BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046498
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 77/121 (63%), Gaps = 8/121 (6%)
Query: 75 AIDEKENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV--- 131
A +E+++ + L NF++ LA +++++V FYAPWC K LAPEY AA +LK +
Sbjct: 2 APEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIR 61
Query: 132 LAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191
LAKVDA E +LA+++G++GYPTI FF NG DT K+ + DDIVN++K +
Sbjct: 62 LAKVDATEESDLAQQYGVRGYPTIKFFRNG---DTA--SPKEYTAGREADDIVNWLKKRT 116
Query: 192 A 192
Sbjct: 117 G 117
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA---VLAKVDAIN 139
++L+ NF DV+ ++V FYAPWC KKLAPEY+ AA EL ++ LAKVDA
Sbjct: 10 LSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATE 69
Query: 140 EIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKK 173
+ +LAKR+ + GYPT+ F G D Y R+K
Sbjct: 70 QTDLAKRFDVSGYPTLKIFRKGRPFD-YNGPREK 102
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 81 NAVNLSDKNFSDVLAKNQH---VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDA 137
+ + L+D NF ++ ++V F+APWC K+LAPEY+AAAT LKG LAKVD
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDC 61
Query: 138 INEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192
++G+ GYPT+ F +G Y R D IV+++K +
Sbjct: 62 TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPR-------TADGIVSHLKKQAG 109
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 4/92 (4%)
Query: 85 LSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA---VLAKVDAINEI 141
L+ +NF +V+ ++V FYAPWC KKLAPEY+ AA EL ++ LAKVDA E
Sbjct: 135 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET 194
Query: 142 ELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKK 173
+LAKR+ + GYPT+ F G D Y R+K
Sbjct: 195 DLAKRFDVSGYPTLKIFRKGRPYD-YNGPREK 225
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 76 IDEKENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK---AVL 132
+ E+ + L+D NF + +A V++ FYAPWC K+ APEY+ A LK K +
Sbjct: 11 VKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPV 70
Query: 133 AKVDAINEIELAKRWGIQGYPTIYFFVNGVHVD 165
AK+DA + LA R+ + GYPTI G VD
Sbjct: 71 AKIDATSASVLASRFDVSGYPTIKILKKGQAVD 103
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 81 NAVNLSDKNFSDVLAKNQH---VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDA 137
+ + L+D NF ++ ++V F+APWC +K+LAPEY+AAAT LKG LAKVD
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDC 61
Query: 138 INEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192
++G+ GYPT+ F +G Y R D IV+++K +
Sbjct: 62 TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPR-------TADGIVSHLKKQAG 109
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 88 KNFSDVLA-KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA--VLAKVDAINEIELA 144
+NF +++ +N+ V++ FYAPWC K L P+YK +L V+AK+DA ++
Sbjct: 360 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVP 418
Query: 145 KRWGIQGYPTIYF 157
+ ++G+PTIYF
Sbjct: 419 SPYEVRGFPTIYF 431
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 81 NAVNLSDKNFS-DVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATEL----KGKAVLAKV 135
+ + L+D +F +VL MV FYAPWC K L PE+ AAA+E+ KGK LA V
Sbjct: 8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAV 67
Query: 136 DA-INEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDI 183
DA +N++ LA R+GI+G+PTI F G Y R + + + D+
Sbjct: 68 DATVNQV-LASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDL 115
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 78 EKENAV-NLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK---AVLA 133
++EN V L+D NF + +A V++ FYAPWC K+ APEY+ A+ LK +A
Sbjct: 14 KEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVA 73
Query: 134 KVDAINEIELAKRWGIQGYPTIYFFVNGVHVD 165
K+DA + LA ++ + GYPTI G VD
Sbjct: 74 KIDATSASMLASKFDVSGYPTIKILKKGQAVD 105
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC W K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 78 EKENAVNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVD 136
EK + ++D +F +DVL+ N+ V+V F+A WC SK +AP + ATE +AK+D
Sbjct: 7 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLD 66
Query: 137 AINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIV 184
E A+ + + PT+ F +G V + K L + D+V
Sbjct: 67 VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 114
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 80 ENAVNLSDKNFS-DVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI 138
++ + L+ NF+ +V+ + +V FYAPWC ++L PE+K AAT LK + V+A
Sbjct: 17 DDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNAD 76
Query: 139 NEIELAKRWGIQGYPTIYFF 158
L ++G+QG+PTI F
Sbjct: 77 KHQSLGGQYGVQGFPTIKIF 96
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 78 EKENAVNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVD 136
EK + ++D +F +DVL+ N+ V+V F+A WC K +AP + ATE +AK+D
Sbjct: 5 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLD 64
Query: 137 AINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIV 184
E A+ + + PT+ F +G V + K L + D+V
Sbjct: 65 VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 112
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 67 DRKYNLTPAIDEKENAVNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATE 125
DR ++T + EK + ++D +F +DVL+ N+ V+V F+A WC K +AP + ATE
Sbjct: 1 DRWGSMTDS--EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE 58
