 390 (480)
+.+++. ...|..+++||+|||||.++..|..+--...+++++ ..|..+...+++.. .+++.+..+ + ..++.||+
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS--~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDIS--ENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchh--HHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 334443 445668999999999999999998874445555543 35666666666543 233333322 2 45788999
Q ss_pred heecccccCccChhcHHHHHHHHHhcccCCcEEEEee-----c--cCChhhH-----HH-HHHHHHHcCceeeEEE
Q 046488 391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS-----F--FCAKEDM-----ND-YLEVFKMLKYKKHKWV 453 (480)
Q Consensus 391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~-----f--~~~~edL-----~~-~~~~l~~lGfkkl~W~ 453 (480)
|.+..+|..+..- +.++.-+.+.|.|||.|.++. + |.-.+.. +. +..+++..|+..+.-.
T Consensus 192 i~AaDVl~YlG~L---e~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 192 IVAADVLPYLGAL---EGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred hhhhhHHHhhcch---hhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 9999999877654 569999999999999999972 1 1111111 22 3478888899877543
No 99
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.62 E-value=7e-07 Score=94.61 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=88.9
Q ss_pred hhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCCCCeee----ecccCCC
Q 046488 311 ADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGLVPLYI----TINQRVP 382 (480)
Q Consensus 311 ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rglip~~~----~~ae~LP 382 (480)
+..++...|+..++. +|||+|||+|..+..+++. +..+++++.+... .+...+...| +...+ ++...++
T Consensus 226 ~s~~~~~~L~~~~g~--~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 226 SAQWVATWLAPQNEE--TILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPS 302 (426)
T ss_pred HHHHHHHHhCCCCCC--eEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecccccccc
Confidence 344555677766664 8999999999999988875 3567777765311 1122222223 33211 2233334
Q ss_pred C--CCCccchheec------ccccCccC------hh-------cHHHHHHHHHhcccCCcEEEEeeccCCh-hhHHHHHH
Q 046488 383 F--FDNTLDLIHTT------RFLDGWID------FV-------LLDFILYDWDRVLRPGGLLWIDSFFCAK-EDMNDYLE 440 (480)
Q Consensus 383 F--pd~SFDlV~ss------~vL~h~~d------~~-------~l~~~L~EI~RVLKPGG~fiI~~f~~~~-edL~~~~~ 440 (480)
+ ++++||.|++. .++.+.++ +. ....+|.++.|+|||||+++++...-.. +.-..+..
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~ 382 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKA 382 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHH
Confidence 3 57889999852 33433222 00 0146899999999999999988533222 22233334
Q ss_pred HHHHc-CceeeEE------------EEeeccCCCCcceeEEEEEEe
Q 046488 441 VFKML-KYKKHKW------------VVVPKRDKDDREVFFSAVLEK 473 (480)
Q Consensus 441 ~l~~l-Gfkkl~W------------~~~~k~d~~~~E~~lsav~qK 473 (480)
++++. +|. +.| ...+.. ...+.|+.|.++|
T Consensus 383 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~P~~--~~~dGff~a~l~k 425 (426)
T TIGR00563 383 FLQEHPDFP-FEKTGTPEQVRDGGLQILPHA--EEGDGFFYAKLIK 425 (426)
T ss_pred HHHhCCCCe-eccCCCccccCCCcEEECCCC--CCCCCeEEEEEEe
Confidence 44443 232 122 111111 2357888999887
No 100
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.61 E-value=6.9e-07 Score=89.06 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=87.0
Q ss_pred CCCchhhhhHH-HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh-----C---CCCee
Q 046488 306 ITNLTADFLIP-EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR-----G---LVPLY 374 (480)
Q Consensus 306 ~~~~~ad~~I~-~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r-----g---lip~~ 374 (480)
+++.+.|..+- ...... . ..+|||+|||+|..+..++++ .+.++++.++. .....|.+ + .+.++
T Consensus 26 ~~~~~~DaiLL~~~~~~~-~-~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~---~~a~~A~~nv~ln~l~~ri~v~ 100 (248)
T COG4123 26 GFRYGTDAILLAAFAPVP-K-KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE---EAAEMAQRNVALNPLEERIQVI 100 (248)
T ss_pred ccccccHHHHHHhhcccc-c-CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH---HHHHHHHHHHHhCcchhceeEe
Confidence 35555665332 222222 2 568999999999999999987 37788887652 22223322 2 23445
Q ss_pred eecccCC--CCCCCccchheecc---------------cccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHH
Q 046488 375 ITINQRV--PFFDNTLDLIHTTR---------------FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMND 437 (480)
Q Consensus 375 ~~~ae~L--PFpd~SFDlV~ss~---------------vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~ 437 (480)
.++...+ +..-.+||+|+|+= .+.++.....++.+++-..++|||||++.+.+ ..+.+.+
T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---r~erl~e 177 (248)
T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH---RPERLAE 177 (248)
T ss_pred hhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe---cHHHHHH
Confidence 5553322 22334899999961 11122223345778999999999999998753 3455677
Q ss_pred HHHHHHHcCceeeEEE
Q 046488 438 YLEVFKMLKYKKHKWV 453 (480)
Q Consensus 438 ~~~~l~~lGfkkl~W~ 453 (480)
+.+.+++.+|...+..
T Consensus 178 i~~~l~~~~~~~k~i~ 193 (248)
T COG4123 178 IIELLKSYNLEPKRIQ 193 (248)
T ss_pred HHHHHHhcCCCceEEE
Confidence 7888888777654433
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.61 E-value=5.7e-07 Score=84.98 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=69.9
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeeccc-CCCCCCC
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQ-RVPFFDN 386 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae-~LPFpd~ 386 (480)
.+-..+.+.++. +|||+|||+|.++..++.. +..+++++++... .+...+...+. +.+..+++. .++....
T Consensus 31 ~l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 31 LLISQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCC
Confidence 334455555553 8999999999999988754 4678888765211 11122222232 223334332 2333233
Q ss_pred ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcC
Q 046488 387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLK 446 (480)
Q Consensus 387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lG 446 (480)
.+|.++... .. .+..++.++.|+|||||++++.... .+++....+.++.++
T Consensus 109 ~~d~v~~~~-----~~--~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 109 APDRVCIEG-----GR--PIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLAQLQ 159 (196)
T ss_pred CCCEEEEEC-----Cc--CHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHHhcC
Confidence 456655321 11 2356899999999999999886532 333334445555543
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.60 E-value=4.8e-07 Score=88.89 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=73.0
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh----CC---CCeeeecccCCCCCCCccchheecccc
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR----GL---VPLYITINQRVPFFDNTLDLIHTTRFL 397 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r----gl---ip~~~~~ae~LPFpd~SFDlV~ss~vL 397 (480)
.+|||+|||+|.++..++.. ...+++++++. .+.. .+.+ +. +.+..++.. -++++++||+|+++--.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~--~~l~-~a~~n~~~~~~~~i~~~~~d~~-~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISP--EALA-VARRNAKHGLGARVEFLQGDWF-EPLPGGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH--HHHH-HHHHHHHhCCCCcEEEEEcccc-CcCCCCceeEEEECCCc
Confidence 47999999999999999876 36778887653 2222 2211 11 223333321 13346899999984211
Q ss_pred cC------ccC-----------------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488 398 DG------WID-----------------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW 452 (480)
Q Consensus 398 ~h------~~d-----------------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W 452 (480)
.. ..+ ......++.++.++|||||++++..-. ...+.+..+++..||..+.+
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHHHHHHHhCCCceeEE
Confidence 10 000 011245788899999999999885321 22244667788889986655
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.59 E-value=2.7e-07 Score=88.07 Aligned_cols=98 Identities=22% Similarity=0.156 Sum_probs=62.3
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCccch
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTLDL 390 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SFDl 390 (480)
+.+++.++ .+|||+|||+|.++..|++....+++++.+. .+.. .++..+. +.+..++........+.||+
T Consensus 72 ~~l~~~~~--~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 72 ELLELKPG--DRVLEIGTGSGYQAAVLAHLVRRVFSVERIK--TLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HhcCCCCC--CEEEEECCCccHHHHHHHHHhCEEEEEeCCH--HHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCE
Confidence 45555555 3899999999999998887755677777652 2222 2222232 23333443221113478999
Q ss_pred heecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|++...+.+ +..++.+.|+|||.+++..
T Consensus 148 I~~~~~~~~---------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 148 ILVTAAAPE---------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEEccCchh---------hhHHHHHhcCCCcEEEEEE
Confidence 998765433 3456789999999988853
No 104
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.59 E-value=4.3e-07 Score=93.31 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=72.8
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC------------CCeeeecccCCCCCCCccchheec
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL------------VPLYITINQRVPFFDNTLDLIHTT 394 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl------------ip~~~~~ae~LPFpd~SFDlV~ss 394 (480)
.+|||+|||+|.++..++++|..++++|++. .+.. .++++. +.+... .++..+++||+|+|.
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~--~ml~-~A~~~~~~~~~~~~~~~~~~f~~~---Dl~~l~~~fD~Vv~~ 219 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGAIVSASDISA--AMVA-EAERRAKEALAALPPEVLPKFEAN---DLESLSGKYDTVTCL 219 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCCEEEEEECCH--HHHH-HHHHHHHhcccccccccceEEEEc---chhhcCCCcCEEEEc
Confidence 4899999999999999999998898888763 3332 221110 111122 233347899999999
Q ss_pred ccccCccChhcHHHHHHHHHhcccCCcEEEEee---c-----------cCChh--------hHHHHHHHHHHcCceee
Q 046488 395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS---F-----------FCAKE--------DMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~---f-----------~~~~e--------dL~~~~~~l~~lGfkkl 450 (480)
.+++|+++.. ...++..+.+ +.+||.++... + +.... ..+++.++++..||+..
T Consensus 220 ~vL~H~p~~~-~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 220 DVLIHYPQDK-ADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVA 295 (315)
T ss_pred CEEEecCHHH-HHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEE
Confidence 9999887643 2445666665 45666644321 0 00000 13457788888898854
No 105
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.56 E-value=6.6e-07 Score=86.86 Aligned_cols=99 Identities=24% Similarity=0.356 Sum_probs=65.4
Q ss_pred eEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh-hHHH-HHHHhCC----CCeeeecccC-CCC------CCCccchhe
Q 046488 328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLGA-PFNE-MIALRGL----VPLYITINQR-VPF------FDNTLDLIH 392 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~-~~~~-~iA~rgl----ip~~~~~ae~-LPF------pd~SFDlV~ 392 (480)
+||+||+|||.-+.+++.+ .++.--.+++... .... -++..+. .|..++.... .|. ..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 6999999999999999886 4444344443322 1111 1233332 2344444332 333 477999999
Q ss_pred ecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|..++| +......+.+|.++.++|+|||.|++-+
T Consensus 108 ~~N~lH-I~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 108 CINMLH-ISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ehhHHH-hcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 999875 4444444789999999999999999864
No 106
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.56 E-value=7.1e-07 Score=88.87 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=69.6
Q ss_pred hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCC
Q 046488 312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFF 384 (480)
Q Consensus 312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFp 384 (480)
..+...+|+..++. +|||+|||+|..+..+++. .-.+++++.+... .+...+.+.+. +.+...++..++..
T Consensus 60 s~~~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~ 137 (264)
T TIGR00446 60 SMIPPLALEPDPPE--RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA 137 (264)
T ss_pred HHHHHHHhCCCCcC--EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh
Confidence 33444566766664 8999999999999888774 2367777765211 11223333332 22333445566666
Q ss_pred CCccchheec------ccccC-------ccCh------hcHHHHHHHHHhcccCCcEEEEee
Q 046488 385 DNTLDLIHTT------RFLDG-------WIDF------VLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 385 d~SFDlV~ss------~vL~h-------~~d~------~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
.+.||.|++. .++.+ |.+. .....+|.++.+.|||||+++.+.
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 6789999852 12211 1110 011358999999999999998874
No 107
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.56 E-value=1.6e-07 Score=91.16 Aligned_cols=99 Identities=21% Similarity=0.172 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCcc
Q 046488 324 GEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 324 g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~ 401 (480)
...++|||||+|+|.++..++++ +..++..|+- ...+.......+...-++.. -|+|. +|+++..++||+|.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLP---EVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-H---HHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccH---hhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 34578999999999999999886 6676666541 22222222334555555533 44545 99999999999998
Q ss_pred ChhcHHHHHHHHHhcccCC--cEEEEeecc
Q 046488 402 DFVLLDFILYDWDRVLRPG--GLLWIDSFF 429 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPG--G~fiI~~f~ 429 (480)
+... ..+|+.+++.|+|| |+++|.++.
T Consensus 173 d~~~-~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 173 DEDC-VKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp HHHH-HHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hHHH-HHHHHHHHHHhCCCCCCeEEEEeec
Confidence 7654 77999999999999 999998654
No 108
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=1.1e-06 Score=93.56 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=87.9
Q ss_pred hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCC--
Q 046488 312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVP-- 382 (480)
Q Consensus 312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LP-- 382 (480)
..++...+.+.++. +|||+|||+|.++..++++ +..+++++++... .+...+...|. +.+..+++..++
T Consensus 239 s~lv~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~ 316 (444)
T PRK14902 239 SMLVAPALDPKGGD--TVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK 316 (444)
T ss_pred HHHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch
Confidence 33555666666654 8999999999999988874 3567777765311 11222222232 233444444432
Q ss_pred CCCCccchheecc------cccCccC------hhc-------HHHHHHHHHhcccCCcEEEEeeccC-ChhhHHHHHHHH
Q 046488 383 FFDNTLDLIHTTR------FLDGWID------FVL-------LDFILYDWDRVLRPGGLLWIDSFFC-AKEDMNDYLEVF 442 (480)
Q Consensus 383 Fpd~SFDlV~ss~------vL~h~~d------~~~-------l~~~L~EI~RVLKPGG~fiI~~f~~-~~edL~~~~~~l 442 (480)
++ ++||+|++.- .+.+.++ ... ...++.++.|+|||||.++++.-.- ..+....+...+
T Consensus 317 ~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l 395 (444)
T PRK14902 317 FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL 395 (444)
T ss_pred hc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence 33 7899998631 1111110 111 1357999999999999998763211 112222334455
Q ss_pred HHc-CceeeEE-----------------EEeeccCCCCcceeEEEEEEeC
Q 046488 443 KML-KYKKHKW-----------------VVVPKRDKDDREVFFSAVLEKP 474 (480)
Q Consensus 443 ~~l-Gfkkl~W-----------------~~~~k~d~~~~E~~lsav~qKP 474 (480)
++. .|+.+.. .+.+.. ...+.|+.|+++|.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~--~~~dGfF~a~l~k~ 443 (444)
T PRK14902 396 EEHPEFELVPLQHEKPDELVYEVKDGYLQILPND--YGTDGFFIAKLRKK 443 (444)
T ss_pred HhCCCcEEecccccccccccccccCCeEEECCCC--CCCCCeEEEEEEEC
Confidence 554 2543321 111111 23578899999884
No 109
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.53 E-value=2.1e-07 Score=86.42 Aligned_cols=96 Identities=25% Similarity=0.290 Sum_probs=60.9
Q ss_pred CeEEEECCCCcHHHHHHhhCCC--EEEEEecCCChhHHH----HHHHhCC--CCeeeec-ccCCCCCCCccchheecccc
Q 046488 327 RIGLDFSIGTGTFAARMREFNV--TLVSAIINLGAPFNE----MIALRGL--VPLYITI-NQRVPFFDNTLDLIHTTRFL 397 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~-ae~LPFpd~SFDlV~ss~vL 397 (480)
.+|||+|||+|.++..+++++. .++.++.+. .+.. .+...+. +.++..+ .+.++ ++.||+|+|+=-+
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~--~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINP--DALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPPF 108 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBH--HHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---S
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccch
Confidence 4799999999999999998744 477777652 2221 2222222 2233333 34343 7999999997443
Q ss_pred cCccC--hhcHHHHHHHHHhcccCCcEEEEe
Q 046488 398 DGWID--FVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 398 ~h~~d--~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+.-.+ ...+..++.+..+.|||||.+++.
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 22211 123467899999999999999764
No 110
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=1.6e-06 Score=92.45 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=74.6
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCC
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFF 384 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFp 384 (480)
+...++...++. +|||+|||+|..+..+++. +..+++++++. .+.. .+...|. +.+..+++..++ +
T Consensus 241 l~~~~l~~~~g~--~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~--~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 241 LACLLLNPQPGS--TVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP--QKLEKIRSHASALGITIIETIEGDARSFS-P 315 (445)
T ss_pred HHHHhcCCCCCC--EEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHhCCCeEEEEeCcccccc-c
Confidence 444566665654 8999999999998887763 34777877653 2222 2222232 223344555554 5
Q ss_pred CCccchheec------ccccC-----cc-Chhc-------HHHHHHHHHhcccCCcEEEEeeccCCh-hhHHHHHHHHHH
Q 046488 385 DNTLDLIHTT------RFLDG-----WI-DFVL-------LDFILYDWDRVLRPGGLLWIDSFFCAK-EDMNDYLEVFKM 444 (480)
Q Consensus 385 d~SFDlV~ss------~vL~h-----~~-d~~~-------l~~~L~EI~RVLKPGG~fiI~~f~~~~-edL~~~~~~l~~ 444 (480)
+++||+|++. ..+.. |. .+.. ...+|.++.++|||||+++++...-.. ++.......+++
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 6789999952 11211 11 1111 135899999999999999997533322 222333445554
Q ss_pred c
Q 046488 445 L 445 (480)
Q Consensus 445 l 445 (480)
.
T Consensus 396 ~ 396 (445)
T PRK14904 396 H 396 (445)
T ss_pred C
Confidence 3
No 111
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.51 E-value=3.7e-07 Score=92.48 Aligned_cols=97 Identities=11% Similarity=-0.035 Sum_probs=63.7
Q ss_pred CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHh-----CCCC--eeeeccc-CCCCCCCc----cchh
Q 046488 327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALR-----GLVP--LYITINQ-RVPFFDNT----LDLI 391 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~r-----glip--~~~~~ae-~LPFpd~S----FDlV 391 (480)
.+|||+|||||..+..|++. +..++++|++. .++...+.+ ..+. .+.++.. .++++... ..++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~--~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISA--DALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCH--HHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 47999999999999999876 57888887653 444333222 1222 2345533 34554433 3344
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
++...+.++... ....+|++++++|+|||.|+|.
T Consensus 143 ~~gs~~~~~~~~-e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFTPE-EAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCCHH-HHHHHHHHHHHhcCCCCEEEEe
Confidence 445566666543 3467999999999999999986
No 112
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.48 E-value=9.4e-07 Score=88.52 Aligned_cols=126 Identities=20% Similarity=0.319 Sum_probs=90.0
Q ss_pred CCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChh
Q 046488 325 EIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFV 404 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~ 404 (480)
...++||||+|-|..+..|+..--.|.++.. +..|..+.+++|. .+. . ...+.-.+..||+|.|..+|....++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~--S~~Mr~rL~~kg~-~vl-~-~~~w~~~~~~fDvIscLNvLDRc~~P~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEA--SPPMRWRLSKKGF-TVL-D-IDDWQQTDFKFDVISCLNVLDRCDRPL 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecC--CHHHHHHHHhCCC-eEE-e-hhhhhccCCceEEEeehhhhhccCCHH
Confidence 3467999999999999999987545555553 3567777777664 222 1 111322356899999999998777774
Q ss_pred cHHHHHHHHHhcccCCcEEEEee---------c-----cCChh-----------hHHHHHHHHHHcCceeeEEEEeecc
Q 046488 405 LLDFILYDWDRVLRPGGLLWIDS---------F-----FCAKE-----------DMNDYLEVFKMLKYKKHKWVVVPKR 458 (480)
Q Consensus 405 ~l~~~L~EI~RVLKPGG~fiI~~---------f-----~~~~e-----------dL~~~~~~l~~lGfkkl~W~~~~k~ 458 (480)
.+|.+|++.|+|+|+++++- + .++.+ ++..+.+.++.+||+-..|...+-.
T Consensus 169 ---~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PYL 244 (265)
T PF05219_consen 169 ---TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPYL 244 (265)
T ss_pred ---HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCcc
Confidence 69999999999999999861 1 11221 1234558999999999999887653
No 113
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.43 E-value=2e-06 Score=86.83 Aligned_cols=117 Identities=20% Similarity=0.148 Sum_probs=70.7
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccchheecc----
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTR---- 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~---- 395 (480)
.+|||+|||+|.++..++++ +..+++++.+..+- +...+...+. +.+..++... ++++++||+|+++=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVD 201 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCC
Confidence 47999999999999999986 56788887653211 1112222232 2334444321 34567899999851
Q ss_pred --cc-------cCccC---------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 396 --FL-------DGWID---------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 396 --vL-------~h~~d---------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
.+ .+.+. ......++.++.++|+|||++++.... +.+.+.+++...||.
T Consensus 202 ~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~~~~v~~~~~~~~~~ 268 (284)
T TIGR03533 202 AEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----SMEALEEAYPDVPFT 268 (284)
T ss_pred ccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHHhCCCc
Confidence 11 11110 011246789999999999999875432 113456677777764
No 114
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.43 E-value=3e-06 Score=90.22 Aligned_cols=152 Identities=16% Similarity=0.086 Sum_probs=86.2
Q ss_pred hhhhHHHhcC-CCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC-CCeeeecccCCC
Q 046488 311 ADFLIPEVLD-IKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL-VPLYITINQRVP 382 (480)
Q Consensus 311 ad~~I~~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl-ip~~~~~ae~LP 382 (480)
++.+++.++. +.++ .+|||+|||+|.++..++.. +..++++|.+. .+.+ .+...+. +.+..++.....
T Consensus 238 TE~LVe~aL~~l~~~--~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~--~ALe~AreNa~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 238 TEHLVEAVLARLPEN--GRVWDLGTGSGAVAVTVALERPDAFVRASDISP--PALETARKNAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred HHHHHHHhhhccCCC--CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence 3445555554 3333 37999999999999988864 56777877653 3322 2222221 333444432222
Q ss_pred C-CCCccchheecccccCc---------------------cC-hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHH
Q 046488 383 F-FDNTLDLIHTTRFLDGW---------------------ID-FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYL 439 (480)
Q Consensus 383 F-pd~SFDlV~ss~vL~h~---------------------~d-~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~ 439 (480)
+ .+++||+|+|+--...- .+ ......++.++.+.|+|||++++..-. .+.+.+.
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---~Q~e~V~ 390 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---DQGAAVR 390 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---cHHHHHH
Confidence 2 24689999995311100 00 011236778888999999998874432 2334566
Q ss_pred HHHHHcCceeeEEEEeeccCCCCcceeEEEEEEe
Q 046488 440 EVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEK 473 (480)
Q Consensus 440 ~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qK 473 (480)
++++..||..+.- ..|-...+.++.+.+.|
T Consensus 391 ~ll~~~Gf~~v~v----~kDl~G~dR~v~~~~~~ 420 (423)
T PRK14966 391 GVLAENGFSGVET----LPDLAGLDRVTLGKYMK 420 (423)
T ss_pred HHHHHCCCcEEEE----EEcCCCCcEEEEEEEhh
Confidence 7788888865432 22322345555555544
No 115
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.42 E-value=7.4e-07 Score=87.35 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=72.6
Q ss_pred CCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCC--eeeecccCCCCCCCccchheeccccc
Q 046488 323 PGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVP--LYITINQRVPFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 323 ~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip--~~~~~ae~LPFpd~SFDlV~ss~vL~ 398 (480)
....++|.|+|||+|..+..|+++ +..+.++| .+..|.+.. ++++.. +..++...+- ++..+|+++++.+|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiD--sS~~Mla~A-a~rlp~~~f~~aDl~~w~-p~~~~dllfaNAvlq 103 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGID--SSPAMLAKA-AQRLPDATFEEADLRTWK-PEQPTDLLFANAVLQ 103 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeecc--CCHHHHHHH-HHhCCCCceecccHhhcC-CCCccchhhhhhhhh
Confidence 344578999999999999999998 55666654 445666555 444443 3345555553 678899999999987
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
-+++. ..+|..+.--|.|||.+.+.
T Consensus 104 WlpdH---~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 104 WLPDH---PELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hcccc---HHHHHHHHHhhCCCceEEEE
Confidence 66666 46999999999999999885
No 116
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.41 E-value=4.7e-07 Score=89.44 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=74.3
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh--CCCC--eeeecccCCCCCCCccchhe
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR--GLVP--LYITINQRVPFFDNTLDLIH 392 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r--glip--~~~~~ae~LPFpd~SFDlV~ 392 (480)
.+.+++.. ...++|||||.|..+..|...||.-+.. +|.+..+....+.. ..+. ..+++.|.|+|.+++||+|+
T Consensus 65 rvfD~kk~-fp~a~diGcs~G~v~rhl~~e~vekli~-~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLii 142 (325)
T KOG2940|consen 65 RVFDCKKS-FPTAFDIGCSLGAVKRHLRGEGVEKLIM-MDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLII 142 (325)
T ss_pred HHHHHhhh-CcceeecccchhhhhHHHHhcchhheee-eecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhh
Confidence 45555543 4579999999999999999988653221 23333454443322 2222 23566899999999999999
Q ss_pred ecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
++..+ ||.++- ...+..++-.|||+|.|+-+
T Consensus 143 sSlsl-HW~NdL--Pg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 143 SSLSL-HWTNDL--PGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhh-hhhccC--chHHHHHHHhcCCCccchhH
Confidence 98887 576542 45899999999999998764
No 117
>PHA03411 putative methyltransferase; Provisional
Probab=98.40 E-value=2.1e-06 Score=86.86 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=79.0
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC--CCCeeeecccCCCCCCCccchheecccccCccC
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG--LVPLYITINQRVPFFDNTLDLIHTTRFLDGWID 402 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg--lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d 402 (480)
.+|||+|||+|.++..++.+ +..+++++.+ +...+.+++. .+.+..++...+. .+++||+|+++--+.+...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDis---p~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELN---PEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECC---HHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCc
Confidence 47999999999999888765 4678888766 2333444443 2344455555544 3578999999766655321
Q ss_pred h--h-------------c--HHHHHHHHHhcccCCcEEEEe----eccCChhhHHHHHHHHHHcCce
Q 046488 403 F--V-------------L--LDFILYDWDRVLRPGGLLWID----SFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 403 ~--~-------------~--l~~~L~EI~RVLKPGG~fiI~----~f~~~~edL~~~~~~l~~lGfk 448 (480)
. . . +...+....++|+|+|.+++. .++...-.-++|..+++..||.
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 1 0 0 246788889999999987765 1232222346788899999986
No 118
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.38 E-value=2.2e-06 Score=84.44 Aligned_cols=99 Identities=8% Similarity=-0.099 Sum_probs=74.2
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC------------------CCCeeeecccCCCCC---C
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG------------------LVPLYITINQRVPFF---D 385 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg------------------lip~~~~~ae~LPFp---d 385 (480)
.+||+.|||.|.-+..|+++|..|++++++. .+.+++.++. .+.++.++.-.++.. -
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~--~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSE--KAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCH--HHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4899999999999999999999999998763 3333332221 234455555556532 2
Q ss_pred CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
+.||+|+-..+|+++++. ....+...+.++|+|||.+++..+
T Consensus 123 ~~fD~VyDra~~~Alpp~-~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIALPND-LRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhcCCHH-HHHHHHHHHHHHhCCCcEEEEEEE
Confidence 689999988888888654 347899999999999999887654
No 119
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.37 E-value=3e-06 Score=85.15 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=71.1
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccchheecc----
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTR---- 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~---- 395 (480)
.+|||+|||+|.++..++.. +..+++++.+..+- +...+...+. +.++.++... +++++.||+|+++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 47999999999999999975 46788887653211 1111122222 2333443221 34556899999851
Q ss_pred ---------cccCccC---------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHH-HcCceeeE
Q 046488 396 ---------FLDGWID---------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFK-MLKYKKHK 451 (480)
Q Consensus 396 ---------vL~h~~d---------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~-~lGfkkl~ 451 (480)
++.|-+. ......++.++.++|+|||++++..-.... ..+.+++. ..||..+.
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~---~~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ---KSLKELLRIKFTWYDVE 266 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH---HHHHHHHHhcCCCceeE
Confidence 1111110 012356899999999999999885433222 23445555 35675543
No 120
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=2.3e-06 Score=87.36 Aligned_cols=114 Identities=23% Similarity=0.272 Sum_probs=66.9
Q ss_pred hhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCC--EEEEEecCCCh--hHHHHHHHhCCCC--eeeecccCCCC
Q 046488 310 TADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNV--TLVSAIINLGA--PFNEMIALRGLVP--LYITINQRVPF 383 (480)
Q Consensus 310 ~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~~--~~~~~iA~rglip--~~~~~ae~LPF 383 (480)
|+..++. -|+...+. +|||+|||.|-+++.|++.+- .++-+|.+.-+ -++..++..+.-. ++.++ --.+.
T Consensus 146 GS~lLl~-~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~-~~~~v 221 (300)
T COG2813 146 GSRLLLE-TLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASN-LYEPV 221 (300)
T ss_pred HHHHHHH-hCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEec-ccccc
Confidence 4444443 33433333 799999999999999998743 44444443211 1112223333322 23333 22334
Q ss_pred CCCccchheecccccCccC--hhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 384 FDNTLDLIHTTRFLDGWID--FVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 384 pd~SFDlV~ss~vL~h~~d--~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
.+ +||+|+|+==+|.-.+ ...-+.++.+..+.|++||.++|..-
T Consensus 222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 44 9999999755543221 11124689999999999999998753
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.30 E-value=1.6e-06 Score=89.30 Aligned_cols=98 Identities=21% Similarity=0.129 Sum_probs=61.7
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccc
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLD 389 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFD 389 (480)
+.++++++. +|||+|||+|.+++.+++. + ..+++++.+... .+...++..+. +....+++...+.....||
T Consensus 74 ~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 74 EWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred HhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCcc
Confidence 344565554 8999999999999999875 2 246777655211 11222222232 2233455444555557899
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI 425 (480)
+|++...+.+ ....+.++|||||.+++
T Consensus 152 ~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 152 VIFVTVGVDE---------VPETWFTQLKEGGRVIV 178 (322)
T ss_pred EEEECCchHH---------hHHHHHHhcCCCCEEEE
Confidence 9998765433 23456789999999877
No 122
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.30 E-value=3.8e-06 Score=85.79 Aligned_cols=117 Identities=19% Similarity=0.117 Sum_probs=68.9
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccchheecc----
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTR---- 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~---- 395 (480)
.+|||+|||+|.++..++.. +..+++++++..+- +...+...+. +.+..++... ++++++||+|+++=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 47999999999999999876 56788887653211 1112222232 3344444321 23467899999851
Q ss_pred --c-------ccCccC---------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 396 --F-------LDGWID---------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 396 --v-------L~h~~d---------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
. +.+.+. ......++.++.++|+|||++++..... . ..+.+++...||.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~---~~~~~~~~~~~~~ 280 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-R---VHLEEAYPDVPFT 280 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-H---HHHHHHHhhCCCE
Confidence 0 111111 0112467899999999999998853321 1 2345556555543
No 123
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.29 E-value=2.1e-05 Score=75.52 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=76.4
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHH----HHhCCCC---eeeecc-cCCCCCCC
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMI----ALRGLVP---LYITIN-QRVPFFDN 386 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~i----A~rglip---~~~~~a-e~LPFpd~ 386 (480)
..|.+.+++ +++|||||||+.+..++.. .-.+++++-+. ++.+.+ ++-+ ++ ++.+++ +.|+=.+
T Consensus 28 s~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~--~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~- 101 (187)
T COG2242 28 SKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIERNAARFG-VDNLEVVEGDAPEALPDLP- 101 (187)
T ss_pred HhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCC-
Confidence 456677775 8999999999999988833 45677776443 333322 2223 33 233442 3344333
Q ss_pred ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
+||.|+.... .+ ++.+|..+...|||||++++..- .-+.+....+.++.+|+.
T Consensus 102 ~~daiFIGGg-~~------i~~ile~~~~~l~~ggrlV~nai--tlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 102 SPDAIFIGGG-GN------IEEILEAAWERLKPGGRLVANAI--TLETLAKALEALEQLGGR 154 (187)
T ss_pred CCCEEEECCC-CC------HHHHHHHHHHHcCcCCeEEEEee--cHHHHHHHHHHHHHcCCc
Confidence 8999998765 22 24689999999999999887421 233445566788888983
No 124
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.29 E-value=4.8e-06 Score=88.77 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=71.2
Q ss_pred hhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCC-CC
Q 046488 313 FLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVP-FF 384 (480)
Q Consensus 313 ~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LP-Fp 384 (480)
.++..++++.+|. +|||+|||+|..+.++++. +..++++|++... .....+.+.|. +.+..+++..++ +.
T Consensus 227 ~~~~~~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 227 QIVPLLMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV 304 (431)
T ss_pred HHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh
Confidence 3555567776664 8999999999999888874 4577787765311 11122222232 223345555665 55
Q ss_pred CCccchheec------ccccCccC------hh-------cHHHHHHHHHhcccCCcEEEEeecc
Q 046488 385 DNTLDLIHTT------RFLDGWID------FV-------LLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 385 d~SFDlV~ss------~vL~h~~d------~~-------~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
+++||.|++. ..+..-++ .. ....+|.++.+.|||||+++.+...
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 7899999852 11211110 00 1145799999999999999887543
No 125
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.28 E-value=8.8e-06 Score=79.74 Aligned_cols=128 Identities=19% Similarity=0.132 Sum_probs=76.4
Q ss_pred CCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-----CCCCeee-ecccCCCCCCCccchheeccccc
Q 046488 325 EIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-----GLVPLYI-TINQRVPFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-----glip~~~-~~ae~LPFpd~SFDlV~ss~vL~ 398 (480)
...++||.|+|.|..+..+.-.-...|++. +....+..++... ..+..+. .-.+.+--.++.||+|++..|+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlV-Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLV-EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEE-ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEe-ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 457899999999999987754433334432 2223444444321 1222222 22555554568999999999999
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEee--------ccCChhh-----HHHHHHHHHHcCceeeEEEE
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDS--------FFCAKED-----MNDYLEVFKMLKYKKHKWVV 454 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~--------f~~~~ed-----L~~~~~~l~~lGfkkl~W~~ 454 (480)
|+.|.+ +..+|..+...|+|||+++|-. .+...+. .+.+.++++++|++-++-..
T Consensus 134 hLTD~d-lv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 134 HLTDED-LVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp GS-HHH-HHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred cCCHHH-HHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 998876 4679999999999999988852 1111111 35688999999998765433
No 126
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.27 E-value=3e-06 Score=78.39 Aligned_cols=100 Identities=10% Similarity=0.062 Sum_probs=64.7
Q ss_pred cCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccchheec
Q 046488 319 LDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLDLIHTT 394 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFDlV~ss 394 (480)
+++.++ .+|||+|||+|.++..+++++..+++++.+. .+.....++ ..+.++.+++..+++++..||.|+++
T Consensus 9 ~~~~~~--~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~--~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n 84 (169)
T smart00650 9 ANLRPG--DTVLEIGPGKGALTEELLERAARVTAIEIDP--RLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGN 84 (169)
T ss_pred cCCCCc--CEEEEECCCccHHHHHHHhcCCeEEEEECCH--HHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEEC
Confidence 344444 4899999999999999999877888888763 222222111 23445667788888888889999876
Q ss_pred ccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
--+ ++.. ..+..++.+. .+.++|.+++.
T Consensus 85 ~Py-~~~~-~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 85 LPY-NIST-PILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred CCc-ccHH-HHHHHHHhcC--CCcceEEEEEE
Confidence 433 3322 2223344332 25688888775
No 127
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.27 E-value=2.1e-06 Score=79.87 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=78.3
Q ss_pred HhcC-CCCCCCCeEEEECCCCcHHHHHHhhCC---CEEEEEecCCChhHHHHHHHhCCCCeeeec----ccCCCCCCCcc
Q 046488 317 EVLD-IKPGEIRIGLDFSIGTGTFAARMREFN---VTLVSAIINLGAPFNEMIALRGLVPLYITI----NQRVPFFDNTL 388 (480)
Q Consensus 317 ~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~~~~~~~iA~rglip~~~~~----ae~LPFpd~SF 388 (480)
+..+ +.++...+|||+||++|+|+..+.+++ ..++++|+....+.......++.+ ..... .+.++-....|
T Consensus 14 ~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~-~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 14 EKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDI-TNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp HTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGG-EEEEHSHHGGGSHGTTTCSE
T ss_pred HHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeeccc-chhhHHHhhhhhccccccCc
Confidence 3344 455556799999999999999999987 677888875432210000001111 00011 22222223799
Q ss_pred chheecccccC--------ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCC
Q 046488 389 DLIHTTRFLDG--------WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDK 460 (480)
Q Consensus 389 DlV~ss~vL~h--------~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~ 460 (480)
|+|+|..+..- ..........+.-+...|||||.|++-.|..... ..+...++. .|+.+.+........
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~--~~~~~~l~~-~F~~v~~~Kp~~sr~ 169 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI--EELIYLLKR-CFSKVKIVKPPSSRS 169 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS--HHHHHHHHH-HHHHEEEEE-TTSBT
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH--HHHHHHHHh-CCeEEEEEECcCCCC
Confidence 99998663211 1111111234445557799999988866553332 244444444 467676655443333
Q ss_pred CCcceeEEE
Q 046488 461 DDREVFFSA 469 (480)
Q Consensus 461 ~~~E~~lsa 469 (480)
...|.|+.+
T Consensus 170 ~s~E~Ylv~ 178 (181)
T PF01728_consen 170 ESSEEYLVC 178 (181)
T ss_dssp TCBEEEEES
T ss_pred CccEEEEEE
Confidence 567888864
No 128
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.25 E-value=8.5e-06 Score=80.86 Aligned_cols=134 Identities=18% Similarity=0.194 Sum_probs=76.3
Q ss_pred hhhhHHHhcCC-CC-CCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCCCCeeeecc-cCCCC
Q 046488 311 ADFLIPEVLDI-KP-GEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGLVPLYITIN-QRVPF 383 (480)
Q Consensus 311 ad~~I~~vL~l-~~-g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rglip~~~~~a-e~LPF 383 (480)
++.+++.++.. .+ ....+|||+|||+|.++..+++. +..+++++.+..+- ++..+. .....+..++. +.++-
T Consensus 70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~-~~~~~~~~~D~~~~l~~ 148 (251)
T TIGR03704 70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA-DAGGTVHEGDLYDALPT 148 (251)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCEEEEeechhhcch
Confidence 34455554432 11 12247999999999999998864 56788877653211 111121 22234444443 22321
Q ss_pred -CCCccchheeccccc--------------Ccc--------C-hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHH
Q 046488 384 -FDNTLDLIHTTRFLD--------------GWI--------D-FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYL 439 (480)
Q Consensus 384 -pd~SFDlV~ss~vL~--------------h~~--------d-~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~ 439 (480)
..+.||+|+++-=.. |.+ + .+.+..++..+.++|||||++++..-. ++...+.
T Consensus 149 ~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~v~ 225 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPLAV 225 (251)
T ss_pred hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHHHH
Confidence 135799999852111 100 0 011246778888999999999986432 2345567
Q ss_pred HHHHHcCce
Q 046488 440 EVFKMLKYK 448 (480)
Q Consensus 440 ~~l~~lGfk 448 (480)
.+++..||+
T Consensus 226 ~~l~~~g~~ 234 (251)
T TIGR03704 226 EAFARAGLI 234 (251)
T ss_pred HHHHHCCCC
Confidence 777777765
No 129
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.22 E-value=9.4e-06 Score=65.35 Aligned_cols=94 Identities=26% Similarity=0.351 Sum_probs=60.1
Q ss_pred EEEECCCCcHHH--HHHhhCCCEEEEEecCCChhHHHHHHHh---CC---CCeeeeccc--CCCCCC-Cccchheecccc
Q 046488 329 GLDFSIGTGTFA--ARMREFNVTLVSAIINLGAPFNEMIALR---GL---VPLYITINQ--RVPFFD-NTLDLIHTTRFL 397 (480)
Q Consensus 329 VLDVGCGtG~fA--a~Lae~gV~Vv~vd~d~~~~~~~~iA~r---gl---ip~~~~~ae--~LPFpd-~SFDlV~ss~vL 397 (480)
++|+|||+|... ..+...+..+++++++ ..+....... .. +........ .+++.+ .+||++ +....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLS--PEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCC--HHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999954 3333333466665543 2222221111 11 233444434 388888 599999 66666
Q ss_pred cCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
.++.. ....+.++.|+|+|+|.+++...
