Query 046498
Match_columns 192
No_of_seqs 197 out of 1974
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 12:44:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 4.1E-26 8.9E-31 161.5 11.2 103 83-192 46-149 (150)
2 cd03006 PDI_a_EFP1_N PDIa fami 99.9 9.3E-25 2E-29 151.1 12.8 100 79-186 9-112 (113)
3 cd03065 PDI_b_Calsequestrin_N 99.9 3.7E-24 8E-29 149.2 13.5 103 80-191 10-119 (120)
4 PF00085 Thioredoxin: Thioredo 99.9 8.4E-24 1.8E-28 143.7 14.6 101 83-190 2-103 (103)
5 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.5E-24 5.5E-29 146.4 11.6 97 83-186 4-100 (101)
6 cd02996 PDI_a_ERp44 PDIa famil 99.9 9.4E-24 2E-28 145.4 11.9 101 80-187 2-108 (108)
7 PHA02278 thioredoxin-like prot 99.9 1.5E-23 3.2E-28 142.8 12.5 94 86-186 3-100 (103)
8 cd02954 DIM1 Dim1 family; Dim1 99.9 5.8E-24 1.3E-28 146.2 10.6 85 87-174 2-88 (114)
9 COG3118 Thioredoxin domain-con 99.9 1.3E-23 2.9E-28 163.5 11.6 104 81-192 25-131 (304)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 4E-23 8.6E-28 141.2 11.7 98 83-187 4-104 (104)
11 PRK10996 thioredoxin 2; Provis 99.9 3.2E-22 6.9E-27 143.7 16.4 106 78-191 34-139 (139)
12 cd02994 PDI_a_TMX PDIa family, 99.9 2E-22 4.3E-27 137.0 12.4 99 80-189 2-101 (101)
13 PRK09381 trxA thioredoxin; Pro 99.9 5.8E-22 1.3E-26 136.6 14.1 104 80-191 4-108 (109)
14 cd02985 TRX_CDSP32 TRX family, 99.9 3.9E-22 8.4E-27 136.2 13.0 95 86-189 2-101 (103)
15 PTZ00443 Thioredoxin domain-co 99.9 7.3E-22 1.6E-26 151.6 15.8 105 79-191 30-139 (224)
16 cd02963 TRX_DnaJ TRX domain, D 99.9 3.2E-22 7E-27 138.4 12.2 101 83-190 7-111 (111)
17 cd03005 PDI_a_ERp46 PDIa famil 99.9 3.7E-22 8E-27 135.6 11.9 97 83-187 3-102 (102)
18 cd02956 ybbN ybbN protein fami 99.9 4.8E-22 1E-26 133.8 12.2 93 89-188 2-96 (96)
19 cd02948 TRX_NDPK TRX domain, T 99.9 7.9E-22 1.7E-26 134.5 13.2 97 85-190 5-102 (102)
20 cd02965 HyaE HyaE family; HyaE 99.9 5E-22 1.1E-26 135.8 11.8 96 83-185 13-110 (111)
21 PLN00410 U5 snRNP protein, DIM 99.9 8.4E-22 1.8E-26 140.5 13.2 99 86-191 10-120 (142)
22 KOG0907 Thioredoxin [Posttrans 99.9 6.1E-22 1.3E-26 135.1 11.7 85 97-190 21-105 (106)
23 cd03002 PDI_a_MPD1_like PDI fa 99.9 6.5E-22 1.4E-26 136.1 11.8 100 83-188 3-109 (109)
24 cd03001 PDI_a_P5 PDIa family, 99.9 1.3E-21 2.8E-26 133.2 12.6 99 83-187 3-102 (103)
25 cd02997 PDI_a_PDIR PDIa family 99.9 1.6E-21 3.5E-26 132.8 12.3 98 83-187 3-104 (104)
26 TIGR01126 pdi_dom protein disu 99.9 1.9E-21 4.1E-26 131.9 11.8 100 85-191 1-102 (102)
27 cd02999 PDI_a_ERp44_like PDIa 99.9 1.5E-21 3.3E-26 132.6 10.7 84 95-187 16-100 (100)
28 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1.4E-20 3E-25 130.6 14.1 103 80-187 5-112 (113)
29 PTZ00102 disulphide isomerase; 99.9 1.3E-20 2.9E-25 160.2 17.0 104 80-192 33-139 (477)