Query: 126 LKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIV 184
+AK+D E A+ + + PT+ F +G V + K L + D+V
Sbjct: 59 RATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 117
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
+ ++D+NF + L ++ V+V F+A WC + +AP + A E +GK ++AK+D +
Sbjct: 5 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 64
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKR 174
A R+ + PT+ F +G V+ + KR
Sbjct: 65 TAXRYRVXSIPTVILFKDGQPVEVLVGAQPKR 96
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
+ ++D+NF + L ++ V+V F+A WC + +AP + A E +GK ++AK+D +
Sbjct: 4 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 63
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKR 174
A R+ + PT+ F +G V+ + KR
Sbjct: 64 TAXRYRVXSIPTVILFKDGQPVEVLVGAQPKR 95
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 71 NLTPAIDEKENAVNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK 129
L P + ++L+D +F +DVL + ++V F+A WC +K +AP A E +GK
Sbjct: 13 GLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK 72
Query: 130 AVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161
+AK++ A ++GI+G PT+ F NG
Sbjct: 73 LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 104
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%)
Query: 80 ENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKK------LAPEYKAAATELKGKAVLA 133
EN VN+++ N VL ++ V FY FWS++ L P ++ A + G+ +LA
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFY----FWSERSQHCLQLTPILESLAAQYNGQFILA 62
Query: 134 KVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTY 167
K+D E +A ++G++ PT+Y F NG VD +
Sbjct: 63 KLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGF 96
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC SK +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC +K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 80 ENAVNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI 138
E ++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 2 EKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 139 NEIELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 85 LSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELA 144
L+++NF +V+ N+ V+V +A WC P YK A + KGKAV +++ ++A
Sbjct: 9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIA 68
Query: 145 KRWGIQGYPTIYFFVNGVHVDT 166
++ + PT FVNG VD+
Sbjct: 69 DKYSVLNIPTTLIFVNGQLVDS 90
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 100 VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159
++V F+APWC +++AP+++AAA L G+ LAK+D +A R IQG P F
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFH 126
Query: 160 NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192
G + R ++V +++ K+
Sbjct: 127 KGRELARAAGARPA-------SELVGFVRGKLG 152
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D++F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP + A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 15 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 74
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 75 GTAPKYGIRGIPTLLLFKNG 94
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Query: 80 ENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKK------LAPEYKAAATELKGKAVLA 133
+N VN+++ N L ++ V FY FWS++ L P ++ A + G+ +LA
Sbjct: 7 QNIVNINESNLQQTLEQSXTTPVLFY----FWSERSQHCLQLTPVLESLAAQYHGQFILA 62
Query: 134 KVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTY 167
K+D E +A ++G++ PT+Y F NG VD +
Sbjct: 63 KLDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGF 96
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 6 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 65
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 66 GTAPKYGIRGTPTLLLFKNG 85
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 78 EKENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEY-KAAATELKGKAVLAKVD 136
E V L+ +F++ + + V+ F+APWC K +APEY KAA T ++ LA++D
Sbjct: 12 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQID 71
Query: 137 AINEIELAKRWGIQGYPTIYFFVN 160
+L I G+P++ F N
Sbjct: 72 CTENQDLCMEHNIPGFPSLKIFKN 95
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 100 VMVAFYAPWCFWSKKLAPEYKAAA---TELKGKAVLAKVDAI-NEIELAKRWGIQGYPTI 155
V+V +YAPWC K+LAP Y+ A ++AK+D N++ + I+GYPTI
Sbjct: 379 VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDV---RGVVIEGYPTI 435
Query: 156 YFFVNG 161
+ G
Sbjct: 436 VLYPGG 441
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 85 LSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKA-AATELKGKAV--LAKVDAINEI 141
L++ NF D +A+ + FYAPWC K LAP ++ + E G A +A+VD E
Sbjct: 12 LTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER 70
Query: 142 ELAKRWGIQGYPTIYFFVNGVHVDTYYHDRK----KRVFLEQGDD 182
+ ++ ++GYPT+ F G V + R R L Q D
Sbjct: 71 NICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQAKD 115
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 85 LSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKA-AATELKGKAV--LAKVDAINEI 141
L++ NF D +A+ + FYAPWC K LAP ++ + E G A +A+VD E
Sbjct: 5 LTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER 63
Query: 142 ELAKRWGIQGYPTIYFFVNGVHVDTYYHDRK----KRVFLEQGDD 182
+ ++ ++GYPT+ F G V + R R L Q D
Sbjct: 64 NICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQAKD 108