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEec
Confidence 66555 25699999999999999988743
No 130
>PRK00811 spermidine synthase; Provisional
Probab=98.21 E-value=1.2e-05 Score=81.02 Aligned_cols=117 Identities=17% Similarity=0.114 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHh------------CCCCeeeecccC-CCCCCCccc
Q 046488 325 EIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALR------------GLVPLYITINQR-VPFFDNTLD 389 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~r------------glip~~~~~ae~-LPFpd~SFD 389 (480)
..++|||+|||+|.++..+.++ ++ .++.++++. ....++++ ..+.++.+++.. +...+++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~---~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE---RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH---HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 3568999999999999999886 44 566666652 22222222 112344455322 344578999
Q ss_pred hheecccccCccChhc--HHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHc
Q 046488 390 LIHTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKML 445 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~l 445 (480)
+|++... .++..... -..++.++.|+|+|||.+++.. .....+.+..+...++..
T Consensus 153 vIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~ 211 (283)
T PRK00811 153 VIIVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV 211 (283)
T ss_pred EEEECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 9998543 22322111 1457899999999999988742 111223344444455554
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.20 E-value=2.9e-06 Score=82.46 Aligned_cols=98 Identities=26% Similarity=0.284 Sum_probs=59.5
Q ss_pred HHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCC--ChhHHHHHHHhCC--CCeeeecc-cCCCCCCCc
Q 046488 316 PEVLDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINL--GAPFNEMIALRGL--VPLYITIN-QRVPFFDNT 387 (480)
Q Consensus 316 ~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~--~~~~~~~iA~rgl--ip~~~~~a-e~LPFpd~S 387 (480)
-+.|.+++|. +|||||||+|.+++.|+.. | -.|++++.+. ...+...++..+. +.+.+++. ..+| ....
T Consensus 65 l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~~ap 141 (209)
T PF01135_consen 65 LEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-EEAP 141 (209)
T ss_dssp HHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-GG-S
T ss_pred HHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-cCCC
Confidence 3567788886 8999999999999999875 3 2467777542 1112222333333 33445553 2233 3567
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI 425 (480)
||.|++..+.... -.++.+-||+||++++
T Consensus 142 fD~I~v~~a~~~i---------p~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 142 FDRIIVTAAVPEI---------PEALLEQLKPGGRLVA 170 (209)
T ss_dssp EEEEEESSBBSS-----------HHHHHTEEEEEEEEE
T ss_pred cCEEEEeeccchH---------HHHHHHhcCCCcEEEE
Confidence 9999998776432 2456777999999887
No 132
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.20 E-value=4.6e-06 Score=80.08 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=78.9
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEE--EEEecCCChh-HHHHHHHhCCCC----eeeecccCCCCCCCccchheecccccC
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTL--VSAIINLGAP-FNEMIALRGLVP----LYITINQRVPFFDNTLDLIHTTRFLDG 399 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~V--v~vd~d~~~~-~~~~iA~rglip----~~~~~ae~LPFpd~SFDlV~ss~vL~h 399 (480)
.+|||+|||.|.+...|++.|... ++++.+..+. ....+|++...+ +.+.+...-.|..+.||+|+--..+.-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 379999999999999999986543 5555443222 233566666544 344443333788899999985433322
Q ss_pred -----ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 400 -----WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 400 -----~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
-.....+..++.-+.+.|+|||.|+|..-.-+. +++.+.++..||..++
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~---dELv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK---DELVEEFENFNFEYLS 202 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH---HHHHHHHhcCCeEEEE
Confidence 212222345888999999999999997533333 3455677776766543
No 133
>PRK04457 spermidine synthase; Provisional
Probab=98.20 E-value=1.9e-05 Score=78.96 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=70.5
Q ss_pred CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC--------CCCeeeeccc-CCCCCCCccchheec
Q 046488 326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG--------LVPLYITINQ-RVPFFDNTLDLIHTT 394 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg--------lip~~~~~ae-~LPFpd~SFDlV~ss 394 (480)
.++|||||||+|.++..++++ +..+++++++ +....+|++. .+.++++++. -+.-.+++||+|++.
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid---p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN---PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECC---HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 468999999999999988875 4567777765 3333343331 1233445432 233334689999974
Q ss_pred cccc--CccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee
Q 046488 395 RFLD--GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK 449 (480)
Q Consensus 395 ~vL~--h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk 449 (480)
. +. ..+.......++.++.++|+|||.+++..|... .....+...++.. |..
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~-~~~~~~l~~l~~~-F~~ 197 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD-KRYDRYLERLESS-FEG 197 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc-hhHHHHHHHHHHh-cCC
Confidence 2 21 111111114699999999999999988544332 2334444444443 543
No 134
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.19 E-value=8.2e-06 Score=88.75 Aligned_cols=119 Identities=14% Similarity=0.124 Sum_probs=70.7
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCCCCCCccchheecc---
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVPFFDNTLDLIHTTR--- 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LPFpd~SFDlV~ss~--- 395 (480)
.+|||+|||+|.++..++.. +..+++++.+..+ .+...+...+. +.+..++ .+ ++++++||+|+|+-
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~--~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE--NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh--hCcCCCccEEEECCCCC
Confidence 47999999999999988764 5678888765311 11112222222 2233333 22 23467899999841
Q ss_pred -----------cccCcc------Ch---hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488 396 -----------FLDGWI------DF---VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 396 -----------vL~h~~------d~---~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl 450 (480)
+..+.+ .. .....++.++.++|+|||.+++..-+. +.+.+.+++...||..+
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---QEEAVTQIFLDHGYNIE 289 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---hHHHHHHHHHhcCCCce
Confidence 111111 00 112447788999999999998853222 23445667777788654
No 135
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.19 E-value=3.8e-06 Score=86.92 Aligned_cols=123 Identities=17% Similarity=0.167 Sum_probs=69.8
Q ss_pred cccccccccccCCCCCCchhhhhHHHhcC-CC-CCCCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCC--hhHHHHHH
Q 046488 292 HEMPRWIKNVDIDPITNLTADFLIPEVLD-IK-PGEIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLG--APFNEMIA 366 (480)
Q Consensus 292 k~~q~W~~~~gf~~~~~~~ad~~I~~vL~-l~-~g~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~--~~~~~~iA 366 (480)
+...+|+... +|...++ +. .....+|||+|||-|+-..-....++ .++++|++.. .++.++..
T Consensus 39 R~fNNwvKs~------------LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~ 106 (331)
T PF03291_consen 39 RNFNNWVKSV------------LIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYK 106 (331)
T ss_dssp HHHHHHHHHH------------HHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHH
T ss_pred HHHhHHHHHH------------HHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHH
Confidence 5666777653 4544433 11 11345899999998886555555554 5678886531 11222220
Q ss_pred H--hCC--------CCe--eeec------ccCCCCCCCccchheecccccCc-cChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 367 L--RGL--------VPL--YITI------NQRVPFFDNTLDLIHTTRFLDGW-IDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 367 ~--rgl--------ip~--~~~~------ae~LPFpd~SFDlV~ss~vL~h~-~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
. ++. ..+ +.++ .+.++.....||+|-|.+++|+. ........+|..+.+.|||||+|+.+
T Consensus 107 ~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 107 QLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp HHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 000 111 2222 12344445699999999999875 34445567999999999999999875
No 136
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.19 E-value=5.8e-06 Score=81.96 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=76.4
Q ss_pred CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCC-------hhHHHHHHHhCCCCeeeecccC--CCCCCCccchheec-
Q 046488 326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLG-------APFNEMIALRGLVPLYITINQR--VPFFDNTLDLIHTT- 394 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~-------~~~~~~iA~rglip~~~~~ae~--LPFpd~SFDlV~ss- 394 (480)
..+|||...|-|.+|+...++|. .|+++.-|.. .|-+....+ ..+.++++++.+ -.|+|.|||+|+-.
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~-~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFE-IAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccc-cccEEecccHHHHHhcCCccccceEeeCC
Confidence 34899999999999999999987 7877764421 011111111 124556666433 25789999998731
Q ss_pred --ccccCccChhcHHHHHHHHHhcccCCcEEEEee-----ccCChhhHHHHHHHHHHcCceeeE
Q 046488 395 --RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS-----FFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 395 --~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~-----f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
+.+.. .-.. +.+..|++|||||||.++--. -++..+-.....+.+++.||..+.
T Consensus 214 PRfS~Ag-eLYs--eefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 214 PRFSLAG-ELYS--EEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred Cccchhh-hHhH--HHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 11110 0011 458999999999999976421 111112234578899999998664
No 137
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.2e-06 Score=79.96 Aligned_cols=97 Identities=26% Similarity=0.240 Sum_probs=66.3
Q ss_pred HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-----CC--CCeeeec-ccCCCCCCC
Q 046488 315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-----GL--VPLYITI-NQRVPFFDN 386 (480)
Q Consensus 315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-----gl--ip~~~~~-ae~LPFpd~ 386 (480)
+-++|.+++++ +||+||||+|..++.|++..-.|+++..+ +.+...|++ |. +.+.+++ ..-+| +..
T Consensus 64 m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~siEr~---~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~a 137 (209)
T COG2518 64 MLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSIERI---EELAEQARRNLETLGYENVTVRHGDGSKGWP-EEA 137 (209)
T ss_pred HHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEEEEc---HHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCC
Confidence 34677788875 89999999999999999985588888755 233333332 33 3334444 33344 347
Q ss_pred ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
-||.|+.+.+...+++ -+.+-|||||++++-
T Consensus 138 PyD~I~Vtaaa~~vP~---------~Ll~QL~~gGrlv~P 168 (209)
T COG2518 138 PYDRIIVTAAAPEVPE---------ALLDQLKPGGRLVIP 168 (209)
T ss_pred CcCEEEEeeccCCCCH---------HHHHhcccCCEEEEE
Confidence 7999998887755443 245679999998873
No 138
>PRK03612 spermidine synthase; Provisional
Probab=98.14 E-value=1.3e-05 Score=87.54 Aligned_cols=118 Identities=14% Similarity=0.036 Sum_probs=74.5
Q ss_pred CCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHhC--------------CCCeeeecccC-CCCCCCcc
Q 046488 326 IRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALRG--------------LVPLYITINQR-VPFFDNTL 388 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~rg--------------lip~~~~~ae~-LPFpd~SF 388 (480)
.++|||+|||+|..+..+.+++ ..++.+++| +...+.+++. .+.++.+++.. +...+++|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid---~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD---PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC---HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4689999999999999988774 367777765 3333344331 12334444332 33345799
Q ss_pred chheecccccCccC-hh--cHHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCc
Q 046488 389 DLIHTTRFLDGWID-FV--LLDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKY 447 (480)
Q Consensus 389 DlV~ss~vL~h~~d-~~--~l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGf 447 (480)
|+|++...- ++.. .. .-..+++++.|.|||||.+++.. .....+....+.+.+++.||
T Consensus 375 DvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 375 DVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 999986432 2211 00 01247899999999999988853 11223344567788888888
No 139
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2e-05 Score=78.85 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=83.1
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCC--ChhHHHHHHHhCCCC---eeeecccCCCCCC
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINL--GAPFNEMIALRGLVP---LYITINQRVPFFD 385 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~--~~~~~~~iA~rglip---~~~~~ae~LPFpd 385 (480)
||-..+.+.+|. +|||.|.|+|.++++|+.. | -.+++++... ..-+.+.+..-+... ...++....-+++
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 666778888886 8999999999999999953 2 2566666542 112222333223322 2334443333444
Q ss_pred CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488 386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl 450 (480)
.||+|+. .++++. .++..++.+|||||.+++ |...-+++++..+.++..||..+
T Consensus 163 -~vDav~L-----Dmp~PW---~~le~~~~~Lkpgg~~~~--y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 163 -DVDAVFL-----DLPDPW---NVLEHVSDALKPGGVVVV--YSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred -ccCEEEE-----cCCChH---HHHHHHHHHhCCCcEEEE--EcCCHHHHHHHHHHHHhcCccch
Confidence 8998884 345663 599999999999999877 44556677777777888898755
No 140
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.10 E-value=4.3e-06 Score=86.00 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=65.6
Q ss_pred CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHH----HHHhC--CCC--eeeec------ccCCCCCCCcc
Q 046488 326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEM----IALRG--LVP--LYITI------NQRVPFFDNTL 388 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~----iA~rg--lip--~~~~~------ae~LPFpd~SF 388 (480)
...+||+|||-|+-....-..|+ ..+++|+.... .++.+ ..... .++ ++.++ .+.+++.|.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 34799999999987666555554 35666653211 11111 11111 112 23333 45688888889
Q ss_pred chheecccccC-ccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 389 DLIHTTRFLDG-WIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 389 DlV~ss~vL~h-~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
|+|-|.+++|. |...+....+|..+.+.|||||+||-+
T Consensus 198 DivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 198 DIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred ceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 99999999875 344445567999999999999998764
No 141
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.06 E-value=6.2e-05 Score=80.34 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=69.7
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecc----cCCCCCCCccchheeccc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITIN----QRVPFFDNTLDLIHTTRF 396 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~a----e~LPFpd~SFDlV~ss~v 396 (480)
.+|||+|||+|.++..|++.+..+++++.+. .+.. .+...+. +.++.+++ ..+++.+++||+|++.--
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~--~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP 376 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVE--AMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP 376 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC
Confidence 4899999999999999998887888888663 2322 1222222 33444443 234567789999986321
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW 452 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W 452 (480)
...+...+..+.+ ++|++.++++ |....+.+=...+...||+-.+-
T Consensus 377 ------r~g~~~~~~~l~~-~~~~~ivyvS---Cnp~tlaRDl~~L~~~gY~l~~i 422 (443)
T PRK13168 377 ------RAGAAEVMQALAK-LGPKRIVYVS---CNPATLARDAGVLVEAGYRLKRA 422 (443)
T ss_pred ------CcChHHHHHHHHh-cCCCeEEEEE---eChHHhhccHHHHhhCCcEEEEE
Confidence 1111335555555 6999998885 44444433233444568875443
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.04 E-value=0.00011 Score=73.51 Aligned_cols=98 Identities=13% Similarity=-0.033 Sum_probs=58.3
Q ss_pred CCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHhC-----------CCCeeeecc-cCCCCCCCccch
Q 046488 325 EIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALRG-----------LVPLYITIN-QRVPFFDNTLDL 390 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~a-e~LPFpd~SFDl 390 (480)
..++|||||||+|.++..+.++. ..++.++++. .....+.+. .+.+..+++ +-+...+++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~---~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE---KVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH---HHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 34589999999999998887763 3455555542 222222221 122223332 112223579999
Q ss_pred heecccccCccChhc--HHHHHHHHHhcccCCcEEEEe
Q 046488 391 IHTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 391 V~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~ 426 (480)
|++.... ++..... ...++..+.+.|+|||.+++.
T Consensus 149 Ii~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9985432 2221110 145889999999999998875
No 143
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.02 E-value=3.4e-06 Score=85.40 Aligned_cols=98 Identities=18% Similarity=0.149 Sum_probs=71.5
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCC-CeeeecccCCCCCCCccchheecccccCccChhc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLV-PLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVL 405 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgli-p~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~ 405 (480)
..++|+|||.|.....- -...+++.|+.. -+...+++.+. ....+++-.+|+.+.+||.+++..++||+.....
T Consensus 47 sv~~d~gCGngky~~~~--p~~~~ig~D~c~---~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLGVN--PLCLIIGCDLCT---GLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred ceeeecccCCcccCcCC--Ccceeeecchhh---hhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence 47999999999743221 123445554431 22234444444 4666778899999999999999999999987666
Q ss_pred HHHHHHHHHhcccCCcEEEEeecc
Q 046488 406 LDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 406 l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
...++.|+.|+|||||...|..|-
T Consensus 122 R~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHhcCCCceEEEEeh
Confidence 678999999999999997776554
No 144
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.02 E-value=4e-05 Score=74.92 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=80.0
Q ss_pred cCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCC------------------CeeeecccC
Q 046488 319 LDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLV------------------PLYITINQR 380 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgli------------------p~~~~~ae~ 380 (480)
+...++ .+||+.|||.|.-+..|+++|..|++++++. .+.+++.++... .++.++.-.
T Consensus 33 l~~~~~--~rvLvPgCG~g~D~~~La~~G~~VvGvDls~--~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~ 108 (218)
T PF05724_consen 33 LALKPG--GRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP--TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE 108 (218)
T ss_dssp HTTSTS--EEEEETTTTTSCHHHHHHHTTEEEEEEES-H--HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred cCCCCC--CeEEEeCCCChHHHHHHHHCCCeEEEEecCH--HHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc
Confidence 344443 4899999999999999999999999998752 344444333321 122333333
Q ss_pred CCCCC-CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee--ccCChh-----h--HHHHHHHHHHcCceee
Q 046488 381 VPFFD-NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS--FFCAKE-----D--MNDYLEVFKMLKYKKH 450 (480)
Q Consensus 381 LPFpd-~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~--f~~~~e-----d--L~~~~~~l~~lGfkkl 450 (480)
++-.+ +.||+|+=..+|+-++ ++....+..-+.++|||||.+++.. +-.... . .+++.+++. -+|+..
T Consensus 109 l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~ 186 (218)
T PF05724_consen 109 LPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIE 186 (218)
T ss_dssp GGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEE
T ss_pred CChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEE
Confidence 43322 4799999766776554 3445889999999999999944432 211110 1 245666666 466654
Q ss_pred EEEE
Q 046488 451 KWVV 454 (480)
Q Consensus 451 ~W~~ 454 (480)
....
T Consensus 187 ~l~~ 190 (218)
T PF05724_consen 187 ELEE 190 (218)
T ss_dssp EEEE
T ss_pred EEec
Confidence 4443
No 145
>PRK01581 speE spermidine synthase; Validated
Probab=98.01 E-value=4.7e-05 Score=79.98 Aligned_cols=123 Identities=10% Similarity=-0.046 Sum_probs=72.8
Q ss_pred CCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHh---------C-----CCCeeeecccC-CCCCCCc
Q 046488 325 EIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALR---------G-----LVPLYITINQR-VPFFDNT 387 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~r---------g-----lip~~~~~ae~-LPFpd~S 387 (480)
..++||++|||+|..+..+.+++ ..++.++++ +...++|++ + .+.++++++.. ++-.++.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID---peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLD---GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC---HHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 34689999999999988888763 356666665 333444442 1 12233444332 3445678
Q ss_pred cchheecccccCccC---hhcHHHHHHHHHhcccCCcEEEEeecc--CChhhHHHHHHHHHHcCceeeE
Q 046488 388 LDLIHTTRFLDGWID---FVLLDFILYDWDRVLRPGGLLWIDSFF--CAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 388 FDlV~ss~vL~h~~d---~~~l~~~L~EI~RVLKPGG~fiI~~f~--~~~edL~~~~~~l~~lGfkkl~ 451 (480)
||+|++... ..... .-.-..++..+.+.|+|||.|++..-. ........+...++..|+....
T Consensus 227 YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~ 294 (374)
T PRK01581 227 YDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKS 294 (374)
T ss_pred ccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEE
Confidence 999998632 11110 000134889999999999998775211 0111123355677777776543
No 146
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.00 E-value=2.7e-05 Score=74.72 Aligned_cols=98 Identities=22% Similarity=0.281 Sum_probs=62.1
Q ss_pred eEEEECCCCcHHHHHHhhC--CCEEEEEecCCC--hhHHHHHHHhCCCCee--eecccC-C--CCCCCccchheeccccc
Q 046488 328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLG--APFNEMIALRGLVPLY--ITINQR-V--PFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~--~~~~~~iA~rglip~~--~~~ae~-L--PFpd~SFDlV~ss~vL~ 398 (480)
.+||||||.|.|...+|.. +...+|+++... ..+..++..+++-++. .+++.. + -++++++|.|+..+- .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 8999999999999999886 677888886531 1233344555554433 333333 2 256799999997553 3
Q ss_pred CccCh------hcHHHHHHHHHhcccCCcEEEEe
Q 046488 399 GWIDF------VLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 399 h~~d~------~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+|+.. -.-..++.++.|+|||||.+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 45421 01145899999999999998773
No 147
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=9.2e-05 Score=74.91 Aligned_cols=117 Identities=19% Similarity=0.222 Sum_probs=70.3
Q ss_pred eEEEECCCCcHHHHHHhhCC--CEEEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchheecc--ccc---
Q 046488 328 IGLDFSIGTGTFAARMREFN--VTLVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTR--FLD--- 398 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~--vL~--- 398 (480)
+|||+|||+|..|..++... ..|+++|++..+- +...+...+......-...-+.--.+.||+|+|+= .=.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 79999999999999999874 3788888764222 11222233332222111111222233899999851 100
Q ss_pred --------Ccc------C---hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCc
Q 046488 399 --------GWI------D---FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKY 447 (480)
Q Consensus 399 --------h~~------d---~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGf 447 (480)
+-+ . ......++.++.+.|+|||.+++-.-+. +.+.+.+++...|+
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~---q~~~v~~~~~~~~~ 255 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT---QGEAVKALFEDTGF 255 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC---cHHHHHHHHHhcCC
Confidence 000 0 1234568899999999999988854222 23456678888885
No 148
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.98 E-value=4.8e-05 Score=75.95 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=79.4
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHhCC---CCeeeecccCCCCC-
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALRGL---VPLYITINQRVPFF- 384 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~rgl---ip~~~~~ae~LPFp- 384 (480)
+|-..+++.||. +||+.|.|+|+++..|+.. .-.+.+++.... ..+...+..-|+ +.+.+.+...-.|.
T Consensus 31 ~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 555678899986 8999999999999999863 236777775421 122233333343 23444443222232
Q ss_pred --CCccchheecccccCccChhcHHHHHHHHHhcc-cCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488 385 --DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVL-RPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 385 --d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVL-KPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl 450 (480)
++.||.|+. .++++. .++..+.++| ||||++++ |...-+++.+..+.++..||..+
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw---~~i~~~~~~L~~~gG~i~~--fsP~ieQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPW---EAIPHAKRALKKPGGRICC--FSPCIEQVQKTVEALREHGFTDI 167 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGG---GGHHHHHHHE-EEEEEEEE--EESSHHHHHHHHHHHHHTTEEEE
T ss_pred cccCcccEEEE-----eCCCHH---HHHHHHHHHHhcCCceEEE--ECCCHHHHHHHHHHHHHCCCeee
Confidence 478998874 345554 3899999999 99998776 45556777888888899999754
No 149
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.92 E-value=5.2e-05 Score=74.81 Aligned_cols=87 Identities=18% Similarity=0.073 Sum_probs=51.8
Q ss_pred CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHH-HHHhCCCCee-eeccc-----CCCCCCCccchheecccc
Q 046488 326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEM-IALRGLVPLY-ITINQ-----RVPFFDNTLDLIHTTRFL 397 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~-iA~rglip~~-~~~ae-----~LPFpd~SFDlV~ss~vL 397 (480)
..+|||+|||||.|+..++++|+ .++++|++. .++.. ......+..+ ....+ .++..-..||+++++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~--~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGY--NQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCH--HHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence 35899999999999999999875 577777542 23322 2111111111 11122 22222235666665443
Q ss_pred cCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 398 DGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
..|..+.+.|+| |.+++.
T Consensus 153 ----------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 153 ----------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ----------hHHHHHHHHhCc-CeEEEE
Confidence 258899999999 887664
No 150
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.92 E-value=2.9e-05 Score=76.28 Aligned_cols=106 Identities=12% Similarity=0.069 Sum_probs=64.3
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecc-cCCC--
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITIN-QRVP-- 382 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~a-e~LP-- 382 (480)
++..++.+.+. ++|||+|||+|..+..++.. +..+++++.+... .+.+.+++.|. +.+..+.+ +.|+
T Consensus 59 ~L~~l~~~~~~--~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 59 FLSMLVKIMNA--KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHhCC--CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 33334444433 48999999999977766653 3477787766321 12223333343 33444442 2222
Q ss_pred ---CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 383 ---FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 383 ---Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
.++++||+|+.... . + ....++.++.+.|||||.+++++
T Consensus 137 ~~~~~~~~fD~VfiDa~----k-~-~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD----K-P-NYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HhCCCCCCCCEEEECCC----H-H-HHHHHHHHHHHhcCCCeEEEEEc
Confidence 12578999986432 1 1 12468999999999999999875
No 151
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.91 E-value=2.5e-05 Score=79.54 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=64.8
Q ss_pred CeEEEECCCCcH----HHHHHhhC------CCEEEEEecCCChhHHHHHHHhCCCC------------------------
Q 046488 327 RIGLDFSIGTGT----FAARMREF------NVTLVSAIINLGAPFNEMIALRGLVP------------------------ 372 (480)
Q Consensus 327 R~VLDVGCGtG~----fAa~Lae~------gV~Vv~vd~d~~~~~~~~iA~rglip------------------------ 372 (480)
-+|+..||.||. +|..+.+. ++.++++|++. .+ ...|++|..+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~--~a-L~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~ 193 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDT--EV-LEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHE 193 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCH--HH-HHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCC
Confidence 479999999995 56666553 46788888763 22 2222322100
Q ss_pred --------------eeeecccCCCCC-CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 373 --------------LYITINQRVPFF-DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 373 --------------~~~~~ae~LPFp-d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+...+....|++ .+.||+|+|..+++|+.+... ..++..+++.|+|||+|++.+
T Consensus 194 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~-~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 194 GLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQ-ERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred ceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHH-HHHHHHHHHHhCCCcEEEEeC
Confidence 111112222343 588999999999998865443 789999999999999988853
No 152
>PHA03412 putative methyltransferase; Provisional
Probab=97.91 E-value=4.2e-05 Score=76.11 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=58.5
Q ss_pred CeEEEECCCCcHHHHHHhhC-----CCEEEEEecCCChhHHHHHHHhCC--CCeeeecccCCCCCCCccchheecccccC
Q 046488 327 RIGLDFSIGTGTFAARMREF-----NVTLVSAIINLGAPFNEMIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDG 399 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~-----gV~Vv~vd~d~~~~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h 399 (480)
.+|||+|||+|.++..++++ ...+++++++ +....+|.+.. +.+..++....++ +++||+|+++==+..
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID---~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELN---HTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECC---HHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCC
Confidence 37999999999999988763 4577777776 33344444443 3445555555554 679999999622211
Q ss_pred c--cC-------hhcHHHHHHHHHhcccCCcE
Q 046488 400 W--ID-------FVLLDFILYDWDRVLRPGGL 422 (480)
Q Consensus 400 ~--~d-------~~~l~~~L~EI~RVLKPGG~ 422 (480)
. .+ ......++..+.|.++||+.
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 11 11124578888897777776
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.90 E-value=5.5e-05 Score=75.49 Aligned_cols=98 Identities=18% Similarity=0.285 Sum_probs=64.0
Q ss_pred CCCeEEEECCCCcHHHHHHhhC-C-CEEEEEecCCChhHHHHHHHhCC---------CC---------------------
Q 046488 325 EIRIGLDFSIGTGTFAARMREF-N-VTLVSAIINLGAPFNEMIALRGL---------VP--------------------- 372 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~-g-V~Vv~vd~d~~~~~~~~iA~rgl---------ip--------------------- 372 (480)
....+|||||-.|.+++.+++. + -.++++|+| +.+.+.|.+.. +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID---~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDID---PVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeecc---HHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 3457999999999999999986 3 346777776 34444433211 00
Q ss_pred -----------------eeeecccCCCCCCCccchheeccc----ccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 373 -----------------LYITINQRVPFFDNTLDLIHTTRF----LDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 373 -----------------~~~~~ae~LPFpd~SFDlV~ss~v----L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
.++...+-|-+..+.||+|.|..+ --+|.|.. +..+|..+.|.|.|||+|++-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~G-L~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDG-LRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHH-HHHHHHHHHHhhCcCcEEEEc
Confidence 000001122345678999998532 22455554 578999999999999999985
No 154
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.89 E-value=1.1e-05 Score=84.48 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH--HHHH---hCCCCeeeecccCCCCCCCccchheec
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE--MIAL---RGLVPLYITINQRVPFFDNTLDLIHTT 394 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~--~iA~---rglip~~~~~ae~LPFpd~SFDlV~ss 394 (480)
+.++. .++|+|||.|....+++.. +..+++++.+.-..... ..+. ...-..+..+....||+|++||.+.+.
T Consensus 108 ~~~~~--~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 108 CFPGS--KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred Ccccc--cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 55554 6899999999999888875 34555655432111111 1111 111223556788889999999999999
Q ss_pred ccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
.+..|.++.. .++.|++||++|||+++.-.
T Consensus 186 d~~~~~~~~~---~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 186 EVVCHAPDLE---KVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred eecccCCcHH---HHHHHHhcccCCCceEEeHH
Confidence 9999988874 69999999999999988753
No 155
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.84 E-value=2.6e-05 Score=80.92 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=66.3
Q ss_pred CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhCCC----CeeeecccCCCCCCCccchheecccccCc
Q 046488 326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRGLV----PLYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rgli----p~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.++|||||||||.++...++.|. .|++++.+..+....++...... ....+..+.+-.|-...|+|++-+.=...
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~L 140 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFL 140 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHH
Confidence 46899999999999998888864 56777655444444455544433 33345566655558999999985432211
Q ss_pred cChhcHHHHHHHHHhcccCCcEEE
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLW 424 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fi 424 (480)
--...+..+|..=+|-|+|||.++
T Consensus 141 l~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 141 LYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHhhhhhhhhhhhhhccCCCceEc
Confidence 112234567888899999999876
No 156
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.84 E-value=0.00015 Score=76.78 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=70.2
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC--CCeeeeccc----CCCCCCCccchheeccccc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL--VPLYITINQ----RVPFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae----~LPFpd~SFDlV~ss~vL~ 398 (480)
.+|||+|||+|.++..|++....+++++.+..+- +...+...+. +.++.++++ .+++.+++||+|+..---.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~ 373 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRK 373 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCC
Confidence 4899999999999999998877788888763211 1112222232 334445533 2345567899998532111
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
.. . ..++.++.+ |+|++.++++ |....+.+-...+...||+-..
T Consensus 374 G~-~----~~~l~~l~~-l~~~~ivyvs---c~p~tlard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 374 GC-A----AEVLRTIIE-LKPERIVYVS---CNPATLARDLEFLCKEGYGITW 417 (431)
T ss_pred CC-C----HHHHHHHHh-cCCCEEEEEc---CCHHHHHHHHHHHHHCCeeEEE
Confidence 10 1 346666655 8999987774 5555554444556667876433
No 157
>PLN02366 spermidine synthase
Probab=97.83 E-value=0.00019 Score=73.78 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=66.3
Q ss_pred CCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhC-----------CCCeeeecccCC--CCCCCccch
Q 046488 326 IRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALRG-----------LVPLYITINQRV--PFFDNTLDL 390 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~ae~L--PFpd~SFDl 390 (480)
.++||+||||.|..+..++++ ++ .++.+++| +....++++. .+.++.+++... ..+++.||+
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD---~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEID---KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC---HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 568999999999999999887 33 34455554 2222222221 233444442211 123678999
Q ss_pred heecccccCccChhc--HHHHHHHHHhcccCCcEEEEe---eccCChhhHHHHHHHHHHc
Q 046488 391 IHTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWID---SFFCAKEDMNDYLEVFKML 445 (480)
Q Consensus 391 V~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~---~f~~~~edL~~~~~~l~~l 445 (480)
|++... .++..... -..++..+.++|+|||.+++. .|.. .+....+...++..
T Consensus 169 Ii~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~-~~~~~~i~~tl~~~ 226 (308)
T PLN02366 169 IIVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH-MDLIEDLIAICRET 226 (308)
T ss_pred EEEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc-hHHHHHHHHHHHHH
Confidence 997432 22221110 135899999999999998764 2332 33344444444444
No 158
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.76 E-value=0.00012 Score=71.82 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=78.5
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccC--CC-CCCCccchheecccccCccCh
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQR--VP-FFDNTLDLIHTTRFLDGWIDF 403 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~--LP-Fpd~SFDlV~ss~vL~h~~d~ 403 (480)
-++|||||=+...+..-.. -+.|+.+|++..++. +...+.-. +| -+++.||+|.++.+|..++++
T Consensus 53 lrlLEVGals~~N~~s~~~-~fdvt~IDLns~~~~-----------I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG-WFDVTRIDLNSQHPG-----------ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred ceEEeecccCCCCcccccC-ceeeEEeecCCCCCC-----------ceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 4799999986655443322 234666666542222 22233223 44 247899999999999999988
Q ss_pred hcHHHHHHHHHhcccCCcE-----EEEe-eccCCh----hhHHHHHHHHHHcCceeeEEEEe
Q 046488 404 VLLDFILYDWDRVLRPGGL-----LWID-SFFCAK----EDMNDYLEVFKMLKYKKHKWVVV 455 (480)
Q Consensus 404 ~~l~~~L~EI~RVLKPGG~-----fiI~-~f~~~~----edL~~~~~~l~~lGfkkl~W~~~ 455 (480)
......+.-+++.|||+|. ++|. .--|.. -+.+.+..+++.+||..++.+..
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEec
Confidence 8778899999999999999 6554 222211 12356889999999987765443
No 159
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.74 E-value=6.1e-05 Score=85.03 Aligned_cols=120 Identities=20% Similarity=0.079 Sum_probs=68.9
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChh--HHHHHHHhCC----CCeeeecc-cCCCCCCCccchheecc---
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAP--FNEMIALRGL----VPLYITIN-QRVPFFDNTLDLIHTTR--- 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~--~~~~iA~rgl----ip~~~~~a-e~LPFpd~SFDlV~ss~--- 395 (480)
++|||+|||||.++..++..|. .|++++.+..+- +...++..+. +.++.+++ +-+.-..++||+|++.=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f 619 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTF 619 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCC
Confidence 5899999999999999998876 488877653211 1222333332 22333442 21211257899999841
Q ss_pred cc-----cCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee
Q 046488 396 FL-----DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK 449 (480)
Q Consensus 396 vL-----~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk 449 (480)
.- ..+........++..+.++|+|||.+++..-... +..-...+...|++-
T Consensus 620 ~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---~~~~~~~~~~~g~~~ 675 (702)
T PRK11783 620 SNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---FKMDEEGLAKLGLKA 675 (702)
T ss_pred CCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---CChhHHHHHhCCCeE
Confidence 10 0010011124578889999999999988532111 111245666667653
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.71 E-value=0.00017 Score=67.68 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=58.1
Q ss_pred CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCC------CCe-eeecccCC--C-CCCCccchhee
Q 046488 326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGL------VPL-YITINQRV--P-FFDNTLDLIHT 393 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rgl------ip~-~~~~ae~L--P-Fpd~SFDlV~s 393 (480)
.++||++|||+|..+..++.. ...++.+|.+..-+....-.+... +.+ .+.|.+.+ . ...+.||+|++
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ila 125 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILA 125 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEE
Confidence 458999999999999888887 567777776542122222122211 111 12443322 1 24568999999
Q ss_pred cccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488 394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC 430 (480)
Q Consensus 394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~ 430 (480)
+.++..- ...+.++.=+.+.|+|+|.+++..-.+
T Consensus 126 sDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 126 SDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp ES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ecccchH---HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9998753 334678999999999999977764333
No 161
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.69 E-value=0.00023 Score=72.63 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=58.1
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC--CCeeeecccCCCC-CCCccchheecccccCcc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL--VPLYITINQRVPF-FDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae~LPF-pd~SFDlV~ss~vL~h~~ 401 (480)
.+|||+|||+|.++..+++++..+++++.+..+- +...+...+. +.++.++++.+.. .++.||+|++. +
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d------P 248 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN------P 248 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC------C
Confidence 4899999999999999999988888888763211 1112222232 3344555544432 34679999864 1
Q ss_pred ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 402 DFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
++..+...+.++..-++|++.++++
T Consensus 249 Pr~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 249 PRRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred CCCCccHHHHHHHHHcCCCeEEEEE
Confidence 2211122344555557899888875
No 162
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.68 E-value=0.00013 Score=70.37 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=58.0
Q ss_pred CCCCeEEEECCCCcH----HHHHHhh-----C--CCEEEEEecCCChhHHHHHHHhCC--------CC------------
Q 046488 324 GEIRIGLDFSIGTGT----FAARMRE-----F--NVTLVSAIINLGAPFNEMIALRGL--------VP------------ 372 (480)
Q Consensus 324 g~iR~VLDVGCGtG~----fAa~Lae-----~--gV~Vv~vd~d~~~~~~~~iA~rgl--------ip------------ 372 (480)
+..-+|+.+||+||. +|..|.+ . .+.++++|++. .....|++|. ++
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~---~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~ 106 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP---SALEKARAGIYPERSLRGLPPAYLRRYFTERD 106 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H---HHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH---HHHHHHHhCCCCHHHHhhhHHHHHHHhccccC
Confidence 344579999999995 6666666 1 36788888763 2233344331 11
Q ss_pred ---------------eeeecccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 373 ---------------LYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 373 ---------------~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+.....-..+.+.+.||+|+|..+|..+.+... ..++..+++.|+|||+|++.
T Consensus 107 ~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~-~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 107 GGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQ-QRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHH-HHHHHHHGGGEEEEEEEEE-
T ss_pred CCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHH-HHHHHHHHHHcCCCCEEEEe
Confidence 001111223446789999999999998865543 78999999999999999985
No 163
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00013 Score=72.01 Aligned_cols=99 Identities=26% Similarity=0.287 Sum_probs=64.3
Q ss_pred CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCC--hhHHHHHHHhCCCCeee--eccc---CCCCCCCccchheecccc
Q 046488 327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLG--APFNEMIALRGLVPLYI--TINQ---RVPFFDNTLDLIHTTRFL 397 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~--~~~~~~iA~rglip~~~--~~ae---~LPFpd~SFDlV~ss~vL 397 (480)
..+||||||.|.+...+|.++ ...+|+.+... ..+...+.+.++-++.+ .++. ..-++++|.|-|+..+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 379999999999999999874 45677775431 12333333334314432 3322 22346679999997654
Q ss_pred cCccCh------hcHHHHHHHHHhcccCCcEEEEe
Q 046488 398 DGWIDF------VLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 398 ~h~~d~------~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
.+|+.. -.-..++.++.|+|||||.|.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 456421 11145899999999999999884
No 164
>PLN02672 methionine S-methyltransferase
Probab=97.60 E-value=0.00029 Score=82.72 Aligned_cols=126 Identities=15% Similarity=0.084 Sum_probs=73.8
Q ss_pred CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhC------------------CCCeeeec-ccCCCC
Q 046488 327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRG------------------LVPLYITI-NQRVPF 383 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rg------------------lip~~~~~-ae~LPF 383 (480)
.+|||+|||+|..+..++++ +..+++++++..+- +...+...+ .+.++.++ .+.++-
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 47999999999999999875 35778887663221 111222211 12334444 322221
Q ss_pred CCCccchheeccc---------cc-----C-----------cc-------Ch---hcHHHHHHHHHhcccCCcEEEEeec
Q 046488 384 FDNTLDLIHTTRF---------LD-----G-----------WI-------DF---VLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 384 pd~SFDlV~ss~v---------L~-----h-----------~~-------d~---~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
....||+|+++=- +. | .. +. .....++.+..++|||||++++-.-
T Consensus 200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1236999998611 10 0 00 00 0124578899999999999887533
Q ss_pred cCChhhHHHHH-HHHHHcCceee-EEEEe
Q 046488 429 FCAKEDMNDYL-EVFKMLKYKKH-KWVVV 455 (480)
Q Consensus 429 ~~~~edL~~~~-~~l~~lGfkkl-~W~~~ 455 (480)
.... +.+. +++++.||+.. .|...
T Consensus 280 ~~q~---~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 280 GRPG---QAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred ccHH---HHHHHHHHHHCCCCeeEEeeeh
Confidence 2222 3455 57888899875 57764
No 165
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.0004 Score=72.44 Aligned_cols=120 Identities=23% Similarity=0.174 Sum_probs=80.3
Q ss_pred CCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC----C---Ceeee-cccCCCCCCCccchh
Q 046488 320 DIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL----V---PLYIT-INQRVPFFDNTLDLI 391 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl----i---p~~~~-~ae~LPFpd~SFDlV 391 (480)
.+++|+ .|||==||||++.....-.|+.++|.|++. .+..-++.++ + ..+.. ++..+||++++||.|
T Consensus 194 ~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~Did~---~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaI 268 (347)
T COG1041 194 RVKRGE--LVLDPFCGTGGILIEAGLMGARVIGSDIDE---RMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAI 268 (347)
T ss_pred ccccCC--EeecCcCCccHHHHhhhhcCceEeecchHH---HHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceE
Confidence 355665 899999999999999988899999998762 2222222221 1 22333 689999999999999
Q ss_pred eecc--ccc---CccC-hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 392 HTTR--FLD---GWID-FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 392 ~ss~--vL~---h~~d-~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
.+.- ... .-.. ......+|.++.+|||+||++++...... .+.+..+||+-+.