30 cd02986 DLP Dim1 family, Dim1- 99.9 7.9E-21 1.7E-25 129.8 11.4 99 88-189 3-109 (114)
31 cd02962 TMX2 TMX2 family; comp 99.9 3.5E-20 7.6E-25 134.4 15.3 87 80-167 29-124 (152)
32 cd02957 Phd_like Phosducin (Ph 99.9 1.2E-20 2.7E-25 130.9 12.2 103 79-187 4-112 (113)
33 cd02993 PDI_a_APS_reductase PD 99.9 1.2E-20 2.6E-25 130.1 11.4 101 80-187 2-109 (109)
34 cd02950 TxlA TRX-like protein 99.8 2E-20 4.3E-25 134.8 12.4 99 86-191 9-110 (142)
35 TIGR01068 thioredoxin thioredo 99.8 4.4E-20 9.6E-25 124.7 13.1 100 85-191 1-101 (101)
36 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.9E-20 4.2E-25 127.6 10.6 99 83-187 3-105 (105)
37 KOG0190 Protein disulfide isom 99.8 7.4E-21 1.6E-25 158.6 9.9 108 77-192 23-133 (493)
38 cd03000 PDI_a_TMX3 PDIa family 99.8 3.6E-20 7.9E-25 126.6 11.7 94 88-190 7-103 (104)
39 cd02984 TRX_PICOT TRX domain, 99.8 4.5E-20 9.7E-25 124.3 11.8 94 86-187 1-96 (97)
40 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 5.4E-20 1.2E-24 125.2 10.7 98 83-187 3-104 (104)
41 cd02953 DsbDgamma DsbD gamma f 99.8 3.7E-20 8E-25 126.5 9.7 94 88-188 2-104 (104)
42 cd02961 PDI_a_family Protein D 99.8 6.9E-20 1.5E-24 123.3 10.4 97 84-187 2-101 (101)
43 cd02949 TRX_NTR TRX domain, no 99.8 1.6E-19 3.5E-24 121.9 11.7 89 93-188 9-97 (97)
44 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.1E-19 2.5E-24 125.3 10.1 98 83-190 4-115 (116)
45 PTZ00051 thioredoxin; Provisio 99.8 2.9E-19 6.3E-24 120.6 11.7 91 86-185 7-97 (98)
46 cd02987 Phd_like_Phd Phosducin 99.8 5.5E-19 1.2E-23 131.4 13.2 107 78-190 61-174 (175)
47 cd02975 PfPDO_like_N Pyrococcu 99.8 4.6E-19 1E-23 122.9 11.1 96 90-191 15-110 (113)
48 PTZ00102 disulphide isomerase; 99.8 7.1E-19 1.5E-23 149.7 13.0 114 71-191 349-465 (477)
49 TIGR00424 APS_reduc 5'-adenyly 99.8 1E-18 2.2E-23 146.4 13.1 108 76-190 348-462 (463)
50 KOG0908 Thioredoxin-like prote 99.8 7.3E-19 1.6E-23 133.3 10.6 97 86-191 8-106 (288)
51 TIGR01130 ER_PDI_fam protein d 99.8 1.4E-18 3.1E-23 146.9 13.6 103 83-192 4-110 (462)
52 TIGR01295 PedC_BrcD bacterioci 99.8 3.1E-18 6.7E-23 120.2 12.7 97 83-188 9-121 (122)
53 PLN02309 5'-adenylylsulfate re 99.8 2E-18 4.4E-23 144.5 13.2 108 76-190 342-456 (457)
54 cd02951 SoxW SoxW family; SoxW 99.8 3.5E-18 7.5E-23 120.5 11.9 97 88-191 4-119 (125)
55 cd02992 PDI_a_QSOX PDIa family 99.8 5.2E-18 1.1E-22 117.8 11.2 82 83-164 4-91 (114)
56 cd02947 TRX_family TRX family; 99.8 1.3E-17 2.8E-22 110.1 11.9 91 89-187 2-92 (93)
57 KOG0912 Thiol-disulfide isomer 99.7 1.3E-17 2.9E-22 129.8 8.5 100 86-191 2-106 (375)
58 KOG0190 Protein disulfide isom 99.7 8.8E-18 1.9E-22 140.3 8.0 114 68-190 354-472 (493)
59 cd02988 Phd_like_VIAF Phosduci 99.7 9.3E-17 2E-21 121.0 12.5 105 77-189 80-190 (192)
60 cd02952 TRP14_like Human TRX-r 99.7 7.5E-17 1.6E-21 112.1 10.3 80 86-165 8-104 (119)