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A + +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC + +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 80 ENAVNLSDKNFSD-VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI 138
+ +++L+ + F++ VL H +V FYAPWC + APE++ A +KGK KVD
Sbjct: 3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQ 62
Query: 139 NEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQ 179
+ ++ GI+ YP++ + Y KK ++ EQ
Sbjct: 63 AYPQTCQKAGIKAYPSVKLY--------QYERAKKSIWEEQ 95
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++++D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 85 LSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKA-AATELKGKAV--LAKVDAINEI 141
L++ NF D +A+ + FYAPWC K LAP ++ + E G A +A+VD E
Sbjct: 10 LTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER 68
Query: 142 ELAKRWGIQGYPTIYFFVNGVHVDTYYHDR 171
+ ++ ++GYPT+ F G V + R
Sbjct: 69 NICSKYSVRGYPTLLLFRGGKKVSEHSGGR 98
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 93 VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA--VLAKVDAINEIELAKRWGIQ 150
V+ + V++ FYAPWC K+L P Y + + KG+ V+AK+DA ++ ++
Sbjct: 21 VMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVE 80
Query: 151 GYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYI 187
G+PTIYF +G D+K + E G+ + ++
Sbjct: 81 GFPTIYFAPSG--------DKKNPIKFEGGNRDLEHL 109
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
V +K F+ +A +V F+APWC + ++P + A + G+ + KV+
Sbjct: 36 VEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG 95
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQ 179
LA R+G++ PT+ F G V T+ +RV E+
Sbjct: 96 LAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEER 132
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 79 KENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI 138
KE +L+ KNF + + KN+ V+V F+A WC LAP + A + + K++
Sbjct: 5 KEPVKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYP-QVAFGKLNTE 63
Query: 139 NEIELAKRWGIQGYPTIYFFVNGVHVD 165
++A R+GI PTI FF NG VD
Sbjct: 64 ESQDIAMRYGIMSLPTIMFFKNGELVD 90
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L++ +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 81 NAVNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN 139
+ + ++D+NF +VL ++ V+V F+APWC + +AP + A E +GK + KV+
Sbjct: 2 SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDE 61
Query: 140 EIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGD 181
A ++GI+ PT+ F NG VD + K E+ D
Sbjct: 62 NPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERID 103
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+ PT+ F NG
Sbjct: 65 GTAPKYGIRSIPTLLLFKNG 84
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELK------GKAVLAKVD 136
+L +N ++L +V FYA WC +S+ L P ++ A+ +K + V A+VD
Sbjct: 8 TSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVD 67
Query: 137 AINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRK 172
++A+R+ I YPT+ F NG Y ++
Sbjct: 68 CDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQR 103
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 82 AVNLSDKNFSD-VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE 140
+++L+ + F++ VL H +V FYAPW S+ APE++ A +KGK KVD
Sbjct: 659 SIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAY 718
Query: 141 IELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQ 179
+ ++ GI+ YP++ + Y KK ++ EQ
Sbjct: 719 PQTCQKAGIKAYPSVKLY--------QYERAKKSIWEEQ 749
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 62 YESFKDRKYNLTPAIDEKENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKA 121
YES+ +Y+ D+ E + L + F + + V FY+P S LAP ++
Sbjct: 99 YESWSYYRYDFGIYDDDPE-IITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWRE 157
Query: 122 AATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFL 177
A E+ G + V+ ++ L + G+ YP+++ F +G+ Y DR K +
Sbjct: 158 FAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLV 213
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 83 VNLSDKNFSDVLAKNQH---VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN 139
V+L+ F++++ + +H MV FY+PW S+ L PE+K A L G + VD
Sbjct: 546 VSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQ 605
Query: 140 EIELAKRWGIQGYPTIYFFVNGVHVDTYYH 169
+ +Q YP I F+ YH
Sbjct: 606 YHSFCTQENVQRYPEIRFYPQKSSKAYQYH 635
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVN 160
+V F+APW S+ L PE + A+T L G+ + +D L + IQ YPT F N
Sbjct: 459 LVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVF-N 517
Query: 161 GVHVDTYYHDRKKRVFLEQGDDIVN 185
+ Y LE +D+ N
Sbjct: 518 QSSIHEYEGHHSAEQILEFIEDLRN 542
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 16/107 (14%)
Query: 88 KNFSD-VLAKNQHVMVAFYAPWCFWSKKLAPEYKA-----AATELKGKAVLAKVDAI-NE 140
KN+++ VL + V++ FYAPWC K LAP+Y+ A +E K + V+AKVDA N+
Sbjct: 15 KNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND 74
Query: 141 IELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYI 187
+ IQG+PTI + G + + V +D++ +I
Sbjct: 75 VPDE----IQGFPTIKLYPAGAKGQPVTYSGSRTV-----EDLIKFI 112
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 88 KNFSDVLA-KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA--VLAKVDAINEIELA 144
+NF +++ +N+ V++ FYAPWC K L P+YK +L V+AK+DA ++
Sbjct: 35 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVP 93
Query: 145 KRWGIQGYPTIYF 157
+ ++G+PTIYF
Sbjct: 94 SPYEVRGFPTIYF 106