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~-------~~~~~~~~f~v~~ 327 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP-------RHELEELGFKVLG 327 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-------hhhHhhcCceEEE
Confidence 9841 111 1111 23346799999999999999988544211 2345566787653
No 166
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.56 E-value=0.00015 Score=75.26 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=68.2
Q ss_pred CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeec-ccCCCCCCCccchheecccccCcc
Q 046488 325 EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITI-NQRVPFFDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae~LPFpd~SFDlV~ss~vL~h~~ 401 (480)
.....+|+|.|+|..+..+..+ .+..+.+++...-.+...++ .| +..+.++ .+..|-.| +|++-++|+||.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g-V~~v~gdmfq~~P~~d----aI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG-VEHVAGDMFQDTPKGD----AIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC-cceecccccccCCCcC----eEEEEeecccCC
Confidence 4578999999999999888876 45556655421111122222 22 4444444 55566544 999999999999
Q ss_pred ChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 402 DFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
|.+. .++|+.++.-|+|||.+++.+-
T Consensus 251 Dedc-vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDC-VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHH-HHHHHHHHHhCCCCCEEEEEec
Confidence 8753 7899999999999999988643
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.54 E-value=0.00028 Score=70.15 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=50.2
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-----CCCCeeeecccCCCCCCCccchh
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-----GLVPLYITINQRVPFFDNTLDLI 391 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-----glip~~~~~ae~LPFpd~SFDlV 391 (480)
+.+++.++ .+|||||||+|.++..+++++..+++++++. .+.. .+.+ ..+.++.+++..++++ .||.|
T Consensus 23 ~~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~--~~~~-~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 23 EYAEDTDG--DPVLEIGPGKGALTDELAKRAKKVYAIELDP--RLAE-FLRDDEIAAGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred HhcCCCCc--CeEEEEeCccCHHHHHHHHhCCEEEEEECCH--HHHH-HHHHHhccCCCEEEEEeccccCCch--hceEE
Confidence 33445444 4899999999999999999887888888763 2222 2222 2344566677777765 48999
Q ss_pred eecccc
Q 046488 392 HTTRFL 397 (480)
Q Consensus 392 ~ss~vL 397 (480)
+++--.
T Consensus 96 v~NlPy 101 (258)
T PRK14896 96 VSNLPY 101 (258)
T ss_pred EEcCCc
Confidence 886543
No 168
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.54 E-value=0.00037 Score=73.90 Aligned_cols=99 Identities=18% Similarity=-0.017 Sum_probs=57.4
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCC----CCeeeecccC----CCCCCCccchheecc
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGL----VPLYITINQR----VPFFDNTLDLIHTTR 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rgl----ip~~~~~ae~----LPFpd~SFDlV~ss~ 395 (480)
++|||+|||||.|+..++..|. .+++++.+..+ .+.+.++..+. +.++.+++.. +.-..++||+|++.=
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999987666554 67787765321 11222333332 1233444222 112356899999752
Q ss_pred cccCccCh-------hcHHHHHHHHHhcccCCcEEEEe
Q 046488 396 FLDGWIDF-------VLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 396 vL~h~~d~-------~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
-. ..... .....++....++|+|||.++..
T Consensus 302 P~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 302 PK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred CC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 11 00111 11234555678999999998874
No 169
>PRK04148 hypothetical protein; Provisional
Probab=97.51 E-value=0.00058 Score=62.54 Aligned_cols=91 Identities=14% Similarity=0.038 Sum_probs=59.7
Q ss_pred CeEEEECCCCcH-HHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCC-CCccchheecccccCccChh
Q 046488 327 RIGLDFSIGTGT-FAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFF-DNTLDLIHTTRFLDGWIDFV 404 (480)
Q Consensus 327 R~VLDVGCGtG~-fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFp-d~SFDlV~ss~vL~h~~d~~ 404 (480)
+++||||||+|. ++..|++.|..|+++|.+. ...+.+++..+.++.++.-.-++. -..+|+|.+.+. +.
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~---~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp------p~ 88 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINE---KAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP------PR 88 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCH---HHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC------CH
Confidence 579999999996 9999999999999999773 334445555667777763333322 466888887542 32
Q ss_pred cHHHHHHHHHhcccCCcEEEEeec
Q 046488 405 LLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 405 ~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
++...+.++.+-+ |.-++|..+
T Consensus 89 el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 89 DLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred HHHHHHHHHHHHc--CCCEEEEcC
Confidence 3345566666544 344555443
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.47 E-value=0.00025 Score=71.04 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=49.4
Q ss_pred hcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh---CCCCeeeecccCCCCCCCccchheec
Q 046488 318 VLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR---GLVPLYITINQRVPFFDNTLDLIHTT 394 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r---glip~~~~~ae~LPFpd~SFDlV~ss 394 (480)
.+.+.++ .+|||+|||+|.++..+++++..+++++.+. .+......+ ..+.++.+++..+++++-.+|.|+++
T Consensus 37 ~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~--~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 37 AAGPQPG--DNVLEIGPGLGALTEPLLERAAKVTAVEIDR--DLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred hcCCCCc--CeEEEeCCCccHHHHHHHHhCCcEEEEECCH--HHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 3444444 4899999999999999999877888888763 333322221 23556677777787765435777765
No 171
>PLN02476 O-methyltransferase
Probab=97.47 E-value=0.00027 Score=71.77 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=64.7
Q ss_pred HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCCC--
Q 046488 315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVPF-- 383 (480)
Q Consensus 315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LPF-- 383 (480)
+..++.+.. .++|||||+|+|..+..++.. +-.+++++.+... .+.+.+++.|. +.+..+. .+-|+-
T Consensus 110 L~~L~~~~~--ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 110 LAMLVQILG--AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHhcC--CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 333444443 358999999999999988863 3356777765321 12223333343 3334444 222321
Q ss_pred ---CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 384 ---FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 384 ---pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
.+++||+|+... ... .-..++..+.+.|||||.+++++
T Consensus 188 ~~~~~~~FD~VFIDa----~K~--~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 188 QNGEGSSYDFAFVDA----DKR--MYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred hcccCCCCCEEEECC----CHH--HHHHHHHHHHHhcCCCcEEEEec
Confidence 246899999533 221 22568999999999999999885
No 172
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.46 E-value=0.00026 Score=68.76 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=61.4
Q ss_pred CCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCC-----CCCCccchh
Q 046488 326 IRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVP-----FFDNTLDLI 391 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LP-----Fpd~SFDlV 391 (480)
.++||+|||++|..+..|++. +..+++++.+... .+...+.+.|. +.+..+. .+-|+ ...+.||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 358999999999999999874 5678888876311 11122222232 3444554 22222 124689999
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+... .... -..++..+.+.|||||.+++++
T Consensus 126 FiDa----~K~~--y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 126 FIDA----DKRN--YLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEES----TGGG--HHHHHHHHHHHEEEEEEEEEET
T ss_pred EEcc----cccc--hhhHHHHHhhhccCCeEEEEcc
Confidence 9643 2222 2458889999999999999985
No 173
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.43 E-value=0.00074 Score=68.30 Aligned_cols=42 Identities=31% Similarity=0.480 Sum_probs=36.8
Q ss_pred CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
..+-||+|+|..+|+.+....+ ..++..++..|+|||++++.
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q-~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQ-ERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHH-HHHHHHHHHHhCCCCEEEEc
Confidence 5677999999999998876554 77999999999999999985
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.43 E-value=0.0005 Score=74.10 Aligned_cols=97 Identities=22% Similarity=0.199 Sum_probs=60.6
Q ss_pred CCeEEEECCCCcHHHHHHhhC------CCEEEEEecCCChh-HHHHH-HHhC---CCCeeeecccCCCCCCCccchheec
Q 046488 326 IRIGLDFSIGTGTFAARMREF------NVTLVSAIINLGAP-FNEMI-ALRG---LVPLYITINQRVPFFDNTLDLIHTT 394 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~------gV~Vv~vd~d~~~~-~~~~i-A~rg---lip~~~~~ae~LPFpd~SFDlV~ss 394 (480)
..+|||||||+|.+....++. .+.|.++.-+..+. .+.+. ...+ .+.++.++.+.+..+. .+|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 358999999999987655443 36777777553222 22222 3333 3556677788777654 89999984
Q ss_pred ccccCccChhcHHHHHHHHHhcccCCcEEE
Q 046488 395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLW 424 (480)
Q Consensus 395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fi 424 (480)
. |-.+.+.+.+...|.-..|.|||||.++
T Consensus 266 l-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 L-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred c-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 3 2234444455668999999999999866
No 175
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0021 Score=62.76 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=74.2
Q ss_pred CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCeeeec----------ccCCCCCCCccchhee
Q 046488 327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPLYITI----------NQRVPFFDNTLDLIHT 393 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~----------ae~LPFpd~SFDlV~s 393 (480)
.+|+|+|+-.|+|+..++++ +..++++|+....+. .++....++ .+.++ ...+|+|.|
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-------~~V~~iq~d~~~~~~~~~l~~~l~--~~~~DvV~s 117 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-------PGVIFLQGDITDEDTLEKLLEALG--GAPVDVVLS 117 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-------CCceEEeeeccCccHHHHHHHHcC--CCCcceEEe
Confidence 48999999999999999886 333677776432211 112222222 22222 334788886
Q ss_pred cccc---cCcc-Ch---hcH-HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcce
Q 046488 394 TRFL---DGWI-DF---VLL-DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREV 465 (480)
Q Consensus 394 s~vL---~h~~-d~---~~l-~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~ 465 (480)
..+= .++. |. ..+ ..++.=..++|+|||.|++-.|.... .+.+...++++ |++++-...........|.
T Consensus 118 D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~--~~~~l~~~~~~-F~~v~~~KP~aSR~~S~E~ 194 (205)
T COG0293 118 DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED--FEDLLKALRRL-FRKVKIFKPKASRKRSREI 194 (205)
T ss_pred cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC--HHHHHHHHHHh-hceeEEecCccccCCCceE
Confidence 4321 1111 11 111 23444455699999999998776443 34445555542 6666543322222234588
Q ss_pred eEEEEEEe
Q 046488 466 FFSAVLEK 473 (480)
Q Consensus 466 ~lsav~qK 473 (480)
|+.+.--|
T Consensus 195 y~v~~~~~ 202 (205)
T COG0293 195 YLVAKGFK 202 (205)
T ss_pred EEEEeccc
Confidence 88765443
No 176
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00033 Score=68.95 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=69.5
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCCCC---eee-ec-ccCCC-
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGLVP---LYI-TI-NQRVP- 382 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rglip---~~~-~~-ae~LP- 382 (480)
++..++.+.. .++||+||.++|..+..|+.. +..+++++.+... .+.+.+++.|.-+ ... ++ .+.+.
T Consensus 50 ~L~~L~~~~~--~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 50 LLRLLARLSG--PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHHhcC--CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 4444555553 358999999999999988863 3467777765321 2223333434322 334 23 23333
Q ss_pred CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
+.+++||+|+.. +....- ..++.++.+.|||||.+++++..
T Consensus 128 ~~~~~fDliFID----adK~~y--p~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 128 LLDGSFDLVFID----ADKADY--PEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred ccCCCccEEEEe----CChhhC--HHHHHHHHHHhCCCcEEEEeecc
Confidence 678999999953 333222 56999999999999999998643
No 177
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.42 E-value=0.0011 Score=69.65 Aligned_cols=114 Identities=14% Similarity=0.143 Sum_probs=64.5
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhH--HHHHHHhCC--CCeeeecccCC-CCCCCccchheecccccCcc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPF--NEMIALRGL--VPLYITINQRV-PFFDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~--~~~iA~rgl--ip~~~~~ae~L-PFpd~SFDlV~ss~vL~h~~ 401 (480)
.+|||+|||+|.++..++.++..+++++.+..+-. ...+...+. +.+..++++.+ +-..+.||+|+..=--..
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G-- 312 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG-- 312 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC--
Confidence 48999999999999999988888888887632211 111112222 23344443332 212246999886411111
Q ss_pred ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 402 DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
....++..+. -++|++.++++ |.+..+.+=...+ .||+-..
T Consensus 313 ---~~~~~l~~l~-~~~p~~ivyvs---c~p~TlaRDl~~L--~gy~l~~ 353 (374)
T TIGR02085 313 ---IGKELCDYLS-QMAPKFILYSS---CNAQTMAKDIAEL--SGYQIER 353 (374)
T ss_pred ---CcHHHHHHHH-hcCCCeEEEEE---eCHHHHHHHHHHh--cCceEEE
Confidence 1123444444 48999998885 4455553322233 5786443
No 178
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.41 E-value=0.0042 Score=67.47 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=65.0
Q ss_pred hHHHhc--CCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHhCCCCeee--ecccCCC-C
Q 046488 314 LIPEVL--DIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALRGLVPLYI--TINQRVP-F 383 (480)
Q Consensus 314 ~I~~vL--~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~rglip~~~--~~ae~LP-F 383 (480)
+...+| +..+|+ +|||+++|.|+=+.++++. .-.+++.+++.. ....+.+.+-|...+.+ .+...++ .
T Consensus 102 l~~~~L~~~~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 102 LPVAALFADDNAPQ--RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA 179 (470)
T ss_pred HHHHHhccCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh
Confidence 444556 455664 8999999999988887764 125667766532 11222333333323222 2333332 3
Q ss_pred CCCccchhe----ecc--cccC-------ccCh------hcHHHHHHHHHhcccCCcEEEEee
Q 046488 384 FDNTLDLIH----TTR--FLDG-------WIDF------VLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 384 pd~SFDlV~----ss~--vL~h-------~~d~------~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
..+.||.|+ |+. ++.. |... ..-..+|....+.|||||+++.+.
T Consensus 180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 456899999 542 2221 2110 001458889999999999998774
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.40 E-value=0.00052 Score=74.86 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCC--hhHHHHHHHhCCCCee--eecc---cCCCCCCCccchheecc
Q 046488 325 EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLG--APFNEMIALRGLVPLY--ITIN---QRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~--~~~~~~iA~rglip~~--~~~a---e~LPFpd~SFDlV~ss~ 395 (480)
+...+||||||.|.|...+|.. ...+++++.... ..+..++..+++-++. ...+ ... |+++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-LPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-cCcccccEEEEEC
Confidence 3468999999999999999987 456677776531 1222333344443332 2222 222 6799999999765
Q ss_pred cccCccCh------hcHHHHHHHHHhcccCCcEEEEe
Q 046488 396 FLDGWIDF------VLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 396 vL~h~~d~------~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
- .+|+.. -.-..++.++.|+|||||.+.+.
T Consensus 426 P-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 P-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred C-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 4 456421 11145899999999999998873
No 180
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.29 E-value=0.001 Score=65.65 Aligned_cols=65 Identities=9% Similarity=0.081 Sum_probs=43.4
Q ss_pred CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccc---hheec
Q 046488 326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLD---LIHTT 394 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFD---lV~ss 394 (480)
..+|||+|||+|.++..|++++..+++++.+. .+......+ ..+....+++..+|++ +|| +|+++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~--~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDP--RLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCH--HHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 35899999999999999999877788887763 232222111 2344556667777765 566 55543
No 181
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.00013 Score=68.68 Aligned_cols=48 Identities=31% Similarity=0.342 Sum_probs=42.5
Q ss_pred ccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 378 NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 378 ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
....+|.|+|.|+|.+.+++.|+.-.+. ..+++|.+|+|||||++-++
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEE
Confidence 4568999999999999999999976543 67999999999999999886
No 182
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.15 E-value=0.0022 Score=64.54 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=59.7
Q ss_pred ccCCCCCC-----CccchheecccccCcc-ChhcHHHHHHHHHhcccCCcEEEEeec-------------cCChhhHHHH
Q 046488 378 NQRVPFFD-----NTLDLIHTTRFLDGWI-DFVLLDFILYDWDRVLRPGGLLWIDSF-------------FCAKEDMNDY 438 (480)
Q Consensus 378 ae~LPFpd-----~SFDlV~ss~vL~h~~-d~~~l~~~L~EI~RVLKPGG~fiI~~f-------------~~~~edL~~~ 438 (480)
.+.-|+.+ ..||+|++.+||.-.. +.+.-..++..+.+.|||||.|++... .+-.-+.+.+
T Consensus 144 ~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v 223 (256)
T PF01234_consen 144 TQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFV 223 (256)
T ss_dssp TSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHH
T ss_pred cCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHH
Confidence 44445544 3599999999997664 444456799999999999999998732 1111123457
Q ss_pred HHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEe
Q 046488 439 LEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEK 473 (480)
Q Consensus 439 ~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qK 473 (480)
.+.++..||....+.. ...-...+.++-++-||
T Consensus 224 ~~al~~aG~~i~~~~~--~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 224 REALEEAGFDIEDLEK--QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp HHHHHHTTEEEEEEEG---TTTB---EEEEEEEEE
T ss_pred HHHHHHcCCEEEeccc--ccCcCCCCcEEEEEEeC
Confidence 7899999998777773 11112234445556666
No 183
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.13 E-value=0.0017 Score=66.51 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCcHHHHHHhhC-C---CEEEEEecCC--ChhHHHHHHHhCCCC---eeeec---ccCCCCCCCccchh
Q 046488 324 GEIRIGLDFSIGTGTFAARMREF-N---VTLVSAIINL--GAPFNEMIALRGLVP---LYITI---NQRVPFFDNTLDLI 391 (480)
Q Consensus 324 g~iR~VLDVGCGtG~fAa~Lae~-g---V~Vv~vd~d~--~~~~~~~iA~rglip---~~~~~---ae~LPFpd~SFDlV 391 (480)
+..-+||||.||.|.......+. . ..+.-.+.+. ....+..++.+|+-. +..++ .+.+.--+-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 33447999999999876544432 2 2222222221 112233456666533 33333 12222224557899
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEee--ccCChhh--------------------HHHHHHHHHHcCcee
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS--FFCAKED--------------------MNDYLEVFKMLKYKK 449 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~--f~~~~ed--------------------L~~~~~~l~~lGfkk 449 (480)
+.+..+..+.|+..+...+.-+.+.|.|||+++... |....+. ..++.++++.+||++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 999998888888877788999999999999999985 6554332 123456777788876
Q ss_pred eE
Q 046488 450 HK 451 (480)
Q Consensus 450 l~ 451 (480)
+.
T Consensus 294 ~~ 295 (311)
T PF12147_consen 294 ID 295 (311)
T ss_pred hh
Confidence 64
No 184
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.11 E-value=0.0056 Score=63.49 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=42.4
Q ss_pred CCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHh-CC---CCeee-ec----ccCCCCCCCccch
Q 046488 324 GEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALR-GL---VPLYI-TI----NQRVPFFDNTLDL 390 (480)
Q Consensus 324 g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~r-gl---ip~~~-~~----ae~LPFpd~SFDl 390 (480)
+...+|||||||+|..+..|+.+ +..+++++++..+- +...++.. +. +.+.. .. .+.+..+++.||+
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 34468999999999888777654 77888888763221 12223333 22 11222 11 1122235778999
Q ss_pred heecc
Q 046488 391 IHTTR 395 (480)
Q Consensus 391 V~ss~ 395 (480)
|+|+=
T Consensus 193 ivcNP 197 (321)
T PRK11727 193 TLCNP 197 (321)
T ss_pred EEeCC
Confidence 99973
No 185
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.10 E-value=0.0038 Score=63.35 Aligned_cols=125 Identities=16% Similarity=0.099 Sum_probs=77.5
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC-----C---CCee------------------------
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG-----L---VPLY------------------------ 374 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg-----l---ip~~------------------------ 374 (480)
.+||==|||.|.++-.++.+|..+.+...+...-...++...+ . .|+.
T Consensus 58 ~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~ 137 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPS 137 (270)
T ss_pred cEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcc
Confidence 4799999999999999999999887776442111111121111 0 0111
Q ss_pred ------------eecccCCCCCC---CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe-----eccCC--h
Q 046488 375 ------------ITINQRVPFFD---NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID-----SFFCA--K 432 (480)
Q Consensus 375 ------------~~~ae~LPFpd---~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~-----~f~~~--~ 432 (480)
.++...+.-++ ++||+|++.+.+.- ...+-.+|..|.++|||||+.|=. +|... .
T Consensus 138 ~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~ 214 (270)
T PF07942_consen 138 SELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIP 214 (270)
T ss_pred cccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCC
Confidence 11111222223 79999998765432 222456999999999999964322 23322 1
Q ss_pred ----hh--HHHHHHHHHHcCceeeEEEE
Q 046488 433 ----ED--MNDYLEVFKMLKYKKHKWVV 454 (480)
Q Consensus 433 ----ed--L~~~~~~l~~lGfkkl~W~~ 454 (480)
-+ ++++..+++.+||+.+....
T Consensus 215 ~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 215 NEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 11 46788999999999887665
No 186
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.05 E-value=0.0021 Score=62.11 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=53.9
Q ss_pred CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCC--CCeeeecc-cCCCCCCCccchheecccccCc
Q 046488 327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGL--VPLYITIN-QRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~a-e~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.+|||+|||+|.++..++.+ ...+++++.+..+- +...+...+. +.++.+++ +.++...+.||+|++.==+.
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~-- 132 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR-- 132 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC--
Confidence 48999999999999865544 45677777652111 1112222222 22333442 22333356799999743211
Q ss_pred cChhcHHHHHHHHHh--cccCCcEEEEeec
Q 046488 401 IDFVLLDFILYDWDR--VLRPGGLLWIDSF 428 (480)
Q Consensus 401 ~d~~~l~~~L~EI~R--VLKPGG~fiI~~f 428 (480)
. .....++.-+.. .|+|+|.+++.+.
T Consensus 133 -~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 133 -K-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred -C-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 1 111234444433 4799999888643
No 187
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.95 E-value=0.0016 Score=65.15 Aligned_cols=96 Identities=14% Similarity=0.053 Sum_probs=61.0
Q ss_pred CCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCCC------CCCccch
Q 046488 326 IRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVPF------FDNTLDL 390 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LPF------pd~SFDl 390 (480)
.++||+||+++|.-+..|+.. +..+++++.+... .+...+...|. +.+..+. .+.||- .+++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 358999999999998888763 4467777765321 12223334443 3344444 233332 2478999
Q ss_pred heecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+... .... -..++..+.+.|||||.+++++
T Consensus 160 iFiDa----dK~~--Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 160 IFVDA----DKDN--YINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEecC----CHHH--hHHHHHHHHHhcCCCeEEEEcC
Confidence 99643 2222 1457888899999999999885
No 188
>PLN02823 spermine synthase
Probab=96.94 E-value=0.008 Score=62.68 Aligned_cols=98 Identities=16% Similarity=0.085 Sum_probs=59.1
Q ss_pred CCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhC-----------CCCeeeecc-cCCCCCCCccch
Q 046488 325 EIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALRG-----------LVPLYITIN-QRVPFFDNTLDL 390 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~a-e~LPFpd~SFDl 390 (480)
..++||.||+|.|..+..+.++ ++ .++.+++| +...+++++- .+.++.+++ +-+.-.+++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD---~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDID---QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECC---HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 3568999999999999988875 33 45555555 3333344321 123344442 223344678999
Q ss_pred heecccccCccC-hh---cHHHHHH-HHHhcccCCcEEEEe
Q 046488 391 IHTTRFLDGWID-FV---LLDFILY-DWDRVLRPGGLLWID 426 (480)
Q Consensus 391 V~ss~vL~h~~d-~~---~l~~~L~-EI~RVLKPGG~fiI~ 426 (480)
|++.. ..++.. +. --..++. .+.+.|+|||.+++.
T Consensus 180 Ii~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 99752 222210 00 0023676 899999999998764
No 189
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.86 E-value=0.0023 Score=65.34 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=46.7
Q ss_pred hcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCC--hhHHHHHHHhC---CCCeeeecccCCCCCCCccchhe
Q 046488 318 VLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLG--APFNEMIALRG---LVPLYITINQRVPFFDNTLDLIH 392 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~--~~~~~~iA~rg---lip~~~~~ae~LPFpd~SFDlV~ 392 (480)
.+.+.++ .+|||||||+|.++..+++.+..++++++|.. ....+.++..+ .+.++.+++...++ ..||.|+
T Consensus 31 ~~~~~~~--~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~Vv 106 (294)
T PTZ00338 31 KAAIKPT--DTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCV 106 (294)
T ss_pred hcCCCCc--CEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEE
Confidence 3345444 38999999999999999998777888887631 11111222222 24455566555544 4689888
Q ss_pred ecc
Q 046488 393 TTR 395 (480)
Q Consensus 393 ss~ 395 (480)
++-
T Consensus 107 aNl 109 (294)
T PTZ00338 107 ANV 109 (294)
T ss_pred ecC
Confidence 753
No 190
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.81 E-value=0.007 Score=61.76 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=61.3
Q ss_pred eEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHH-----HHHHHhCCCCeee-----ecccCCCCCCCccchheecc
Q 046488 328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFN-----EMIALRGLVPLYI-----TINQRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~-----~~iA~rglip~~~-----~~ae~LPFpd~SFDlV~ss~ 395 (480)
.+||+|||+|..+..++.. ..++++++.+..+..+ .+....|.+...+ +.....+..++.+|+++|+=
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 7999999999999888764 4566666654322111 1222334454442 22556677789999999862
Q ss_pred cccCcc-------------C----------hhcHHHHHHHHHhcccCCcEEEEe
Q 046488 396 FLDGWI-------------D----------FVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 396 vL~h~~-------------d----------~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
-...-. + .+.+-.++.=+-|.|+|||.+++.
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 111000 0 112234667788999999998885
No 191
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0016 Score=64.00 Aligned_cols=91 Identities=21% Similarity=0.205 Sum_probs=60.5
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhhC----CCEEEEEecCCChhHHHHH-----------------HHhCCCCeeeeccc
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMREF----NVTLVSAIINLGAPFNEMI-----------------ALRGLVPLYITINQ 379 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~~~~~~~i-----------------A~rglip~~~~~ae 379 (480)
+.+|- ..||+|.|+|.+++.++.. |..+++++.- +.+... -+++...++++++.
T Consensus 80 L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~---~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 80 LQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGIEHI---PELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR 154 (237)
T ss_pred hccCc--ceeecCCCccHHHHHHHHHhcCCCccccchhhh---HHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence 66774 7999999999988777642 4433555421 111111 12333445667766
Q ss_pred CCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488 380 RVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 380 ~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI 425 (480)
..--+.+.||.||+.... ....+++...|+|||.+++
T Consensus 155 ~g~~e~a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 155 KGYAEQAPYDAIHVGAAA---------SELPQELLDQLKPGGRLLI 191 (237)
T ss_pred ccCCccCCcceEEEccCc---------cccHHHHHHhhccCCeEEE
Confidence 666677889999987443 2357788899999999988
No 192
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0041 Score=60.25 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=40.8
Q ss_pred CCeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhH-HHHHHHh--CCCCeeeecccCCCCCCCccchheec
Q 046488 326 IRIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPF-NEMIALR--GLVPLYITINQRVPFFDNTLDLIHTT 394 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~-~~~iA~r--glip~~~~~ae~LPFpd~SFDlV~ss 394 (480)
.++|+|+|||||.++...+-.| ..|+++++|..+-. ..+-+.+ +.+.++.++.. ..+..||.|+.+
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~---~~~~~~dtvimN 115 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVS---DFRGKFDTVIMN 115 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchh---hcCCccceEEEC
Confidence 4579999999999998888777 46778887742211 1122222 22334444433 345678877765
No 193
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.59 E-value=0.0096 Score=57.05 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=69.3
Q ss_pred eEEEECCCCcHHHHHHhh--CCCEEEEEecCCC-hhHHHHHHHh-CCC--CeeeecccCCCCCCCccchheecccccCcc
Q 046488 328 IGLDFSIGTGTFAARMRE--FNVTLVSAIINLG-APFNEMIALR-GLV--PLYITINQRVPFFDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~~-~~~~~~iA~r-gli--p~~~~~ae~LPFpd~SFDlV~ss~vL~h~~ 401 (480)
+++|||+|.|.-+..|+= -...++-++...- ..++..+..+ ++- .++.+.+|. +-...+||+|++.. +..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA-v~~l- 127 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA-VAPL- 127 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES-SSSH-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh-hcCH-
Confidence 699999999986665543 2456655553311 1233444433 332 234444666 67789999999744 4322
Q ss_pred ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 402 DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 402 d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
..++.-+.+.|||||.+++.--....++++.....++..+.+...
T Consensus 128 -----~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 128 -----DKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp -----HHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred -----HHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence 357888889999999988753333345555556666666655443
No 194
>PRK00536 speE spermidine synthase; Provisional
Probab=96.58 E-value=0.021 Score=57.69 Aligned_cols=109 Identities=11% Similarity=-0.025 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-------C----CCCeeeecccCCCCCCCccchhe
Q 046488 324 GEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-------G----LVPLYITINQRVPFFDNTLDLIH 392 (480)
Q Consensus 324 g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-------g----lip~~~~~ae~LPFpd~SFDlV~ 392 (480)
++.++||=||.|-|..+..+.++.-.++-+++| +.....+++ + .+.++.. .. .-..++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID---~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD---EKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECC---HHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEE
Confidence 456899999999999999999985455555555 222222222 1 1111111 11 11247899999
Q ss_pred ecccccCccChhcHHHHHHHHHhcccCCcEEEEee---ccCChhhHHHHHHHHHHcCce
Q 046488 393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS---FFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~---f~~~~edL~~~~~~l~~lGfk 448 (480)
..... + ..++..++|.|+|||.++... |+ ..+....+...++. .|.
T Consensus 145 vDs~~----~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~-~~~~~~~i~~~l~~-~F~ 193 (262)
T PRK00536 145 CLQEP----D----IHKIDGLKRMLKEDGVFISVAKHPLL-EHVSMQNALKNMGD-FFS 193 (262)
T ss_pred EcCCC----C----hHHHHHHHHhcCCCcEEEECCCCccc-CHHHHHHHHHHHHh-hCC
Confidence 76431 2 247899999999999988852 33 23334444444444 355
No 195
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.018 Score=55.81 Aligned_cols=124 Identities=16% Similarity=0.204 Sum_probs=70.7
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChh-HHHHHHHhCC--CCeeeec-ccCCCCCCCccchhee
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAP-FNEMIALRGL--VPLYITI-NQRVPFFDNTLDLIHT 393 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~-~~~~iA~rgl--ip~~~~~-ae~LPFpd~SFDlV~s 393 (480)
++......+||||||+|..+..|++. ++..+.+|++..+- .-..-|+... +..+..+ ...+ ..++.|+++.
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l--~~~~VDvLvf 116 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL--RNESVDVLVF 116 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh--ccCCccEEEE
Confidence 33333558999999999999998875 45667777764221 1112233332 2333222 2212 1266666654
Q ss_pred ccccc--------------Ccc----ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 394 TRFLD--------------GWI----DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 394 s~vL~--------------h~~----d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
+--.. -|. ....+..++..+..+|-|.|.|++....... .+++..+++..||.
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~--p~ei~k~l~~~g~~ 187 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK--PKEILKILEKKGYG 187 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC--HHHHHHHHhhcccc
Confidence 32111 121 1222466888888999999999986543332 34555677787775
No 196
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.46 E-value=0.0016 Score=64.01 Aligned_cols=134 Identities=22% Similarity=0.291 Sum_probs=83.2
Q ss_pred HHhcCCC---CC-CCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchh
Q 046488 316 PEVLDIK---PG-EIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLI 391 (480)
Q Consensus 316 ~~vL~l~---~g-~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV 391 (480)
.++|.+. ++ +..++||+|+|.|..+..++..--.|.++.++ ..|..+...++. .+ ++..+ .---+=.||+|
T Consensus 99 ~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS--~tMr~rL~kk~y-nV-l~~~e-w~~t~~k~dli 173 (288)
T KOG3987|consen 99 RKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELS--WTMRDRLKKKNY-NV-LTEIE-WLQTDVKLDLI 173 (288)
T ss_pred HHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhh--HHHHHHHhhcCC-ce-eeehh-hhhcCceeehH
Confidence 3555543 22 34689999999999999988753333333322 234444443332 22 12111 11124569999
Q ss_pred eecccccCccChhcHHHHHHHHHhcccC-CcEEEEe------e---------ccCCh-----------hhHHHHHHHHHH
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRP-GGLLWID------S---------FFCAK-----------EDMNDYLEVFKM 444 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKP-GG~fiI~------~---------f~~~~-----------edL~~~~~~l~~ 444 (480)
.|-..|...-++ .++|.+|+-||+| .|+++++ + +.++. ++...+.++++.
T Consensus 174 ~clNlLDRc~~p---~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~ 250 (288)
T KOG3987|consen 174 LCLNLLDRCFDP---FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRN 250 (288)
T ss_pred HHHHHHHhhcCh---HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHh
Confidence 998877655555 4699999999999 9998875 1 11221 223457788999
Q ss_pred cCceeeEEEEeec
Q 046488 445 LKYKKHKWVVVPK 457 (480)
Q Consensus 445 lGfkkl~W~~~~k 457 (480)
.||..-.|...+-
T Consensus 251 ~g~~veawTrlPY 263 (288)
T KOG3987|consen 251 CGYRVEAWTRLPY 263 (288)
T ss_pred cCchhhhhhcCCe
Confidence 9998777866543
No 197
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.33 E-value=0.058 Score=53.57 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=76.4
Q ss_pred cCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChh---HHHHHHHhCC--CCeeeeccc-C--CCCCCCc
Q 046488 319 LDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAP---FNEMIALRGL--VPLYITINQ-R--VPFFDNT 387 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~---~~~~iA~rgl--ip~~~~~ae-~--LPFpd~S 387 (480)
+.+++|. +||-+|..+|+...++++- | -.|.++..+ +. .+...|+++. +|. +.++. . ...-=+.
T Consensus 69 ~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs--~r~~rdL~~la~~R~NIiPI-l~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFS--PRSMRDLLNLAKKRPNIIPI-LEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESS--HHHHHHHHHHHHHSTTEEEE-ES-TTSGGGGTTTS--
T ss_pred cCCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEec--chhHHHHHHHhccCCceeee-eccCCChHHhhccccc
Confidence 4566775 8999999999999988874 2 134444432 22 2234555542 343 33322 1 1111237
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee------ccCChhh-HHHHHHHHHHcCceeeEEEEeeccCC
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS------FFCAKED-MNDYLEVFKMLKYKKHKWVVVPKRDK 460 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~------f~~~~ed-L~~~~~~l~~lGfkkl~W~~~~k~d~ 460 (480)
+|+|++.-+ .+++.+.++..+...||+||.+++.- -....++ ...-.+.++..||+.+.-.....-
T Consensus 144 VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy-- 216 (229)
T PF01269_consen 144 VDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPY-- 216 (229)
T ss_dssp EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTT--
T ss_pred ccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCC--
Confidence 888886432 34444678888999999999998861 1222222 233445666667876654333222
Q ss_pred CCcceeEEEEEEe
Q 046488 461 DDREVFFSAVLEK 473 (480)
Q Consensus 461 ~~~E~~lsav~qK 473 (480)
.++-..+.+.++|
T Consensus 217 ~~dH~~vv~~y~~ 229 (229)
T PF01269_consen 217 ERDHAMVVGRYRK 229 (229)
T ss_dssp STTEEEEEEEE--
T ss_pred CCCcEEEEEEecC
Confidence 2355555666665
No 198
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.33 E-value=0.007 Score=58.78 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=55.3
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhh--CCCEEEEEecCCCh-hHHH-HHHHhCC---CCeeeecccCCCCCCCccchhee
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMRE--FNVTLVSAIINLGA-PFNE-MIALRGL---VPLYITINQRVPFFDNTLDLIHT 393 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~~~-~~~~-~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~s 393 (480)
+++++ +|||+-||.|.|+..+++ ++..+++.+++..+ ..+. .+...+. +..+.+++..++- .+.||-|++
T Consensus 99 v~~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim 175 (200)
T PF02475_consen 99 VKPGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIM 175 (200)
T ss_dssp --TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE
T ss_pred CCcce--EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEE
Confidence 45554 899999999999999998 57789998877321 2222 2333332 2334566666554 889996665
Q ss_pred cccccCccChhcHHHHHHHHHhcccCCcEEE
Q 046488 394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLW 424 (480)
Q Consensus 394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fi 424 (480)
+++... ..+|.++.+.+|+||.+-
T Consensus 176 -----~lp~~~--~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 176 -----NLPESS--LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -------TSSG--GGGHHHHHHHEEEEEEEE
T ss_pred -----CChHHH--HHHHHHHHHHhcCCcEEE
Confidence 333322 248899999999999753
No 199
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.28 E-value=0.016 Score=55.28 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=52.2
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChh--HHHHHHHhCC---CCeeeecc-cCCC-C-CC-Cccchheeccc
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAP--FNEMIALRGL---VPLYITIN-QRVP-F-FD-NTLDLIHTTRF 396 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~a-e~LP-F-pd-~SFDlV~ss~v 396 (480)
.+|||++||+|.++..++++|. .++.++.+..+. ....+...+. +.++.+++ ..+. + .. ..||+|+..=-
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP 130 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP 130 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC
Confidence 4799999999999999999986 567766553211 1112222222 22333333 2222 1 12 24787775311
Q ss_pred ccCccChhcHHHHHHHH--HhcccCCcEEEEee
Q 046488 397 LDGWIDFVLLDFILYDW--DRVLRPGGLLWIDS 427 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI--~RVLKPGG~fiI~~ 427 (480)
+.. .....++.-+ ...|+++|.+++-+
T Consensus 131 y~~----~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 131 FFN----GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CCC----CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 111 1112233333 45799999887743
No 200
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.18 Score=52.93 Aligned_cols=115 Identities=25% Similarity=0.242 Sum_probs=67.4
Q ss_pred hhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC----CCEEEEEecCCC--hhHHHHHHHhCCCC--eeeecccCCC
Q 046488 311 ADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF----NVTLVSAIINLG--APFNEMIALRGLVP--LYITINQRVP 382 (480)
Q Consensus 311 ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~--~~~~~~iA~rglip--~~~~~ae~LP 382 (480)
+..+...+|+..+|+ +|||+.++.|+=+.++++. +..|+++|.+.. ....+++.+-|..+ ....++..++
T Consensus 144 sS~l~a~~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~ 221 (355)
T COG0144 144 ASQLPALVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA 221 (355)
T ss_pred HHHHHHHHcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccc
Confidence 344556788877775 8999999999877777664 455667665421 11222333334333 2233333333
Q ss_pred ---CCCCccchhee------cccccCccC-------h------hcHHHHHHHHHhcccCCcEEEEee
Q 046488 383 ---FFDNTLDLIHT------TRFLDGWID-------F------VLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 383 ---Fpd~SFDlV~s------s~vL~h~~d-------~------~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
.....||.|.. ..++..-++ . ..-..+|....++|||||.++.+.
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 22235999984 233321111 0 011458899999999999999874
No 201
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.24 E-value=0.0082 Score=62.95 Aligned_cols=84 Identities=10% Similarity=0.023 Sum_probs=55.7
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcH
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLL 406 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l 406 (480)
.++||+||++|+|+..|.++|..|+++|.. ++...+...+.+..+..+.-++.-+.+.+|+|+|..+- .+.
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g---~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve----~P~-- 283 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMFVTAVDNG---PMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE----KPA-- 283 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCEEEEEech---hcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc----CHH--
Confidence 489999999999999999999999998844 33334445555555554433322127789999997653 332
Q ss_pred HHHHHHHHhcccCC
Q 046488 407 DFILYDWDRVLRPG 420 (480)
Q Consensus 407 ~~~L~EI~RVLKPG 420 (480)
.++.-|.+-|..|
T Consensus 284 -rva~lm~~Wl~~g 296 (357)
T PRK11760 284 -RVAELMAQWLVNG 296 (357)
T ss_pred -HHHHHHHHHHhcC
Confidence 3445555555444
No 202
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.19 E-value=0.015 Score=57.85 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=66.8
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCC--
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVP-- 382 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LP-- 382 (480)
++..++.+-.. +++||||.=||.-+..+|.. +-.+++++++... -..+.+...|. +.++++. ++.|+
T Consensus 64 fl~~li~~~~a--k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 64 FLQMLIRLLNA--KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHHhCC--ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 44445554333 48999998888765555432 4567777766321 12233344443 3444443 22221
Q ss_pred ---CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 383 ---FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 383 ---Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
...++||+++ +.+|.+.- ...+.+.-|.||+||.++++.