61 cd02959 ERp19 Endoplasmic reti 99.7 2.2E-17 4.7E-22 115.2 6.8 100 87-190 9-112 (117)
62 PRK15412 thiol:disulfide inter 99.7 9.5E-16 2.1E-20 115.2 15.5 87 95-191 66-176 (185)
63 cd02982 PDI_b'_family Protein 99.7 2.2E-16 4.7E-21 107.4 10.7 89 96-191 11-103 (103)
64 PTZ00062 glutaredoxin; Provisi 99.7 4E-16 8.7E-21 118.1 11.9 90 86-192 5-95 (204)
65 TIGR00411 redox_disulf_1 small 99.7 7.3E-16 1.6E-20 100.4 10.9 81 100-191 2-82 (82)
66 TIGR01130 ER_PDI_fam protein d 99.7 3.4E-16 7.3E-21 132.4 11.6 113 70-191 337-454 (462)
67 KOG4277 Uncharacterized conser 99.7 1.4E-16 3E-21 124.3 6.5 87 96-190 42-131 (468)
68 PRK03147 thiol-disulfide oxido 99.7 4.5E-15 9.9E-20 110.0 13.6 101 83-190 47-171 (173)
69 TIGR02738 TrbB type-F conjugat 99.7 2.2E-15 4.8E-20 109.5 11.6 87 97-191 50-153 (153)
70 PRK14018 trifunctional thiored 99.6 3.5E-15 7.6E-20 126.7 14.1 88 95-189 54-171 (521)
71 PRK13728 conjugal transfer pro 99.6 2E-14 4.3E-19 106.6 14.8 83 101-191 73-171 (181)
72 TIGR02187 GlrX_arch Glutaredox 99.6 3.3E-15 7.1E-20 114.9 10.6 94 91-191 14-111 (215)
73 cd02955 SSP411 TRX domain, SSP 99.6 1.1E-14 2.4E-19 102.2 10.4 81 86-166 4-96 (124)
74 TIGR00385 dsbE periplasmic pro 99.6 2E-14 4.3E-19 106.9 12.2 89 94-192 60-172 (173)
75 cd03008 TryX_like_RdCVF Trypar 99.6 6.9E-15 1.5E-19 105.9 9.3 70 96-165 24-127 (146)
76 PRK00293 dipZ thiol:disulfide 99.6 1.2E-14 2.5E-19 126.1 11.9 100 86-191 459-570 (571)
77 TIGR02740 TraF-like TraF-like 99.6 2.5E-14 5.5E-19 113.3 11.8 86 97-190 166-263 (271)
78 PF13098 Thioredoxin_2: Thiore 99.6 1.2E-14 2.5E-19 100.3 7.5 86 95-187 3-112 (112)
79 TIGR02187 GlrX_arch Glutaredox 99.6 5.6E-14 1.2E-18 108.0 11.7 95 84-189 119-214 (215)
80 TIGR00412 redox_disulf_2 small 99.5 4.7E-14 1E-18 90.9 9.0 73 101-187 2-75 (76)
81 KOG0191 Thioredoxin/protein di 99.5 3.4E-14 7.4E-19 118.1 10.5 97 87-191 37-134 (383)
82 cd03010 TlpA_like_DsbE TlpA-li 99.5 9.2E-14 2E-18 98.0 10.9 79 96-183 24-126 (127)
83 PRK11509 hydrogenase-1 operon 99.5 2.2E-13 4.8E-18 95.8 12.5 103 83-192 20-125 (132)
84 PHA02125 thioredoxin-like prot 99.5 1.1E-13 2.5E-18 88.8 10.2 72 101-187 2-73 (75)
85 KOG1731 FAD-dependent sulfhydr 99.5 1.5E-14 3.2E-19 121.3 7.5 105 79-190 39-152 (606)
86 cd03009 TryX_like_TryX_NRX Try 99.5 5E-14 1.1E-18 99.9 9.3 71 96-166 17-115 (131)
87 PF13905 Thioredoxin_8: Thiore 99.5 8.2E-14 1.8E-18 93.3 9.6 66 97-162 1-94 (95)
88 cd02964 TryX_like_family Trypa 99.5 1.3E-13 2.8E-18 98.0 9.0 70 96-165 16-114 (132)
89 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 2.8E-13 6.1E-18 94.9 9.8 94 84-186 7-121 (123)
90 PLN02919 haloacid dehalogenase 99.5 2.5E-13 5.4E-18 125.0 11.5 89 96-191 419-536 (1057)
91 TIGR01626 ytfJ_HI0045 conserve 99.5 1.2E-12 2.6E-17 97.6 12.3 84 96-186 58-175 (184)