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +DVL + ++V F+A WC K +A A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 GTAPKYGIRGIPTLLLFKNG 84
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFW-SKKLAPEYKAAATELKGKAVLAKVDAINE 140
++L+D +F +DVL + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64
Query: 141 IELAKRWGIQGYPTIYFFVNG 161
A ++GI+G PT+ F NG
Sbjct: 65 PGTAPKYGIRGIPTLLLFKNG 85
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
+N + + +L + ++ F+APWC + AP + A E GK KV+ E
Sbjct: 41 INATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPA 100
Query: 143 LAKRWGIQGYPTIYFFVNGVHVD 165
L+ R+ I+ PTI + NG +D
Sbjct: 101 LSTRFRIRSIPTIXLYRNGKXID 123
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 93 VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGY 152
VL VMV F+APWC SK +AP A E GK + K++ +A ++ I+
Sbjct: 14 VLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSI 73
Query: 153 PTIYFFVNG 161
PT+ FF NG
Sbjct: 74 PTVLFFKNG 82
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 61 SYESFKDRKYNLTPAIDEKENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYK 120
YES+ +Y+ D+ E + L + F + + V FY+P C LAP ++
Sbjct: 79 QYESWSYYRYDFGIYDDDPE-IITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWR 137
Query: 121 AAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFL 177
A E+ G + V+ ++ L + G+ YP+++ F +G+ Y DR K +
Sbjct: 138 EFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLV 194
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 86 SDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAK 145
S F ++++N+ V+V F+A WC K++AP Y+ ++ K V KVD E+ +
Sbjct: 15 SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYE-ECSKTYTKMVFIKVDVDEVSEVTE 73
Query: 146 RWGIQGYPTIYFFVNGVHVDT 166
+ I PT + NG VDT
Sbjct: 74 KENITSMPTFKVYKNGSSVDT 94
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIY 156
++ +V FYA WC K +AP + + E GK + KV+ E ELA+ +GIQG PTI+
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIW 110
Query: 157 F 157
F
Sbjct: 111 F 111
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 84 NLSDK-NFSD-VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
N+ D +F D V+ V+V F+A WC K L P + + GK V+AKVD +
Sbjct: 16 NIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT 75
Query: 142 ELAKRWGIQGYPTIYFFVNGVHVDTY 167
+LA + + PT+ NG VD +
Sbjct: 76 DLAIEYEVSAVPTVLAMKNGDVVDKF 101
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
V +D++FS ++ V+ F+APWC SK +AP + E+ K + K+D E
Sbjct: 4 VKATDQSFSAETSEG-VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQE 62
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLE 178
A ++G+ PT+ +G V+T + K E
Sbjct: 63 TAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQE 98
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 84 NLSDKNFSD-VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
+++D ++ + VL VMV F+APWC K +AP A E GK + K++
Sbjct: 4 DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 143 LAKRWGIQGYPTIYFFVNG 161
+A ++ I+ PT+ FF NG
Sbjct: 64 IATQYNIRSIPTVLFFKNG 82
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 93 VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGY 152
VL VMV F+APWC K +AP A E GK + K++ +A ++ I+
Sbjct: 13 VLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSI 72
Query: 153 PTIYFFVNG 161
PT+ FF NG
Sbjct: 73 PTVLFFKNG 81
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 85 LSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAINEIEL 143
++D+N+ ++L + M+ FYAPWC + L PE+++ A + V +AKVD + L
Sbjct: 12 ITDENWRELLEGDW--MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGL 69
Query: 144 AKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190
+ R+ I PTIY +G Y R K+ D +N+I K
Sbjct: 70 SGRFIINALPTIYHCKDG-EFRRYQGPRTKK-------DFINFISDK 108
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
V +D++FS ++ V+ F+APWC SK +AP + E+ K + K+D E
Sbjct: 4 VKATDQSFSAETSEG-VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQE 62
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLE 178
A ++G+ PT+ +G V+T + K E
Sbjct: 63 TAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQE 98
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 85 LSDKNFSDV-LAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA--VLAKVDAI-NE 140
L KNF DV + ++V V FYAPWC K+LAP + K V+AK+D+ NE
Sbjct: 254 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 313
Query: 141 IELAKRWGIQGYPTIYFF 158
+E K + +PT+ FF
Sbjct: 314 VEAVK---VHSFPTLKFF 328
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 85 LSDKNFSDV-LAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA--VLAKVDAI-NE 140
L KNF DV + ++V V FYAPWC K+LAP + K V+AK+D+ NE
Sbjct: 12 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 71
Query: 141 IELAKRWGIQGYPTIYFF 158
+E K + +PT+ FF
Sbjct: 72 VEAVK---VHSFPTLKFF 86
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
+ L+D NF + ++ V+V F+A WC + +AP + A K +AK++ E
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE 62
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVN 185
++GI PT+ F G V + K Q D++
Sbjct: 63 TTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
+ L+D NF + ++ V+V F+A WC + +AP + A K +AK++ E
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE 62
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVN 185
++GI PT+ F G V + K Q D++