T Consensus 142 ~~~~~~~tfDfaF----vDadK~nY--~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 142 LADGESGTFDFAF----VDADKDNY--SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HhcCCCCceeEEE----EccchHHH--HHHHHHHHhhcccccEEEEec
Confidence 3689999998 56676654 468999999999999999985
No 203
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.17 E-value=0.01 Score=62.86 Aligned_cols=93 Identities=19% Similarity=0.172 Sum_probs=56.5
Q ss_pred CeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChh--HHHHHHHhCCC--CeeeecccCCCCCCCccchheecccccCc
Q 046488 327 RIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAP--FNEMIALRGLV--PLYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~--~~~~iA~rgli--p~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.+|||++||+|.++..++.. ++ .|++++.+..+. +...+...+.- .+..+++..+....+.||+|... ..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD----P~ 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID----PF 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC----CC
Confidence 37999999999999999764 43 677777653211 11122222321 13344444332114679999863 11
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
..+ ..++....+.++|||+++++
T Consensus 135 Gs~---~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 GSP---APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCc---HHHHHHHHHHhcCCCEEEEE
Confidence 222 24677778889999999997
No 204
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.15 E-value=0.013 Score=55.40 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=56.2
Q ss_pred CeEEEECCCCcHHHHHHhh--CCCE---------EEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccch
Q 046488 327 RIGLDFSIGTGTFAARMRE--FNVT---------LVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDL 390 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae--~gV~---------Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDl 390 (480)
..|||-=||+|++....+. .++. +++.|.+..+- +...+...+. +.+...++..+|+.++++|.
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~ 109 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDA 109 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCE
Confidence 4899999999999865543 3444 67777663211 1112222222 23334568899998999999
Q ss_pred heecccccC-ccC----hhcHHHHHHHHHhcccCCcEEEE
Q 046488 391 IHTTRFLDG-WID----FVLLDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 391 V~ss~vL~h-~~d----~~~l~~~L~EI~RVLKPGG~fiI 425 (480)
|++.-=.-. ... ......++.++.|+|+|...+++
T Consensus 110 IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 110 IVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp EEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred EEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 998621110 011 11124578999999999444444
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.0087 Score=60.43 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=58.2
Q ss_pred cccccccccccCCCCCCchhhhhHHHhc---CCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHH-
Q 046488 292 HEMPRWIKNVDIDPITNLTADFLIPEVL---DIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL- 367 (480)
Q Consensus 292 k~~q~W~~~~gf~~~~~~~ad~~I~~vL---~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~- 367 (480)
+-.|+|+.... .++.++ ++.++ .+||+||+|.|.++..|++++..++++.+|. ........
T Consensus 7 ~~GQnFL~d~~-----------v~~kIv~~a~~~~~--d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~--~l~~~L~~~ 71 (259)
T COG0030 7 RLGQNFLIDKN-----------VIDKIVEAANISPG--DNVLEIGPGLGALTEPLLERAARVTAIEIDR--RLAEVLKER 71 (259)
T ss_pred CcccccccCHH-----------HHHHHHHhcCCCCC--CeEEEECCCCCHHHHHHHhhcCeEEEEEeCH--HHHHHHHHh
Confidence 45677776431 234333 44443 4899999999999999999988888888773 22222222
Q ss_pred ---hCCCCeeeecccCCCCCCC-ccchheec
Q 046488 368 ---RGLVPLYITINQRVPFFDN-TLDLIHTT 394 (480)
Q Consensus 368 ---rglip~~~~~ae~LPFpd~-SFDlV~ss 394 (480)
...+.++.+++-..+|++. .++.|+++
T Consensus 72 ~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 72 FAPYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred cccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 2335566777777777665 57777765
No 206
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.044 Score=55.99 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHhCC-----------CCeeeecc-cCCCCCCCccc
Q 046488 324 GEIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALRGL-----------VPLYITIN-QRVPFFDNTLD 389 (480)
Q Consensus 324 g~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~rgl-----------ip~~~~~a-e~LPFpd~SFD 389 (480)
++.++||=||.|.|+.+..+.+++ -.++.+++| +....++++-. +.+.++++ +-+.-..++||
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID---~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEID---PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcC---HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 455799999999999999999874 234455554 34344443321 12333431 12222234899
Q ss_pred hheecccccCccC----hhcHHHHHHHHHhcccCCcEEEEe---eccCChhhHHHHHHHHHHc
Q 046488 390 LIHTTRFLDGWID----FVLLDFILYDWDRVLRPGGLLWID---SFFCAKEDMNDYLEVFKML 445 (480)
Q Consensus 390 lV~ss~vL~h~~d----~~~l~~~L~EI~RVLKPGG~fiI~---~f~~~~edL~~~~~~l~~l 445 (480)
+|++... ..... .. ..++..++|.|+|+|.++.. .|+.. +.+......++++
T Consensus 152 vIi~D~t-dp~gp~~~Lft--~eFy~~~~~~L~~~Gi~v~q~~~~~~~~-~~~~~~~~~~~~v 210 (282)
T COG0421 152 VIIVDST-DPVGPAEALFT--EEFYEGCRRALKEDGIFVAQAGSPFLQD-EEIALAYRNVSRV 210 (282)
T ss_pred EEEEcCC-CCCCcccccCC--HHHHHHHHHhcCCCcEEEEecCCcccch-HHHHHHHHHHHhh
Confidence 9997432 22111 01 45999999999999998886 34444 3333333344443
No 207
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.00 E-value=0.036 Score=58.09 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=25.1
Q ss_pred eEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488 328 IGLDFSIGTGTFAARMREFNVTLVSAIIN 356 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d 356 (480)
+|||++||+|.++..+++....+++++.+
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~vE~~ 237 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLATEIS 237 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEEEECC
Confidence 69999999999999999876678888765
No 208
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.96 E-value=0.061 Score=52.45 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=72.1
Q ss_pred CeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHHHHHHhCCCCee----------eecccCCCCCCCccchhee
Q 046488 327 RIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNEMIALRGLVPLY----------ITINQRVPFFDNTLDLIHT 393 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~~iA~rglip~~----------~~~ae~LPFpd~SFDlV~s 393 (480)
.+|||+||..|+|+....++ + -.+.++|+-..++ -+|...+. ....|.| |++..|+|++
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p------~~Ga~~i~~~dvtdp~~~~ki~e~l--p~r~VdvVlS 142 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP------PEGATIIQGNDVTDPETYRKIFEAL--PNRPVDVVLS 142 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC------CCCcccccccccCCHHHHHHHHHhC--CCCcccEEEe
Confidence 38999999999999988876 2 2355655421111 12211111 1124455 5788999987
Q ss_pred cccccCc-----cChhcH----HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcc
Q 046488 394 TRFLDGW-----IDFVLL----DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDRE 464 (480)
Q Consensus 394 s~vL~h~-----~d~~~l----~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E 464 (480)
... .+- .|...+ ..++.=..-.++|+|.|+.--|-...+ ..++..+... |++++-....-..++..|
T Consensus 143 DMa-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~--~~l~r~l~~~-f~~Vk~vKP~Asr~eS~E 218 (232)
T KOG4589|consen 143 DMA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE--ALLQRRLQAV-FTNVKKVKPDASRDESAE 218 (232)
T ss_pred ccC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch--HHHHHHHHHH-hhhcEeeCCccccccccc
Confidence 532 111 121100 123333345678999998876654433 2233222221 444432221111125679
Q ss_pred eeEEEEEEeCCC
Q 046488 465 VFFSAVLEKPPR 476 (480)
Q Consensus 465 ~~lsav~qKP~~ 476 (480)
.|+.+.=.|+..
T Consensus 219 ~y~v~~~~k~~~ 230 (232)
T KOG4589|consen 219 TYLVCLNFKGNV 230 (232)
T ss_pred eeeeeeeccCcC
Confidence 999887666643
No 209
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.94 E-value=0.041 Score=52.73 Aligned_cols=106 Identities=17% Similarity=0.010 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhhCCCE---EEEEecCCChhHHHHHHHh-CCCCeeeecccCCC-----CCCCccchh
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMREFNVT---LVSAIINLGAPFNEMIALR-GLVPLYITINQRVP-----FFDNTLDLI 391 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV~---Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LP-----Fpd~SFDlV 391 (480)
+.+.....||++|.|||-++.++.++|+. .+.+.. +.++.....+. -.+.++.+++..+- +.+..||.|
T Consensus 44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~--~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEY--SPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEe--CHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeE
Confidence 45555568999999999999999998763 333332 23343332221 12233334433332 678899999
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
+|.--+.+++-... -+++.++.--|++||-++-..+-
T Consensus 122 iS~lPll~~P~~~~-iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 122 ISGLPLLNFPMHRR-IAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred EeccccccCcHHHH-HHHHHHHHHhcCCCCeEEEEEec
Confidence 99877766664443 45899999999999998876554
No 210
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.88 E-value=0.18 Score=50.29 Aligned_cols=119 Identities=16% Similarity=0.080 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHh-----------CCCCeeeecccC-CCCCCC-ccc
Q 046488 325 EIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALR-----------GLVPLYITINQR-VPFFDN-TLD 389 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~r-----------glip~~~~~ae~-LPFpd~-SFD 389 (480)
+.++||=||.|.|..+..+.++. ..+..+++| +....++++ ..+.++.+++.. +--..+ .||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD---~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEID---PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES----HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecC---hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 45789999999999999999874 345555554 233333222 123344544211 112233 899
Q ss_pred hheecccccCccChh--cHHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCc
Q 046488 390 LIHTTRFLDGWIDFV--LLDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKY 447 (480)
Q Consensus 390 lV~ss~vL~h~~d~~--~l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGf 447 (480)
+|+....- ...... --..+++.+.|.|+|||.+++.. .....+.+..+...++....
T Consensus 153 vIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 153 VIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp EEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred EEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 99974322 211110 01358999999999999988753 33334445556667776643
No 211
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.87 E-value=0.038 Score=54.13 Aligned_cols=128 Identities=15% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCCCCCCCeEEEECCCCcHHHHHHhhC-CC--EEEEEecCCCh-------hHHHHHHHhCC---CCeeeecccCCCCCCC
Q 046488 320 DIKPGEIRIGLDFSIGTGTFAARMREF-NV--TLVSAIINLGA-------PFNEMIALRGL---VPLYITINQRVPFFDN 386 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV--~Vv~vd~d~~~-------~~~~~iA~rgl---ip~~~~~ae~LPFpd~ 386 (480)
.+++|. +|+|+=-|.|.|+.-++.. |. .|.++.++... +....++.+.. ...+....-.++ +.+
T Consensus 45 Glkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 45 GLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred ccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCC
Confidence 467775 8999999999999988774 22 45566654321 11112222211 112222223343 445
Q ss_pred ccchheecccccCcc----ChhcHHHHHHHHHhcccCCcEEEEeeccCCh-----hh-------HHHHHHHHHHcCceee
Q 046488 387 TLDLIHTTRFLDGWI----DFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-----ED-------MNDYLEVFKMLKYKKH 450 (480)
Q Consensus 387 SFDlV~ss~vL~h~~----d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-----ed-------L~~~~~~l~~lGfkkl 450 (480)
..|++.....-|.+. .......+..++++.|||||.+.+.+..... +. ........+..||+-.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ 201 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLE 201 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceee
Confidence 555555422111110 1223377999999999999998886432211 11 1234566677788743
No 212
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.78 E-value=0.026 Score=59.15 Aligned_cols=98 Identities=12% Similarity=0.157 Sum_probs=56.1
Q ss_pred CCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhCCC----CeeeecccCCCCCCCccchheecccccC
Q 046488 325 EIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRGLV----PLYITINQRVPFFDNTLDLIHTTRFLDG 399 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rgli----p~~~~~ae~LPFpd~SFDlV~ss~vL~h 399 (480)
..+.|||||||+|.++...+..|. .+.++.-+.-++..++..+.+++ .++-+-.|.+.+| +..|++++--.-.-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhh
Confidence 457999999999998888877764 34555433212222222222222 2223446666654 56899997322111
Q ss_pred ccChhcHHHHHHHHHhcccCCcEEE
Q 046488 400 WIDFVLLDFILYDWDRVLRPGGLLW 424 (480)
Q Consensus 400 ~~d~~~l~~~L~EI~RVLKPGG~fi 424 (480)
+.+...++ ...-.+|-|||.|..+
T Consensus 256 L~NERMLE-sYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLE-SYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhHHHHH-HHHHHHhhcCCCCccc
Confidence 12222233 4455679999999865
No 213
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.67 E-value=0.079 Score=53.50 Aligned_cols=94 Identities=19% Similarity=0.142 Sum_probs=54.0
Q ss_pred CCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHH---HHHHhCCCCeee----e-c-ccCCCCCCCccchhee
Q 046488 326 IRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNE---MIALRGLVPLYI----T-I-NQRVPFFDNTLDLIHT 393 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~---~iA~rglip~~~----~-~-ae~LPFpd~SFDlV~s 393 (480)
.++|||+|||+|.-.-++.+. + .+++.++.+ ..+.. .+.... ..... . . .+..++... |+|++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s--~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--DLvi~ 108 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRS--PEMLELAKRLLRAG-PNNRNAEWRRVLYRDFLPFPPD--DLVIA 108 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCC--HHHHHHHHHHHhcc-cccccchhhhhhhcccccCCCC--cEEEE
Confidence 458999999999866555542 1 234444433 23322 122221 11110 1 1 223444333 99999
Q ss_pred cccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+++|..+.+ .....++..+.+.+.+ +++|.+
T Consensus 109 s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVE 139 (274)
T PF09243_consen 109 SYVLNELPS-AARAELVRSLWNKTAP--VLVLVE 139 (274)
T ss_pred ehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEc
Confidence 999999887 4456677777777766 777653
No 214
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=0.16 Score=51.95 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=79.0
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CC--EEEEEecCC--ChhHHHHHHHhCC---CCeeeec--ccCCCC
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF-NV--TLVSAIINL--GAPFNEMIALRGL---VPLYITI--NQRVPF 383 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV--~Vv~vd~d~--~~~~~~~iA~rgl---ip~~~~~--ae~LPF 383 (480)
+|-.+|++.||. +|++-|.|+|+++.++++. +. .+.+++... ...+.+.+.+.+. +.+.+.+ ...++-
T Consensus 96 ~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 96 MILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 566789999997 8999999999999888864 22 345565421 1122333333332 2344444 233455
Q ss_pred CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
.+..+|+|+. .++.+. .++--++.+||-+|. .+..|-.--|++++-.+.+..+||..+.
T Consensus 174 ks~~aDaVFL-----DlPaPw---~AiPha~~~lk~~g~-r~csFSPCIEQvqrtce~l~~~gf~~i~ 232 (314)
T KOG2915|consen 174 KSLKADAVFL-----DLPAPW---EAIPHAAKILKDEGG-RLCSFSPCIEQVQRTCEALRSLGFIEIE 232 (314)
T ss_pred cccccceEEE-----cCCChh---hhhhhhHHHhhhcCc-eEEeccHHHHHHHHHHHHHHhCCCceEE
Confidence 5788998884 233332 256667779999885 2223443446666767888888987653
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.01 E-value=0.07 Score=53.88 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=58.0
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhh---------CCCEEEEEecCCChhHHH--HHHHhCC--C--Ceeeec-
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMRE---------FNVTLVSAIINLGAPFNE--MIALRGL--V--PLYITI- 377 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae---------~gV~Vv~vd~d~~~~~~~--~iA~rgl--i--p~~~~~- 377 (480)
++.+++...++ .+|+|-.||+|.|...+.+ ....+.|++.+...-... .+...+. . ....++
T Consensus 37 l~~~~~~~~~~--~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~ 114 (311)
T PF02384_consen 37 LMVKLLNPKKG--DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDS 114 (311)
T ss_dssp HHHHHHTT-TT--EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-T
T ss_pred HHHhhhhcccc--ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccc
Confidence 45556654444 4799999999999877765 356778888763221111 1222331 1 122333
Q ss_pred ccCCCCC-CCccchheecc--cccCccC----------------hhcHHHHHHHHHhcccCCcEEEEe
Q 046488 378 NQRVPFF-DNTLDLIHTTR--FLDGWID----------------FVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 378 ae~LPFp-d~SFDlV~ss~--vL~h~~d----------------~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
.....+. ...||+|++.= ....|.+ ...-..++..+.+.||+||++.+.
T Consensus 115 l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 115 LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 2222222 57899999852 2111110 001124778899999999997654
No 216
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=94.91 E-value=0.42 Score=47.18 Aligned_cols=118 Identities=11% Similarity=0.025 Sum_probs=71.8
Q ss_pred CeEEEECCCCcHHHHHHh--hCCCEEEEEecCC-ChhHHHHHHHhCCCC---eeeecccCCCCCCCccchheecccccCc
Q 046488 327 RIGLDFSIGTGTFAARMR--EFNVTLVSAIINL-GAPFNEMIALRGLVP---LYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~La--e~gV~Vv~vd~d~-~~~~~~~iA~rglip---~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.+++|||.|.|.-+..|+ ..+..++-++... -..++.++..+-..+ ++.+-+|.+.-....||+|+|. ++..+
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsR-Ava~L 147 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSR-AVASL 147 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEee-hccch
Confidence 589999999998777665 2244444343321 123555555553333 3445566665322229999974 44332
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
..++.=....||+||.++...+....+++.+........|+....
T Consensus 148 ------~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 148 ------NVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred ------HHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEE
Confidence 234555678899999987665565666666666677777766544
No 217
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.73 E-value=0.043 Score=59.65 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=66.9
Q ss_pred eEEEECCCCcHHHHHHhhCCCE-EEEEecCCChhHHHHHHHhC-----CCCeeeecccCCCCCCCccchheecccccCcc
Q 046488 328 IGLDFSIGTGTFAARMREFNVT-LVSAIINLGAPFNEMIALRG-----LVPLYITINQRVPFFDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~~~~~iA~rg-----lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~ 401 (480)
++|-+|||.-.+...+-+-|.. +++++.+ ...-...-.++ .......+...+.|+|+|||+|+--..+++.-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S--~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSS--SVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceecccc--HHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 7999999999999988887653 4455443 22222111111 12223455888999999999999887777654
Q ss_pred Chh-------cHHHHHHHHHhcccCCcEEEEeec
Q 046488 402 DFV-------LLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 402 d~~-------~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
.++ .....+.|+.|||+|||.++...+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 221 124568999999999999876544
No 218
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=94.56 E-value=0.1 Score=55.69 Aligned_cols=101 Identities=20% Similarity=0.049 Sum_probs=64.3
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCCCC----eeeec-ccCCCC---CCCccchheec-
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGLVP----LYITI-NQRVPF---FDNTLDLIHTT- 394 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rglip----~~~~~-ae~LPF---pd~SFDlV~ss- 394 (480)
++|||+=|=||.|+.+.+..|. .|+++|++..+ -+.+++...|.-. ++.++ .+-|.. ....||+|+..
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDP 298 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDP 298 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECC
Confidence 4899999999999999999888 88898876321 1223444444322 33333 222222 34499999962
Q ss_pred --cccc---CccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 395 --RFLD---GWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 395 --~vL~---h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
++=. -|.-......++....++|+|||.++++.
T Consensus 299 PsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 299 PSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred cccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 1110 02111123568899999999999998863
No 219
>PRK13699 putative methylase; Provisional
Probab=94.48 E-value=0.078 Score=52.22 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=31.0
Q ss_pred HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee---eEEEE
Q 046488 407 DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK---HKWVV 454 (480)
Q Consensus 407 ~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk---l~W~~ 454 (480)
...+.|++|||||||.+++.. ....+..+...++..||.- +-|..
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~---~~~~~~~~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY---GWNRVDRFMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe---ccccHHHHHHHHHHCCCEEeeEEEEEC
Confidence 568999999999999987631 1112344566778889863 45764
No 220
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.44 E-value=0.69 Score=48.68 Aligned_cols=126 Identities=21% Similarity=0.114 Sum_probs=81.6
Q ss_pred CCCCCeEEEECCCCcHHHHHHhhCCCE-EEEEecCCCh-h-HHHHHHHhCC---CCeeeecccCCCCCCCccchheeccc
Q 046488 323 PGEIRIGLDFSIGTGTFAARMREFNVT-LVSAIINLGA-P-FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRF 396 (480)
Q Consensus 323 ~g~iR~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~-~-~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~v 396 (480)
+|+ +|||+=+|.|.|+..++.+|.. |+++++|..+ . ..+.+.+.+. +..+++++..++..-+.||-|++...
T Consensus 188 ~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 188 EGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred CCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 455 8999999999999999998755 8888877422 1 2233444443 33566777777766689998886442
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhh----HHHHHHHHHHcCce--eeEEEEeec
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKED----MNDYLEVFKMLKYK--KHKWVVVPK 457 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~ed----L~~~~~~l~~lGfk--kl~W~~~~k 457 (480)
... ..++....+.||+||.+.+-.+....+. .+.+.....+.|++ ...|+...+
T Consensus 266 -----~~a--~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~Vks 325 (341)
T COG2520 266 -----KSA--HEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKS 325 (341)
T ss_pred -----Ccc--hhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecc
Confidence 221 3478888999999998766544433331 24456666676652 334544433
No 221
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.18 E-value=0.18 Score=51.71 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=46.4
Q ss_pred CCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC-CC------CeeeecccCCCCCCCccchhe
Q 046488 320 DIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG-LV------PLYITINQRVPFFDNTLDLIH 392 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg-li------p~~~~~ae~LPFpd~SFDlV~ 392 (480)
++++++ .||+||-|||.++..|.+.|..|+++.+|. .+...+.++. +. .+.+++ .+-.+.-.||.++
T Consensus 55 ~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dp--rmvael~krv~gtp~~~kLqV~~gD--~lK~d~P~fd~cV 128 (315)
T KOG0820|consen 55 DLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEIDP--RMVAELEKRVQGTPKSGKLQVLHGD--FLKTDLPRFDGCV 128 (315)
T ss_pred CCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecCc--HHHHHHHHHhcCCCccceeeEEecc--cccCCCcccceee
Confidence 366665 899999999999999999999999988773 3433444432 22 233343 3333344588888
Q ss_pred ec
Q 046488 393 TT 394 (480)
Q Consensus 393 ss 394 (480)
++
T Consensus 129 sN 130 (315)
T KOG0820|consen 129 SN 130 (315)
T ss_pred cc
Confidence 73
No 222
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.13 E-value=0.7 Score=48.11 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=76.7
Q ss_pred eEEEECCCCcHHHHHHhh----C--CCEEEEEecCCChhHHHHHHHh---CCCC-e----eeec----ccCCCC--CCCc
Q 046488 328 IGLDFSIGTGTFAARMRE----F--NVTLVSAIINLGAPFNEMIALR---GLVP-L----YITI----NQRVPF--FDNT 387 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae----~--gV~Vv~vd~d~~~~~~~~iA~r---glip-~----~~~~----ae~LPF--pd~S 387 (480)
.++|+|||.|.=+..|.+ . .+..+.+|++ ..+++..+.+ ...| + +.++ ...+|- ....
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS--~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSVDYYALDVS--RSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC--HHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 799999999985444332 2 4566666654 3444332221 2223 1 2222 122322 2334
Q ss_pred cchhee-cccccCccChhcHHHHHHHHHh-cccCCcEEEEee-ccCChhh----------------HHHHHHHHHHcC--
Q 046488 388 LDLIHT-TRFLDGWIDFVLLDFILYDWDR-VLRPGGLLWIDS-FFCAKED----------------MNDYLEVFKMLK-- 446 (480)
Q Consensus 388 FDlV~s-s~vL~h~~d~~~l~~~L~EI~R-VLKPGG~fiI~~-f~~~~ed----------------L~~~~~~l~~lG-- 446 (480)
..+++. ...+.++.+.+. ..+|.++.+ .|+|||.|+|.- .....+. ++-+..+-+.+|
T Consensus 157 ~r~~~flGSsiGNf~~~ea-~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~~ 235 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEA-AAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEILGSE 235 (319)
T ss_pred ccEEEEeCccccCCCHHHH-HHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHHHhCcc
Confidence 566665 457777766554 669999999 999999998852 1111111 111223333334
Q ss_pred -ceeeEEEEeeccCC--CCcceeEEEE
Q 046488 447 -YKKHKWVVVPKRDK--DDREVFFSAV 470 (480)
Q Consensus 447 -fkkl~W~~~~k~d~--~~~E~~lsav 470 (480)
|..-.|......+. .+-|+++.+.
T Consensus 236 ~Fd~~~f~h~a~~n~~~~rie~~l~s~ 262 (319)
T TIGR03439 236 AFREEDWEFLGEWDEELGRHEAFYIPK 262 (319)
T ss_pred ccCHHHcEEEEEEcCCCCeEEEEEEeC
Confidence 55556776655543 4567777653
No 223
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.99 E-value=0.56 Score=47.15 Aligned_cols=143 Identities=16% Similarity=0.094 Sum_probs=80.8
Q ss_pred ccccccccccCCCCCCchhhhhHH--HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCC-EEEEEecC--CChhHHHHHHH
Q 046488 293 EMPRWIKNVDIDPITNLTADFLIP--EVLDIKPGEIRIGLDFSIGTGTFAARMREFNV-TLVSAIIN--LGAPFNEMIAL 367 (480)
Q Consensus 293 ~~q~W~~~~gf~~~~~~~ad~~I~--~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d--~~~~~~~~iA~ 367 (480)
+.+.|+.+. +-.+.. +..++... .+++||+|.-||+|+..+.++|+ .|+++|.. ..+... ..
T Consensus 55 ~~~~yVSRG---------~~KL~~ale~F~l~~k-~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R~ 121 (245)
T COG1189 55 EEQPYVSRG---------GLKLEKALEEFELDVK-GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---RN 121 (245)
T ss_pred cCcCccccH---------HHHHHHHHHhcCcCCC-CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---hc
Confidence 677887653 222221 23344433 36899999999999999999965 45565543 222221 11
Q ss_pred hCCCCeeeec-ccCC---CCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe---eccCChh-------
Q 046488 368 RGLVPLYITI-NQRV---PFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID---SFFCAKE------- 433 (480)
Q Consensus 368 rglip~~~~~-ae~L---PFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~---~f~~~~e------- 433 (480)
.-.+-.+... +..+ -|.. ..|+++|.-.|... ..+|..+..+|+|+|-++.. .|...++
T Consensus 122 d~rV~~~E~tN~r~l~~~~~~~-~~d~~v~DvSFISL------~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGv 194 (245)
T COG1189 122 DPRVIVLERTNVRYLTPEDFTE-KPDLIVIDVSFISL------KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGV 194 (245)
T ss_pred CCcEEEEecCChhhCCHHHccc-CCCeEEEEeehhhH------HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCce
Confidence 1111111111 1111 1222 57888886665432 45899999999999998765 1211111
Q ss_pred ---------hHHHHHHHHHHcCceeeEEEEe
Q 046488 434 ---------DMNDYLEVFKMLKYKKHKWVVV 455 (480)
Q Consensus 434 ---------dL~~~~~~l~~lGfkkl~W~~~ 455 (480)
-+..+...+...||+...-...
T Consensus 195 v~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 195 VRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred ecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 1234567777778876654443
No 224
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=0.031 Score=53.32 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=70.1
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh-hHH---HHHHHhCC----CCe-eee---cccCCCCCCCccchheec
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGA-PFN---EMIALRGL----VPL-YIT---INQRVPFFDNTLDLIHTT 394 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~-~~~---~~iA~rgl----ip~-~~~---~ae~LPFpd~SFDlV~ss 394 (480)
+.||++|.|.-.++..|....+...++-+.++. .+. +++.-... -.. .+. +..+..-..++||+|.|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 679999999877776665432222222222221 221 22222211 111 111 133444567799999999
Q ss_pred ccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee
Q 046488 395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK 449 (480)
Q Consensus 395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk 449 (480)
.|+-.-..+ +.++.-|.+.|||.|..++..-. ....++.+.+.....||..
T Consensus 111 DClFfdE~h---~sLvdtIk~lL~p~g~Al~fsPR-Rg~sL~kF~de~~~~gf~v 161 (201)
T KOG3201|consen 111 DCLFFDEHH---ESLVDTIKSLLRPSGRALLFSPR-RGQSLQKFLDEVGTVGFTV 161 (201)
T ss_pred cchhHHHHH---HHHHHHHHHHhCcccceeEecCc-ccchHHHHHHHHHhceeEE
Confidence 998532222 56899999999999997764322 1235778888888888763
No 225
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.61 E-value=0.13 Score=54.53 Aligned_cols=92 Identities=13% Similarity=0.058 Sum_probs=57.1
Q ss_pred eEEEECCCCcHHHHHHhhC--CC-EEEEEecCCChh--HHHHHHHhCC--CCeeeecccC-CCCCCCccchheecccccC
Q 046488 328 IGLDFSIGTGTFAARMREF--NV-TLVSAIINLGAP--FNEMIALRGL--VPLYITINQR-VPFFDNTLDLIHTTRFLDG 399 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~--gV-~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae~-LPFpd~SFDlV~ss~vL~h 399 (480)
+|||+-||+|..+.+++.+ |+ .|+..+.+..+- ....+...+. +.++..++.. +....+.||+|... .
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD----P 122 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID----P 122 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC----C
Confidence 7999999999999999886 54 566666553211 1112222222 2233333222 22224679999853 2
Q ss_pred ccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 400 WIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
...+ ..++..+.+.+++||++.++
T Consensus 123 fGs~---~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 FGTP---APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCCc---HHHHHHHHHhcccCCEEEEE
Confidence 2232 24899999999999999997
No 226
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=93.40 E-value=0.1 Score=53.67 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecC
Q 046488 320 DIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIIN 356 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d 356 (480)
.+.++. ++||.+||.|+.+..+++. +..++++|.|
T Consensus 16 ~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D 53 (296)
T PRK00050 16 AIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRD 53 (296)
T ss_pred CCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCC
Confidence 344553 8999999999999999986 2678888866
No 227
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.04 E-value=0.03 Score=47.44 Aligned_cols=92 Identities=22% Similarity=0.157 Sum_probs=33.7
Q ss_pred EEECCCCcHHHHHHhhC----C-CEEEEEecCCCh-hHHHHHHHhC---CCCeeeec----ccCCCCCCCccchheeccc
Q 046488 330 LDFSIGTGTFAARMREF----N-VTLVSAIINLGA-PFNEMIALRG---LVPLYITI----NQRVPFFDNTLDLIHTTRF 396 (480)
Q Consensus 330 LDVGCGtG~fAa~Lae~----g-V~Vv~vd~d~~~-~~~~~iA~rg---lip~~~~~----ae~LPFpd~SFDlV~ss~v 396 (480)
|++|+..|..+..+++. + ..++++++.... ..+..+...+ .+.++.+. ...++ ++.||+++.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~--~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP--DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH--H--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC--CCCEEEEEECCC
Confidence 68999999888777653 2 256777765421 1222222222 23333333 22233 689999996442
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|- .......+..+.+.|+|||.+++.+
T Consensus 79 --H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 --HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 21 1222457888999999999988864
No 228
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=92.80 E-value=0.43 Score=52.25 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=17.4
Q ss_pred CCeEEEECCCCcHHHHHHhhC
Q 046488 326 IRIGLDFSIGTGTFAARMREF 346 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~ 346 (480)
..+|||.|||+|.|...++++
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~ 52 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKK 52 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHH
Confidence 347999999999998877653
No 229
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.80 E-value=1.3 Score=46.48 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=24.9
Q ss_pred eEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488 328 IGLDFSIGTGTFAARMREFNVTLVSAIIN 356 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d 356 (480)
.|||+=||+|+|+..|++..-.|++++.+
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~ 227 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIV 227 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCC
Confidence 69999999999999999988889988865
No 230
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.77 E-value=0.094 Score=51.14 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=45.3
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHh-hCCCE-EEEEecCCCh-hHHH---HHHHh-----CCCCeeeecccCCCCCC
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMR-EFNVT-LVSAIINLGA-PFNE---MIALR-----GLVPLYITINQRVPFFD 385 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~La-e~gV~-Vv~vd~d~~~-~~~~---~iA~r-----glip~~~~~ae~LPFpd 385 (480)
+.+++.+++ +.+|+|||.|......+ ..++. ++|+.+.... .... +...+ |.-..-+. ...-.|-+
T Consensus 36 ~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~-l~~gdfl~ 112 (205)
T PF08123_consen 36 DELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE-LIHGDFLD 112 (205)
T ss_dssp HHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE-EECS-TTT
T ss_pred HHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce-eeccCccc
Confidence 345565554 89999999999755444 33665 7888865211 1111 00011 11010000 11222222
Q ss_pred --------CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 386 --------NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 386 --------~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
..-|+|+++... + +++ +...|.++..-||||-+++-.
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~--F-~~~-l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTC--F-DPD-LNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TT--T--HH-HHHHHHHHHTTS-TT-EEEES
T ss_pred cHhHhhhhcCCCEEEEeccc--c-CHH-HHHHHHHHHhcCCCCCEEEEC
Confidence 234777775432 1 222 345678888999999886654
No 231
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=92.43 E-value=0.31 Score=48.59 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=47.7
Q ss_pred HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHH----hCCCCeeeecccCCCCCC---Cccc
Q 046488 317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL----RGLVPLYITINQRVPFFD---NTLD 389 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~----rglip~~~~~ae~LPFpd---~SFD 389 (480)
+.+++.++ ..|||+|.|+|.++..|.+++..++.++.|. .+...+.. .+.+.++.+++..+.+++ +.-.
T Consensus 24 ~~~~~~~~--~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~--~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~ 99 (262)
T PF00398_consen 24 DALDLSEG--DTVLEIGPGPGALTRELLKRGKRVIAVEIDP--DLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPL 99 (262)
T ss_dssp HHHTCGTT--SEEEEESSTTSCCHHHHHHHSSEEEEEESSH--HHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEE
T ss_pred HhcCCCCC--CEEEEeCCCCccchhhHhcccCcceeecCcH--hHHHHHHHHhhhcccceeeecchhccccHHhhcCCce
Confidence 34455433 4899999999999999999887788887662 33333333 233555667766666655 4455
Q ss_pred hheec
Q 046488 390 LIHTT 394 (480)
Q Consensus 390 lV~ss 394 (480)
.|+++
T Consensus 100 ~vv~N 104 (262)
T PF00398_consen 100 LVVGN 104 (262)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 232
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=92.41 E-value=0.22 Score=52.11 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=25.1
Q ss_pred eEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488 328 IGLDFSIGTGTFAARMREFNVTLVSAIIN 356 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d 356 (480)
+|||++||+|.++..|++....+++++.+
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~ 228 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIA 228 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECC
Confidence 59999999999999999876678888765
No 233
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=92.38 E-value=0.17 Score=47.93 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=24.5
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIIN 356 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d 356 (480)
++|+|+.||.|+.+..+|...-.|++++.+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid 30 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDID 30 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECC
Confidence 379999999999999999988788888876
No 234
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.26 E-value=0.19 Score=53.25 Aligned_cols=101 Identities=19% Similarity=0.088 Sum_probs=56.5
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHH---HhCCCCeeeec------ccCCCCC-CCccchheeccc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIA---LRGLVPLYITI------NQRVPFF-DNTLDLIHTTRF 396 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA---~rglip~~~~~------ae~LPFp-d~SFDlV~ss~v 396 (480)
..+||+|.|.|.-+.++-+--.+.-++.+-...++...+. .+...+....+ ..++|++ ...|++|+...-
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e 194 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE 194 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence 4699999999986555443211111111111113333221 11111111111 4467765 467888887776
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|.+......+...+..+..++.|||.++|..
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 6665544334558888999999999999863
No 235
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.08 E-value=3.4 Score=41.03 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=71.3
Q ss_pred cCCCCCCCCeEEEECCCCcHHHHHHhhC---C-CEEEEEecCCChhHHHHHHHhCC-CCeeeecc---cCCCCCCCccch
Q 046488 319 LDIKPGEIRIGLDFSIGTGTFAARMREF---N-VTLVSAIINLGAPFNEMIALRGL-VPLYITIN---QRVPFFDNTLDL 390 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~---g-V~Vv~vd~d~~~~~~~~iA~rgl-ip~~~~~a---e~LPFpd~SFDl 390 (480)
+++++|+ .||=+|+-+|+...+.++- | +..+-+++....+.+....+|.. +|.. .++ +..-+-=+..|+
T Consensus 72 ~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL-~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPIL-EDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeee-cccCCcHHhhhhcccccE
Confidence 4566665 8999999999999998874 3 22233333322222223333433 4443 332 112222345777
Q ss_pred heecccccCccChhcHHHHHHHHHhcccCCcEEEEee------ccCChhh-HHHHHHHHHHcCceeeE
Q 046488 391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS------FFCAKED-MNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~------f~~~~ed-L~~~~~~l~~lGfkkl~ 451 (480)
|+.. +..+.+.+-+...+..-||+||++++.- -....++ .++..+.++.-+|+.+.
T Consensus 149 iy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 149 IYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred EEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 7752 3345555778889999999999877751 2222222 24445566666776554
No 236
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=92.06 E-value=0.38 Score=43.51 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=27.9
Q ss_pred CCCeEEEECCCCcHHHHHHhh------CCCEEEEEecCC
Q 046488 325 EIRIGLDFSIGTGTFAARMRE------FNVTLVSAIINL 357 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae------~gV~Vv~vd~d~ 357 (480)
....|+|+|||-|.++..|+. .+..+++++.+.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 456899999999999999988 378889988764
No 237
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=91.82 E-value=2.7 Score=41.08 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=67.8
Q ss_pred EEEECCCCcHHHHHHhhCCC--EEEEEecCCC--hhHHHHHHHhCCC---Ceeeec-ccCCCCCCC-ccchheecccccC
Q 046488 329 GLDFSIGTGTFAARMREFNV--TLVSAIINLG--APFNEMIALRGLV---PLYITI-NQRVPFFDN-TLDLIHTTRFLDG 399 (480)
Q Consensus 329 VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~--~~~~~~iA~rgli---p~~~~~-ae~LPFpd~-SFDlV~ss~vL~h 399 (480)
|.||||--|.++.+|.+.|. .++++|++.+ ..+...++..++. ...+++ .+.+ ..+ ..|.|+.+.+=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l--~~~e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL--KPGEDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc--CCCCCCCEEEEecCCH-
Confidence 68999999999999999986 4566665432 1233445555543 344555 3434 343 368888655421
Q ss_pred ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEee
Q 046488 400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVP 456 (480)
Q Consensus 400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~ 456 (480)
..+..+|.+....++..-.|++. +..+...+...+...||.-+.=....
T Consensus 78 ----~lI~~ILe~~~~~~~~~~~lILq----P~~~~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 78 ----ELIIEILEAGPEKLSSAKRLILQ----PNTHAYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp ----HHHHHHHHHTGGGGTT--EEEEE----ESS-HHHHHHHHHHTTEEEEEEEEEE
T ss_pred ----HHHHHHHHhhHHHhccCCeEEEe----CCCChHHHHHHHHHCCCEEEEeEEEe
Confidence 12345778888888877788774 33444567778889999877655543
No 238
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.42 E-value=0.53 Score=47.94 Aligned_cols=104 Identities=19% Similarity=0.031 Sum_probs=49.7
Q ss_pred CCCeEEEECCCCcH--HHHHHhhC---CCEEEEEecCCChhHHH---HHHHhCC----CCeeeeccc------CCCCCCC
Q 046488 325 EIRIGLDFSIGTGT--FAARMREF---NVTLVSAIINLGAPFNE---MIALRGL----VPLYITINQ------RVPFFDN 386 (480)
Q Consensus 325 ~iR~VLDVGCGtG~--fAa~Lae~---gV~Vv~vd~d~~~~~~~---~iA~rgl----ip~~~~~ae------~LPFpd~ 386 (480)
.++..||+|||--+ ..-..++. ...|+-++.| +... +.-..+. ..++.++.. .-|--.+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~D---Pvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDND---PVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESS---HHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCC---chHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 58999999999543 34444432 5677777755 2211 1111221 122333211 1111122
Q ss_pred ccc-----hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488 387 TLD-----LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA 431 (480)
Q Consensus 387 SFD-----lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~ 431 (480)
.+| .|....+|+++.+.+....++..+...|-||.+++|++....
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 333 344567788887755567899999999999999999976543
No 239
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=90.99 E-value=0.18 Score=48.03 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=34.8
Q ss_pred CCCCccchheecccccCcc--------ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 383 FFDNTLDLIHTTRFLDGWI--------DFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 383 Fpd~SFDlV~ss~vL~h~~--------d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
-..++||.+.|.+++.|.. ++..-...+.++.|+|||||.+++.