92 cd02973 TRX_GRX_like Thioredox 99.4 9.5E-13 2.1E-17 82.5 7.9 61 101-164 3-63 (67)
93 cd02958 UAS UAS family; UAS is 99.4 6.8E-12 1.5E-16 87.0 12.0 96 89-191 9-111 (114)
94 PTZ00056 glutathione peroxidas 99.4 2.7E-12 5.9E-17 97.5 10.4 89 96-191 38-178 (199)
95 cd02967 mauD Methylamine utili 99.4 3E-12 6.4E-17 88.4 9.1 70 96-165 20-110 (114)
96 PLN02399 phospholipid hydroper 99.4 4.6E-12 9.9E-17 98.2 11.0 90 96-192 98-235 (236)
97 cd02966 TlpA_like_family TlpA- 99.4 3.9E-12 8.4E-17 86.9 8.9 71 96-166 18-113 (116)
98 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 6.3E-12 1.4E-16 83.3 9.4 75 98-184 13-87 (89)
99 PF08534 Redoxin: Redoxin; In 99.4 3E-12 6.4E-17 92.4 8.5 77 95-174 26-135 (146)
100 COG4232 Thiol:disulfide interc 99.4 9.1E-12 2E-16 105.6 12.1 96 88-191 463-568 (569)
101 cd03012 TlpA_like_DipZ_like Tl 99.4 5.8E-12 1.3E-16 88.8 9.0 71 96-166 22-121 (126)
102 KOG0191 Thioredoxin/protein di 99.3 6.1E-12 1.3E-16 104.6 9.9 105 80-191 145-252 (383)
103 TIGR02661 MauD methylamine deh 99.3 2.2E-11 4.7E-16 91.8 11.9 87 95-189 72-177 (189)
104 PLN02412 probable glutathione 99.3 2.6E-11 5.7E-16 89.7 10.9 90 96-192 28-165 (167)
105 PF13899 Thioredoxin_7: Thiore 99.3 1.9E-11 4.1E-16 79.8 7.8 71 88-159 8-81 (82)
106 TIGR02540 gpx7 putative glutat 99.3 8.8E-11 1.9E-15 85.5 10.6 89 96-191 21-153 (153)
107 cd02960 AGR Anterior Gradient 99.2 2.7E-11 5.9E-16 85.2 7.2 83 88-174 14-100 (130)
108 smart00594 UAS UAS domain. 99.2 3.1E-10 6.7E-15 79.6 12.4 96 88-187 18-121 (122)
109 cd00340 GSH_Peroxidase Glutath 99.2 1E-10 2.3E-15 85.1 9.4 83 96-186 21-151 (152)
110 KOG0914 Thioredoxin-like prote 99.2 5.3E-11 1.2E-15 89.1 7.8 84 83-166 127-220 (265)
111 cd02969 PRX_like1 Peroxiredoxi 99.2 7.2E-10 1.6E-14 82.1 11.7 91 96-191 24-152 (171)
112 PF01216 Calsequestrin: Calseq 99.1 1.6E-09 3.4E-14 86.6 12.6 110 73-191 27-144 (383)
113 PTZ00256 glutathione peroxidas 99.1 7.8E-10 1.7E-14 82.9 9.2 90 96-192 39-182 (183)
114 COG0526 TrxA Thiol-disulfide i 99.1 1E-09 2.3E-14 74.5 8.8 69 97-165 32-103 (127)
115 cd03017 PRX_BCP Peroxiredoxin 99.0 1.8E-09 3.9E-14 77.1 8.7 85 96-187 22-139 (140)
116 COG2143 Thioredoxin-related pr 99.0 1.2E-08 2.6E-13 72.9 12.4 92 90-188 35-146 (182)
117 KOG0913 Thiol-disulfide isomer 99.0 6.3E-11 1.4E-15 89.7 1.0 97 83-189 27-124 (248)
118 KOG2501 Thioredoxin, nucleored 99.0 9E-10 2E-14 79.2 6.7 71 96-166 32-131 (157)
119 PRK00522 tpx lipid hydroperoxi 99.0 6.9E-09 1.5E-13 76.7 10.9 70 96-166 43-146 (167)
120 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 5.8E-09 1.3E-13 72.8 8.8 69 96-164 24-121 (124)
121 cd02970 PRX_like2 Peroxiredoxi 98.9 9.4E-09 2E-13 74.0 9.4 43 97-139 24-67 (149)
122 PF02114 Phosducin: Phosducin; 98.9 9.5E-09 2.1E-13 81.1 9.8 110 78-190 124-237 (265)
123 TIGR02196 GlrX_YruB Glutaredox 98.9 1.2E-08 2.5E-13 64.4 8.5 68 101-187 2-73 (74)