Sbjct: 63 TTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 89 NFSDVLAKNQHVMVAFYAPWCFWSKKLAPEY-KAAATELKGKAVLAKVDAINEIELAKRW 147
F V ++ V++ F+A WC K + P + K + T K KVD + ++A+
Sbjct: 25 QFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEV 84
Query: 148 GIQGYPTIYFFVNGVHVDT 166
GI+ PT FF NG +DT
Sbjct: 85 GIRAMPTFVFFKNGQKIDT 103
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFW--------------SKKLAPEYKAAATELK 127
++L+D +F +DVL + ++V F+A WC K +AP A E +
Sbjct: 6 IHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ 65
Query: 128 GKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161
GK +AK++ A ++GI+G PT+ F NG
Sbjct: 66 GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A + V++ F+A WC K ++P+ +T+ V+ KVD ++A + I PT
Sbjct: 18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPT 77
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
F NGV V+ + KR+
Sbjct: 78 FVFLKNGVKVEEFAGANAKRL 98
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
++L KNF LA ++ +V F+A WC LAP + A + + K+++ +
Sbjct: 2 IHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENPD 60
Query: 143 LAKRWGIQGYPTIYFFVNGVHVD 165
+A R+G+ PT+ FF +G VD
Sbjct: 61 IAARYGVMSLPTVIFFKDGEPVD 83
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIY 156
++ +V FYA WC K +AP + + E GK + KV+ E ELA+ +GIQ PTI+
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIW 110
Query: 157 F 157
F
Sbjct: 111 F 111
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
++L+D +F +D++ + ++V F+A WC K +AP A E +GK +AK++
Sbjct: 5 IHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 142 ELAKRWGIQGYPTIYFFVNG 161
A ++ +G PT+ F NG
Sbjct: 65 GTAPKYIERGIPTLLLFKNG 84
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A + V++ F+A WC K ++P+ +T+ V+ KVD ++A + I PT
Sbjct: 23 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPT 82
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
F NGV V+ + KR+
Sbjct: 83 FVFLKNGVKVEEFAGANAKRL 103
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
+ L+D NF + + V+V F+A WC + +AP + A K +AK++ E
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE 62
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVN 185
++GI PT+ F G V + K Q D++
Sbjct: 63 TTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
+ L+D NF + + V+V F+A WC + +AP + A K +AK++ E
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE 62
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVN 185
++GI PT+ F G V + K Q D++
Sbjct: 63 TTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
V +D++FS ++ V+ F+APWC K +AP + E+ K + K+D E
Sbjct: 4 VKATDQSFSAETSEG-VVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQE 62
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLE 178
A ++G+ PT+ +G V+T + K E
Sbjct: 63 TAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQE 98
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 85 LSDKNFSDV-LAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIEL 143
++D F +V L + V+V F+APWC + +AP A E K K K++ +
Sbjct: 6 VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNV 65
Query: 144 AKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVN 185
A +GI+ PTI F G +T K ++ + +N
Sbjct: 66 ASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN 107
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 70 YNLTPAIDEKENAVNLSDKNFSDVLAKNQHV-MVAFYAPWCFWSKKLAPEYKAAATELKG 128
Y+ P I E L+ K+F + + +V FYAPWC KKL+ ++ AA L G
Sbjct: 13 YDSDPHISE------LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDG 66
Query: 129 KAVLAKV--DAINEIELAKRWGIQGYPTIYFF 158
+A V D L ++ + G+PT+ F
Sbjct: 67 VVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF 98
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 80 ENAVNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI 138
E+ + +SD +F DVL + V+V F+A WC K + P E GK +AKV+
Sbjct: 2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNID 61
Query: 139 NEIELAKRWGIQGYPTIYFFVNGVHVD 165
+ E + ++ PT+ +G +D
Sbjct: 62 DNPETPNAYQVRSIPTLMLVRDGKVID 88
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 84 NLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
+++D +F DVL ++ V+V F+A WC +++AP +A A E K + K++
Sbjct: 9 HVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG 68
Query: 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIV 184
A ++G+ PT+ + G T + K + +D +
Sbjct: 69 TAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 83 VNLSDKNFSDVLAKNQH-VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
+ D +S + ++ V+V FY+P C + K P ++ A E AV +++
Sbjct: 9 IEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNP 68
Query: 142 ELAKRWGIQGYPTIYFFVNGVHV 164
A+++G+QG PT FF +G V
Sbjct: 69 WTAEKYGVQGTPTFKFFCHGRPV 91
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIY 156
++ +V FYA WC K +AP A E G+ V+ KVD E ELA +GI+ P+I
Sbjct: 38 DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSIL 97
Query: 157 F 157
F
Sbjct: 98 F 98
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
V ++D +F D ++ +V F+A WC SK +AP + A + +GKA + K+D
Sbjct: 7 VKVTDADF-DSKVESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPS 65
Query: 143 LAKRWGIQGYPTIYFFVNGVHVD 165
A ++ + PT+ F +G VD
Sbjct: 66 TAAKYEVMSIPTLIVFKDGQPVD 88
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTI 155
K + ++V F+A WC + +AP+ +A A E+ + AKVD E A ++ + PT
Sbjct: 18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTF 76
Query: 156 YFFVNGVHVDTY 167