T Consensus 59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 4578899999999888763 2222246899999999999999987
No 240
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=90.97 E-value=0.34 Score=42.78 Aligned_cols=30 Identities=7% Similarity=0.011 Sum_probs=24.9
Q ss_pred eEEEECCCCcHHHHHHhhCCC--EEEEEecCC
Q 046488 328 IGLDFSIGTGTFAARMREFNV--TLVSAIINL 357 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~ 357 (480)
++||+|||+|.++..++..+. .+++++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence 489999999999999988744 588888763
No 241
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.64 E-value=2.1 Score=42.41 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=53.7
Q ss_pred CCCCCCCCeEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccC------CCCCCCccchh
Q 046488 320 DIKPGEIRIGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQR------VPFFDNTLDLI 391 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~------LPFpd~SFDlV 391 (480)
.+.+++ +||..|+| .|..+..+++ .|+.++.++.+ ......+...+ +.......+. .....+.+|+|
T Consensus 162 ~~~~~~--~vli~g~g~vG~~~~~la~~~G~~V~~~~~s--~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 162 EVKPGE--TVLVIGLGGLGLNAVQIAKAMGAAVIAVDIK--EEKLELAKELG-ADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCC--EEEEECCcHHHHHHHHHHHHcCCEEEEEcCC--HHHHHHHHHhC-CCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 345553 67778876 4777777776 48887766543 22223332223 3322221110 02245678877
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+.... . ...+.++.|.|++||.++...
T Consensus 237 id~~g-----~----~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 FDFVG-----T----QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EECCC-----C----HHHHHHHHHHhhcCCEEEEEC
Confidence 74221 1 237889999999999988754
No 242
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=90.60 E-value=0.65 Score=52.98 Aligned_cols=100 Identities=12% Similarity=-0.025 Sum_probs=55.2
Q ss_pred CeEEEECCCCcHHHHHHhhC--------------------------------------------CCEEEEEecCCCh--h
Q 046488 327 RIGLDFSIGTGTFAARMREF--------------------------------------------NVTLVSAIINLGA--P 360 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~--------------------------------------------gV~Vv~vd~d~~~--~ 360 (480)
..++|-.||+|++....+.. ...+++++.+..+ .
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 58999999999997655431 1246777766321 1
Q ss_pred HHHHHHHhCC---CCeeeecccCCCCC--CCccchheeccccc-CccChhcHHHHHHHHHhcc---cCCcEEEEe
Q 046488 361 FNEMIALRGL---VPLYITINQRVPFF--DNTLDLIHTTRFLD-GWIDFVLLDFILYDWDRVL---RPGGLLWID 426 (480)
Q Consensus 361 ~~~~iA~rgl---ip~~~~~ae~LPFp--d~SFDlV~ss~vL~-h~~d~~~l~~~L~EI~RVL---KPGG~fiI~ 426 (480)
+...+...|. +.+..+++..++.+ .++||+|+++==.. .+.+...+..+..++.+.| .||+.+++.
T Consensus 272 A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 272 ARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 1222333343 33445566666554 46899999862111 1222222234444444444 499988774
No 243
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=90.59 E-value=0.95 Score=48.39 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=16.5
Q ss_pred CCCCCCccchheecccccCcc
Q 046488 381 VPFFDNTLDLIHTTRFLDGWI 401 (480)
Q Consensus 381 LPFpd~SFDlV~ss~vL~h~~ 401 (480)
=-||++|.+++|++.++| |.
T Consensus 156 RLfP~~Slh~~~Ss~slH-WL 175 (386)
T PLN02668 156 RLFPARSIDVFHSAFSLH-WL 175 (386)
T ss_pred cccCCCceEEEEeeccce-ec
Confidence 348899999999999984 53
No 244
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=90.46 E-value=0.47 Score=48.66 Aligned_cols=98 Identities=21% Similarity=0.073 Sum_probs=56.8
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCCC----Ceeeec-ccCCC--CCCCccchheec
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGLV----PLYITI-NQRVP--FFDNTLDLIHTT 394 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgli----p~~~~~-ae~LP--Fpd~SFDlV~ss 394 (480)
++|||+=|=||+|+.+.+..|+ .|+++|.+ ..+.+ .++..+.- .++..+ .+-+. -..+.||+|++.
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S--~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSVDSS--KRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEEES---HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4899999999999999888776 57888764 23332 34444431 122222 11111 024689999972
Q ss_pred ---ccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 395 ---RFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 395 ---~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+.=..+.-......++..+.++|+|||.+++.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22111111112356788899999999998765
No 245
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.43 E-value=1 Score=48.72 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=69.1
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCCCCe--eeecccCCCCC---CCccchheecccccC
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGLVPL--YITINQRVPFF---DNTLDLIHTTRFLDG 399 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rglip~--~~~~ae~LPFp---d~SFDlV~ss~vL~h 399 (480)
.+|||+=||.|+|+..|+++...|+++.++..+. +...++..+.-+. ..+.++++.-. ...||.|+.. +
T Consensus 295 ~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD----P 370 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD----P 370 (432)
T ss_pred CEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC----C
Confidence 4899999999999999998888888888763222 2223333333332 33445554433 3578988842 1
Q ss_pred ccChhcHH-HHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 400 WIDFVLLD-FILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 400 ~~d~~~l~-~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
++.-+. .++.++.+ ++|-..++|+ |....+.+-...+...||+
T Consensus 371 --PR~G~~~~~lk~l~~-~~p~~IvYVS---CNP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 371 --PRAGADREVLKQLAK-LKPKRIVYVS---CNPATLARDLAILASTGYE 414 (432)
T ss_pred --CCCCCCHHHHHHHHh-cCCCcEEEEe---CCHHHHHHHHHHHHhCCeE
Confidence 111112 35555554 5677777774 6777776555666776775
No 246
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=90.41 E-value=0.35 Score=47.48 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=53.8
Q ss_pred CCeEEEECCCCcHHHHHHhhCCCE-EEEEecCCChhHHHHH----HHhCCCCeeeecccCCCCCCCccchheecccccCc
Q 046488 326 IRIGLDFSIGTGTFAARMREFNVT-LVSAIINLGAPFNEMI----ALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~~~~~i----A~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.++|||+|.|+|..+...+..|.. ++..+.+ +...+. ++..++....... .+-..+..||+|+.+.++...
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~---P~~~~ai~lNa~angv~i~~~~~-d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADID---PWLEQAIRLNAAANGVSILFTHA-DLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred cceeeecccccChHHHHHHHhhhHHHHhcCCC---hHHHHHhhcchhhccceeEEeec-cccCCCcceeEEEeeceecCc
Confidence 368999999999988877776542 3444433 333221 1122222222112 233388999999999887654
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEE
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI 425 (480)
... ..++. ..+.|+-.|..++
T Consensus 156 ~~a---~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 156 TEA---DRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred hHH---HHHHH-HHHHHHhCCCEEE
Confidence 433 34666 6666666555444
No 247
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.40 E-value=0.4 Score=47.88 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=57.9
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEE-EEEecCCChhHHHHHHHhC------CCCeeeecccCCC-CCCCccchheeccccc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTL-VSAIINLGAPFNEMIALRG------LVPLYITINQRVP-FFDNTLDLIHTTRFLD 398 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~V-v~vd~d~~~~~~~~iA~rg------lip~~~~~ae~LP-Fpd~SFDlV~ss~vL~ 398 (480)
++||.||-|-|.....+.++...- ..+... ..-..+...-| .++..-.|-..+| .+|++||-|.-...-.
T Consensus 103 grvLnVGFGMgIidT~iQe~~p~~H~IiE~h--p~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e 180 (271)
T KOG1709|consen 103 GRVLNVGFGMGIIDTFIQEAPPDEHWIIEAH--PDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSE 180 (271)
T ss_pred ceEEEeccchHHHHHHHhhcCCcceEEEecC--HHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechhh
Confidence 489999999999998888874321 112211 12222222222 1222222322222 4599999998643223
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA 431 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~ 431 (480)
+.. ++..+.+-+.|.|||||.|-+.+..+-
T Consensus 181 ~yE---dl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 181 LYE---DLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred HHH---HHHHHHHHHhhhcCCCceEEEecCccc
Confidence 322 235688899999999999877544433
No 248
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=90.35 E-value=0.24 Score=47.31 Aligned_cols=96 Identities=16% Similarity=0.119 Sum_probs=52.8
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCCC---Ceeeec----ccCCCCCCCccchheec
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGLV---PLYITI----NQRVPFFDNTLDLIHTT 394 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgli---p~~~~~----ae~LPFpd~SFDlV~ss 394 (480)
.+|||+=||||.++....++|+ .|+-++.+. .+.. .+..-+.. ..+..+ ..++.-....||+|++.
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~--~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAKSVVFVEKNR--KAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CeEEEcCCccCccHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 4899999999999999999986 455555442 2221 22222222 122222 22232357899999964
Q ss_pred ccccCccChhcHHHHHHHHH--hcccCCcEEEEee
Q 046488 395 RFLDGWIDFVLLDFILYDWD--RVLRPGGLLWIDS 427 (480)
Q Consensus 395 ~vL~h~~d~~~l~~~L~EI~--RVLKPGG~fiI~~ 427 (480)
= ++.....+..++..+. ..|+++|.+++-+
T Consensus 122 P---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 122 P---PYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp ----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred C---CcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 1 1111110144666665 8999999988854
No 249
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=88.75 E-value=1.1 Score=44.55 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=19.5
Q ss_pred eEEEECCCCcHHHHHHhhCCCEE
Q 046488 328 IGLDFSIGTGTFAARMREFNVTL 350 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~V 350 (480)
...|||||.|.+...|+....+.
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdt 85 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDT 85 (249)
T ss_pred eEEeeccCccchhhhccccCccc
Confidence 48999999999999999885443
No 250
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=88.66 E-value=0.71 Score=45.37 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=58.8
Q ss_pred eEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC-----C--CeeeecccCCCCCCCccchheecccccCc
Q 046488 328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL-----V--PLYITINQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl-----i--p~~~~~ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
.+-|+|+|+|.++...++..-.|+++..+ |.....|.+++ . .++.+++....| ...|+|+|-..=.-+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~d---Pk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKD---PKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecC---cHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 69999999999887777665567777765 45555565552 2 234455555555 678999984321122
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEE
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI 425 (480)
.+... ..++..+...||-.|.++=
T Consensus 110 i~E~q-VpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 IEEKQ-VPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hcccc-cHHHHHHHHHhhcCCcccc
Confidence 22222 3477777778888888653
No 251
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.20 E-value=0.64 Score=43.99 Aligned_cols=69 Identities=16% Similarity=0.046 Sum_probs=41.7
Q ss_pred CCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCC------CCeeeecccCCCCCCCccchheeccc
Q 046488 325 EIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGL------VPLYITINQRVPFFDNTLDLIHTTRF 396 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rgl------ip~~~~~ae~LPFpd~SFDlV~ss~v 396 (480)
+...++|+|||.|-+....+-. +-.++|++++. ++++ ++.++. +.+.......+-+..+.||.++.+--
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALE-If~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALE-IFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCH--HHHH-HHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 3458999999999987555443 45678888773 3333 333322 23333444445455688888876543
No 252
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.89 E-value=0.17 Score=45.13 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=28.6
Q ss_pred ccchheecccccCcc----ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 387 TLDLIHTTRFLDGWI----DFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 387 SFDlV~ss~vL~h~~----d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
.||+|.|..+. -|. .++.+..++..+++.|||||.|++-
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 38999986543 222 2334678999999999999999986
No 253
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.53 E-value=2.5 Score=43.98 Aligned_cols=102 Identities=19% Similarity=0.124 Sum_probs=55.8
Q ss_pred hcCCCCCCCCeEEEECCCC-cHHHHHHhhC-CCE-EEEEecCCChhHHHHHHHhC-CCCeeee-----cccCC-CC-CCC
Q 046488 318 VLDIKPGEIRIGLDFSIGT-GTFAARMREF-NVT-LVSAIINLGAPFNEMIALRG-LVPLYIT-----INQRV-PF-FDN 386 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV~-Vv~vd~d~~~~~~~~iA~rg-lip~~~~-----~ae~L-PF-pd~ 386 (480)
+..+.+++ +||.+|||. |..+..+++. |+. ++.++.+ +.....+++. ....+.. ..+.+ .+ ..+
T Consensus 179 ~~~~~~g~--~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~---~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 179 LAEVKPGD--TVAVWGCGPVGLFAARSAKLLGAERVIAIDRV---PERLEMARSHLGAETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hccCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC---HHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCC
Confidence 33455553 799999987 8788777764 763 6666543 2223333332 2221110 11111 11 233
Q ss_pred ccchheeccc---------------ccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 387 TLDLIHTTRF---------------LDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 387 SFDlV~ss~v---------------L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
.+|+|+-.-. +....+. ...+.++.|.|+|||.+++..
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDR---PDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCc---hHHHHHHHHHhccCCEEEEEc
Confidence 6888775321 0111122 347899999999999998764
No 254
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=87.15 E-value=4.6 Score=40.85 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=56.2
Q ss_pred CCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHH------HHh--C-CCCe-eeecccCCC--CCCCc-cchh
Q 046488 326 IRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMI------ALR--G-LVPL-YITINQRVP--FFDNT-LDLI 391 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~i------A~r--g-lip~-~~~~ae~LP--Fpd~S-FDlV 391 (480)
..+||++|.|||-.++.++.. +..++-.+.-.....+... +.. | -+.+ .+.|..++. +.... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 457999999999766666653 5555554432211222211 111 1 1111 123322222 22222 9999
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA 431 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~ 431 (480)
+++.++.+-...+ -+..=+.-.|--+|.+++....+.
T Consensus 167 lasDvvy~~~~~e---~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 167 LASDVVYEEESFE---GLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEeeeeecCCcch---hHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999987655554 356666667777886555444333
No 255
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=86.07 E-value=3.3 Score=40.18 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=54.0
Q ss_pred CeEEEECCCCcHHHHHHhhCCCE-EEEEecCCChhHHHH----HHHhC---CCCeeeeccc-CCCCCCC--ccchheecc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVT-LVSAIINLGAPFNEM----IALRG---LVPLYITINQ-RVPFFDN--TLDLIHTTR 395 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~~~~~----iA~rg---lip~~~~~ae-~LPFpd~--SFDlV~ss~ 395 (480)
.++||+=+|+|.++....++|.. ++-++.+. .+... +..-+ ....+..++. .|+-... .||+|+..=
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~--~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGAARVVFVEKDR--KAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 48999999999999999999765 44444432 22222 11112 2233333332 2222333 499999642
Q ss_pred ccc-CccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 396 FLD-GWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 396 vL~-h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
=+. ...+.. +.....+-...|+|+|.+++-
T Consensus 123 Py~~~l~~~~-~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 123 PYAKGLLDKE-LALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred CCccchhhHH-HHHHHHHhcCCcCCCcEEEEE
Confidence 221 111111 122333466889999998884
No 256
>PRK11524 putative methyltransferase; Provisional
Probab=85.59 E-value=2 Score=43.42 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=17.9
Q ss_pred HHHHHHHHhcccCCcEEEEe
Q 046488 407 DFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 407 ~~~L~EI~RVLKPGG~fiI~ 426 (480)
...+.|+.|+|||||.+++.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 46899999999999999884
No 257
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.76 E-value=0.13 Score=51.60 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=57.1
Q ss_pred CCeEEEECCCCcHHHHHHhhC--------CC---EEEEEecCCChhHHHHHHHhCCCCeeeec-----ccC-CC-CCCCc
Q 046488 326 IRIGLDFSIGTGTFAARMREF--------NV---TLVSAIINLGAPFNEMIALRGLVPLYITI-----NQR-VP-FFDNT 387 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~--------gV---~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~-LP-Fpd~S 387 (480)
.++|+|+.+-.|+|+..|.++ +. .++++++...+|. +|.+.+.-+. ++. +- |....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI------~GV~qlq~DIT~~stae~Ii~hfggek 115 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI------EGVIQLQGDITSASTAEAIIEHFGGEK 115 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc------CceEEeecccCCHhHHHHHHHHhCCCC
Confidence 678999999999999998764 11 1566665322221 2221111111 111 11 34457
Q ss_pred cchheeccc-----ccCcc---ChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 388 LDLIHTTRF-----LDGWI---DFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 388 FDlV~ss~v-----L~h~~---d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
-|+|+|..+ +|.+. ..+.+..+|.-.-+||||||.|+---|.
T Consensus 116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 888888543 33322 2334456777888999999998754343
No 258
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=84.66 E-value=2.7 Score=42.74 Aligned_cols=114 Identities=22% Similarity=0.288 Sum_probs=64.1
Q ss_pred hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCCCCeee--ecccCC-C-
Q 046488 312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGLVPLYI--TINQRV-P- 382 (480)
Q Consensus 312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rglip~~~--~~ae~L-P- 382 (480)
..+...+|...++. .|||+.+|.|+=+.++++. .-.+++.+.+... .....+.+-|...... .++..+ +
T Consensus 74 S~l~~~~L~~~~~~--~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 74 SQLVALALDPQPGE--RVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPK 151 (283)
T ss_dssp HHHHHHHHTTTTTS--EEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH
T ss_pred cccccccccccccc--cccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccc
Confidence 33444566666665 7999999999988888775 2466777655211 1111222223333222 232222 2
Q ss_pred CCCCccchhee----cc--cccCccC------h-------hcHHHHHHHHHhcc----cCCcEEEEee
Q 046488 383 FFDNTLDLIHT----TR--FLDGWID------F-------VLLDFILYDWDRVL----RPGGLLWIDS 427 (480)
Q Consensus 383 Fpd~SFDlV~s----s~--vL~h~~d------~-------~~l~~~L~EI~RVL----KPGG~fiI~~ 427 (480)
.....||.|.. +. ++..-++ + ..-..+|....+.| ||||+++.+.
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 23346999985 22 2222111 0 01135889999999 9999998874
No 259
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.34 E-value=12 Score=35.26 Aligned_cols=117 Identities=12% Similarity=-0.019 Sum_probs=69.1
Q ss_pred ECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH-------H--HHHhCCCCeeeec-cc----CCCCCCCccchheec
Q 046488 332 FSIGTGTFAARMREF---NVTLVSAIINLGAPFNE-------M--IALRGLVPLYITI-NQ----RVPFFDNTLDLIHTT 394 (480)
Q Consensus 332 VGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~-------~--iA~rglip~~~~~-ae----~LPFpd~SFDlV~ss 394 (480)
||=|.=+|+..|++. +..+++++.+....... . .-++.++.+.+++ +. .+....+.||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 556666788888875 45666666654322111 1 1123345555544 33 344567999999965
Q ss_pred ccccCcc------------ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488 395 RFLDGWI------------DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 395 ~vL~h~~------------d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl 450 (480)
+= |.. ....+..+|....++|+++|.+.|+......-+.=.+.++++..|+.-.
T Consensus 83 FP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 83 FP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLV 148 (166)
T ss_pred CC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEE
Confidence 42 332 1234567899999999999999997544333211123467777777543
No 260
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=84.21 E-value=2.5 Score=44.52 Aligned_cols=94 Identities=18% Similarity=0.108 Sum_probs=57.3
Q ss_pred CCCCCCCeEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc--cCCCCCCCccchheeccc
Q 046488 321 IKPGEIRIGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN--QRVPFFDNTLDLIHTTRF 396 (480)
Q Consensus 321 l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a--e~LPFpd~SFDlV~ss~v 396 (480)
+++|+ .|+=+|+| .|..|..+++ .|.+|+.++.+. ...+.|++-+...+.... ....--.+.||+|+..-.
T Consensus 164 ~~pG~--~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~---~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 164 VKPGK--WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE---EKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCCCC--EEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh---HHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 45554 67777776 4567888887 588998888653 223344443333333321 111111223888885332
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
. ..+....+.||+||.+++....
T Consensus 239 ------~----~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ------P----ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ------h----hhHHHHHHHHhcCCEEEEECCC
Confidence 1 2688999999999999987544
No 261
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=83.66 E-value=0.71 Score=41.31 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=26.1
Q ss_pred CCeEEEECCCCcHHHHHHhhCCCEEEEEec
Q 046488 326 IRIGLDFSIGTGTFAARMREFNVTLVSAII 355 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~ 355 (480)
.....|+|||.|.+.--|.+.|....++|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 346899999999999999999998888874
No 262
>PRK10742 putative methyltransferase; Provisional
Probab=83.58 E-value=2.1 Score=43.35 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=36.0
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIIN 356 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d 356 (480)
.+.+.+.+++|..-+|||.=+|+|..+..++.+|..|+.++-+
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~ 119 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERN 119 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECC
Confidence 5667778887755589999999999999999999998777644
No 263
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=83.35 E-value=3.1 Score=35.88 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeecccC-----C--CCCCCccchheecccccCccChhcH
Q 046488 335 GTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQR-----V--PFFDNTLDLIHTTRFLDGWIDFVLL 406 (480)
Q Consensus 335 GtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~-----L--PFpd~SFDlV~ss~vL~h~~d~~~l 406 (480)
|.|.++..+++. |..++.++.+ +...+.+++-+...+....+. + .+..+.+|+|+-.-. .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~---~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~---- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRS---EEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S---- 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESS---HHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S----
T ss_pred ChHHHHHHHHHHcCCEEEEEECC---HHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----c----
Confidence 568888888774 8888888865 334445555444443332111 1 123457888873211 1
Q ss_pred HHHHHHHHhcccCCcEEEEeeccC
Q 046488 407 DFILYDWDRVLRPGGLLWIDSFFC 430 (480)
Q Consensus 407 ~~~L~EI~RVLKPGG~fiI~~f~~ 430 (480)
...+.+...+|||||.+++.....
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 248999999999999999886554
No 264
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=82.46 E-value=7.5 Score=40.62 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=12.7
Q ss_pred cCCCCCCCccchheeccccc
Q 046488 379 QRVPFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 379 e~LPFpd~SFDlV~ss~vL~ 398 (480)
..==||++|.|++|++.+||
T Consensus 99 y~rLfP~~Svh~~~Ss~alH 118 (334)
T PF03492_consen 99 YGRLFPSNSVHFGHSSYALH 118 (334)
T ss_dssp TS--S-TT-EEEEEEES-TT
T ss_pred hhccCCCCceEEEEEechhh
Confidence 33348899999999999885
No 265
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=81.67 E-value=43 Score=33.81 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=71.3
Q ss_pred eEEEECCCCcHHHHHHhhCCCEEE-EEecCCChhHHHHHHHhCCCCeeeecccCCCCC--CCccchheeccccc-----C
Q 046488 328 IGLDFSIGTGTFAARMREFNVTLV-SAIINLGAPFNEMIALRGLVPLYITINQRVPFF--DNTLDLIHTTRFLD-----G 399 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~Vv-~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFp--d~SFDlV~ss~vL~-----h 399 (480)
+|+|+-||.|.+...+.+.|..++ +++.+ ..+.......-.-..+.++.+.+.-. ...+|+++.+.--. .
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~--~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEID--KSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCC--HHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 599999999999998888887754 34433 23333332221111233443333221 35699999753111 1
Q ss_pred ----ccChhcHHHHHHHHHh---cccCCcEEEEe---eccC--ChhhHHHHHHHHHHcCceeeEEEEeeccC----CCCc
Q 046488 400 ----WIDFVLLDFILYDWDR---VLRPGGLLWID---SFFC--AKEDMNDYLEVFKMLKYKKHKWVVVPKRD----KDDR 463 (480)
Q Consensus 400 ----~~d~~~l~~~L~EI~R---VLKPGG~fiI~---~f~~--~~edL~~~~~~l~~lGfkkl~W~~~~k~d----~~~~ 463 (480)
..+.. ..++.++.| .+||- +|++- .+.. ..+.++.+...++.+||. +.|.+..-.+ +.+.
T Consensus 80 ~~~~~~d~r--~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~-~~~~~l~a~~~GvPQ~R~ 155 (275)
T cd00315 80 KRKGFEDTR--GTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYN-VYWKLLNASDYGVPQNRE 155 (275)
T ss_pred hcCCCCCch--HHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcE-EEEEEEEHHHcCCCCCCc
Confidence 11111 234444444 44666 33333 2222 123456788889999997 5555543222 1344
Q ss_pred ceeEEEE
Q 046488 464 EVFFSAV 470 (480)
Q Consensus 464 E~~lsav 470 (480)
-+|+.++
T Consensus 156 R~~~ia~ 162 (275)
T cd00315 156 RVFIIGI 162 (275)
T ss_pred EEEEEEE
Confidence 4555544
No 266
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=80.70 E-value=8.6 Score=41.84 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=55.9
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhCCCCeeee--cccCCC---CCCCccch
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRGLVPLYIT--INQRVP---FFDNTLDL 390 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rglip~~~~--~ae~LP---Fpd~SFDl 390 (480)
+.|.+..+|||+.+-.|+=+.++|.. +-+.+-++.+....... .+.+-|.-+.++. +...+| |+. +||-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 44444448999999999755554442 22333344443322222 2233343333332 233444 555 9999
Q ss_pred he----ecc--cccC-----ccC-h-------hcHHHHHHHHHhcccCCcEEEEee
Q 046488 391 IH----TTR--FLDG-----WID-F-------VLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 391 V~----ss~--vL~h-----~~d-~-------~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|. |+. ++.- |.. . ..-.++|......+||||+++.+.
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 87 444 2211 000 0 001346777788899999998874
No 267
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.19 E-value=14 Score=37.64 Aligned_cols=93 Identities=14% Similarity=0.000 Sum_probs=52.0
Q ss_pred cCCCCCCCCeEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheeccc
Q 046488 319 LDIKPGEIRIGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRF 396 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~v 396 (480)
..+++++ +||=.|+| .|.++..+++ .|+.++.++.+. ...+.+++-+....+... . ...+.+|+++-...
T Consensus 161 ~~~~~g~--~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~---~~~~~a~~~Ga~~vi~~~-~--~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 161 ASLPPGG--RLGLYGFGGSAHLTAQVALAQGATVHVMTRGA---AARRLALALGAASAGGAY-D--TPPEPLDAAILFAP 232 (329)
T ss_pred cCCCCCC--EEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh---HHHHHHHHhCCceecccc-c--cCcccceEEEECCC
Confidence 3455554 78888875 3445555655 488777666442 223444443333222211 1 11235776542211
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
. ...+.+..++|||||++++...
T Consensus 233 -----~----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 -----A----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -----c----HHHHHHHHHhhCCCcEEEEEec
Confidence 1 2368899999999999988654
No 268
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=77.88 E-value=18 Score=37.01 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=58.8
Q ss_pred cCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEE--EEEecCC-ChhHHHHHHHhC--CCCeeeecccCCCCC----CCcc
Q 046488 319 LDIKPGEIRIGLDFSIGTGTFAARMREF-NVTL--VSAIINL-GAPFNEMIALRG--LVPLYITINQRVPFF----DNTL 388 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~V--v~vd~d~-~~~~~~~iA~rg--lip~~~~~ae~LPFp----d~SF 388 (480)
+.+++|. +||=+|+++|+...+..+- |... .++..+. +-..+...|+++ .+|++.+. +.|.. =.-.
T Consensus 152 ihikpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDA--rhP~KYRmlVgmV 227 (317)
T KOG1596|consen 152 IHIKPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDA--RHPAKYRMLVGMV 227 (317)
T ss_pred eeecCCc--eEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccC--CCchheeeeeeeE
Confidence 3477875 8999999999988888764 3332 2333221 112233444443 34554432 23321 2256
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
|+|++ .+..+++...+.....-.||+||.|+|+
T Consensus 228 DvIFa-----Dvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 228 DVIFA-----DVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEec-----cCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 66664 2334444456778889999999999987
No 269
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=77.28 E-value=2.4 Score=46.87 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=31.5
Q ss_pred hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIIN 356 (480)
Q Consensus 314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d 356 (480)
+|.+-+.+..+ ..+||+-||||.++..++++--.|+++.++
T Consensus 374 ~i~e~~~l~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~ 414 (534)
T KOG2187|consen 374 TIGEWAGLPAD--KTLLDVCCGTGTIGLALARGVKRVIGVEIS 414 (534)
T ss_pred HHHHHhCCCCC--cEEEEEeecCCceehhhhccccceeeeecC
Confidence 34445556555 489999999999999999876677887765
No 270
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=75.65 E-value=17 Score=37.03 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=50.6
Q ss_pred eEEEECCCC-cHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCC--CCCCCccchheecccccCccCh
Q 046488 328 IGLDFSIGT-GTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRV--PFFDNTLDLIHTTRFLDGWIDF 403 (480)
Q Consensus 328 ~VLDVGCGt-G~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~L--PFpd~SFDlV~ss~vL~h~~d~ 403 (480)
+||=+|+|. |.++..+++. |+.++.++.+...+....++++-+...+....+.+ --..+.||+|+-... .
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g-----~- 248 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATG-----V- 248 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcC-----C-
Confidence 788888864 5566666654 88877776422112333344443333211101110 001245777774321 1
Q ss_pred hcHHHHHHHHHhcccCCcEEEEeec
Q 046488 404 VLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 404 ~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
...+.+..++|||||.+++...
T Consensus 249 ---~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 249 ---PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HHHHHHHHHHccCCcEEEEEec
Confidence 2368899999999999887654
No 271
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=75.28 E-value=8.5 Score=39.96 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=38.1
Q ss_pred chhhh--hHHHhcCCCCCC---CCeEEEECCCCcHHHHHHhh--CCCEEEEEecCCCh--hHHHHHHHh-CC---CCeee
Q 046488 309 LTADF--LIPEVLDIKPGE---IRIGLDFSIGTGTFAARMRE--FNVTLVSAIINLGA--PFNEMIALR-GL---VPLYI 375 (480)
Q Consensus 309 ~~ad~--~I~~vL~l~~g~---iR~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~~~--~~~~~iA~r-gl---ip~~~ 375 (480)
+.++| +|.++|...... .-++||||+|.-..=..|.. .|...+++++|... -+...++.. ++ |.+..
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 34454 455666643221 34799999998864333332 38888999887321 122233333 22 33322
Q ss_pred ec-----ccCCCCCCCccchheecccc
Q 046488 376 TI-----NQRVPFFDNTLDLIHTTRFL 397 (480)
Q Consensus 376 ~~-----ae~LPFpd~SFDlV~ss~vL 397 (480)
.. ...+--+++.||+..|.==|
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE----
T ss_pred cCCccccchhhhcccceeeEEecCCcc
Confidence 11 22233345689988886433
No 272
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=74.10 E-value=16 Score=37.20 Aligned_cols=90 Identities=11% Similarity=0.019 Sum_probs=48.5
Q ss_pred CeEEEECCC-CcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeec----ccCCCCCCCccchheecccccC
Q 046488 327 RIGLDFSIG-TGTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITI----NQRVPFFDNTLDLIHTTRFLDG 399 (480)
Q Consensus 327 R~VLDVGCG-tG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~----ae~LPFpd~SFDlV~ss~vL~h 399 (480)
.+||=+||| .|.++..+++. |+ .++.++.+ +...+++++-+....+.. ..++.-..+.||+|+-...
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~---~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVS---PRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCC---HHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 378878875 24455556653 76 46555543 223334444333322221 1111111234787764221
Q ss_pred ccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 400 WIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
. ...+.+..+.|||||.+++...
T Consensus 245 --~----~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --H----PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --C----HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 1367889999999999988654
No 273
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=73.20 E-value=4.7 Score=40.43 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=44.9
Q ss_pred hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCC-----hhHHHHHHHhC--------CCCeeeec-
Q 046488 312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLG-----APFNEMIALRG--------LVPLYITI- 377 (480)
Q Consensus 312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~-----~~~~~~iA~rg--------lip~~~~~- 377 (480)
...+.+.+.++++...+|||.=+|-|.=|..++..|..|+++.-+.. ...+....... .+.++.++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 33566777888875558999999999999888888988888764310 00111111111 12334444
Q ss_pred ccCCCCCCCccchheecccccC
Q 046488 378 NQRVPFFDNTLDLIHTTRFLDG 399 (480)
Q Consensus 378 ae~LPFpd~SFDlV~ss~vL~h 399 (480)
.+-|+.++++||+|+..=++.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 4446677999999998655544
No 274
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=71.03 E-value=25 Score=34.98 Aligned_cols=97 Identities=19% Similarity=0.116 Sum_probs=51.1
Q ss_pred hcCCCCCCCCeEEEECCC-CcHHHHHHhh-CCCE-EEEEecCCChhHHHHHHHhCCCCeeeecccC-----CCCCCCccc
Q 046488 318 VLDIKPGEIRIGLDFSIG-TGTFAARMRE-FNVT-LVSAIINLGAPFNEMIALRGLVPLYITINQR-----VPFFDNTLD 389 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~-Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~-----LPFpd~SFD 389 (480)
...+.++. +||-+|+| .|..++.+++ .|+. ++.++.+ ......+ .+.++...+..... .....+.+|
T Consensus 154 ~~~~~~g~--~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~--~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 154 LLGIKPGD--SVLVFGAGPIGLLLAQLLKLNGASRVTVAEPN--EEKLELA-KKLGATETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECCC--HHHHHHH-HHhCCeEEecCCCCCHHHHHHhcCCCCc
Confidence 34455554 78888865 2445555554 4776 4444432 2233333 33223222221110 112345688
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
+++.... . ...+.++.+.|+++|.++..++
T Consensus 229 ~v~~~~~-----~----~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 229 VVIEATG-----V----PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred EEEECCC-----C----hHHHHHHHHHHhcCCEEEEEec
Confidence 8874321 1 2378899999999999887543
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=70.12 E-value=24 Score=36.74 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=56.0
Q ss_pred eEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHh-CCCCeeeecccC------CCCC-CCccchheeccc
Q 046488 328 IGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALR-GLVPLYITINQR------VPFF-DNTLDLIHTTRF 396 (480)
Q Consensus 328 ~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~------LPFp-d~SFDlV~ss~v 396 (480)
+|+=+|||+ |.++..+++. |. .++.++.+ +.....|++ +.........+. +... ..-||+|+=...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~---~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS---PERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC---HHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 899999997 7777777664 54 45555543 344445555 443333222111 1111 236888873322
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK 432 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~ 432 (480)
. ..++.++.+++||||.+.+..+....
T Consensus 248 -----~----~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -----S----PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -----C----HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 1 34899999999999999988655433
No 276
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=70.12 E-value=8.7 Score=40.51 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=43.4
Q ss_pred CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe-----eccCChh---------hHHHHHHHHHHcCceeeE
Q 046488 386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID-----SFFCAKE---------DMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~-----~f~~~~e---------dL~~~~~~l~~lGfkkl~ 451 (480)
++||+|+..+.+.- ...+-.++.-|..+|||||+.+=. +|..... .++++..+++..||+.++
T Consensus 258 ~~~d~VvTcfFIDT---a~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDT---AHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEeec---hHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 57999987654322 112345899999999999995533 3333221 136788899999998776
Q ss_pred EE
Q 046488 452 WV 453 (480)
Q Consensus 452 W~ 453 (480)
-.
T Consensus 335 e~ 336 (369)
T KOG2798|consen 335 ER 336 (369)
T ss_pred ee
Confidence 54
No 277
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=70.06 E-value=29 Score=37.23 Aligned_cols=127 Identities=20% Similarity=0.147 Sum_probs=64.1
Q ss_pred hcCCCCCCCCeEEEECCCCcHHHHHHhhCCC------EEEEEecCCCh-hHHHHHHHhCCCCee-ee--cccCC------
Q 046488 318 VLDIKPGEIRIGLDFSIGTGTFAARMREFNV------TLVSAIINLGA-PFNEMIALRGLVPLY-IT--INQRV------ 381 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV------~Vv~vd~d~~~-~~~~~iA~rglip~~-~~--~ae~L------ 381 (480)
+|++++++ +|||+.+-.|+=++.|.+... .++.-+.+... .++.+...+-..+.. +. ++..+
T Consensus 150 ~L~v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 150 ALGVKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred hcccCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc
Confidence 45677886 899999999998877766411 34443333211 122222222111111 10 11111
Q ss_pred ---CCCCCccchheec----c--cccC--------ccC------hhcHHHHHHHHHhcccCCcEEEEeec-cCChhhHHH
Q 046488 382 ---PFFDNTLDLIHTT----R--FLDG--------WID------FVLLDFILYDWDRVLRPGGLLWIDSF-FCAKEDMND 437 (480)
Q Consensus 382 ---PFpd~SFDlV~ss----~--vL~h--------~~d------~~~l~~~L~EI~RVLKPGG~fiI~~f-~~~~edL~~ 437 (480)
+.....||-|.|. . .+.+ |.. +..--.++..-.|.|||||.++.+.- ..+.++..-
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaV 307 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAV 307 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHH
Confidence 3455678888762 1 1111 110 00112477888999999999988741 112222223
Q ss_pred HHHHHHHcC
Q 046488 438 YLEVFKMLK 446 (480)
Q Consensus 438 ~~~~l~~lG 446 (480)
..++++..|
T Consensus 308 V~~~L~~~~ 316 (375)
T KOG2198|consen 308 VQEALQKVG 316 (375)
T ss_pred HHHHHHHhc
Confidence 445555543
No 278
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=69.71 E-value=36 Score=34.01 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=53.0
Q ss_pred HhcCCCCCCCCeEEEECC--CCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeeccc--CC-----CCCCC
Q 046488 317 EVLDIKPGEIRIGLDFSI--GTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQ--RV-----PFFDN 386 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVGC--GtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae--~L-----PFpd~ 386 (480)
+...+.+|+ +||=.|. |.|.++..+++. |+.++.++.+ +.....+++-+....+...+ .+ ....+
T Consensus 132 ~~~~~~~g~--~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s---~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 132 EICGVKGGE--TVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS---DEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HHhCCCCCC--EEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEEEeccccccHHHHHHHhCCC
Confidence 334566664 7877774 577788777764 8887766533 22222333322322221110 00 01124
Q ss_pred ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
.+|+|+-.. . ...+.+..++|+|||.++..+
T Consensus 207 gvdvv~d~~-----G-----~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYFDNV-----G-----GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CeEEEEECC-----C-----HHHHHHHHHHhCcCcEEEEec
Confidence 578776321 1 125688999999999998653
No 279
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=69.10 E-value=36 Score=33.83 Aligned_cols=94 Identities=17% Similarity=0.083 Sum_probs=51.6
Q ss_pred CCCCCCCCeEEEECCC-CcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeeccc-CCC-CCCCccchheecc
Q 046488 320 DIKPGEIRIGLDFSIG-TGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQ-RVP-FFDNTLDLIHTTR 395 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCG-tG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae-~LP-Fpd~SFDlV~ss~ 395 (480)
.+.++ .+||-.|+| .|..+..+++. |+.++.++.+. .....+...+ ....+.... ... -..+.+|+++...
T Consensus 159 ~~~~~--~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~--~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~d~vi~~~ 233 (330)
T cd08245 159 GPRPG--ERVAVLGIGGLGHLAVQYARAMGFETVAITRSP--DKRELARKLG-ADEVVDSGAELDEQAAAGGADVILVTV 233 (330)
T ss_pred CCCCC--CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHhC-CcEEeccCCcchHHhccCCCCEEEECC
Confidence 44444 378888886 66666666654 88877766432 2233333333 222221100 000 0124588777421
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
. . ...+.++.+.|+++|.++...
T Consensus 234 ~-----~----~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 V-----S----GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred C-----c----HHHHHHHHHhcccCCEEEEEC
Confidence 1 1 236889999999999988753
No 280
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=68.99 E-value=14 Score=41.64 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=35.6
Q ss_pred CCccchheecccccCccChhcH-HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee
Q 046488 385 DNTLDLIHTTRFLDGWIDFVLL-DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK 449 (480)
Q Consensus 385 d~SFDlV~ss~vL~h~~d~~~l-~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk 449 (480)
+..||+++.. .|..-.+++.+ +.+|.+|.|.++|||.|.- | +.. ..+..-+...||+-
T Consensus 164 ~~~~d~~~lD-~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t--~-t~a---~~vr~~l~~~GF~v 222 (662)
T PRK01747 164 DARADAWFLD-GFAPAKNPDMWSPNLFNALARLARPGATLAT--F-TSA---GFVRRGLQEAGFTV 222 (662)
T ss_pred cccccEEEeC-CCCCccChhhccHHHHHHHHHHhCCCCEEEE--e-ehH---HHHHHHHHHcCCee
Confidence 3569999853 23332222111 3599999999999999764 2 111 23445677778863
No 281
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=68.88 E-value=16 Score=37.46 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=47.0
Q ss_pred CCeEEEECCCCcHHH-HHHhhC---CCEEEEEecCCChhHHH-HHHH-----hCCCCeeeecccCCCCCCCccchheecc
Q 046488 326 IRIGLDFSIGTGTFA-ARMREF---NVTLVSAIINLGAPFNE-MIAL-----RGLVPLYITINQRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 326 iR~VLDVGCGtG~fA-a~Lae~---gV~Vv~vd~d~~~~~~~-~iA~-----rglip~~~~~ae~LPFpd~SFDlV~ss~ 395 (480)
.++|+=||+|.=-++ ..|+++ +..+.++|.+..+.... ++.. ...+.+..++....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 468999999976554 455543 45667777763222211 2212 1223344455555665557899998654
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
... .....+ ..++..+.+.++||..+++-
T Consensus 201 lVg-~~~e~K-~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPK-EEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S-----SH-HHHHHHHHHHS-TTSEEEEE
T ss_pred hcc-cccchH-HHHHHHHHhhCCCCcEEEEe
Confidence 332 221122 57999999999999998875
No 282
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=68.38 E-value=5 Score=42.87 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=37.3
Q ss_pred CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
.++++||.++.+..+. |.++..+...+.++.|+++|||++++-..