124 cd03015 PRX_Typ2cys Peroxiredo 98.9 1.4E-08 3E-13 75.5 10.0 92 96-190 28-156 (173)
125 TIGR03137 AhpC peroxiredoxin. 98.9 1.6E-08 3.4E-13 76.2 10.4 89 96-189 30-154 (187)
126 PRK09437 bcp thioredoxin-depen 98.9 1.9E-08 4.1E-13 73.1 10.5 76 96-174 29-140 (154)
127 cd03014 PRX_Atyp2cys Peroxired 98.9 1.6E-08 3.5E-13 72.6 9.9 71 96-167 25-126 (143)
128 PF03190 Thioredox_DsbH: Prote 98.9 8.9E-09 1.9E-13 75.0 8.0 81 85-165 25-117 (163)
129 TIGR02200 GlrX_actino Glutared 98.9 7.8E-09 1.7E-13 66.1 6.7 58 101-165 2-64 (77)
130 cd01659 TRX_superfamily Thiore 98.9 1.4E-08 3E-13 61.3 7.5 60 101-161 1-63 (69)
131 PF13728 TraF: F plasmid trans 98.8 1E-07 2.3E-12 73.2 11.7 82 97-187 120-214 (215)
132 PF14595 Thioredoxin_9: Thiore 98.8 4.2E-08 9.1E-13 69.4 8.5 95 85-189 28-127 (129)
133 PRK10606 btuE putative glutath 98.8 4.3E-08 9.2E-13 73.4 8.9 42 96-138 24-66 (183)
134 PF13192 Thioredoxin_3: Thiore 98.8 1.1E-07 2.3E-12 61.1 9.4 72 103-188 4-76 (76)
135 PRK10382 alkyl hydroperoxide r 98.8 1.1E-07 2.5E-12 71.4 10.7 90 96-189 30-154 (187)
136 cd03018 PRX_AhpE_like Peroxire 98.8 9.8E-08 2.1E-12 68.8 9.8 87 98-187 29-147 (149)
137 PRK13190 putative peroxiredoxi 98.7 9.2E-08 2E-12 72.9 9.7 91 96-190 26-153 (202)
138 PF06110 DUF953: Eukaryotic pr 98.7 9.7E-08 2.1E-12 66.3 8.5 76 88-163 6-101 (119)
139 PRK11200 grxA glutaredoxin 1; 98.7 2E-07 4.2E-12 61.1 9.5 77 100-192 2-84 (85)
140 PRK15000 peroxidase; Provision 98.7 1.7E-07 3.7E-12 71.3 10.5 91 96-189 33-160 (200)
141 PF13848 Thioredoxin_6: Thiore 98.7 9.6E-07 2.1E-11 65.6 13.1 103 80-189 78-184 (184)
142 KOG1672 ATP binding protein [P 98.7 8.5E-08 1.8E-12 70.9 6.9 81 86-167 73-153 (211)
143 TIGR02180 GRX_euk Glutaredoxin 98.7 1.4E-07 3.1E-12 61.2 7.3 61 101-165 1-66 (84)
144 cd02971 PRX_family Peroxiredox 98.7 1.3E-07 2.8E-12 67.4 7.6 76 96-174 21-130 (140)
145 PTZ00137 2-Cys peroxiredoxin; 98.6 6E-07 1.3E-11 70.7 11.3 90 96-189 97-223 (261)
146 PRK13599 putative peroxiredoxi 98.6 5.9E-07 1.3E-11 69.0 11.0 91 96-190 27-155 (215)
147 cd02968 SCO SCO (an acronym fo 98.6 1.3E-07 2.9E-12 67.5 7.0 43 96-138 21-68 (142)
148 cd02991 UAS_ETEA UAS family, E 98.6 1E-06 2.2E-11 61.2 10.9 91 91-191 11-113 (116)
149 KOG2603 Oligosaccharyltransfer 98.6 4.1E-07 8.9E-12 71.9 9.4 116 73-191 34-166 (331)
150 TIGR02739 TraF type-F conjugat 98.6 1.4E-06 2.9E-11 68.4 12.2 85 97-190 150-247 (256)
151 PF07449 HyaE: Hydrogenase-1 e 98.6 6.9E-07 1.5E-11 60.7 8.7 92 83-182 12-106 (107)
152 cd03016 PRX_1cys Peroxiredoxin 98.6 9E-07 2E-11 67.5 10.2 89 99-190 28-153 (203)
153 KOG3425 Uncharacterized conser 98.5 4.5E-07 9.8E-12 61.9 7.3 73 88-160 13-104 (128)
154 PRK13189 peroxiredoxin; Provis 98.5 1.3E-06 2.9E-11 67.4 10.4 91 96-190 34-162 (222)