F +G VD +
Sbjct: 77 VFIKDGKEVDRF 88
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 84 NLSDKNFSDVLAKNQH---VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE 140
+LSD +F L QH +++ F WC KK+ P ++ A++++G A +DA +
Sbjct: 3 SLSDSDFQ--LEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDA 60
Query: 141 IELAKRWGIQGYPTIYFFVNGV 162
+ I+ P++ FV+G+
Sbjct: 61 EKTMAELNIRTLPSLALFVDGM 82
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
V ++D +F D ++ +V F+A WC K +AP + A + +GKA + K+D
Sbjct: 7 VKVTDADF-DSKVESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPS 65
Query: 143 LAKRWGIQGYPTIYFFVNGVHVD 165
A ++ + PT+ F +G VD
Sbjct: 66 TAAKYEVMSIPTLIVFKDGQPVD 88
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
V ++D +F D ++ +V F+A WC K +AP + A + +GKA + K+D
Sbjct: 6 VKVTDADF-DSKVESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPS 64
Query: 143 LAKRWGIQGYPTIYFFVNGVHVD 165
A ++ + PT+ F +G VD
Sbjct: 65 TAAKYEVMSIPTLIVFKDGQPVD 87
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
V ++D +F D ++ +V F+A WC K +AP + A + +GKA + K+D
Sbjct: 7 VKVTDADF-DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPS 65
Query: 143 LAKRWGIQGYPTIYFFVNGVHVD 165
A ++ + PT+ F +G VD
Sbjct: 66 TAAKYEVMSIPTLIVFKDGQPVD 88
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTI 155
KN+ V+V F+A WC K +AP +K + K A+ KVD E A+++ I PT
Sbjct: 32 KNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPTF 89
Query: 156 YFFVNGVHV 164
NG V
Sbjct: 90 IAIKNGEKV 98
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTI 155
KN+ V+V F+A WC K +AP +K + K A+ KVD E A+++ I PT
Sbjct: 23 KNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPTF 80
Query: 156 YFFVNGVHV 164
NG V
Sbjct: 81 IAIKNGEKV 89
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 100 VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159
V++ F A WC + +AP + A + G AV KVD E+A+++ ++ PT F
Sbjct: 39 VIIDFTASWCGPCRFIAPVFAEYAKKFPG-AVFLKVDVDELKEVAEKYNVEAMPTFLFIK 97
Query: 160 NGVHVDTYYHDRKKRVFLEQGDDIVNYI 187
+G D RK DD+ N I
Sbjct: 98 DGAEADKVVGARK--------DDLQNTI 117
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A N+ V++ FYA WC K +AP+ + + + V KVD ++A+ I PT
Sbjct: 18 AGNKLVVIDFYATWCGPCKMIAPKLEELSQSM-SDVVFLKVDVDECEDIAQDNQIACMPT 76
Query: 155 IYFFVNGVHVDT 166
F NG +D+
Sbjct: 77 FLFMKNGQKLDS 88
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 100 VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159
V++ F A WC + +AP + A + G A+ KVD ++A+ + ++ PT F
Sbjct: 31 VIIDFTASWCGPCRVIAPVFAEYAKKFPG-AIFLKVDVDELKDVAEAYNVEAMPTFLFIK 89
Query: 160 NGVHVDTYYHDRKKRV 175
+G VD+ RK +
Sbjct: 90 DGEKVDSVVGGRKDDI 105
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC K + P + + +E + +VD + ++A ++GI+G PT
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVIFLEVDVDDAQDVAPKYGIRGIPT 76
Query: 155 IYFFVNG 161
+ F NG
Sbjct: 77 LLLFKNG 83
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 51 SSRDTVAPLDSYESFKDRKYNLTPAIDEKENAVNLSDKNFSDVLAKNQHVMVAFYAPWCF 110
++ D + PL+ ++ + R + P + ++N N+ + V KN +++ F+A WC
Sbjct: 2 TNDDPLTPLNRFDKYYLRMFKKVPRL--QQNGSNI----INGVNMKNTVIVLYFFAKWCQ 55
Query: 111 WSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVN 160
+ E + L KVD LA+++ ++ PTI N
Sbjct: 56 ACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKN 105
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 90 FSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGI 149
F +A+++ V+V FYA WC SK +AP + +E +A K+D ++A++ +
Sbjct: 17 FDSAIAQDKLVVVDFYATWCGPSKMIAPMIE-KFSEQYPQADFYKLDVDELGDVAQKNEV 75
Query: 150 QGYPTIYFFVNGVHV 164
PT+ F NG V
Sbjct: 76 SAMPTLLLFKNGKEV 90
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 95 AKNQH--VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGY 152
K +H ++VAF A WC K +AP ++ + + GK + KVD +A+ GI
Sbjct: 20 GKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAM 79
Query: 153 PTIYFFVNGVHVD 165
PT + + +GV D
Sbjct: 80 PTFHVYKDGVKAD 92
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
V ++D +F D ++ +V F+A C K +AP + A + +GKA + K+D
Sbjct: 6 VKVTDADF-DSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPS 64
Query: 143 LAKRWGIQGYPTIYFFVNGVHVD 165
A ++ + PT+ F +G VD
Sbjct: 65 TAAKYEVMSIPTLIVFKDGQPVD 87
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 87 DKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKR 146
D+ S+ + V+ F A WC S+++AP Y + L +D + +
Sbjct: 36 DQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLV-IDVDELSDFSAS 94
Query: 147 WGIQGYPTIYFFVNGVHVD 165
W I+ PT +F +G VD
Sbjct: 95 WEIKATPTFFFLRDGQQVD 113
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 89 NFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWG 148
F +A+++ V+V FYA WC K +AP + +E +A K+D ++A++
Sbjct: 10 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIE-KFSEQYPQADFYKLDVDELGDVAQKNE 68
Query: 149 IQGYPTIYFFVNGVHV 164
+ PT+ F NG V
Sbjct: 69 VSAMPTLLLFKNGKEV 84
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 89 NFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWG 148
F +A+++ V+V FYA WC K +AP + +E +A K+D ++A++
Sbjct: 16 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIE-KFSEQYPQADFYKLDVDELGDVAQKNE 74
Query: 149 IQGYPTIYFFVNGVHV 164
+ PT+ F NG V
Sbjct: 75 VSAMPTLLLFKNGKEV 90
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 95 AKNQH--VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGY 152