T Consensus 291 ~~~~s~~~~vL~D~~D-wm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMD-WMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CCCCCeeEEEecchhh-hCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 4689999999877664 66667778899999999999999988643
No 283
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=67.19 E-value=43 Score=34.38 Aligned_cols=95 Identities=8% Similarity=0.040 Sum_probs=52.5
Q ss_pred cCCCCCCCCeEEEECC--CCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeecc------cCC-CCCCCcc
Q 046488 319 LDIKPGEIRIGLDFSI--GTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITIN------QRV-PFFDNTL 388 (480)
Q Consensus 319 L~l~~g~iR~VLDVGC--GtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a------e~L-PFpd~SF 388 (480)
..+.+|+ +||=.|+ |.|.++..+++. |+.++.++.+. .....+..+-+....+... +.+ ....+.+
T Consensus 154 ~~~~~g~--~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~--~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGD--SVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS--QKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCC--EEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 3455664 7888887 477888877764 88877765331 2222222122222222111 100 0112357
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+|+-.-. ...+.+..+.|++||.+++..
T Consensus 230 D~v~d~vG----------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYFDNVG----------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEEECCC----------HHHHHHHHHHhccCCEEEEEC
Confidence 77763211 136788999999999988754
No 284
>KOG2730 consensus Methylase [General function prediction only]
Probab=66.81 E-value=6.6 Score=39.55 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=54.0
Q ss_pred eEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC----CCC----eeeec----ccCCCCCCCccchheecc
Q 046488 328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG----LVP----LYITI----NQRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg----lip----~~~~~----ae~LPFpd~SFDlV~ss~ 395 (480)
.|+|.-||.|+.+...+.++..|+++++|..+.+ .|+.. +++ +..++ +..|-|...-+|+|..+
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa---~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s- 172 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIA---CARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS- 172 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHH---HHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC-
Confidence 6999999999999999999999999998743222 23332 222 33333 34455554445555533
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcE
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGL 422 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~ 422 (480)
-.|..+..+..-+.++.-.++|-|.
T Consensus 173 --ppwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 --PPWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred --CCCCCcchhhhhhhhhhhhcchhHH
Confidence 3455444444455555666666654
No 285
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=66.09 E-value=46 Score=31.33 Aligned_cols=89 Identities=18% Similarity=0.113 Sum_probs=49.8
Q ss_pred CeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec-----ccCC-CCCCCccchheeccccc
Q 046488 327 RIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI-----NQRV-PFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 327 R~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~L-PFpd~SFDlV~ss~vL~ 398 (480)
.+||..|+|+ |..++.++. .|..++.++.+. .....+...+ ....... .+.+ ....+.+|+|+....
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~--~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~-- 210 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD--EKLELAKELG-ADHVIDYKEEDLEEELRLTGGGGADVVIDAVG-- 210 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH--HHHHHHHHhC-CceeccCCcCCHHHHHHHhcCCCCCEEEECCC--
Confidence 4799999985 666666665 477777776442 2222222222 1111111 0000 123456888874321
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
.. ..+..+.+.|+++|.++...
T Consensus 211 ---~~----~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 211 ---GP----ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ---CH----HHHHHHHHhcccCCEEEEEc
Confidence 11 25778889999999988754
No 286
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=66.04 E-value=32 Score=34.43 Aligned_cols=89 Identities=15% Similarity=0.075 Sum_probs=47.8
Q ss_pred CeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeec----ccCCCCCCCccchheecccccC
Q 046488 327 RIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITI----NQRVPFFDNTLDLIHTTRFLDG 399 (480)
Q Consensus 327 R~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~----ae~LPFpd~SFDlV~ss~vL~h 399 (480)
.+||-.|||. |..+..+++ .|+ .++.++.+ ..... .+++-....++.. ...+....+.||+|+....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s--~~~~~-~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g--- 240 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGAAEIVATDLA--DAPLA-VARAMGADETVNLARDPLAAYAADKGDFDVVFEASG--- 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC--HHHHH-HHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC---
Confidence 4788888764 556655655 487 55555432 12222 3222222222211 1122222234888774322
Q ss_pred ccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 400 WIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
. ...+.++.+.|+++|.++...
T Consensus 241 --~----~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 --A----PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred --C----HHHHHHHHHHHhcCCEEEEEe
Confidence 1 236889999999999988654
No 287
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=65.95 E-value=64 Score=31.90 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=66.4
Q ss_pred eEEEECCCCcHHHHHHhhCCCEEE-EEecCCChhHHHHHHHhCCCCeeeecccCCC---CCCCccchheecc---ccc--
Q 046488 328 IGLDFSIGTGTFAARMREFNVTLV-SAIINLGAPFNEMIALRGLVPLYITINQRVP---FFDNTLDLIHTTR---FLD-- 398 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~Vv-~vd~d~~~~~~~~iA~rglip~~~~~ae~LP---Fpd~SFDlV~ss~---vL~-- 398 (480)
+++|+=||.|.+...|.+.|..++ +++.+ ..+.......-. ....++...+. ++. .+|+++... .++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~--~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~a 77 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEID--PDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIA 77 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESS--HHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecC--HHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEecc
Confidence 699999999999999999987654 44443 233332222222 33344433332 443 599888642 111
Q ss_pred ----CccCh-hcHHHHHHHHHhcccCCcEEEEe---eccCCh--hhHHHHHHHHHHcCceeeEEEEeec
Q 046488 399 ----GWIDF-VLLDFILYDWDRVLRPGGLLWID---SFFCAK--EDMNDYLEVFKMLKYKKHKWVVVPK 457 (480)
Q Consensus 399 ----h~~d~-~~l~~~L~EI~RVLKPGG~fiI~---~f~~~~--edL~~~~~~l~~lGfkkl~W~~~~k 457 (480)
...+. ..+-.-+.++.+.+||--. ++- .+.... ..++.+.+.++.+||. +.|.+..-
T Consensus 78 g~~~~~~d~r~~L~~~~~~~v~~~~Pk~~-~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~-v~~~vlna 144 (335)
T PF00145_consen 78 GKRKGFDDPRNSLFFEFLRIVKELKPKYF-LLENVPGLLSSKNGEVFKEILEELEELGYN-VQWRVLNA 144 (335)
T ss_dssp STHHCCCCHTTSHHHHHHHHHHHHS-SEE-EEEEEGGGGTGGGHHHHHHHHHHHHHTTEE-EEEEEEEG
T ss_pred ccccccccccchhhHHHHHHHhhccceEE-Eecccceeecccccccccccccccccccee-ehhccccH
Confidence 11122 2223344555566788543 443 233332 3457788899999996 55666543
No 288
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=65.77 E-value=43 Score=38.61 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=85.4
Q ss_pred CchhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEE----------EEEecCCC---hhHHHH-H--HHhCCC
Q 046488 308 NLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTL----------VSAIINLG---APFNEM-I--ALRGLV 371 (480)
Q Consensus 308 ~~~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~V----------v~vd~d~~---~~~~~~-i--A~rgli 371 (480)
..|+++-+..+|.--.-..+-.|=.|=|+|+.++.+.+.+... -+.++.-+ +|.... . ...+.+
T Consensus 305 ATGAHYKlRsIL~~~~i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcv 384 (675)
T PF14314_consen 305 ATGAHYKLRSILKNLNIKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCV 384 (675)
T ss_pred cccchhhHHHHHHhcCCCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceee
Confidence 3578887777665222223568999999999999887753221 11111111 122111 0 011223
Q ss_pred Ceeeecc--------cCCCC-------CCCccchheecccccCccChhcHHH-HHHHHHhcccCCcEEEEeeccCChhhH
Q 046488 372 PLYITIN--------QRVPF-------FDNTLDLIHTTRFLDGWIDFVLLDF-ILYDWDRVLRPGGLLWIDSFFCAKEDM 435 (480)
Q Consensus 372 p~~~~~a--------e~LPF-------pd~SFDlV~ss~vL~h~~d~~~l~~-~L~EI~RVLKPGG~fiI~~f~~~~edL 435 (480)
+....|. +.+.+ ..-++|+|++..=.....--..++. +..-+.++|.++|.+++-.|...--..
T Consensus 385 n~~~~W~~pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~ 464 (675)
T PF14314_consen 385 NLDTCWEHPSDLSDPETWKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSP 464 (675)
T ss_pred cchhhhcCccccCCccHHHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcc
Confidence 3222221 11111 2458999998543322211111233 444566899999999986554321111
Q ss_pred H-HHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEeCCC
Q 046488 436 N-DYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPR 476 (480)
Q Consensus 436 ~-~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qKP~~ 476 (480)
+ .....+.++ |+.+.+....-+.....|+|+ |+||+.+
T Consensus 465 ~~~il~~lg~~-F~~V~l~qT~~SSs~TSEVYl--v~~~~~~ 503 (675)
T PF14314_consen 465 DYNILDLLGRY-FKSVELVQTQFSSSFTSEVYL--VFQKLKK 503 (675)
T ss_pred hhhHHHHHHhh-cCceEEEECCCCCCCceEEEE--EEecccC
Confidence 1 122333332 777877665544446679998 5887765
No 289
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=65.30 E-value=40 Score=34.44 Aligned_cols=95 Identities=9% Similarity=-0.086 Sum_probs=51.2
Q ss_pred CCCCCCCCeEEEECCCC-cHHHHHHhhC-CCE-EEEEecCCChhHHHHHHHhCCCCeeeecc-----c---CCCCCCCcc
Q 046488 320 DIKPGEIRIGLDFSIGT-GTFAARMREF-NVT-LVSAIINLGAPFNEMIALRGLVPLYITIN-----Q---RVPFFDNTL 388 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV~-Vv~vd~d~~~~~~~~iA~rglip~~~~~a-----e---~LPFpd~SF 388 (480)
.+.+++ +||=.|+|. |..+..+++. |+. ++.++.+ +...+++++-+....+... + ++ ...+.+
T Consensus 173 ~~~~g~--~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~---~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~-~~~~g~ 246 (358)
T TIGR03451 173 GVKRGD--SVAVIGCGGVGDAAIAGAALAGASKIIAVDID---DRKLEWAREFGATHTVNSSGTDPVEAIRAL-TGGFGA 246 (358)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC---HHHHHHHHHcCCceEEcCCCcCHHHHHHHH-hCCCCC
Confidence 345554 788888753 4455556654 775 6666543 2333344443332222111 1 11 122357
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
|+|+-.-. .. ..+.+..+.||+||.+++....
T Consensus 247 d~vid~~g-----~~----~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 247 DVVIDAVG-----RP----ETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CEEEECCC-----CH----HHHHHHHHHhccCCEEEEECCC
Confidence 87763211 11 3678888999999999876543
No 290
>PHA01634 hypothetical protein
Probab=65.10 E-value=17 Score=33.98 Aligned_cols=63 Identities=8% Similarity=-0.194 Sum_probs=39.3
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhCCCCe-eee--c-ccCCCCCCCccchhe
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRGLVPL-YIT--I-NQRVPFFDNTLDLIH 392 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rglip~-~~~--~-ae~LPFpd~SFDlV~ 392 (480)
++|+|||.+.|..+.+++-+|+ .|+++.++ +...++..+...-. +.+ . ..+++-.-+-||+..
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~---~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~ 97 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGASFVVQYEKE---EKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFV 97 (156)
T ss_pred CEEEEecCCccchhhHHhhcCccEEEEeccC---HHHHHHHHHHhhhheeeeceeecccccccCCCcceEE
Confidence 5899999999999999998876 46677665 34444444432111 111 1 234554556677665
No 291
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=65.10 E-value=41 Score=33.90 Aligned_cols=94 Identities=13% Similarity=0.033 Sum_probs=52.2
Q ss_pred hcCCCCCCCCeEEEECC--CCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeec---------ccCCCCCC
Q 046488 318 VLDIKPGEIRIGLDFSI--GTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITI---------NQRVPFFD 385 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGC--GtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~---------ae~LPFpd 385 (480)
...+.+|+ +||=.|+ |.|.++..+++. |+.++.++.+. .....+..+-+....+.. ...+ ..
T Consensus 146 ~~~~~~g~--~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~--~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~--~~ 219 (338)
T cd08295 146 VCKPKKGE--TVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD--EKVDLLKNKLGFDDAFNYKEEPDLDAALKRY--FP 219 (338)
T ss_pred hcCCCCCC--EEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhcCCceeEEcCCcccHHHHHHHh--CC
Confidence 34566664 7887775 567777777764 88877765331 222222221122211110 0111 12
Q ss_pred CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+.+|+|+-.. . ...+.+..+.|+++|.++..+
T Consensus 220 ~gvd~v~d~~-----g-----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 220 NGIDIYFDNV-----G-----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CCcEEEEECC-----C-----HHHHHHHHHHhccCcEEEEec
Confidence 4678776321 1 136889999999999988654
No 292
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=64.95 E-value=3.6 Score=38.35 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=18.0
Q ss_pred HHHHHHHHhcccCCcEEEEe
Q 046488 407 DFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 407 ~~~L~EI~RVLKPGG~fiI~ 426 (480)
...+.|+.|||||||.+++.
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhhcCCCeeEEEE
Confidence 56899999999999998885
No 293
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=63.97 E-value=15 Score=39.64 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=67.0
Q ss_pred CCeEEEECCCCcHHHHHHhhCC-C-EEEEEecCCChhHHHHHHH-----hC---C------CCeeeec-ccCCCCCCCcc
Q 046488 326 IRIGLDFSIGTGTFAARMREFN-V-TLVSAIINLGAPFNEMIAL-----RG---L------VPLYITI-NQRVPFFDNTL 388 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~g-V-~Vv~vd~d~~~~~~~~iA~-----rg---l------ip~~~~~-ae~LPFpd~SF 388 (480)
.+.||=+|.|.|--+..+.+.. + +++-+++| |.....+. +. + +.++.++ .+-+--..+.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLD---P~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLD---PRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecC---HHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5789999999999999998873 3 33334443 22222222 11 1 1122222 12233345689
Q ss_pred chheecccccCccChh--cH-----HHHHHHHHhcccCCcEEEEee---ccCChhhHHHHHHHHHHcCceeeEEEE
Q 046488 389 DLIHTTRFLDGWIDFV--LL-----DFILYDWDRVLRPGGLLWIDS---FFCAKEDMNDYLEVFKMLKYKKHKWVV 454 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~--~l-----~~~L~EI~RVLKPGG~fiI~~---f~~~~edL~~~~~~l~~lGfkkl~W~~ 454 (480)
|.|+... +|+. .+ ..+..-..|-|+++|.+++.. |+.+. ..=.+...+++.||...-.++
T Consensus 367 D~vIVDl-----~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~-vfw~i~aTik~AG~~~~Pyhv 436 (508)
T COG4262 367 DVVIVDL-----PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR-VFWRIDATIKSAGYRVWPYHV 436 (508)
T ss_pred cEEEEeC-----CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc-eeeeehhHHHhCcceeeeeEE
Confidence 9888532 2211 00 235667788899999999862 33322 111234567888987655444
No 294
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=63.76 E-value=38 Score=35.08 Aligned_cols=96 Identities=21% Similarity=0.111 Sum_probs=56.8
Q ss_pred hcCCCCCCCCeEEEEC--CCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeee-----cccCC--CCCCCc
Q 046488 318 VLDIKPGEIRIGLDFS--IGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYIT-----INQRV--PFFDNT 387 (480)
Q Consensus 318 vL~l~~g~iR~VLDVG--CGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~-----~ae~L--PFpd~S 387 (480)
..++++|+ +||=.| .|.|.++..|++. |..++.+.-.. +... .+++-+....+. +.+++ .....-
T Consensus 137 ~~~l~~g~--~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~--~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGE--TVLVHGAAGGVGSAAIQLAKALGATVVAVVSSS--EKLE-LLKELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCC--EEEEecCCchHHHHHHHHHHHcCCcEEEEecCH--HHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 34466665 788877 5678899999886 76655554321 2222 444433333322 22222 122346
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
+|+|+..-. ...+.+..+.|+|||.++....
T Consensus 212 vDvv~D~vG----------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 212 VDVVLDTVG----------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ceEEEECCC----------HHHHHHHHHHhccCCEEEEEec
Confidence 888774221 3478889999999999887543
No 295
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=62.72 E-value=61 Score=32.02 Aligned_cols=95 Identities=7% Similarity=-0.072 Sum_probs=51.9
Q ss_pred HhcCCCCCCCCeEEEEC--CCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeec-----ccCC-CCCCCc
Q 046488 317 EVLDIKPGEIRIGLDFS--IGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITI-----NQRV-PFFDNT 387 (480)
Q Consensus 317 ~vL~l~~g~iR~VLDVG--CGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~L-PFpd~S 387 (480)
+...+.+|+ +||=.| .|.|.++..+++. |+.++.++.+. .. ...+++-+....+.. .+.+ ....+.
T Consensus 137 ~~~~~~~g~--~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~--~~-~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 137 EICKPKAGE--TVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD--DK-VAWLKELGFDAVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred HhcCCCCCC--EEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH--HH-HHHHHHcCCCEEEeCCCccHHHHHHHHCCCC
Confidence 344455664 677776 4567777777764 88877665331 22 222222222222211 0100 011245
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+|+|+-... ...+.+..+.|+++|.++..
T Consensus 212 vd~vld~~g----------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG----------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC----------HHHHHHHHHhhccCCEEEEE
Confidence 787773211 13678999999999998764
No 296
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=62.58 E-value=55 Score=32.78 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=53.0
Q ss_pred hcCCCCCCCCeEEEECCCC-cHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeec-----ccCC--CCCCCcc
Q 046488 318 VLDIKPGEIRIGLDFSIGT-GTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITI-----NQRV--PFFDNTL 388 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~L--PFpd~SF 388 (480)
+..+.++. +||-.|+|. |..+..+++. |+.++.+..+ ......+...+ ....+.. .+.+ -..++.+
T Consensus 154 ~~~l~~g~--~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s--~~~~~~~~~~g-~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 154 RAGVTAGD--TVLVVGAGPIGLGVIQVAKARGARVIVVDID--DERLEFARELG-ADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHhC-CCEEecCcccCHHHHHHHHhCCCCC
Confidence 44455554 788888763 6666677664 8887766433 22223332223 2222111 1111 0134458
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+++.... . ...+.++.+.|+++|.++...
T Consensus 229 d~vld~~g-----~----~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 229 DVVIDATG-----N----PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CEEEECCC-----C----HHHHHHHHHHHhcCCEEEEEc
Confidence 88874321 1 236889999999999987653
No 297
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=61.95 E-value=20 Score=35.40 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=42.9
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHhh------CCCEEEEEecCCChhHHHHHH---HhCCCCeeeeccc------CCCCC-
Q 046488 321 IKPGEIRIGLDFSIGTGTFAARMRE------FNVTLVSAIINLGAPFNEMIA---LRGLVPLYITINQ------RVPFF- 384 (480)
Q Consensus 321 l~~g~iR~VLDVGCGtG~fAa~Lae------~gV~Vv~vd~d~~~~~~~~iA---~rglip~~~~~ae------~LPFp- 384 (480)
++|. +|+++|.-.|+-+..+|+ ....|+++|++........+. ....+.++.++.. +.-.-
T Consensus 31 ~kPd---~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 31 LKPD---LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp H--S---EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS-
T ss_pred hCCC---eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhh
Confidence 5554 799999998886655543 135788888753211111111 1134555555421 11111
Q ss_pred -CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 385 -DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 385 -d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
...-.+|+- --+|..+.. ...|.-....+.||+|+++.
T Consensus 108 ~~~~~vlVil--Ds~H~~~hv--l~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 108 SPPHPVLVIL--DSSHTHEHV--LAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp ---SSEEEEE--SS----SSH--HHHHHHHHHT--TT-EEEET
T ss_pred ccCCceEEEE--CCCccHHHH--HHHHHHhCccCCCCCEEEEE
Confidence 122234432 112333332 34667789999999999885
No 298
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=59.81 E-value=48 Score=34.15 Aligned_cols=95 Identities=15% Similarity=0.070 Sum_probs=50.3
Q ss_pred CCCCCCCCeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeecc-----cCC-CCCCCccch
Q 046488 320 DIKPGEIRIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITIN-----QRV-PFFDNTLDL 390 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~a-----e~L-PFpd~SFDl 390 (480)
.+.+++ +||=.|+|. |.++..+++ .|+ .++.++.+ +....++++-+....+... +.+ ...++.+|+
T Consensus 188 ~i~~g~--~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~---~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 188 GVRPGQ--SVAVVGLGGVGLSALLGAVAAGASQVVAVDLN---EDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCC---HHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 455554 566688753 455566665 477 46666543 2333344443332222110 100 011225777
Q ss_pred heecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
|+-... . ...+.+..+.|++||.+++...
T Consensus 263 vid~~G-----~----~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 263 AFEMAG-----S----VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EEECCC-----C----hHHHHHHHHHHhcCCEEEEEcc
Confidence 763211 1 2368888999999999887653
No 299
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=59.70 E-value=16 Score=37.08 Aligned_cols=87 Identities=17% Similarity=0.063 Sum_probs=46.2
Q ss_pred hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh-hHHHHHHHhCCCCeeeecccCCC-CCCCc
Q 046488 312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA-PFNEMIALRGLVPLYITINQRVP-FFDNT 387 (480)
Q Consensus 312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~-~~~~~iA~rglip~~~~~ae~LP-Fpd~S 387 (480)
|.+++.++..-+. ..+|+|||||.=-++...... +..+++.|+|... ++...+...-..+....+.+.+. -+...
T Consensus 93 d~fY~~if~~~~~-p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~ 171 (251)
T PF07091_consen 93 DEFYDEIFGRIPP-PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEP 171 (251)
T ss_dssp HHHHHHHCCCS----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSE
T ss_pred HHHHHHHHhcCCC-CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCC
Confidence 4455666664332 568999999999998877665 5788888877311 11222222222332222222222 25678
Q ss_pred cchheecccccC
Q 046488 388 LDLIHTTRFLDG 399 (480)
Q Consensus 388 FDlV~ss~vL~h 399 (480)
.|+.+..-+++-
T Consensus 172 ~DlaLllK~lp~ 183 (251)
T PF07091_consen 172 ADLALLLKTLPC 183 (251)
T ss_dssp ESEEEEET-HHH
T ss_pred cchhhHHHHHHH
Confidence 999987665543
No 300
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=58.89 E-value=59 Score=32.10 Aligned_cols=89 Identities=16% Similarity=-0.002 Sum_probs=47.6
Q ss_pred eEEEECCCC-cHHHHHHhh-CCCE-EEEEecCCChhHHHHHHHhCCCCeeeec------ccCCCCCCCccchheeccccc
Q 046488 328 IGLDFSIGT-GTFAARMRE-FNVT-LVSAIINLGAPFNEMIALRGLVPLYITI------NQRVPFFDNTLDLIHTTRFLD 398 (480)
Q Consensus 328 ~VLDVGCGt-G~fAa~Lae-~gV~-Vv~vd~d~~~~~~~~iA~rglip~~~~~------ae~LPFpd~SFDlV~ss~vL~ 398 (480)
+||=+|+|+ |.+++.+++ +|+. ++.++.+ +...+++++-+....+.. ...+ .....+|+|+-...
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~---~~r~~~a~~~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vid~~G-- 196 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADPS---PDRRELALSFGATALAEPEVLAERQGGL-QNGRGVDVALEFSG-- 196 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCC---HHHHHHHHHcCCcEecCchhhHHHHHHH-hCCCCCCEEEECCC--
Confidence 688888753 445555555 4776 5555433 223334444333222211 0111 12235777763211
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
. ...+.+..+.|||||++++....
T Consensus 197 ---~----~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 197 ---A----TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred ---C----hHHHHHHHHHhcCCCEEEEeccC
Confidence 1 23688899999999999877643
No 301
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=58.44 E-value=21 Score=33.14 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=41.7
Q ss_pred CccchheecccccCccC------hhcHHHHHHHHHhcccCCcEEEEeeccCChh---hHHHHHHHHHH---cCceeeEEE
Q 046488 386 NTLDLIHTTRFLDGWID------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKE---DMNDYLEVFKM---LKYKKHKWV 453 (480)
Q Consensus 386 ~SFDlV~ss~vL~h~~d------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e---dL~~~~~~l~~---lGfkkl~W~ 453 (480)
+.+|+|+.+...-+-.| ++.--.++..+.+.|+|||.+.+..|..... +.+.+.+.++. -.|.-+++.
T Consensus 45 ~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 45 GPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp --EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 58898886644322222 2222458999999999999999887664443 33334444444 346666666
Q ss_pred Eeecc
Q 046488 454 VVPKR 458 (480)
Q Consensus 454 ~~~k~ 458 (480)
...+.
T Consensus 125 ~~N~~ 129 (140)
T PF06962_consen 125 FINQK 129 (140)
T ss_dssp ESS-S
T ss_pred ccCCC
Confidence 65443
No 302
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=58.06 E-value=65 Score=35.90 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=52.5
Q ss_pred CeEEEECCCCcHH-HHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCee-eeccc----------CCC----------C
Q 046488 327 RIGLDFSIGTGTF-AARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLY-ITINQ----------RVP----------F 383 (480)
Q Consensus 327 R~VLDVGCGtG~f-Aa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~-~~~ae----------~LP----------F 383 (480)
.+|+=+|||.-.. +...++ .|..|+.+|.+. ...+ .+++-+.... +...+ .+. |
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~--~rle-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP--EVAE-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHH-HHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 4899999998554 444554 488877777552 2333 3333222211 11111 011 1
Q ss_pred CC--CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 384 FD--NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 384 pd--~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
.+ +.+|+|+.......-..+. .+..|+.+.+||||.++..
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~---lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPK---LITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcc---hHHHHHHHhcCCCCEEEEE
Confidence 11 4689999755432111221 2359999999999997765
No 303
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.39 E-value=2.1e+02 Score=29.51 Aligned_cols=136 Identities=13% Similarity=0.191 Sum_probs=68.9
Q ss_pred EEEECCCCcHHHHHHhhCCCEEEE-EecCCChhHHHHHHHhCCCCeeeecccCCCCC-CCccchheeccc---cc-----
Q 046488 329 GLDFSIGTGTFAARMREFNVTLVS-AIINLGAPFNEMIALRGLVPLYITINQRVPFF-DNTLDLIHTTRF---LD----- 398 (480)
Q Consensus 329 VLDVGCGtG~fAa~Lae~gV~Vv~-vd~d~~~~~~~~iA~rglip~~~~~ae~LPFp-d~SFDlV~ss~v---L~----- 398 (480)
|+|+=||.|.+...|.+.|..++. ++.+ ..+.......-.-....++...+... -..+|+++.+.- ++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~--~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~ 78 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEID--KYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKR 78 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCC--HHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhccc
Confidence 689999999999999888887654 4433 23333222221112223333332210 124788875411 11
Q ss_pred -CccChhcHHHHHHHHHhcc---cCCcEEEEee---ccC--ChhhHHHHHHHHHHcCceeeEEEEeeccC----CCCcce
Q 046488 399 -GWIDFVLLDFILYDWDRVL---RPGGLLWIDS---FFC--AKEDMNDYLEVFKMLKYKKHKWVVVPKRD----KDDREV 465 (480)
Q Consensus 399 -h~~d~~~l~~~L~EI~RVL---KPGG~fiI~~---f~~--~~edL~~~~~~l~~lGfkkl~W~~~~k~d----~~~~E~ 465 (480)
.+.+.. ..++.++.|++ +|. +|++-. +.. ....++.+...++.+||.- .|.+..-.+ +.+.-+
T Consensus 79 ~~~~d~r--~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v-~~~~l~a~dyGvPQ~R~R~ 154 (315)
T TIGR00675 79 KGFEDTR--GTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKV-YYKVLNAKDFGVPQNRERI 154 (315)
T ss_pred CCCCCch--hhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEE-EEEEEcHHHCCCCCCccEE
Confidence 111221 34556665555 775 333322 221 1234567788889999964 555433222 134445
Q ss_pred eEEEE
Q 046488 466 FFSAV 470 (480)
Q Consensus 466 ~lsav 470 (480)
|+.++
T Consensus 155 f~ia~ 159 (315)
T TIGR00675 155 YIVGF 159 (315)
T ss_pred EEEEE
Confidence 55543
No 304
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=56.18 E-value=46 Score=34.36 Aligned_cols=86 Identities=15% Similarity=0.035 Sum_probs=45.7
Q ss_pred eEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec-----ccCCCCCCCccchheecccccCc
Q 046488 328 IGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI-----NQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 328 ~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
+||=.|+| .|.++..+++ .|+.++.++.+. +....++++-+....+.. ...+. +.+|+|+-...
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi~~~~~~~~~~~~---~~~D~vid~~g---- 256 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFLVSTDPEKMKAAI---GTMDYIIDTVS---- 256 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEEcCCCHHHHHhhc---CCCCEEEECCC----
Confidence 67778875 3556666665 488776655432 222223333222222211 11111 23677763211
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
. ...+.+..+.||+||.++...
T Consensus 257 -~----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 -A----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred -C----HHHHHHHHHHhcCCcEEEEeC
Confidence 1 236888999999999988653
No 305
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=55.84 E-value=60 Score=33.12 Aligned_cols=93 Identities=14% Similarity=-0.014 Sum_probs=47.8
Q ss_pred CCCCCCCeEEEECCCC-cHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheeccc
Q 046488 321 IKPGEIRIGLDFSIGT-GTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRF 396 (480)
Q Consensus 321 l~~g~iR~VLDVGCGt-G~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~v 396 (480)
+++|+ +||=+|||. |.++..++++ +..++.++.+. .....+++ ...... .+.+. .+..+|+|+-.-.
T Consensus 161 ~~~g~--~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~---~k~~~a~~--~~~~~~-~~~~~-~~~g~d~viD~~G 231 (341)
T cd08237 161 HKDRN--VIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ---EKLDLFSF--ADETYL-IDDIP-EDLAVDHAFECVG 231 (341)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH---hHHHHHhh--cCceee-hhhhh-hccCCcEEEECCC
Confidence 34454 788899864 4455555542 34566666442 22223332 111111 01111 1113777763211
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
.-.. ...+.+..+.|||||.+++..+
T Consensus 232 --~~~~----~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 232 --GRGS----QSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --CCcc----HHHHHHHHHhCcCCcEEEEEee
Confidence 0001 2478999999999999987654
No 306
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=55.60 E-value=91 Score=30.09 Aligned_cols=95 Identities=16% Similarity=0.032 Sum_probs=49.7
Q ss_pred hcCCCCCCCCeEEEECCCC-cHHHHHHhh-CCCE-EEEEecCCChhHHHHHHHhCC-CCeeeecccCCCCCCCccchhee
Q 046488 318 VLDIKPGEIRIGLDFSIGT-GTFAARMRE-FNVT-LVSAIINLGAPFNEMIALRGL-VPLYITINQRVPFFDNTLDLIHT 393 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~-Vv~vd~d~~~~~~~~iA~rgl-ip~~~~~ae~LPFpd~SFDlV~s 393 (480)
...+.+++ +||=.|+|. |..+..+++ .|+. ++.++.+. +... .+.+-+ ........+.+ ...+.+|+|+.
T Consensus 92 ~~~~~~g~--~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~--~~~~-~~~~~g~~~~~~~~~~~~-~~~~~~d~vl~ 165 (277)
T cd08255 92 DAEPRLGE--RVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDA--ARRE-LAEALGPADPVAADTADE-IGGRGADVVIE 165 (277)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEEECCCH--HHHH-HHHHcCCCccccccchhh-hcCCCCCEEEE
Confidence 33455554 677778764 445555555 4777 76665332 2222 333322 11111111111 13446887774
Q ss_pred cccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
... . ...+.+..+.|+++|.++...
T Consensus 166 ~~~-----~----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 166 ASG-----S----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ccC-----C----hHHHHHHHHHhcCCcEEEEEe
Confidence 211 1 236788999999999987653
No 307
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=54.91 E-value=49 Score=33.23 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=45.1
Q ss_pred eEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhc
Q 046488 328 IGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVL 405 (480)
Q Consensus 328 ~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~ 405 (480)
+||=+||| .|.++..+++ .|+.++.+. +..... .+.+.+ ... ....+. ..+.||+|+-... .
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~-~~~~~r-l~~a~~--~~~-i~~~~~---~~~g~Dvvid~~G-----~--- 210 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVW-ETNPRR-RDGATG--YEV-LDPEKD---PRRDYRAIYDASG-----D--- 210 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEe-CCCHHH-HHhhhh--ccc-cChhhc---cCCCCCEEEECCC-----C---
Confidence 57777875 4667777765 487644332 221122 222221 111 111111 2345887774321 1
Q ss_pred HHHHHHHHHhcccCCcEEEEeec
Q 046488 406 LDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 406 l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
...+.++.+.|+|||++++..+
T Consensus 211 -~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 -PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -HHHHHHHHHhhhcCcEEEEEee
Confidence 2367888999999999987654
No 308
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=54.84 E-value=48 Score=35.45 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=53.0
Q ss_pred eEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHH-HHHHHhCCCCe-eeecccCCCCCCCccchheecccccCccC-hh
Q 046488 328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFN-EMIALRGLVPL-YITINQRVPFFDNTLDLIHTTRFLDGWID-FV 404 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~-~~iA~rglip~-~~~~ae~LPFpd~SFDlV~ss~vL~h~~d-~~ 404 (480)
.||=+|=..|.++..|+..++..+ .|.-.++.+. ...+..| ++. .+......+-.++.+|+|+. .|+. ..
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~-~~~~~~~~~~~~~~~~~~~d~vl~-----~~PK~~~ 119 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNG-IDESSVKFLDSTADYPQQPGVVLI-----KVPKTLA 119 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcC-CCcccceeecccccccCCCCEEEE-----EeCCCHH
Confidence 589999999999999997776543 1211111222 2223333 321 11111112222344888763 4442 33
Q ss_pred cHHHHHHHHHhcccCCcEEEEe
Q 046488 405 LLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 405 ~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
.++..+..+.++|.||+.+++.
T Consensus 120 ~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 120 LLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred HHHHHHHHHHhhCCCCCEEEEE
Confidence 4567888899999999997654
No 309
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=54.08 E-value=76 Score=31.79 Aligned_cols=95 Identities=9% Similarity=0.000 Sum_probs=52.1
Q ss_pred cCCCCCCCCeEEEECC--CCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeec--------ccCCCCCCC
Q 046488 319 LDIKPGEIRIGLDFSI--GTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITI--------NQRVPFFDN 386 (480)
Q Consensus 319 L~l~~g~iR~VLDVGC--GtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~--------ae~LPFpd~ 386 (480)
..+.++...+||=.|+ |.|.++..+++. |+ .++.++.+. .....++.+-+...++.. ..++ .++
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~--~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~--~~~ 223 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD--EKCQLLKSELGFDAAINYKTDNVAERLREL--CPE 223 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHhcCCcEEEECCCCCHHHHHHHH--CCC
Confidence 3455553347887875 577787777764 87 677765331 222223221222222211 1111 124
Q ss_pred ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
.+|+|+-... . ..+.+..+.|+|||.++..+
T Consensus 224 gvd~vid~~g-----~-----~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 224 GVDVYFDNVG-----G-----EISDTVISQMNENSHIILCG 254 (345)
T ss_pred CceEEEECCC-----c-----HHHHHHHHHhccCCEEEEEe
Confidence 6888874211 1 14678899999999988643
No 310
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=53.44 E-value=25 Score=36.39 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=25.5
Q ss_pred hhcHHHHHHHHHhcccCCcEEEEeeccCChh
Q 046488 403 FVLLDFILYDWDRVLRPGGLLWIDSFFCAKE 433 (480)
Q Consensus 403 ~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e 433 (480)
...|+.+|..+..+|+|||+++|..|..-.+
T Consensus 212 l~~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 212 LEELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 3456789999999999999999988875544
No 311
>PLN02827 Alcohol dehydrogenase-like
Probab=52.75 E-value=83 Score=32.78 Aligned_cols=93 Identities=23% Similarity=0.138 Sum_probs=48.4
Q ss_pred cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCCE-EEEEecCCChhHHHHHHHhCCCCeeeecc----------cCCCCCC
Q 046488 319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNVT-LVSAIINLGAPFNEMIALRGLVPLYITIN----------QRVPFFD 385 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~-Vv~vd~d~~~~~~~~iA~rglip~~~~~a----------e~LPFpd 385 (480)
.++.+++ +||=.|+|+ |.++..+++ .|+. ++.++.+ +.....+++-+....+... .++. .
T Consensus 189 ~~~~~g~--~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~---~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~--~ 261 (378)
T PLN02827 189 ADVSKGS--SVVIFGLGTVGLSVAQGAKLRGASQIIGVDIN---PEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMT--G 261 (378)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEECCC---HHHHHHHHHcCCcEEEcccccchHHHHHHHHHh--C
Confidence 3455554 788888653 445555554 4774 5555433 2233344433332222110 1111 1
Q ss_pred CccchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEee
Q 046488 386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDS 427 (480)
Q Consensus 386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~ 427 (480)
+.+|+|+-.-. .. ..+.+..+.||+| |.+++..
T Consensus 262 ~g~d~vid~~G-----~~----~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFECVG-----DT----GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEECCC-----Ch----HHHHHHHHhhccCCCEEEEEC
Confidence 25777763211 11 2678889999999 9988754
No 312
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=50.72 E-value=1.2e+02 Score=30.42 Aligned_cols=96 Identities=14% Similarity=0.008 Sum_probs=49.6
Q ss_pred cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCCE-EEEEecCCChhHHHHHHHhCCCCeeeeccc----CC-C-CCCCccc
Q 046488 319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNVT-LVSAIINLGAPFNEMIALRGLVPLYITINQ----RV-P-FFDNTLD 389 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~-Vv~vd~d~~~~~~~~iA~rglip~~~~~ae----~L-P-Fpd~SFD 389 (480)
+.+.+++ +||=+|+|. |.++..+++ .|+. ++.++.+ +.....+++-+...++...+ .+ . ...+.||
T Consensus 159 ~~~~~g~--~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~---~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 159 VGVSGRD--TVLVVGAGPVGLGALMLARALGAEDVIGVDPS---PERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCC---HHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 3455554 677777642 344555554 4777 6665533 22233333322322222110 01 0 1233688
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
+|+-... . ...+.+..+.|+++|.+++...
T Consensus 234 ~vid~~g-----~----~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 234 VAIECSG-----N----TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EEEECCC-----C----HHHHHHHHHHhhcCCEEEEEcC
Confidence 7773221 1 2356788899999999987643
No 313
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=50.72 E-value=89 Score=31.20 Aligned_cols=92 Identities=17% Similarity=0.079 Sum_probs=47.3
Q ss_pred CCCCCCCeEEEECCC-CcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeec--------ccCCCCCCCccc
Q 046488 321 IKPGEIRIGLDFSIG-TGTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITI--------NQRVPFFDNTLD 389 (480)
Q Consensus 321 l~~g~iR~VLDVGCG-tG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~--------ae~LPFpd~SFD 389 (480)
+.+++ +||-.|+| .|..+..+++. |. .++.++.+ ... ...+.+-+...++.. ..++ ...+.+|
T Consensus 165 ~~~~~--~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~--~~~-~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d 238 (347)
T cd05278 165 IKPGS--TVAVIGAGPVGLCAVAGARLLGAARIIAVDSN--PER-LDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVD 238 (347)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC--HHH-HHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCc
Confidence 44443 67777765 35565666554 75 55555322 122 222222112211111 1111 1335688
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+++-... . ...+.++.+.|+++|.++..+
T Consensus 239 ~vld~~g-----~----~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 239 CVIEAVG-----F----EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEEccC-----C----HHHHHHHHHHhhcCCEEEEEc
Confidence 8774211 1 137889999999999988643
No 314
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=50.68 E-value=1.8e+02 Score=30.08 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=68.7
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC-CCeeeec-----ccCCCCCCCccchheecc---cc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL-VPLYITI-----NQRVPFFDNTLDLIHTTR---FL 397 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl-ip~~~~~-----ae~LPFpd~SFDlV~ss~---vL 397 (480)
.+++|+=||.|.+...+...|.+++... +..+.+......... ......+ .+.++.. .+|+++... .+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~-Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~--~~DvligGpPCQ~F 80 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFAN-EIDPPAVATYKANFPHGDIILGDIKELDGEALRKS--DVDVLIGGPPCQDF 80 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEE-ecCHHHHHHHHHhCCCCceeechHhhcChhhcccc--CCCEEEeCCCCcch
Confidence 4799999999999999988887765443 222333333333222 1222232 2222222 789988642 11
Q ss_pred cC------ccC-hhcHHHHHHHHHhcccCCcEEEEee---ccC-ChhhHHHHHHHHHHcCceeeEEEEe
Q 046488 398 DG------WID-FVLLDFILYDWDRVLRPGGLLWIDS---FFC-AKEDMNDYLEVFKMLKYKKHKWVVV 455 (480)
Q Consensus 398 ~h------~~d-~~~l~~~L~EI~RVLKPGG~fiI~~---f~~-~~edL~~~~~~l~~lGfkkl~W~~~ 455 (480)
+. ..| +..|-.-+.++...++| -+|++-. ... ....++.+...++.+||. +.|.+.