155 PRK13191 putative peroxiredoxi 98.5 1.6E-06 3.5E-11 66.6 10.2 92 96-190 32-160 (215)
156 KOG3414 Component of the U4/U6 98.5 2.5E-06 5.5E-11 58.8 9.8 100 87-189 11-118 (142)
157 cd03072 PDI_b'_ERp44 PDIb' fam 98.5 3.3E-06 7.1E-11 58.2 10.2 101 83-191 2-108 (111)
158 PRK13703 conjugal pilus assemb 98.5 3.1E-06 6.8E-11 66.0 11.0 84 97-189 143-239 (248)
159 PTZ00253 tryparedoxin peroxida 98.5 3.1E-06 6.8E-11 64.3 10.8 91 96-189 35-162 (199)
160 PF07912 ERp29_N: ERp29, N-ter 98.4 8.1E-06 1.8E-10 56.3 11.2 104 83-192 7-120 (126)
161 PRK10877 protein disulfide iso 98.4 2.8E-06 6.1E-11 66.1 10.2 80 97-190 107-230 (232)
162 cd02976 NrdH NrdH-redoxin (Nrd 98.4 3.2E-06 6.9E-11 52.9 8.7 68 101-187 2-73 (73)
163 KOG0911 Glutaredoxin-related p 98.4 3.1E-07 6.7E-12 69.5 3.6 78 93-174 13-90 (227)
164 TIGR02183 GRXA Glutaredoxin, G 98.3 5.9E-06 1.3E-10 54.2 8.6 76 101-192 2-83 (86)
165 cd03020 DsbA_DsbC_DsbG DsbA fa 98.3 4.5E-06 9.7E-11 63.3 8.4 76 97-187 77-197 (197)
166 TIGR03143 AhpF_homolog putativ 98.3 8.4E-06 1.8E-10 71.2 11.1 92 84-187 462-554 (555)
167 cd02981 PDI_b_family Protein D 98.2 1.9E-05 4.1E-10 52.6 9.7 90 87-189 7-96 (97)
168 PF02966 DIM1: Mitosis protein 98.2 3.2E-05 6.9E-10 54.0 10.9 99 87-189 8-115 (133)
169 PF11009 DUF2847: Protein of u 98.2 4.8E-05 1E-09 51.5 11.4 92 86-183 6-104 (105)
170 PRK15317 alkyl hydroperoxide r 98.2 1.5E-05 3.2E-10 69.1 10.8 95 83-189 101-196 (517)
171 cd03023 DsbA_Com1_like DsbA fa 98.1 2.4E-05 5.2E-10 56.2 9.2 32 97-128 5-36 (154)
172 PF00462 Glutaredoxin: Glutare 98.1 2.7E-05 5.9E-10 47.3 8.0 56 101-164 1-60 (60)
173 PF13462 Thioredoxin_4: Thiore 98.1 9E-05 1.9E-09 53.8 11.7 81 97-189 12-162 (162)
174 cd02983 P5_C P5 family, C-term 98.1 0.00013 2.7E-09 51.7 11.9 102 83-191 5-115 (130)
175 cd03419 GRX_GRXh_1_2_like Glut 98.1 2.3E-05 5E-10 50.5 7.3 59 101-165 2-65 (82)
176 TIGR03140 AhpF alkyl hydropero 98.0 7.6E-05 1.6E-09 64.7 11.1 96 83-190 102-198 (515)
177 TIGR02190 GlrX-dom Glutaredoxi 98.0 9.8E-05 2.1E-09 47.5 8.8 58 99-164 8-68 (79)
178 cd02066 GRX_family Glutaredoxi 98.0 5.1E-05 1.1E-09 47.1 7.4 57 101-165 2-62 (72)
179 TIGR02194 GlrX_NrdH Glutaredox 98.0 7E-05 1.5E-09 47.2 7.7 66 102-185 2-70 (72)
180 PRK11657 dsbG disulfide isomer 98.0 9.8E-05 2.1E-09 58.1 9.9 82 97-188 117-249 (251)
181 PRK10329 glutaredoxin-like pro 97.9 0.00024 5.2E-09 46.0 10.1 71 101-190 3-76 (81)
182 PF05768 DUF836: Glutaredoxin- 97.9 0.0001 2.3E-09 47.7 8.3 76 101-188 2-81 (81)
183 cd03073 PDI_b'_ERp72_ERp57 PDI 97.9 0.00019 4.1E-09 49.4 9.5 99 83-190 2-110 (111)
184 PHA03050 glutaredoxin; Provisi 97.8 0.00016 3.5E-09 49.5 8.1 69 90-165 6-81 (108)
185 cd03019 DsbA_DsbA DsbA family, 97.7 0.00052 1.1E-08 50.6 9.6 38 96-133 14-51 (178)
186 cd03029 GRX_hybridPRX5 Glutare 97.7 0.00074 1.6E-08 42.4 8.7 56 101-164 3-61 (72)