K +H ++V F A WC K +AP ++ + + GK + KVD +A+ GI
Sbjct: 20 GKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAM 79
Query: 153 PTIYFFVNGVHVD 165
PT + + +GV D
Sbjct: 80 PTFHVYKDGVKAD 92
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 87 DKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKR 146
D+ S+ + V+ F A WC K++AP Y + L +D + +
Sbjct: 36 DQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLV-IDVDELSDFSAS 94
Query: 147 WGIQGYPTIYFFVNGVHVD 165
W I+ PT +F +G VD
Sbjct: 95 WEIKATPTFFFLRDGQQVD 113
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 93 VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKG---KAVLAKVDAINEIELA--KRW 147
VL + V F+A WC + AP +K A ++K LA +D E A + +
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF 85
Query: 148 GIQGYPTIYFF 158
I G+PT+ FF
Sbjct: 86 NIAGFPTVRFF 96
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 93 VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKG---KAVLAKVDAINEIELA--KRW 147
VL V F+A WC AP + A A ++K LA +D E A + +
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 148 GIQGYPTIYFF 158
I G+PT+ FF
Sbjct: 86 NIPGFPTVRFF 96
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141
+ ++D F S+VL Q V+V F+A WC + ++P AA + + K++
Sbjct: 10 ITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP 69
Query: 142 ELAKRWGIQGYPTIYF 157
K++ ++G P +
Sbjct: 70 TTVKKYKVEGVPALRL 85
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 89 NFSDVLAKNQHVMVAFYAPWCFWSKKLA------PE-YKAAATELKGKAVLAKVDAINEI 141
N + V AK + VM+ YA WC SK+ P+ KA A + +A + DA ++
Sbjct: 23 NQALVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLLQANVTANDA-QDV 81
Query: 142 ELAKRWGIQGYPTIYFF 158
L K + G PTI FF
Sbjct: 82 ALLKHLNVLGLPTILFF 98
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 81 NAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE 140
+ V+ ++F + ++V F A WC K +AP + A + L KVD
Sbjct: 10 HTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFL-KVDVDEL 68
Query: 141 IELAKRWGIQGYPTIYFFVNGVHVD 165
+A+ W ++ PT F +G VD
Sbjct: 69 KAVAEEWNVEAMPTFIFLKDGKLVD 93
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC SK + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWCGPSKMIKPFFHSL-SEKYSNVIFLEVDVDDSQDVASESEVKSMPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 100 VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159
V+V F A WC + +AP + A +L + KVD +A W IQ PT F
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQAMPTFMFLK 99
Query: 160 NGVHVDTYYHDRKKRV 175
G +D +K +
Sbjct: 100 EGKILDKVVGAKKDEL 115
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 91 SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQ 150
S + + ++ V+V F+A WC SK +AP + A E A K+D ++A++ +
Sbjct: 13 SALASGDKLVVVDFFATWCGPSKMIAPMIEKFA-EQYSDAAFYKLDVDEVSDVAQKAEVS 71
Query: 151 GYPTIYFFVNGVHV 164
PT+ F+ G V
Sbjct: 72 SMPTLIFYKGGKEV 85
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 91 SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQ 150
S + + ++ V+V F+A WC SK +AP + A E A K+D ++A++ +
Sbjct: 21 SALASGDKLVVVDFFATWCGPSKMIAPMIEKFA-EQYSDAAFYKLDVDEVSDVAQKAEVS 79
Query: 151 GYPTIYFFVNGVHV 164
PT+ F+ G V
Sbjct: 80 SMPTLIFYKGGKEV 93
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC SK + P + + +E + +VD + ++A ++ PT
Sbjct: 29 AGDKLVVVDFSATWCGPSKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASECEVKSMPT 87
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 88 FQFFKKGQKVGEFSGANKEKL 108
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 89 NFSDVLAKNQHVMVAFYAPWCFWSKKLA------PE-YKAAATELKGKAVLAKVDAINEI 141
N + V AK + VM+ YA WC K+ P+ KA A + +A + DA ++
Sbjct: 20 NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDA-QDV 78
Query: 142 ELAKRWGIQGYPTIYFF 158
L K + G PTI FF
Sbjct: 79 ALLKHLNVLGLPTILFF 95
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 89 NFSDVLAKNQHVMVAFYAPWCFWSKKLA------PE-YKAAATELKGKAVLAKVDAINEI 141
N + V AK + VM+ YA WC K+ P+ KA A + +A + DA ++
Sbjct: 23 NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDA-QDV 81
Query: 142 ELAKRWGIQGYPTIYFF 158
L K + G PTI FF
Sbjct: 82 ALLKHLNVLGLPTILFF 98
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 72 LTPAIDEKENAVNLSDKNFSDVLAKNQHVMVAFY----APWCFWSKKLAPEYKAAATEL- 126
L +D NL D+ + +Q V + + P+C + ++A ++ T+
Sbjct: 108 LEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAG 167
Query: 127 KGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQ 179
KGK + V+AI E A ++ + P I VNG + +++FLE+
Sbjct: 168 KGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEK 220
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC SK + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWCGPSKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASECEVKRMPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC +K + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWCGPAKMIKPFFHSL-SEKYSNVIFLEVDVDDAQDVASEAEVKATPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 100 VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159
V++ F A WC S+ +AP + A + AV KVD +A+++ ++ PT F
Sbjct: 40 VVIDFTASWCGPSRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTFLFMK 98
Query: 160 NG 161
G
Sbjct: 99 EG 100
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC K + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASECEVKSMPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 91 SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQ 150