T Consensus 81 S~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~-~~~~il 147 (328)
T COG0270 81 SIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG-VEFNIL 147 (328)
T ss_pred hhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc-chHhee
Confidence 11 111 22222345556666789 4445432 211 234567788999999998 556554
No 315
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=50.65 E-value=92 Score=31.65 Aligned_cols=119 Identities=12% Similarity=0.017 Sum_probs=54.9
Q ss_pred CCeEEEECCCCc-HHHHHHhhCCCEEEEEecCC-ChhHHHHHHHhCCCCe--eee-cccCCCCC-CCccchheecccccC
Q 046488 326 IRIGLDFSIGTG-TFAARMREFNVTLVSAIINL-GAPFNEMIALRGLVPL--YIT-INQRVPFF-DNTLDLIHTTRFLDG 399 (480)
Q Consensus 326 iR~VLDVGCGtG-~fAa~Lae~gV~Vv~vd~d~-~~~~~~~iA~rglip~--~~~-~ae~LPFp-d~SFDlV~ss~vL~h 399 (480)
.++||=+|=.-- ++|.+|......++.+++|. .-.+....|++.++++ ++. .-..||-. -+.||++++.= .
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP---P 121 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP---P 121 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE------
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC---C
Confidence 357888885554 35556655544554455442 1123345566555443 222 24445432 58999999732 1
Q ss_pred ccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---hhHHHHHHHHHHcCce
Q 046488 400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---EDMNDYLEVFKMLKYK 448 (480)
Q Consensus 400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---edL~~~~~~l~~lGfk 448 (480)
+ ..+.+..++.--...||..|-..+.++.... +....+++.+..+|+-
T Consensus 122 y-T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 122 Y-TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp S-SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred C-CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 1 2233466788888889887743333433332 2334577888888864
No 316
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.90 E-value=91 Score=31.43 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=49.1
Q ss_pred hcCCCCCCCCeEEEECCCC-cHHHHHHhhC-CCE-EEEEecCCChhHHHHHHHhCCCCeeeec-ccC-------C--CCC
Q 046488 318 VLDIKPGEIRIGLDFSIGT-GTFAARMREF-NVT-LVSAIINLGAPFNEMIALRGLVPLYITI-NQR-------V--PFF 384 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV~-Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae~-------L--PFp 384 (480)
...+.++. +||-.|+|. |..+..+++. |+. ++.++.+. .....+ ++-+...+... ... + ...
T Consensus 157 ~~~~~~g~--~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~--~~~~~~-~~~g~~~vi~~~~~~~~~~~~~~~~~~~ 231 (343)
T cd05285 157 RAGVRPGD--TVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDP--SRLEFA-KELGATHTVNVRTEDTPESAEKIAELLG 231 (343)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH--HHHHHH-HHcCCcEEeccccccchhHHHHHHHHhC
Confidence 34455554 566677654 5566666654 776 55544321 222222 22122111111 000 0 123
Q ss_pred CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
...||+|+-... . ...+.++.+.|+++|.++...
T Consensus 232 ~~~~d~vld~~g-----~----~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 232 GKGPDVVIECTG-----A----ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCEEEECCC-----C----HHHHHHHHHHhhcCCEEEEEc
Confidence 455888874221 1 236889999999999988653
No 317
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=49.38 E-value=1.2e+02 Score=31.00 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=49.0
Q ss_pred CCCCCCCCeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeeccc----C----CC--CCCCc
Q 046488 320 DIKPGEIRIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQ----R----VP--FFDNT 387 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae----~----LP--Fpd~S 387 (480)
.+.+++ +||=.|+|. |..+..+++ .|+.++.++.+ +.....+++-+....+...+ . +. ...+-
T Consensus 163 ~~~~g~--~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~---~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 163 GLKKGD--LVIVIGAGGVGGYMVQTAKAMGAAVVAIDID---PEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCC
Confidence 455554 799999854 556566655 48777766543 22233333322222221100 0 00 11122
Q ss_pred cc----hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 388 LD----LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 388 FD----lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
+| +|+ ..... ..++....+.|++||.+++.+..
T Consensus 238 ~d~~~d~v~-----d~~g~----~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 238 LRSTGWKIF-----ECSGS----KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CCCCcCEEE-----ECCCC----hHHHHHHHHHHhcCCeEEEECcC
Confidence 33 333 11111 23677888999999999886543
No 318
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=48.54 E-value=66 Score=35.65 Aligned_cols=98 Identities=19% Similarity=0.059 Sum_probs=56.6
Q ss_pred CeEEEECCCCcH--HHHHHhhCC-C-EEEEEecCCChhHHHHHH--HhC----CCCeeee---cccCCCCCCCc-cchhe
Q 046488 327 RIGLDFSIGTGT--FAARMREFN-V-TLVSAIINLGAPFNEMIA--LRG----LVPLYIT---INQRVPFFDNT-LDLIH 392 (480)
Q Consensus 327 R~VLDVGCGtG~--fAa~Lae~g-V-~Vv~vd~d~~~~~~~~iA--~rg----lip~~~~---~ae~LPFpd~S-FDlV~ 392 (480)
+.++|+|.|.|. +++.+..++ . .++.++.+. ++..+.. .++ +-+.... .-..+|-.... ||+|+
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~--~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSR--AMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccch--HHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 468888877664 555555443 2 234444432 3433221 222 1112222 14567766544 99999
Q ss_pred ecccccCccChhcHHHHHHHHH-hcccCCcEEEEe
Q 046488 393 TTRFLDGWIDFVLLDFILYDWD-RVLRPGGLLWID 426 (480)
Q Consensus 393 ss~vL~h~~d~~~l~~~L~EI~-RVLKPGG~fiI~ 426 (480)
|++.+++.........+..+.. +..++||++++.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 9999999875543344555554 567899998875
No 319
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=47.06 E-value=1.7e+02 Score=28.92 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=47.9
Q ss_pred hcCCCCCCCCeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecc
Q 046488 318 VLDIKPGEIRIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~ 395 (480)
...+.+++ +||=.|+|. |..+..+++ +|+.++.++.+. ... ..+++-++...... +.. +.+.+|+++...
T Consensus 162 ~~~~~~~~--~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~--~~~-~~~~~~g~~~~~~~-~~~--~~~~vD~vi~~~ 233 (329)
T cd08298 162 LAGLKPGQ--RLGLYGFGASAHLALQIARYQGAEVFAFTRSG--EHQ-ELARELGADWAGDS-DDL--PPEPLDAAIIFA 233 (329)
T ss_pred hhCCCCCC--EEEEECCcHHHHHHHHHHHHCCCeEEEEcCCh--HHH-HHHHHhCCcEEecc-Ccc--CCCcccEEEEcC
Confidence 33455553 455566542 223333443 488877665432 222 22333223222221 111 345678766321
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
. . ...+.++.|.|+++|.+++.+
T Consensus 234 ~-----~----~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 234 P-----V----GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred C-----c----HHHHHHHHHHhhcCCEEEEEc
Confidence 1 1 237899999999999988753
No 320
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=46.54 E-value=1.6e+02 Score=29.77 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=49.8
Q ss_pred CCCCCCCCeEEEECCC-CcHHHHHHhhC-CCE-EEEEecCCChhHHHHHHHhCCCCeeeecc--------cCCCCCCCcc
Q 046488 320 DIKPGEIRIGLDFSIG-TGTFAARMREF-NVT-LVSAIINLGAPFNEMIALRGLVPLYITIN--------QRVPFFDNTL 388 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCG-tG~fAa~Lae~-gV~-Vv~vd~d~~~~~~~~iA~rglip~~~~~a--------e~LPFpd~SF 388 (480)
.+.+++ +||=.|+| .|..++.+++. |+. ++.++.+ +....++++-+....+... ..+. ....+
T Consensus 163 ~~~~g~--~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~-~~~~~ 236 (351)
T cd08285 163 NIKLGD--TVAVFGIGPVGLMAVAGARLRGAGRIIAVGSR---PNRVELAKEYGATDIVDYKNGDVVEQILKLT-GGKGV 236 (351)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHHHHcCCceEecCCCCCHHHHHHHHh-CCCCC
Confidence 345553 67777765 34455556654 774 5655533 2222333332222222111 0111 23457
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
|+|+-... . ...+.++.+.|+++|.++.....
T Consensus 237 d~vld~~g-----~----~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 237 DAVIIAGG-----G----QDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred cEEEECCC-----C----HHHHHHHHHHhhcCCEEEEeccc
Confidence 87774221 1 13689999999999998865443
No 321
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=45.88 E-value=16 Score=38.26 Aligned_cols=70 Identities=23% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEeCCCCC
Q 046488 406 LDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRPF 478 (480)
Q Consensus 406 l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qKP~~~~ 478 (480)
|+.+|..+..+|+|||+++|..|..-.+ ..++..++...-...+....+....+.... +..+-+||..++
T Consensus 220 L~~~L~~a~~~L~~gGrl~VISFHSLED--RiVK~~f~~~~~~~~~p~~lp~~~~~~~~~-~~~i~kk~i~ps 289 (310)
T PF01795_consen 220 LERGLEAAPDLLKPGGRLVVISFHSLED--RIVKQFFRELAKSCKCPPGLPVCECGKHPK-FKLITKKPITPS 289 (310)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEESSHHHH--HHHHHHHHCCSSC-------------------EESESS-B---
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecchhh--HHHHHHHHHhcccCCCcccccccccccccc-eEEccCCccCCC
No 322
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=45.83 E-value=1.9e+02 Score=31.91 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=70.1
Q ss_pred CCeEEEEC-CCCc------HHHHHHhhCCCEEEEEecCCChh-H---HHHHHHhCCCCeeeecccCCC----------CC
Q 046488 326 IRIGLDFS-IGTG------TFAARMREFNVTLVSAIINLGAP-F---NEMIALRGLVPLYITINQRVP----------FF 384 (480)
Q Consensus 326 iR~VLDVG-CGtG------~fAa~Lae~gV~Vv~vd~d~~~~-~---~~~iA~rglip~~~~~ae~LP----------Fp 384 (480)
..+||=+| =|+| -+|.+|.++|..+.-++.|.-.| + +.+.+.+-.++++....+.-| +.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH
Confidence 34677777 2444 46677777776654444442222 2 234566666777654323323 35
Q ss_pred CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
.+.||+|+...+=.|..+.. +-.=+.+|.++++|.=.+++.+-....+..+.-...-++++..
T Consensus 180 ~~~~DvvIvDTAGRl~ide~-Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~it 242 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEE-LMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGIT 242 (451)
T ss_pred HcCCCEEEEeCCCcccccHH-HHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCc
Confidence 67799999866555555544 3445788899999999988765333333333223344444544
No 323
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=45.58 E-value=1.5e+02 Score=29.87 Aligned_cols=22 Identities=9% Similarity=-0.121 Sum_probs=18.4
Q ss_pred HHHHHHHhcccCCcEEEEeecc
Q 046488 408 FILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 408 ~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
..+.+..+.|||||.+++.++.
T Consensus 241 ~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 241 QTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred HHHHHHHHHhhcCCEEEEEccC
Confidence 3788999999999999887644
No 324
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=43.98 E-value=1.2e+02 Score=32.87 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=48.4
Q ss_pred CeEEEECCCC-cHHHHHH-hhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChh
Q 046488 327 RIGLDFSIGT-GTFAARM-REFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFV 404 (480)
Q Consensus 327 R~VLDVGCGt-G~fAa~L-ae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~ 404 (480)
++|+=+|+|. |...+.+ +..|+.++.++.+. .....|.+-+.... ...+.+ ..+|+|+.... ..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~---~R~~~A~~~G~~~~-~~~e~v----~~aDVVI~atG-----~~- 268 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP---ICALQAAMEGYEVM-TMEEAV----KEGDIFVTTTG-----NK- 268 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh---hhHHHHHhcCCEEc-cHHHHH----cCCCEEEECCC-----CH-
Confidence 4899999996 5444444 34588877776552 22223333222211 111111 24688875321 11
Q ss_pred cHHHHHH-HHHhcccCCcEEEEeecc
Q 046488 405 LLDFILY-DWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 405 ~l~~~L~-EI~RVLKPGG~fiI~~f~ 429 (480)
.++. +..+.+||||.++..+.+
T Consensus 269 ---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 269 ---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 2444 458999999999877644
No 325
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=43.93 E-value=2e+02 Score=28.73 Aligned_cols=95 Identities=16% Similarity=0.134 Sum_probs=49.3
Q ss_pred cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCCE-EEEEecCCChhHHHHHHHhCCCCeeeecc----cC-CCC-CCCccc
Q 046488 319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNVT-LVSAIINLGAPFNEMIALRGLVPLYITIN----QR-VPF-FDNTLD 389 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~-Vv~vd~d~~~~~~~~iA~rglip~~~~~a----e~-LPF-pd~SFD 389 (480)
..+.++. +||-.|+|. |.++..+++ +|+. ++.++.+. .....+...+ ....+... +. ... ....||
T Consensus 155 ~~~~~~~--~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~--~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~d 229 (343)
T cd08236 155 AGITLGD--TVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDD--EKLAVARELG-ADDTINPKEEDVEKVRELTEGRGAD 229 (343)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHcC-CCEEecCccccHHHHHHHhCCCCCC
Confidence 3445553 688888654 555555655 4776 65554331 2222222222 22222110 00 011 223488
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+|+... .. ...+.++.+.|+++|.++...
T Consensus 230 ~vld~~-----g~----~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 230 LVIEAA-----GS----PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEEECC-----CC----HHHHHHHHHHhhcCCEEEEEc
Confidence 877431 11 236889999999999987654
No 326
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=43.72 E-value=34 Score=31.76 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=29.3
Q ss_pred hHHHhcCC--CCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488 314 LIPEVLDI--KPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIIN 356 (480)
Q Consensus 314 ~I~~vL~l--~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d 356 (480)
++..++.+ .+|+ .|||-=||+|+.+.+..+.|-..++++++
T Consensus 180 l~~~lI~~~t~~gd--iVlDpF~GSGTT~~aa~~l~R~~ig~E~~ 222 (231)
T PF01555_consen 180 LIERLIKASTNPGD--IVLDPFAGSGTTAVAAEELGRRYIGIEID 222 (231)
T ss_dssp HHHHHHHHHS-TT---EEEETT-TTTHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHhhhccce--eeehhhhccChHHHHHHHcCCeEEEEeCC
Confidence 44555542 3454 89999999999999998888888998876
No 327
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=42.59 E-value=34 Score=35.45 Aligned_cols=59 Identities=22% Similarity=0.380 Sum_probs=40.6
Q ss_pred CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee--ccC--ChhhH----HHHHHHHHHcCceee
Q 046488 384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS--FFC--AKEDM----NDYLEVFKMLKYKKH 450 (480)
Q Consensus 384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~--f~~--~~edL----~~~~~~l~~lGfkkl 450 (480)
..+-||+|+.+....|...+ |+.++++|||.+++-. |.- .++++ +++.++++..||+..
T Consensus 219 y~~~Fd~ifvs~s~vh~L~p--------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 219 YQNFFDLIFVSCSMVHFLKP--------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred hcCCCCEEEEhhhhHhhcch--------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 47889999977665554433 4788999999998863 211 23343 357789999998753
No 328
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=41.75 E-value=1.9e+02 Score=29.80 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=50.5
Q ss_pred cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeeccc-CCC-------CCCCc
Q 046488 319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITINQ-RVP-------FFDNT 387 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae-~LP-------Fpd~S 387 (480)
..+.+++ +||=.|+|. |.++..+++ .|+ .++.++.+ +...+.+++-+....+...+ .-+ ...+.
T Consensus 181 ~~~~~g~--~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~---~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 181 AKVEEGD--TVAVFGLGGIGLSVIQGARMAKASRIIAIDIN---PAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC---HHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCC
Confidence 3455554 788788753 555666665 477 57766543 22333333323322221110 000 01124
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEeecc
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDSFF 429 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~f~ 429 (480)
+|+|+-.- .. ...+.+..+.||+| |.+++....
T Consensus 256 ~d~vid~~-----G~----~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 256 VDYSFECI-----GN----VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred CCEEEECC-----CC----HHHHHHHHHHhhcCCCeEEEEecc
Confidence 67666321 11 23688889999997 998876543
No 329
>PLN02740 Alcohol dehydrogenase-like
Probab=41.56 E-value=1.6e+02 Score=30.46 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=50.4
Q ss_pred cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeecc-------cCC-CCCCCc
Q 046488 319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITIN-------QRV-PFFDNT 387 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~a-------e~L-PFpd~S 387 (480)
..+.+++ +||=+|+|. |..+..+++ +|+ .++.++.+ +...+.+++-+....+... +.+ ....+.
T Consensus 194 ~~~~~g~--~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~---~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g 268 (381)
T PLN02740 194 ANVQAGS--SVAIFGLGAVGLAVAEGARARGASKIIGVDIN---PEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGG 268 (381)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC---hHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCC
Confidence 3455554 788888753 445555555 477 47666543 2223333332232222110 000 011225
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEeecc
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDSFF 429 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~f~ 429 (480)
||+|+-.-. . ...+.+..+.+++| |.+++....
T Consensus 269 ~dvvid~~G-----~----~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 269 VDYSFECAG-----N----VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred CCEEEECCC-----C----hHHHHHHHHhhhcCCCEEEEEccC
Confidence 787764221 1 23678888899997 998876543
No 330
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=41.55 E-value=1.4e+02 Score=29.94 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=44.2
Q ss_pred eEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeec-ccCCC-----CCCCccchheeccccc
Q 046488 328 IGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITI-NQRVP-----FFDNTLDLIHTTRFLD 398 (480)
Q Consensus 328 ~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae~LP-----Fpd~SFDlV~ss~vL~ 398 (480)
+||-.|+|. |..+..+++. |. .++.++- . +....++.+-+...++.. ...++ ...+.+|+|+....
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~--~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g-- 240 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAGASLVIASDP--N-PYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSG-- 240 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECC--C-HHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCC--
Confidence 566677643 4555556553 77 4555532 2 222223232222222111 11110 12345777774221
Q ss_pred CccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 399 GWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
. ...+.++.+.|+|+|.++...
T Consensus 241 ---~----~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 241 ---N----PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred ---C----HHHHHHHHHHhccCCEEEEEc
Confidence 1 236889999999999988653
No 331
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=41.12 E-value=1.9e+02 Score=29.09 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=24.4
Q ss_pred CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
.+.||+|+-... . ...+.++.+.|+++|.++....
T Consensus 228 ~~~~d~vld~~g-----~----~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 228 GEGVDVFLEMSG-----A----PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCCCCEEEECCC-----C----HHHHHHHHHhhcCCCEEEEEcc
Confidence 456888874311 1 2368899999999999887543
No 332
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=40.50 E-value=2.7e+02 Score=27.47 Aligned_cols=92 Identities=17% Similarity=0.074 Sum_probs=47.6
Q ss_pred cCCCCCCCCeEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheeccc
Q 046488 319 LDIKPGEIRIGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRF 396 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~v 396 (480)
..+.++. +||=.|+| .|..+..+++ +|+.++.++.+ .... ..+++-+........ . ....+.+|+++-..
T Consensus 151 ~~~~~g~--~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~--~~~~-~~~~~~g~~~~~~~~-~-~~~~~~~d~vid~~- 222 (319)
T cd08242 151 VPITPGD--KVAVLGDGKLGLLIAQVLALTGPDVVLVGRH--SEKL-ALARRLGVETVLPDE-A-ESEGGGFDVVVEAT- 222 (319)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCeEEEEcCC--HHHH-HHHHHcCCcEEeCcc-c-cccCCCCCEEEECC-
Confidence 3455553 67777653 2233333343 48887666533 2222 233332222222211 1 13445688887421
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
.. ...+..+.+.|+++|.+++.
T Consensus 223 ----g~----~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 223 ----GS----PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----CC----hHHHHHHHHHhhcCCEEEEE
Confidence 11 23678888999999998864
No 333
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=39.99 E-value=2.2e+02 Score=29.22 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=48.2
Q ss_pred CCCCCCCCeEEEECCC-CcHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeeccc-------CC-CCCCCcc
Q 046488 320 DIKPGEIRIGLDFSIG-TGTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITINQ-------RV-PFFDNTL 388 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae-------~L-PFpd~SF 388 (480)
.+.+++ +||=+|+| .|..++.+++ .|+ .++.++.+ +.....+++-++..++...+ .+ ....+.+
T Consensus 181 ~~~~g~--~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~---~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 181 KVEPGS--TVAVFGLGAVGLSAIMGAKIAGASRIIGVDIN---EDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCC
Confidence 455554 67777764 2445555555 487 56666543 22333333322221111100 00 0112357
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCC-cEEEEeec
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDSF 428 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~f 428 (480)
|+|+-.. .. ...+.+..+.|+|| |.+++...
T Consensus 256 d~vid~~-----g~----~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 256 DYSFECT-----GN----ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CEEEECC-----CC----hHHHHHHHHhcccCCCEEEEEcC
Confidence 8777321 11 13688899999986 99887643
No 334
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=39.90 E-value=2.5e+02 Score=27.20 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=50.4
Q ss_pred CCCCCCCCeEEEECC--CCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeec-------ccCCCCCCCccc
Q 046488 320 DIKPGEIRIGLDFSI--GTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITI-------NQRVPFFDNTLD 389 (480)
Q Consensus 320 ~l~~g~iR~VLDVGC--GtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-------ae~LPFpd~SFD 389 (480)
.+..++ +||=.|+ +.|..+..+++. |+.++.++.+. ... ..+.+-++...... ..++ .+.+|
T Consensus 139 ~~~~g~--~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~--~~~-~~~~~~g~~~~~~~~~~~~~~i~~~---~~~~d 210 (320)
T cd08243 139 GLQPGD--TLLIRGGTSSVGLAALKLAKALGATVTATTRSP--ERA-ALLKELGADEVVIDDGAIAEQLRAA---PGGFD 210 (320)
T ss_pred CCCCCC--EEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCH--HHH-HHHHhcCCcEEEecCccHHHHHHHh---CCCce
Confidence 344453 6777775 466677667664 88877665432 222 22232222222211 1112 45688
Q ss_pred hheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+++.... ...+.++.+.|+++|.++..+
T Consensus 211 ~vl~~~~----------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 211 KVLELVG----------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred EEEECCC----------hHHHHHHHHHhccCCEEEEEc
Confidence 7774211 126888999999999988654
No 335
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=39.56 E-value=2.5e+02 Score=27.97 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=49.3
Q ss_pred CCCCCCCCeEEEECC--CCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccC----C-CCCCCccchh
Q 046488 320 DIKPGEIRIGLDFSI--GTGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQR----V-PFFDNTLDLI 391 (480)
Q Consensus 320 ~l~~g~iR~VLDVGC--GtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~----L-PFpd~SFDlV 391 (480)
.+.++. +||=.|+ +.|..+..+++ .|+.++.++.+ . ....+++-++..+...... . -.....+|+|
T Consensus 174 ~~~~g~--~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08274 174 GVGAGE--TVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVV 247 (350)
T ss_pred CCCCCC--EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEE
Confidence 455554 7888887 44556555555 48887766532 2 2223333223222111110 0 1134568887
Q ss_pred eecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
+.... ...+.++.+.|+++|.++..
T Consensus 248 i~~~g----------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 248 ADVVG----------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred EecCC----------HHHHHHHHHHhccCCEEEEe
Confidence 74221 12578889999999998754
No 336
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=38.27 E-value=29 Score=36.18 Aligned_cols=30 Identities=33% Similarity=0.309 Sum_probs=25.2
Q ss_pred hcHHHHHHHHHhcccCCcEEEEeeccCChh
Q 046488 404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKE 433 (480)
Q Consensus 404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e 433 (480)
..++.+|..+..+|+|||+++|..|..-.+
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 456789999999999999999988875544
No 337
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=36.12 E-value=3.3e+02 Score=27.55 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=16.2
Q ss_pred HHHHHHhcccCCcEEEEee
Q 046488 409 ILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 409 ~L~EI~RVLKPGG~fiI~~ 427 (480)
.+.+..+.|+++|.++...
T Consensus 262 ~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 262 AVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred HHHHHHHHhccCCEEEEEc
Confidence 6788899999999988653
No 338
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=36.00 E-value=2.1e+02 Score=29.25 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=23.4
Q ss_pred CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+..||+|+... ... ..+.++.+.|+++|.++...
T Consensus 254 ~~~~d~vld~v-----g~~----~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 254 GRGVDVVVEAL-----GKP----ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCEEEEeC-----CCH----HHHHHHHHHHhcCCEEEEEc
Confidence 45688887421 111 26788999999999988653
No 339
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.47 E-value=1.3e+02 Score=25.33 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=50.1
Q ss_pred CCCcHHHHHHhh----CCCEEEEEecCCChhHHHHHHHhCCCCeeeeccc------CCCCCCCccchheecccccCccCh
Q 046488 334 IGTGTFAARMRE----FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQ------RVPFFDNTLDLIHTTRFLDGWIDF 403 (480)
Q Consensus 334 CGtG~fAa~Lae----~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae------~LPFpd~SFDlV~ss~vL~h~~d~ 403 (480)
||.|.++..+++ .+..++.++.+. ...+++..+ ++.++.++.. +... +..|.|++.. .++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~--~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~-----~~d 73 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDP--ERVEELREE-GVEVIYGDATDPEVLERAGI--EKADAVVILT-----DDD 73 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHT-TSEEEES-TTSHHHHHHTTG--GCESEEEEES-----SSH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCc--HHHHHHHhc-ccccccccchhhhHHhhcCc--cccCEEEEcc-----CCH
Confidence 566677666554 365777776552 233333334 4666666522 2222 3566555432 122
Q ss_pred hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
. .-..+....|-+-|...++.... . ....+.++.+|..
T Consensus 74 ~-~n~~~~~~~r~~~~~~~ii~~~~---~---~~~~~~l~~~g~d 111 (116)
T PF02254_consen 74 E-ENLLIALLARELNPDIRIIARVN---D---PENAELLRQAGAD 111 (116)
T ss_dssp H-HHHHHHHHHHHHTTTSEEEEEES---S---HHHHHHHHHTT-S
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEEC---C---HHHHHHHHHCCcC
Confidence 2 23456677777888888766321 1 2234566666654
No 340
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=33.90 E-value=2.3e+02 Score=29.02 Aligned_cols=92 Identities=17% Similarity=0.088 Sum_probs=48.3
Q ss_pred CCCCCCCCeEEEECCCC-cHHHHHHhh-CCCE-EEEEecCCChhHHHHHHHhCCCCeeeec--------ccCCCCCCCcc
Q 046488 320 DIKPGEIRIGLDFSIGT-GTFAARMRE-FNVT-LVSAIINLGAPFNEMIALRGLVPLYITI--------NQRVPFFDNTL 388 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~-Vv~vd~d~~~~~~~~iA~rglip~~~~~--------ae~LPFpd~SF 388 (480)
.+.++. +||=.|+|. |..+..+++ .|+. ++.++.+ +....++.+-+...++.. ...+. .+.+
T Consensus 183 ~~~~g~--~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~---~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~--~~~~ 255 (365)
T cd08278 183 KPRPGS--SIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIV---DSRLELAKELGATHVINPKEEDLVAAIREIT--GGGV 255 (365)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHHHHcCCcEEecCCCcCHHHHHHHHh--CCCC
Confidence 345553 677777643 455555655 3774 5555533 222233333222222211 01111 3457
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+|+-... . ...+.++.+.|+++|.++..+
T Consensus 256 d~vld~~g-----~----~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 256 DYALDTTG-----V----PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred cEEEECCC-----C----cHHHHHHHHHhccCCEEEEeC
Confidence 77773211 1 136889999999999988754
No 341
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=33.75 E-value=2.8e+02 Score=28.26 Aligned_cols=93 Identities=12% Similarity=0.006 Sum_probs=47.9
Q ss_pred CCCCCCCCeEEEECCC-CcHHHHHHhh-CCCE-EEEEecCCChhHHHHHHHhCCCCeeeec-----cc---CCCCCCCcc
Q 046488 320 DIKPGEIRIGLDFSIG-TGTFAARMRE-FNVT-LVSAIINLGAPFNEMIALRGLVPLYITI-----NQ---RVPFFDNTL 388 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~-Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae---~LPFpd~SF 388 (480)
.+.++. +||-.|+| .|..+..+++ .|+. ++.++.+. ....++.+-++...+.. .+ ++ .+.+.+
T Consensus 179 ~~~~g~--~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~---~~~~~~~~~g~~~vv~~~~~~~~~~l~~~-~~~~~v 252 (363)
T cd08279 179 RVRPGD--TVAVIGCGGVGLNAIQGARIAGASRIIAVDPVP---EKLELARRFGATHTVNASEDDAVEAVRDL-TDGRGA 252 (363)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH---HHHHHHHHhCCeEEeCCCCccHHHHHHHH-cCCCCC
Confidence 344453 67777764 3555555555 4775 65554332 22222222222222211 01 11 124568
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+++.... . ...+.++.|.|+++|+++..+
T Consensus 253 d~vld~~~-----~----~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 253 DYAFEAVG-----R----AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CEEEEcCC-----C----hHHHHHHHHHhhcCCeEEEEe
Confidence 87764221 1 136889999999999988653
No 342
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=33.40 E-value=44 Score=35.08 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=25.9
Q ss_pred hcHHHHHHHHHhcccCCcEEEEeeccCChhh
Q 046488 404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKED 434 (480)
Q Consensus 404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~ed 434 (480)
..++.+|..+.++|+|||+++|..|..-.+-
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDR 251 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLEDR 251 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHHH
Confidence 4567899999999999999999988766543
No 343
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=32.50 E-value=4.4e+02 Score=25.26 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=47.7
Q ss_pred CCCCCCCCeEEEECC--CCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc--------cCCCCCCCcc
Q 046488 320 DIKPGEIRIGLDFSI--GTGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN--------QRVPFFDNTL 388 (480)
Q Consensus 320 ~l~~g~iR~VLDVGC--GtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a--------e~LPFpd~SF 388 (480)
.+.++ .+||-.|| +.|..++.++. .|+.++.++.+. .....+...+ ........ ..+ .....+
T Consensus 136 ~~~~~--~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~--~~~~~~~~~g-~~~~~~~~~~~~~~~i~~~-~~~~~~ 209 (323)
T cd08241 136 RLQPG--ETVLVLGAAGGVGLAAVQLAKALGARVIAAASSE--EKLALARALG-ADHVIDYRDPDLRERVKAL-TGGRGV 209 (323)
T ss_pred CCCCC--CEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCH--HHHHHHHHcC-CceeeecCCccHHHHHHHH-cCCCCc
Confidence 34444 47999998 34445555554 488877765432 2222222222 22221110 111 123457
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+++.... ...+.++.+.++++|.++...
T Consensus 210 d~v~~~~g----------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 210 DVVYDPVG----------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred EEEEECcc----------HHHHHHHHHhhccCCEEEEEc
Confidence 77764221 124667788999999987654
No 344
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=32.42 E-value=37 Score=35.17 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=27.7
Q ss_pred ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
.||+|.++-.+....... ..+..+..+.+++.|.+++.
T Consensus 196 ~ydlIlsSetiy~~~~~~--~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLA--VLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred chhhhhhhhhhhCcchhh--hhHhhhhhhcCCccchhhhh
Confidence 789999887776554433 12267888899999998875
No 345
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=32.19 E-value=3.5e+02 Score=27.75 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=49.7
Q ss_pred cCCCCCCCCeEEEECCC-CcHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeeccc-------CC-CCCCCc
Q 046488 319 LDIKPGEIRIGLDFSIG-TGTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITINQ-------RV-PFFDNT 387 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae-------~L-PFpd~S 387 (480)
..+++++ +||=.|+| .|.++..+++ .|+ .++.++.+. .....+++-+....+...+ .+ ...++.
T Consensus 182 ~~~~~g~--~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~---~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 182 AKVEPGS--TVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP---DKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH---HHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCC
Confidence 3455554 67777764 3445555555 477 576665442 2223333322222221100 00 011235
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEeecc
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDSFF 429 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~f~ 429 (480)
+|+|+-.. ... ..+.+..+.|||| |.+++....
T Consensus 257 ~d~vid~~-----g~~----~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 257 VDYTFECI-----GNV----KVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred CcEEEECC-----CCh----HHHHHHHHhhccCCCeEEEEccC
Confidence 77776321 111 3688889999997 998876644
No 346
>PRK11524 putative methyltransferase; Provisional
Probab=31.71 E-value=72 Score=32.22 Aligned_cols=44 Identities=20% Similarity=0.113 Sum_probs=32.6
Q ss_pred hhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488 313 FLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIIN 356 (480)
Q Consensus 313 ~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d 356 (480)
.++..++.+...+...|||-=||+|+.+.+..+.|-..++++++
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~ 239 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEIN 239 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCC
Confidence 35556555432223489999999999998888888888898876
No 347
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=31.29 E-value=1.8e+02 Score=29.13 Aligned_cols=82 Identities=20% Similarity=0.062 Sum_probs=45.2
Q ss_pred EEEECCCC--cHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcH
Q 046488 329 GLDFSIGT--GTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLL 406 (480)
Q Consensus 329 VLDVGCGt--G~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l 406 (480)
|.=||+|. |.++..|++.|..+..++.+ ..........|.+.......+ .-...|+|+.+- + ....
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~--~~~~~~a~~~g~~~~~~~~~~----~~~~aDlVilav-----p-~~~~ 70 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRR--ESTCERAIERGLVDEASTDLS----LLKDCDLVILAL-----P-IGLL 70 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHCCCcccccCCHh----HhcCCCEEEEcC-----C-HHHH
Confidence 55578774 56788888888888877754 233334444443321111111 113457776432 2 2223
Q ss_pred HHHHHHHHhcccCCcE
Q 046488 407 DFILYDWDRVLRPGGL 422 (480)
Q Consensus 407 ~~~L~EI~RVLKPGG~ 422 (480)
..++.++...++|+-.
T Consensus 71 ~~~~~~l~~~l~~~~i 86 (279)
T PRK07417 71 LPPSEQLIPALPPEAI 86 (279)
T ss_pred HHHHHHHHHhCCCCcE
Confidence 4577888888887754
No 348
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=31.27 E-value=1.4e+02 Score=33.87 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=62.0
Q ss_pred CCeEEEECCCCcHHHHH------HhhCCCEEEEEecCCChh-HHHHHH---HhCCCCeeeecccCCCCCCCccchheecc
Q 046488 326 IRIGLDFSIGTGTFAAR------MREFNVTLVSAIINLGAP-FNEMIA---LRGLVPLYITINQRVPFFDNTLDLIHTTR 395 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~------Lae~gV~Vv~vd~d~~~~-~~~~iA---~rglip~~~~~ae~LPFpd~SFDlV~ss~ 395 (480)
..+|+=+|+|-|-++.+ ...+.|.++.+.-+..+- ++.... -.+.+.++.++...++-|+...|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 45789999999986533 333567777766443221 111111 1233455556677787556899999963
Q ss_pred cccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
.|-.+.|.+.=...|.-+-+.|||.|..|=.
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 3333444333245899999999999987644
No 349
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=31.21 E-value=2.7e+02 Score=26.51 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=56.1
Q ss_pred EEEECCCC-c-HHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeee---------c-ccCCCCCCC------ccch
Q 046488 329 GLDFSIGT-G-TFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYIT---------I-NQRVPFFDN------TLDL 390 (480)
Q Consensus 329 VLDVGCGt-G-~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~---------~-ae~LPFpd~------SFDl 390 (480)
|-=+|.|. | ..|+.|++.|..|+++|.+. .....-.+|..++... . ..+|-+.++ ..|+
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~---~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE---EKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H---HHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh---HHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence 44467775 3 35778888999999999762 2222223343333210 0 122222221 2333
Q ss_pred heec-cc-c--cCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcC
Q 046488 391 IHTT-RF-L--DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLK 446 (480)
Q Consensus 391 V~ss-~v-L--~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lG 446 (480)
++.. -. . ..-.|...+..++.++.++|++|-.+++-.-......-+.+.+++++.+
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 3311 00 0 0111233457899999999999888777544433333334556776644
No 350
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=30.49 E-value=52 Score=35.45 Aligned_cols=96 Identities=11% Similarity=-0.057 Sum_probs=55.2
Q ss_pred CeEEEECCCCcHHHHHHhhCCC-----------------------------------------EEEEEecCCChhHHHHH
Q 046488 327 RIGLDFSIGTGTFAARMREFNV-----------------------------------------TLVSAIINLGAPFNEMI 365 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV-----------------------------------------~Vv~vd~d~~~~~~~~i 365 (480)
..++|==||+|++++..+-.+. ..++.|.|. . ..+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~--r-~i~~ 269 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP--R-HIEG 269 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH--H-HHHH
Confidence 5799999999999876655432 144666552 2 2222
Q ss_pred HH-----hCC---CCeeeecccCCCCCCCccchheecc--cccCccChhcHHH----HHHHHHhcccCCcEEEEe
Q 046488 366 AL-----RGL---VPLYITINQRVPFFDNTLDLIHTTR--FLDGWIDFVLLDF----ILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 366 A~-----rgl---ip~~~~~ae~LPFpd~SFDlV~ss~--vL~h~~d~~~l~~----~L~EI~RVLKPGG~fiI~ 426 (480)
|+ .|. |.+...++..|+-+-+.+|+|+|+= ... +.+...++. +..++.|+++--++++++
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 22 222 3445566777765448999999862 111 122222232 334555666767777775
No 351
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=30.05 E-value=2.2e+02 Score=28.93 Aligned_cols=109 Identities=10% Similarity=-0.015 Sum_probs=53.0
Q ss_pred EEEECCCC--cHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcH
Q 046488 329 GLDFSIGT--GTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLL 406 (480)
Q Consensus 329 VLDVGCGt--G~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l 406 (480)
|-=||+|. +.++..|++.|..++..+.+ ....+.++..+.... ...+.+--.-..-|+|+.. .++. .+
T Consensus 3 Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~--~~~~~~l~~~g~~~~--~s~~~~~~~~~~~dvIi~~-----vp~~-~~ 72 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKRGHDCVGYDHD--QDAVKAMKEDRTTGV--ANLRELSQRLSAPRVVWVM-----VPHG-IV 72 (298)
T ss_pred EEEEcchHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHcCCccc--CCHHHHHhhcCCCCEEEEE-----cCch-HH
Confidence 44467775 23667777778887766544 233344444442221 1111110001234666642 2232 34
Q ss_pred HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488 407 DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK 448 (480)
Q Consensus 407 ~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk 448 (480)
..++.++...|+||-. +|+.-.....+..+....++..|..
T Consensus 73 ~~v~~~l~~~l~~g~i-vid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 73 DAVLEELAPTLEKGDI-VIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred HHHHHHHHhhCCCCCE-EEECCCCCcccHHHHHHHHHhcCCe
Confidence 6688899999988854 4542222222223333445555543
No 352
>PRK13699 putative methylase; Provisional
Probab=29.94 E-value=95 Score=30.63 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=31.0
Q ss_pred hHHHhcCC--CCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488 314 LIPEVLDI--KPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIIN 356 (480)
Q Consensus 314 ~I~~vL~l--~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d 356 (480)
++..++.. .+|+ .|||-=||+|+.+.+..+.|-..++++++
T Consensus 152 l~~~~i~~~s~~g~--~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~ 194 (227)
T PRK13699 152 SLQPLIESFTHPNA--IVLDPFAGSGSTCVAALQSGRRYIGIELL 194 (227)
T ss_pred HHHHHHHHhCCCCC--EEEeCCCCCCHHHHHHHHcCCCEEEEecC
Confidence 44444432 3444 89999999999998888888888888876
No 353
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=29.94 E-value=1.5e+02 Score=26.78 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=33.9
Q ss_pred CccchheecccccCccChhc-HHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488 386 NTLDLIHTTRFLDGWIDFVL-LDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 386 ~SFDlV~ss~vL~h~~d~~~-l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl 450 (480)
..||+|+-.. +..-.+++. -..++.++.|.++|||.+.- |. .. ..+...+...||.-.