187 cd03418 GRX_GRXb_1_3_like Glut 97.7 0.00072 1.6E-08 42.6 8.7 57 101-165 2-63 (75)
188 TIGR02181 GRX_bact Glutaredoxi 97.6 0.00041 9E-09 44.4 7.4 57 101-165 1-61 (79)
189 TIGR03143 AhpF_homolog putativ 97.6 0.00062 1.3E-08 59.6 10.4 95 90-191 357-454 (555)
190 TIGR02189 GlrX-like_plant Glut 97.6 0.00046 9.9E-09 46.5 7.0 57 101-165 10-73 (99)
191 PF00837 T4_deiodinase: Iodoth 97.5 0.0022 4.7E-08 49.6 10.5 60 78-138 81-143 (237)
192 cd03027 GRX_DEP Glutaredoxin ( 97.5 0.0013 2.9E-08 41.4 7.9 57 101-165 3-63 (73)
193 cd03067 PDI_b_PDIR_N PDIb fami 97.4 0.002 4.3E-08 43.0 8.4 95 87-189 9-110 (112)
194 KOG3171 Conserved phosducin-li 97.4 0.00034 7.4E-09 52.9 5.0 109 78-189 137-249 (273)
195 cd02972 DsbA_family DsbA famil 97.4 0.00076 1.6E-08 44.1 6.3 59 101-159 1-91 (98)
196 PRK10954 periplasmic protein d 97.4 0.0025 5.3E-08 48.7 9.6 40 97-136 37-79 (207)
197 PF13848 Thioredoxin_6: Thiore 97.3 0.0017 3.6E-08 48.1 8.5 64 115-190 8-74 (184)
198 COG1331 Highly conserved prote 97.2 0.00093 2E-08 58.6 6.8 82 83-164 29-122 (667)
199 COG1225 Bcp Peroxiredoxin [Pos 97.2 0.0092 2E-07 43.5 10.6 92 95-190 28-155 (157)
200 TIGR00365 monothiol glutaredox 97.1 0.0037 8.1E-08 41.8 7.7 68 89-165 4-79 (97)
201 PRK10638 glutaredoxin 3; Provi 97.1 0.0042 9.1E-08 40.1 7.7 57 101-165 4-64 (83)
202 COG0695 GrxC Glutaredoxin and 97.0 0.0027 5.9E-08 40.9 6.0 57 101-165 3-65 (80)
203 cd03028 GRX_PICOT_like Glutare 97.0 0.0058 1.3E-07 40.2 7.7 51 107-165 21-75 (90)
204 KOG3170 Conserved phosducin-li 97.0 0.0052 1.1E-07 46.1 8.1 105 77-189 89-199 (240)
205 cd03069 PDI_b_ERp57 PDIb famil 97.0 0.016 3.6E-07 39.1 9.9 91 86-190 7-103 (104)
206 PF13743 Thioredoxin_5: Thiore 96.8 0.0068 1.5E-07 45.1 7.6 32 103-134 2-33 (176)
207 KOG2640 Thioredoxin [Function 96.7 0.00055 1.2E-08 54.5 0.7 86 97-191 76-162 (319)
208 KOG1752 Glutaredoxin and relat 96.5 0.025 5.4E-07 38.4 7.7 69 89-165 6-79 (104)
209 PRK12759 bifunctional gluaredo 96.3 0.019 4E-07 48.5 7.5 57 101-165 4-72 (410)
210 cd03066 PDI_b_Calsequestrin_mi 96.2 0.2 4.3E-06 33.6 10.9 96 83-190 3-100 (102)
211 PRK10824 glutaredoxin-4; Provi 96.2 0.036 7.9E-07 38.3 7.2 67 89-165 7-82 (115)
212 PTZ00062 glutaredoxin; Provisi 96.0 0.04 8.6E-07 42.0 7.4 66 90-165 106-180 (204)
213 cd03013 PRX5_like Peroxiredoxi 96.0 0.026 5.6E-07 41.1 6.0 44 95-138 28-74 (155)
214 COG1999 Uncharacterized protei 95.4 0.65 1.4E-05 35.5 12.2 99 86-191 56-204 (207)
215 cd03068 PDI_b_ERp72 PDIb famil 95.1 0.56 1.2E-05 31.8 9.9 90 86-190 7-107 (107)
216 COG0386 BtuE Glutathione perox 95.1 0.36 7.9E-06 34.9 9.0 102 83-192 11-161 (162)
217 PF01323 DSBA: DSBA-like thior 94.7 0.58 1.3E-05 34.6 10.1 28 101-128 2-29 (193)
218 cd02978 KaiB_like KaiB-like fa 94.3 0.22 4.7E-06 31.4 5.7 59 100-158 3-62 (72)