S + + ++ V+V F+A WC K +AP + A E A K+D ++A++ +
Sbjct: 20 SALASGDKLVVVDFFATWCGPCKMIAPMIEKFA-EQYSDAAFYKLDVDEVSDVAQKAEVS 78
Query: 151 GYPTIYFFVNGVHV 164
PT+ F+ G V
Sbjct: 79 SMPTLIFYKGGKEV 92
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 91 SDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQ 150
S + + ++ V+V F+A WC K +AP + A E A K+D ++A++ +
Sbjct: 13 SALASGDKLVVVDFFATWCGPCKMIAPMIEKFA-EQYSDAAFYKLDVDEVSDVAQKAEVS 71
Query: 151 GYPTIYFFVNGVHV 164
PT+ F+ G V
Sbjct: 72 SMPTLIFYKGGKEV 85
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC K + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVIFLEVDVDDAQDVASEAEVKATPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC K + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASESEVKSMPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC K + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASECEVKCMPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC K + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVIFLEVDVNDCQDVASECEVKCMPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC K + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASECEVKCTPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A WC K + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASEXEVKCMPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE-LAKRWGIQGYP 153
A ++ V++ + WC SK +AP+Y+ A E + K+D E + LAK GI+ P
Sbjct: 22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVP 80
Query: 154 T 154
T
Sbjct: 81 T 81
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 86 SDKNFSDVL--AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIEL 143
SD +F L A ++ +V F C ++AP + + + + +AV +VD
Sbjct: 8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGT 66
Query: 144 AKRWGIQGYPTIYFFVNGVHVDTY 167
A I PT FF N V +D Y
Sbjct: 67 AATNNISATPTFQFFRNKVRIDQY 90
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 83 VNLSDKNF-SDVLAKNQHVMVAFYAPWCFWS---KKLAPEYKAAATELKGKA--VLAKVD 136
V L+D+ F S V+ + V V +Y PW S +L + + ++ + V A++D
Sbjct: 18 VELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARID 77
Query: 137 AINEIELAKRWGIQGYPTIYFFV 159
++ +R + G+PT+ ++
Sbjct: 78 GEKYPDVIERMRVSGFPTMRYYT 100
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 100 VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159
V++ F A WC + +AP + A + AV KVD +A+++ ++ PT F
Sbjct: 37 VVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTFLFMK 95
Query: 160 NG 161
G
Sbjct: 96 EG 97
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 100 VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159
++V F+APW ++ A EL + K++A E+++++ I PT FF
Sbjct: 35 LVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 93
Query: 160 NGVHVD 165
N +D
Sbjct: 94 NSQKID 99
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 100 VMVAFYAPWCFWSKKLAPEYKAAATEL-KGKAVLAKVDAINEIELAKRWGIQGYPTIYFF 158
+ V P+C + ++A ++ T+ KGK + V+AI E A ++ + P I
Sbjct: 140 IFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ 199
Query: 159 VNGVHVDTYYHDRKKRVFLEQ 179
VNG + +++FLE+
Sbjct: 200 VNGEDKVQFEGAYPEKMFLEK 220
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE 142
NL++ F +++ +N +++ FYA WC K + P + + K D +
Sbjct: 18 TNLTE--FRNLIKQNDKLVIDFYATWCGPCKMMQP-HLTKLIQAYPDVRFVKCDVDESPD 74
Query: 143 LAKRWGIQGYPTIYFFVNG 161
+AK + PT +G
Sbjct: 75 IAKECEVTAMPTFVLGKDG 93
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 100 VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159
++V F+APW ++ A EL + K++A E+++++ I PT FF
Sbjct: 41 LVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 99
Query: 160 NGVHVD 165
N +D
Sbjct: 100 NSQKID 105
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE-LAKRWGIQGYP 153
A ++ V++ + WC K +AP+Y+ A E + K+D E + LAK GI+ P
Sbjct: 35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVP 93
Query: 154 T 154
T
Sbjct: 94 T 94
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE-LAKRWGIQGYP 153
A ++ V++ + WC K +AP+Y+ A E + K+D E + LAK GI+ P
Sbjct: 23 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVP 81
Query: 154 T 154
T
Sbjct: 82 T 82
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT 154
A ++ V+V F A W SK + P + + +E + +VD + ++A ++ PT
Sbjct: 18 AGDKLVVVDFSATWSGPSKMIKPFFHSL-SEKYSNVIFLEVDVDDCQDVASECEVKCMPT 76
Query: 155 IYFFVNGVHVDTYYHDRKKRV 175
FF G V + K+++
Sbjct: 77 FQFFKKGQKVGEFSGANKEKL 97
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 95 AKNQHVMVAFYA---PWCFWSKKLAPEYKAAATELKGKAVLAKV--DAINEIELAKRWGI 149
A + VMV F++ P+C + L+ + V+A V D ELA+R+ +
Sbjct: 17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRV 76
Query: 150 QGYPTIYFFVNGV----HVDTYYHDRKKRVFLEQ 179
G PT F V V + R + FL++
Sbjct: 77 PGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKE 110
>pdb|2VAF|A Chain A, Crystal Structure Of Human Cardiac Calsequestrin
Length = 378
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 74 PAIDEKENAVNLSDKNFSDVLAKNQHVMVAFYAP 107
P D K+ V+LS+KNF VL K + + ++ P
Sbjct: 5 PTYDGKDRVVSLSEKNFKQVLKKYDLLCLYYHEP 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,663,677
Number of Sequences: 62578
Number of extensions: 226355
Number of successful extensions: 655
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 156
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)