T Consensus 49 ~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~T--ys-~a---~~Vr~~L~~aGF~v~ 107 (124)
T PF05430_consen 49 ARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLAT--YS-SA---GAVRRALQQAGFEVE 107 (124)
T ss_dssp T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEE--S---B---HHHHHHHHHCTEEEE
T ss_pred ccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEE--ee-ch---HHHHHHHHHcCCEEE
Confidence 6677777532 322222210 03489999999999998654 22 22 235568889999843
No 354
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=29.93 E-value=6e+02 Score=25.71 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=66.0
Q ss_pred eEEEECCCCcHHHHHHhhCCC--EEEEEecCCCh--hHHHHHHHhCCCCeeeec-ccCC-CCC-CCccchheecccccCc
Q 046488 328 IGLDFSIGTGTFAARMREFNV--TLVSAIINLGA--PFNEMIALRGLVPLYITI-NQRV-PFF-DNTLDLIHTTRFLDGW 400 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~~--~~~~~iA~rglip~~~~~-ae~L-PFp-d~SFDlV~ss~vL~h~ 400 (480)
++.||||=-|.++.+|.+.+. .+++.+++.++ .+..++.+.++.+..... ..-| ++. +..+|.|+.+.+=-
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG-- 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG-- 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH--
Confidence 499999999999999998754 45555555432 223345555554433211 2223 343 34799888655321
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl 450 (480)
..+..+|.|-..-|+-=-++++ +++.....+.+.+...+|.-.
T Consensus 97 ---~lI~~ILee~~~~l~~~~rlIL----QPn~~~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 97 ---TLIREILEEGKEKLKGVERLIL----QPNIHTYELREWLSANSYEIK 139 (226)
T ss_pred ---HHHHHHHHHhhhhhcCcceEEE----CCCCCHHHHHHHHHhCCceee
Confidence 1224467777777775445665 233333445566777676543
No 355
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=29.81 E-value=2.1e+02 Score=29.41 Aligned_cols=89 Identities=15% Similarity=0.052 Sum_probs=43.5
Q ss_pred eEEEECCC-CcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeeccc--CCCCCCCccchheecccccCccCh
Q 046488 328 IGLDFSIG-TGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQ--RVPFFDNTLDLIHTTRFLDGWIDF 403 (480)
Q Consensus 328 ~VLDVGCG-tG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae--~LPFpd~SFDlV~ss~vL~h~~d~ 403 (480)
+||=.|+| .|.++..+++. |+.++.++.+. .....++++-+....+...+ .+.-..+.+|+|+-.. ..
T Consensus 183 ~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~--~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~-----g~- 254 (357)
T PLN02514 183 RGGILGLGGVGHMGVKIAKAMGHHVTVISSSD--KKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV-----PV- 254 (357)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC-----Cc-
Confidence 56666654 35555666654 87776655331 22222322222222111100 0000012366665321 11
Q ss_pred hcHHHHHHHHHhcccCCcEEEEee
Q 046488 404 VLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 404 ~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
...+.+..+.||+||+++...
T Consensus 255 ---~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 255 ---FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ---hHHHHHHHHHhccCCEEEEEC
Confidence 136788889999999988754
No 356
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=29.58 E-value=1.8e+02 Score=30.39 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=45.4
Q ss_pred eEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec-----ccCCCCCCCccchheecccccCc
Q 046488 328 IGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI-----NQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 328 ~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
+||=.|+| .|.++..+++ .|+.++.++.+. +....++++-+....+.. ...+. +.+|+|+-..
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~--~~~~~~a~~lGa~~~i~~~~~~~v~~~~---~~~D~vid~~----- 250 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS--EKEREAIDRLGADSFLVTTDSQKMKEAV---GTMDFIIDTV----- 250 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh--HHhHHHHHhCCCcEEEcCcCHHHHHHhh---CCCcEEEECC-----
Confidence 67777775 3455556665 488777665432 222233333222222211 01111 1367666321
Q ss_pred cChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 401 IDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
.. ...+.+..+.||+||.++...
T Consensus 251 G~----~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 SA----EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred Cc----HHHHHHHHHhhcCCCEEEEEc
Confidence 11 136788899999999988754
No 357
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=29.21 E-value=58 Score=35.46 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=26.7
Q ss_pred CCCeEEEECCCCcHHHHHHhh-CCCEEEEEecC
Q 046488 325 EIRIGLDFSIGTGTFAARMRE-FNVTLVSAIIN 356 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae-~gV~Vv~vd~d 356 (480)
.+..|.|+|.|.|.++..|.= .|..|++++-+
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 366899999999999999875 48888888754
No 358
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.20 E-value=7.9e+02 Score=26.87 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=36.5
Q ss_pred CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488 385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW 452 (480)
Q Consensus 385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W 452 (480)
.+.+|+|+....-.+..+.. +-.-+.++.++++|.+.+++.+-....+.++....+.+.++...+-|
T Consensus 180 ~~~~DvVIIDTaGr~~~d~~-l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIl 246 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQIDEE-LMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVL 246 (428)
T ss_pred hcCCCEEEEeCCCccccCHH-HHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEE
Confidence 45688888644432223332 24467778889999999777653322222333333334555444433
No 359
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=28.99 E-value=1.5e+02 Score=29.30 Aligned_cols=42 Identities=26% Similarity=0.390 Sum_probs=30.5
Q ss_pred HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 407 DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 407 ~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
...+.|+.|||+++|.+++...+ .....+..+++.+||.-..
T Consensus 79 ~~~~~~~~rvl~~~~~~~v~~~~---~~~~~~~~~~~~~gf~~~~ 120 (302)
T COG0863 79 LQWLAEQKRVLKPGGSLYVIDPF---SNLARIEDIAKKLGFEILG 120 (302)
T ss_pred HHHHHHhhheecCCCEEEEECCc---hhhhHHHHHHHhCCCeEee
Confidence 45899999999999999987544 2233455667778987543
No 360
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=28.93 E-value=2.6e+02 Score=27.40 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=50.0
Q ss_pred cCCCCCCCCeEEEECC--CCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeec--------ccCCCCCCCc
Q 046488 319 LDIKPGEIRIGLDFSI--GTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITI--------NQRVPFFDNT 387 (480)
Q Consensus 319 L~l~~g~iR~VLDVGC--GtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~--------ae~LPFpd~S 387 (480)
..+.+++ +||=.|+ +.|..+..+++. |+.++.+.-+. .....++..| +...... ..++ .....
T Consensus 135 ~~~~~g~--~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~--~~~~~~~~~g-~~~~~~~~~~~~~~~i~~~-~~~~~ 208 (324)
T cd08292 135 LGVKPGQ--WLIQNAAGGAVGKLVAMLAAARGINVINLVRRD--AGVAELRALG-IGPVVSTEQPGWQDKVREA-AGGAP 208 (324)
T ss_pred hCCCCCC--EEEEcccccHHHHHHHHHHHHCCCeEEEEecCH--HHHHHHHhcC-CCEEEcCCCchHHHHHHHH-hCCCC
Confidence 3455554 6777765 356677767664 88876664321 2223333333 2222211 0111 12345
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+|+|+... ... .+.+..+.|+++|.++...
T Consensus 209 ~d~v~d~~-----g~~-----~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 209 ISVALDSV-----GGK-----LAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred CcEEEECC-----CCh-----hHHHHHHhhcCCcEEEEEe
Confidence 88877421 111 4678899999999988653
No 361
>PRK10083 putative oxidoreductase; Provisional
Probab=28.07 E-value=3.7e+02 Score=26.80 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.6
Q ss_pred HHHHHHhcccCCcEEEEee
Q 046488 409 ILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 409 ~L~EI~RVLKPGG~fiI~~ 427 (480)
.+.+..+.|+++|.++..+
T Consensus 241 ~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 241 ILEEAVTLASPAARIVLMG 259 (339)
T ss_pred HHHHHHHHhhcCCEEEEEc
Confidence 6899999999999988754
No 362
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=27.86 E-value=86 Score=33.10 Aligned_cols=99 Identities=17% Similarity=0.079 Sum_probs=55.5
Q ss_pred CCCeEEEECCCCcHHHHHHhhC----CCEEEEEecCC---ChhHHHHHHHh---CCCCeeeec----ccCCCCCCCccch
Q 046488 325 EIRIGLDFSIGTGTFAARMREF----NVTLVSAIINL---GAPFNEMIALR---GLVPLYITI----NQRVPFFDNTLDL 390 (480)
Q Consensus 325 ~iR~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~---~~~~~~~iA~r---glip~~~~~----ae~LPFpd~SFDl 390 (480)
+.++||=||.|-|.+....+.+ ++....++-+. +..+...++.. ..+....++ .+.+ ..+.||+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~--~~~~~dV 198 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL--KENPFDV 198 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh--ccCCceE
Confidence 4578999999999998877766 22222322111 01111122211 112334444 3333 3789999
Q ss_pred heecccccCccChh--cHHHHHHHHHhcccCCcEEEEe
Q 046488 391 IHTTRFLDGWIDFV--LLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 391 V~ss~vL~h~~d~~--~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
|+.-.. ....+.+ -...++..+.+.|||||+++..
T Consensus 199 ii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 199 IITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 986322 1222221 1245788899999999998875
No 363
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=26.88 E-value=2e+02 Score=26.38 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=55.3
Q ss_pred EEEECCCCc--HHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcH
Q 046488 329 GLDFSIGTG--TFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLL 406 (480)
Q Consensus 329 VLDVGCGtG--~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l 406 (480)
|-=||+|.= .++..|++.|..+...+.+ ......+...+. ... .....+ -...|+|++. +++...+
T Consensus 4 Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~--~~~~~~~~~~g~-~~~-~s~~e~---~~~~dvvi~~-----v~~~~~v 71 (163)
T PF03446_consen 4 IGFIGLGNMGSAMARNLAKAGYEVTVYDRS--PEKAEALAEAGA-EVA-DSPAEA---AEQADVVILC-----VPDDDAV 71 (163)
T ss_dssp EEEE--SHHHHHHHHHHHHTTTEEEEEESS--HHHHHHHHHTTE-EEE-SSHHHH---HHHBSEEEE------SSSHHHH
T ss_pred EEEEchHHHHHHHHHHHHhcCCeEEeeccc--hhhhhhhHHhhh-hhh-hhhhhH---hhcccceEee-----cccchhh
Confidence 444666542 2556667778888777644 234444444441 111 111111 1122666642 3344445
Q ss_pred HHHHHH--HHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488 407 DFILYD--WDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451 (480)
Q Consensus 407 ~~~L~E--I~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~ 451 (480)
..++.+ +...|++|-.++-. -....+...++.+.++..|..-+.
T Consensus 72 ~~v~~~~~i~~~l~~g~iiid~-sT~~p~~~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 72 EAVLFGENILAGLRPGKIIIDM-STISPETSRELAERLAAKGVRYVD 117 (163)
T ss_dssp HHHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhhhhHHhhccccceEEEec-CCcchhhhhhhhhhhhhccceeee
Confidence 667777 78888887775532 223344455667777777765443
No 364
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=26.53 E-value=4.8e+02 Score=26.63 Aligned_cols=97 Identities=13% Similarity=0.052 Sum_probs=48.7
Q ss_pred cCCCCCCCCeEEEECCC-CcHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeeccc---CC-----CCCCCc
Q 046488 319 LDIKPGEIRIGLDFSIG-TGTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITINQ---RV-----PFFDNT 387 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae---~L-----PFpd~S 387 (480)
..+.+++ +||=.|+| .|.++..+++ .|+ .++.++.+. .....+++-+....+...+ .+ ....+.
T Consensus 183 ~~~~~g~--~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~---~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~ 257 (369)
T cd08301 183 AKVKKGS--TVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP---SKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGG 257 (369)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH---HHHHHHHHcCCceEEcccccchhHHHHHHHHhCCC
Confidence 3455554 67777764 2344555555 377 576665432 2223333322222221110 00 011224
Q ss_pred cchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEeecc
Q 046488 388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDSFF 429 (480)
Q Consensus 388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~f~ 429 (480)
+|+|+-.. .. ...+.+..+.+++| |.+++....
T Consensus 258 ~d~vid~~-----G~----~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 258 VDYSFECT-----GN----IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred CCEEEECC-----CC----hHHHHHHHHHhhcCCCEEEEECcC
Confidence 67666321 11 23678888999996 998876543
No 365
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=26.42 E-value=5.8e+02 Score=25.35 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=18.9
Q ss_pred HHHHHHHhcccCCcEEEEeeccC
Q 046488 408 FILYDWDRVLRPGGLLWIDSFFC 430 (480)
Q Consensus 408 ~~L~EI~RVLKPGG~fiI~~f~~ 430 (480)
..+.+..++|+++|.++...+..
T Consensus 245 ~~~~~~~~~l~~~G~~v~~g~~~ 267 (306)
T cd08258 245 PALEQALELLRKGGRIVQVGIFG 267 (306)
T ss_pred HHHHHHHHHhhcCCEEEEEcccC
Confidence 37889999999999998776543
No 366
>PRK10867 signal recognition particle protein; Provisional
Probab=26.14 E-value=7.7e+02 Score=27.02 Aligned_cols=43 Identities=19% Similarity=0.083 Sum_probs=27.9
Q ss_pred CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
.+.||+|+....=.+..+.. +-.-+.++.++++|.+.+++.+-
T Consensus 181 ~~~~DvVIIDTaGrl~~d~~-lm~eL~~i~~~v~p~evllVlda 223 (433)
T PRK10867 181 ENGYDVVIVDTAGRLHIDEE-LMDELKAIKAAVNPDEILLVVDA 223 (433)
T ss_pred hcCCCEEEEeCCCCcccCHH-HHHHHHHHHHhhCCCeEEEEEec
Confidence 45689888754433222332 24467788899999999877653
No 367
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=25.78 E-value=3.6e+02 Score=27.12 Aligned_cols=102 Identities=17% Similarity=0.027 Sum_probs=57.2
Q ss_pred CCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHH-HHHHHhCCC--Ce--ee------ecccCC---CCCCCccch
Q 046488 326 IRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFN-EMIALRGLV--PL--YI------TINQRV---PFFDNTLDL 390 (480)
Q Consensus 326 iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~-~~iA~rgli--p~--~~------~~ae~L---PFpd~SFDl 390 (480)
.+.|+.+|||.=+-+.++... ++.+..+|.-...... ..+...+.. .- ++ ++.+.| .|..+.--+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 568999999999888888643 5666665532111111 122221111 00 11 122222 232333335
Q ss_pred heecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
+++-.++..+. .+.+..+|..+.+...||+.++++..
T Consensus 162 ~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 162 WLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred eeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 55556665554 44457899999998889999888643
No 368
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=25.31 E-value=5.8e+02 Score=25.66 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=16.9
Q ss_pred HHHHHHhcccCCcEEEEeec
Q 046488 409 ILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 409 ~L~EI~RVLKPGG~fiI~~f 428 (480)
.+.++.+.|++||.++....
T Consensus 254 ~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 254 TLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred HHHHHHHhccCCCEEEEEcc
Confidence 68899999999999887644
No 369
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=25.14 E-value=2.8e+02 Score=25.54 Aligned_cols=71 Identities=20% Similarity=0.154 Sum_probs=41.1
Q ss_pred HHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCe-eeecc-c-CCCCCC-CccchheecccccCccChhcHHHHHHHHH
Q 046488 339 FAARMREFNVTLVSAIINLGAPFNEMIALRGLVPL-YITIN-Q-RVPFFD-NTLDLIHTTRFLDGWIDFVLLDFILYDWD 414 (480)
Q Consensus 339 fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~-~~~~a-e-~LPFpd-~SFDlV~ss~vL~h~~d~~~l~~~L~EI~ 414 (480)
++..+...|..+.....-. + +.||+... ++... + ..+.+. +.+|++++.. + ..+....
T Consensus 12 la~a~~~~G~~v~~~~~yg---s----~~rGG~~~~~vris~~~~~~~~~~~~~Dilv~l~-------~----~~~~~~~ 73 (173)
T PF01558_consen 12 LARAAAREGYYVQSTPEYG---S----EIRGGPVVSHVRISDEPIIPSPPVGEADILVALD-------P----EALERHL 73 (173)
T ss_dssp HHHHHHHTTSEEEEEEEEE---S----SSSSSCEEEEEEEESS--SSSS-TSSESEEEESS-------H----HHHHHCG
T ss_pred HHHHHHHcCCCEEEEeCCC---h----hhcCCeEEEEEEEecCcCccCcccCCCCEEEEcC-------H----HHHHHHh
Confidence 3444455688876654221 1 12444322 22222 2 234444 8999999742 2 3566888
Q ss_pred hcccCCcEEEEee
Q 046488 415 RVLRPGGLLWIDS 427 (480)
Q Consensus 415 RVLKPGG~fiI~~ 427 (480)
.-|||||++++..
T Consensus 74 ~~l~~~g~vi~ns 86 (173)
T PF01558_consen 74 KGLKPGGVVIINS 86 (173)
T ss_dssp TTCETTEEEEEET
T ss_pred cCcCcCeEEEEEC
Confidence 8899999999975
No 370
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=25.09 E-value=69 Score=35.58 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=19.3
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEE
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTL 350 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~V 350 (480)
--|||||.|||.++...+..|.+-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~ 91 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADS 91 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCe
Confidence 369999999999988777766543
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=24.63 E-value=7.4e+02 Score=25.05 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=36.3
Q ss_pred CCccchheecccccCccChhcHHHHHHHHHhccc------CCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488 385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLR------PGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH 450 (480)
Q Consensus 385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLK------PGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl 450 (480)
.+.||+|+....=....+.. +-.-|.++.++.. |.+.+++.+-....+++.......+.++...+
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~-~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~ 222 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVN-LMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGI 222 (272)
T ss_pred HCCCCEEEEeCCCCCcchHH-HHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEE
Confidence 35689887643322222222 1224566667777 89988776544455556555555555555444
No 372
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=24.10 E-value=83 Score=34.00 Aligned_cols=47 Identities=26% Similarity=0.528 Sum_probs=34.6
Q ss_pred hhhhcccccccccc--cccCCcCCcCCcCchhhHHhhHHHHHHHHHHHhhhh
Q 046488 37 KFYSIRSLLVADAF--CNYNVDLKSEGRNGSQVIRGTVQIVMEKIRKEMSDL 86 (480)
Q Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (480)
+...++..|.++-+ |.. .++. ..+|-+.|++.||.||.||++|-+|-
T Consensus 204 ~~~~IDPWlInp~f~~c~~-vdF~--~~~G~e~lA~~Vd~~L~kir~KY~eY 252 (403)
T TIGR02049 204 KLIGIDPWLINPYFEKCDG-IDFD--DREGEDALATAVDQVLSKTQKKYEEY 252 (403)
T ss_pred HHhCCCcccccHhhhccCC-cCCC--ccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 44567888888877 544 2222 34578899999999999999998653
No 373
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=23.97 E-value=1.9e+02 Score=31.59 Aligned_cols=83 Identities=14% Similarity=0.007 Sum_probs=48.0
Q ss_pred CCeEEEECCC-CcHH-HHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheeccc-ccCccC
Q 046488 326 IRIGLDFSIG-TGTF-AARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRF-LDGWID 402 (480)
Q Consensus 326 iR~VLDVGCG-tG~f-Aa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~v-L~h~~d 402 (480)
.++||=||.| +|.. +.+|+++|+..+.+. +-......++|.+-+ ......+.++-.=+.+|+|+++.. -+++..
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia-NRT~erA~~La~~~~--~~~~~l~el~~~l~~~DvVissTsa~~~ii~ 254 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIA-NRTLERAEELAKKLG--AEAVALEELLEALAEADVVISSTSAPHPIIT 254 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEE-cCCHHHHHHHHHHhC--CeeecHHHHHHhhhhCCEEEEecCCCccccC
Confidence 3589999999 7875 568888898777665 333333444555433 111223344444467999998644 344445
Q ss_pred hhcHHHHHH
Q 046488 403 FVLLDFILY 411 (480)
Q Consensus 403 ~~~l~~~L~ 411 (480)
...++.++.
T Consensus 255 ~~~ve~a~~ 263 (414)
T COG0373 255 REMVERALK 263 (414)
T ss_pred HHHHHHHHh
Confidence 543333333
No 374
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=23.96 E-value=5.4e+02 Score=26.57 Aligned_cols=19 Identities=21% Similarity=0.119 Sum_probs=16.0
Q ss_pred HHHHHHhcccCCcEEEEee
Q 046488 409 ILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 409 ~L~EI~RVLKPGG~fiI~~ 427 (480)
.+.+..+.|+++|.++..+
T Consensus 297 ~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 297 TFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred hHHHHHHHhccCCEEEEEc
Confidence 5788899999999988754
No 375
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=23.59 E-value=64 Score=31.88 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.5
Q ss_pred CeEEEECCCCcHHHHHHhh
Q 046488 327 RIGLDFSIGTGTFAARMRE 345 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae 345 (480)
-+|+++|.|+|.++..+.+
T Consensus 20 ~~ivE~GaG~G~La~diL~ 38 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILR 38 (252)
T ss_dssp EEEEEES-TTSHHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHH
Confidence 4799999999999987765
No 376
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=23.07 E-value=3.8e+02 Score=26.31 Aligned_cols=87 Identities=11% Similarity=-0.016 Sum_probs=47.0
Q ss_pred CeEEEECC--CCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec-------ccCCCCCCCccchheeccc
Q 046488 327 RIGLDFSI--GTGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI-------NQRVPFFDNTLDLIHTTRF 396 (480)
Q Consensus 327 R~VLDVGC--GtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-------ae~LPFpd~SFDlV~ss~v 396 (480)
.+||=.|+ +.|..+..+++ +|+.++.++.+. ...+.+ ++-++..+... ...+ ....+|+|+...
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~--~~~~~~-~~~g~~~v~~~~~~~~~~~~~~--~~~~~d~vld~~- 221 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA--DAADYL-KKLGAKEVIPREELQEESIKPL--EKQRWAGAVDPV- 221 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH--HHHHHH-HHcCCCEEEcchhHHHHHHHhh--ccCCcCEEEECC-
Confidence 36777776 34555566665 488877665332 222222 22222222211 1112 234577766321
Q ss_pred ccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
. ...+.+..+.|+++|.++..+.
T Consensus 222 ----g-----~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 ----G-----GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred ----c-----HHHHHHHHHHhhcCCEEEEEee
Confidence 1 1367889999999999887643
No 377
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=22.61 E-value=5.5e+02 Score=27.55 Aligned_cols=97 Identities=14% Similarity=0.035 Sum_probs=50.3
Q ss_pred eEEEECCCCc--HHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeec----------ccCCCC--CCCccchhee
Q 046488 328 IGLDFSIGTG--TFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITI----------NQRVPF--FDNTLDLIHT 393 (480)
Q Consensus 328 ~VLDVGCGtG--~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~----------ae~LPF--pd~SFDlV~s 393 (480)
+|-=||.|.- .+|..|++.|..|++++.+. ...+. ..+|.++..... ...+.+ ....-|+|+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~--~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ--HAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH--HHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 5667788853 46778888899998888653 22222 223333321100 000111 1123566653
Q ss_pred ccccc----CccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 394 TRFLD----GWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 394 s~vL~----h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
+---. .-.+-..+..++.++.+.|++|-.+++..
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S 119 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES 119 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 21100 00111344667888999999988766643
No 378
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=22.56 E-value=7.4e+02 Score=24.45 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=46.8
Q ss_pred CeEEEECC--CCcHHHHHHhh-C-CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCC-----CCCCCccchheecccc
Q 046488 327 RIGLDFSI--GTGTFAARMRE-F-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRV-----PFFDNTLDLIHTTRFL 397 (480)
Q Consensus 327 R~VLDVGC--GtG~fAa~Lae-~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~L-----PFpd~SFDlV~ss~vL 397 (480)
.+||=.|+ +.|..+..+++ . |+.++.++.+. ... ..+++-+...+....+.+ ....+.+|+|+...
T Consensus 150 ~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~--~~~-~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~-- 224 (336)
T TIGR02817 150 RALLIIGGAGGVGSILIQLARQLTGLTVIATASRP--ESQ-EWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLT-- 224 (336)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcH--HHH-HHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcC--
Confidence 36777774 56677777776 4 88887775332 222 222222222222211100 01234577776321
Q ss_pred cCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488 398 DGWIDFVLLDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI 425 (480)
.. ...+.++.+.|+++|+++.
T Consensus 225 ---~~----~~~~~~~~~~l~~~G~~v~ 245 (336)
T TIGR02817 225 ---HT----DQHFKEIVELLAPQGRFAL 245 (336)
T ss_pred ---Cc----HHHHHHHHHHhccCCEEEE
Confidence 11 2368899999999999875
No 379
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=22.55 E-value=5.5e+02 Score=25.78 Aligned_cols=20 Identities=20% Similarity=0.007 Sum_probs=16.9
Q ss_pred HHHHHHHhcccCCcEEEEee
Q 046488 408 FILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 408 ~~L~EI~RVLKPGG~fiI~~ 427 (480)
..+.++.|.|+++|.++..+
T Consensus 255 ~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 255 ATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred HHHHHHHHHhhcCCeEEEEC
Confidence 36899999999999988653
No 380
>PRK14532 adenylate kinase; Provisional
Probab=22.48 E-value=3.4e+02 Score=25.00 Aligned_cols=39 Identities=8% Similarity=-0.021 Sum_probs=25.2
Q ss_pred HHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCc
Q 046488 409 ILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKY 447 (480)
Q Consensus 409 ~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGf 447 (480)
++.+....+..|+-+++++|....++.+.+.++++..|.
T Consensus 67 ~~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~ 105 (188)
T PRK14532 67 LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQ 105 (188)
T ss_pred HHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCC
Confidence 445555555566667788887777766666666666553
No 381
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=22.31 E-value=1.9e+02 Score=30.22 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=27.4
Q ss_pred cCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecC
Q 046488 319 LDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIIN 356 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d 356 (480)
|.+.++. .++|.=+|.|+-+..+++. +..++++|.|
T Consensus 16 L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vigiD~D 53 (305)
T TIGR00006 16 LNIKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIGIDRD 53 (305)
T ss_pred cCcCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEEEcCC
Confidence 3344543 7999999999999988875 3578888766
No 382
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=22.14 E-value=25 Score=33.36 Aligned_cols=94 Identities=17% Similarity=0.098 Sum_probs=41.1
Q ss_pred eEEEECCCCcHHHHHHhhC--CCEEEEEecCC-ChhHHHHHHHhCCCCeeeec----ccCCCCCCCccchheecccccCc
Q 046488 328 IGLDFSIGTGTFAARMREF--NVTLVSAIINL-GAPFNEMIALRGLVPLYITI----NQRVPFFDNTLDLIHTTRFLDGW 400 (480)
Q Consensus 328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~-~~~~~~~iA~rglip~~~~~----ae~LPFpd~SFDlV~ss~vL~h~ 400 (480)
-|||+|=|.|..=-+|.+. +-.++.++-.. .++...-- ++ .++++. ...+++.....-++|+.....+-
T Consensus 31 ~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~-~~---~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~ 106 (160)
T PF12692_consen 31 PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPP-EE---DLILGDIRETLPALARFGAGAALAHADIGTGDK 106 (160)
T ss_dssp -EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GG---GEEES-HHHHHHHHHHH-S-EEEEEE----S-H
T ss_pred ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCc-hH---heeeccHHHHhHHHHhcCCceEEEEeecCCCCc
Confidence 4999999999988888774 33444444211 12211100 00 123333 12244455566667765544322
Q ss_pred cChhc-HHHHHHHHHhcccCCcEEEE
Q 046488 401 IDFVL-LDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 401 ~d~~~-l~~~L~EI~RVLKPGG~fiI 425 (480)
..+.. ...+-.-|..+|.|||+++-
T Consensus 107 ~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 107 EKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 11111 11123347889999999654
No 383
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=21.96 E-value=4.6e+02 Score=25.49 Aligned_cols=93 Identities=18% Similarity=0.095 Sum_probs=47.2
Q ss_pred cCCCCCCCCeEEEECCC--CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc-----cCC--CCCCCcc
Q 046488 319 LDIKPGEIRIGLDFSIG--TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN-----QRV--PFFDNTL 388 (480)
Q Consensus 319 L~l~~g~iR~VLDVGCG--tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a-----e~L--PFpd~SF 388 (480)
..+.++. +||=.|.| .|..++.++. .|+.++.++.+. ...+.+..-......... +.+ -.....+
T Consensus 162 ~~~~~~~--~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T cd08266 162 ARLRPGE--TVLVHGAGSGVGSAAIQIAKLFGATVIATAGSE---DKLERAKELGADYVIDYRKEDFVREVRELTGKRGV 236 (342)
T ss_pred cCCCCCC--EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCC
Confidence 3444453 67877765 4555555544 588877665432 122222221121111110 000 0123457
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID 426 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~ 426 (480)
|+++.... ...+.++.+.|+++|.++..
T Consensus 237 d~~i~~~g----------~~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 237 DVVVEHVG----------AATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred cEEEECCc----------HHHHHHHHHHhhcCCEEEEE
Confidence 77764321 12467788999999998865
No 384
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=21.85 E-value=1.1e+02 Score=33.26 Aligned_cols=48 Identities=29% Similarity=0.571 Sum_probs=30.7
Q ss_pred hhhhhcccccccccc--cccCCcCCcCCcCchhhHHhhHHHHHHHHHHHhhhh
Q 046488 36 SKFYSIRSLLVADAF--CNYNVDLKSEGRNGSQVIRGTVQIVMEKIRKEMSDL 86 (480)
Q Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (480)
.+...+++.|.++-+ |.. ..+. ..+|-|.|++.||.+|.||++|-+|-
T Consensus 206 a~~~~IDPWlInp~f~~c~~-vdF~--~~~G~~~La~~Vd~lL~kir~KY~ey 255 (404)
T PF08886_consen 206 AKLIGIDPWLINPYFEQCGG-VDFQ--EREGEECLASAVDQLLAKIRKKYKEY 255 (404)
T ss_dssp HHHHT--GGGG---EEEEE----TT--SSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCccccccchhccCC-ccCC--ccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 355678888888877 544 2333 24588899999999999999888654
No 385
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=21.68 E-value=3.4e+02 Score=29.66 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=51.7
Q ss_pred CeEEEECCCC-cHH-HHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChh
Q 046488 327 RIGLDFSIGT-GTF-AARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFV 404 (480)
Q Consensus 327 R~VLDVGCGt-G~f-Aa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~ 404 (480)
++|+=+|+|. |.. +..++..|+.|+.++.+.. ...+.+..| ... ....+.+ ..+|+|+.... ..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~--ra~~A~~~G-~~v-~~l~eal----~~aDVVI~aTG-----~~- 278 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI--CALQAAMDG-FRV-MTMEEAA----ELGDIFVTATG-----NK- 278 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch--hhHHHHhcC-CEe-cCHHHHH----hCCCEEEECCC-----CH-
Confidence 4899999985 322 3344456888877765532 112222332 221 1111111 25788876421 11
Q ss_pred cHHHHHH-HHHhcccCCcEEEEeeccCChhhHHH
Q 046488 405 LLDFILY-DWDRVLRPGGLLWIDSFFCAKEDMND 437 (480)
Q Consensus 405 ~l~~~L~-EI~RVLKPGG~fiI~~f~~~~edL~~ 437 (480)
.++. +..+.+|+|++++..+.+...-++..
T Consensus 279 ---~vI~~~~~~~mK~GailiNvG~~d~Eid~~~ 309 (425)
T PRK05476 279 ---DVITAEHMEAMKDGAILANIGHFDNEIDVAA 309 (425)
T ss_pred ---HHHHHHHHhcCCCCCEEEEcCCCCCccChHH
Confidence 2454 78999999999888765544333333
No 386
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=21.49 E-value=4.4e+02 Score=27.81 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.9
Q ss_pred HHHHHHHhcccCCcEEEEeecc
Q 046488 408 FILYDWDRVLRPGGLLWIDSFF 429 (480)
Q Consensus 408 ~~L~EI~RVLKPGG~fiI~~f~ 429 (480)
.++.+..+++|+||.+++...+
T Consensus 280 ~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 280 TVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred HHHHHHHHHhhCCCEEEEeeec
Confidence 3789999999999999987654
No 387
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=21.47 E-value=8.1e+02 Score=24.34 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=50.4
Q ss_pred CCCCCCCCeEEEECCC--CcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeec--------ccCCCCCCCcc
Q 046488 320 DIKPGEIRIGLDFSIG--TGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITI--------NQRVPFFDNTL 388 (480)
Q Consensus 320 ~l~~g~iR~VLDVGCG--tG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~--------ae~LPFpd~SF 388 (480)
.+.+++ +||=.|+| .|..++.+++. |+.++.++.+. .....+..-+ +..++.. ..++ ...+.+
T Consensus 162 ~~~~~~--~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~--~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~-~~~~~v 235 (341)
T cd08297 162 GLKPGD--WVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGD--EKLELAKELG-ADAFVDFKKSDDVEAVKEL-TGGGGA 235 (341)
T ss_pred CCCCCC--EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHcC-CcEEEcCCCccHHHHHHHH-hcCCCC
Confidence 455554 67777765 56676666664 88877765442 2222222222 2222111 0111 123457
Q ss_pred chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488 389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427 (480)
Q Consensus 389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~ 427 (480)
|+|+.... . ...+.++.|.|+++|.++..+
T Consensus 236 d~vl~~~~-----~----~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 236 HAVVVTAV-----S----AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CEEEEcCC-----c----hHHHHHHHHHhhcCCEEEEec
Confidence 77763111 1 236888999999999988754
No 388
>PLN02494 adenosylhomocysteinase
Probab=21.25 E-value=3.1e+02 Score=30.62 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=51.8
Q ss_pred CeEEEECCCC-cHH-HHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChh
Q 046488 327 RIGLDFSIGT-GTF-AARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFV 404 (480)
Q Consensus 327 R~VLDVGCGt-G~f-Aa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~ 404 (480)
++|+=+|+|. |.. +..+...|..|+.++.+.. ........| .... ...+.+ ...|+|++...- .
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~--r~~eA~~~G-~~vv-~leEal----~~ADVVI~tTGt-----~- 320 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI--CALQALMEG-YQVL-TLEDVV----SEADIFVTTTGN-----K- 320 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--hhHHHHhcC-Ceec-cHHHHH----hhCCEEEECCCC-----c-
Confidence 5899999985 433 3344445888877765531 112222222 2211 111111 246888763221 1
Q ss_pred cHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHH
Q 046488 405 LLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYL 439 (480)
Q Consensus 405 ~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~ 439 (480)
..+..+....+||||+++..+.+...-+...+.
T Consensus 321 --~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~ 353 (477)
T PLN02494 321 --DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLE 353 (477)
T ss_pred --cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHh
Confidence 123478889999999998876544333334433
No 389
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=21.10 E-value=5.4e+02 Score=25.75 Aligned_cols=35 Identities=9% Similarity=-0.027 Sum_probs=24.3
Q ss_pred CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488 385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
.+.+|+|+.... . +..+.++.+.|+|+|.++....
T Consensus 230 ~~~~d~v~d~~g-----~----~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 230 TEGFDVGLEMSG-----A----PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCCCCEEEECCC-----C----HHHHHHHHHHHhcCCEEEEEec
Confidence 445777774211 1 2478899999999999888643
No 390
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=20.77 E-value=2.8e+02 Score=31.14 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=50.3
Q ss_pred CeEEEECCCCcH-HHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc--------------cC--------CC
Q 046488 327 RIGLDFSIGTGT-FAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN--------------QR--------VP 382 (480)
Q Consensus 327 R~VLDVGCGtG~-fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a--------------e~--------LP 382 (480)
.+||=+|+|.-. .++.++. .|..++.++.+. ..++++..-|...+..... +. ++
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~--~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP--EVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 589999999754 4444444 487777666542 2233322222111111100 00 12
Q ss_pred CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEE
Q 046488 383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLW 424 (480)
Q Consensus 383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fi 424 (480)
-.-..+|+|+++-.+..-..+ ..+..|+-+.+|||+.++
T Consensus 243 e~~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHhCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEE
Confidence 113569999865433222222 237889999999999865
No 391
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=20.47 E-value=1.8e+02 Score=30.81 Aligned_cols=94 Identities=15% Similarity=0.038 Sum_probs=45.7
Q ss_pred CeEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec--ccCCCCCCCccchheecccccCccC
Q 046488 327 RIGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI--NQRVPFFDNTLDLIHTTRFLDGWID 402 (480)
Q Consensus 327 R~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~--ae~LPFpd~SFDlV~ss~vL~h~~d 402 (480)
.+|+=+|+| .|..++..+. .|+.++.++.+. ...+.++........... .+.+.-.-..+|+|+..-....-..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~--~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI--DRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH--HHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 468889988 4555555444 588776666442 222333333222111111 0111111135799886432211111
Q ss_pred hhcHHHHHHHHHhcccCCcEEEE
Q 046488 403 FVLLDFILYDWDRVLRPGGLLWI 425 (480)
Q Consensus 403 ~~~l~~~L~EI~RVLKPGG~fiI 425 (480)
+. .+-.++.+.+|||++++-
T Consensus 246 p~---lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 246 PK---LVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred Cc---CcCHHHHhcCCCCCEEEE
Confidence 11 133666777899988664
No 392
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=20.22 E-value=4.3e+02 Score=27.76 Aligned_cols=92 Identities=11% Similarity=0.019 Sum_probs=50.5
Q ss_pred CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCcc-Chhc
Q 046488 327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI-DFVL 405 (480)
Q Consensus 327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~-d~~~ 405 (480)
+.||=+|--...+...|....+.+.+...+ ..+ ............+.....+ ....||+|+. .|+ ....
T Consensus 21 ~~~l~~~~~~d~~~~~l~~~~~~~~~~~~~---~~~-~~~~~~~~~~~f~~~~~~~-~~~~~d~~~~-----~~pk~k~~ 90 (342)
T PRK09489 21 RRVLFAGDLQDDLPAQLDAASVRVHTQQFH---HWQ-VLSRQMGDNARFSLVATAE-DVADCDTLIY-----YWPKNKQE 90 (342)
T ss_pred CcEEEEcCcchhhHHhhhccceEEehhhhH---HHH-HHHhhcCCceEeccccCCc-cCCCCCEEEE-----ECCCCHHH
Confidence 368888877777877776333333332111 111 1111111222333211111 1357898773 454 2334
Q ss_pred HHHHHHHHHhcccCCcEEEEeec
Q 046488 406 LDFILYDWDRVLRPGGLLWIDSF 428 (480)
Q Consensus 406 l~~~L~EI~RVLKPGG~fiI~~f 428 (480)
.+..|.++.+.|+|||.+++.+-
T Consensus 91 ~~~~l~~~~~~l~~g~~i~~~G~ 113 (342)
T PRK09489 91 AQFQLMNLLSLLPVGTDIFVVGE 113 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEEe
Confidence 56789999999999999999753
No 393
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=20.18 E-value=1.1e+03 Score=25.52 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=27.9
Q ss_pred hhhhHHHhcCC-----CCCCCCeEEEECCCCcHH-HHHHh-hCCCEEEEEe
Q 046488 311 ADFLIPEVLDI-----KPGEIRIGLDFSIGTGTF-AARMR-EFNVTLVSAI 354 (480)
Q Consensus 311 ad~~I~~vL~l-----~~g~iR~VLDVGCGtG~f-Aa~La-e~gV~Vv~vd 354 (480)
.+.|++.+... .....+.|+|.+.|+|.. +..+. +.|+.++.+.
T Consensus 159 ~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG~~vv~~~ 209 (464)
T COG1109 159 LDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELGAEVVSIN 209 (464)
T ss_pred HHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcCCEEEEec
Confidence 45577655442 222368999999999864 44444 4587776553
No 394
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.04 E-value=71 Score=30.71 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=30.9
Q ss_pred hHHHhcCCCCCCC-CeEEEECCCCcHHHHHHhhCC-CEEEEEecC
Q 046488 314 LIPEVLDIKPGEI-RIGLDFSIGTGTFAARMREFN-VTLVSAIIN 356 (480)
Q Consensus 314 ~I~~vL~l~~g~i-R~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d 356 (480)
.+..+|.+.++.. -+.+|+|.|.|......++.| ...+++.++
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELN 104 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELN 104 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceecc
Confidence 5667776554432 479999999999888888776 445666665
Done!