219 cd02974 AhpF_NTD_N Alkyl hydro 94.1 1.1 2.3E-05 29.8 9.5 74 98-190 19-93 (94)
220 cd03040 GST_N_mPGES2 GST_N fam 93.9 0.44 9.5E-06 29.8 6.8 74 101-192 2-77 (77)
221 cd03031 GRX_GRX_like Glutaredo 93.7 0.36 7.8E-06 34.9 6.6 57 101-165 2-72 (147)
222 COG1651 DsbG Protein-disulfide 93.6 0.82 1.8E-05 35.5 9.1 38 142-191 206-243 (244)
223 PRK15317 alkyl hydroperoxide r 93.1 0.98 2.1E-05 39.3 9.7 84 90-191 10-94 (517)
224 TIGR02654 circ_KaiB circadian 92.7 0.46 9.9E-06 31.0 5.3 64 98-161 3-67 (87)
225 PRK09301 circadian clock prote 92.4 0.49 1.1E-05 31.9 5.3 65 97-161 5-70 (103)
226 COG2761 FrnE Predicted dithiol 92.1 0.33 7.2E-06 37.5 4.8 40 142-192 175-214 (225)
227 TIGR03140 AhpF alkyl hydropero 92.0 1.7 3.7E-05 37.8 9.7 85 90-191 10-95 (515)
228 COG4545 Glutaredoxin-related p 91.6 0.59 1.3E-05 29.5 4.6 57 102-165 5-77 (85)
229 PHA03075 glutaredoxin-like pro 91.2 0.46 1E-05 32.6 4.2 36 98-137 2-37 (123)
230 COG3019 Predicted metal-bindin 91.0 2.6 5.7E-05 30.0 7.9 73 101-189 28-102 (149)
231 TIGR02742 TrbC_Ftype type-F co 90.5 0.67 1.5E-05 32.7 4.7 42 140-188 60-112 (130)
232 cd03037 GST_N_GRX2 GST_N famil 90.4 1.3 2.9E-05 27.1 5.6 55 103-162 3-57 (71)
233 cd03041 GST_N_2GST_N GST_N fam 90.2 3.1 6.8E-05 26.0 8.0 71 101-190 2-76 (77)
234 cd03060 GST_N_Omega_like GST_N 89.2 1.4 3.1E-05 27.0 5.1 58 102-164 2-60 (71)
235 PF13417 GST_N_3: Glutathione 88.1 4.5 9.7E-05 25.1 8.3 70 103-191 1-71 (75)
236 COG3531 Predicted protein-disu 87.4 1.5 3.3E-05 33.1 4.9 44 141-191 164-209 (212)
237 cd02990 UAS_FAF1 UAS family, F 86.7 9.3 0.0002 27.2 11.5 87 94-190 18-132 (136)
238 PF09673 TrbC_Ftype: Type-F co 86.1 2.5 5.4E-05 29.0 5.2 22 139-160 59-80 (113)
239 PF00255 GSHPx: Glutathione pe 85.8 1.8 4E-05 29.5 4.3 44 95-139 19-63 (108)
240 cd03051 GST_N_GTT2_like GST_N 85.6 1.2 2.7E-05 27.1 3.3 52 102-157 2-57 (74)
241 TIGR01617 arsC_related transcr 85.4 2.2 4.7E-05 29.3 4.7 34 102-141 2-35 (117)
242 cd03024 DsbA_FrnE DsbA family, 85.2 1.4 3E-05 33.0 3.9 37 140-187 164-200 (201)
243 cd03059 GST_N_SspA GST_N famil 85.0 4.7 0.0001 24.5 5.7 51 102-156 2-53 (73)
244 KOG2792 Putative cytochrome C 84.9 8.2 0.00018 30.5 8.0 88 96-191 138-275 (280)
245 cd02977 ArsC_family Arsenate R 84.0 1.1 2.4E-05 30.1 2.6 79 102-190 2-86 (105)
246 PF02630 SCO1-SenC: SCO1/SenC; 83.8 3.2 7E-05 30.6 5.3 44 95-138 50-97 (174)
247 PHA02291 hypothetical protein 83.8 1.2 2.5E-05 30.1 2.5 24 1-24 1-24 (132)
248 PRK01655 spxA transcriptional 83.7 2.7 5.9E-05 29.6 4.6 34 101-140 2-35 (131)
249 PF07689 KaiB: KaiB domain; I 83.5 0.44 9.6E-06 30.8 0.5 53 104-156 3-56 (82)
250 PF06491 Disulph_isomer: Disul 82.7 12 0.00026 26.4 7.3 99 85-190 22-131 (136)
251 cd03035 ArsC_Yffb Arsenate Red 82.6 1.3 2.9E-05 29.9 2.6 33 102-140 2-34 (105)
252 COG0450 AhpC Peroxiredoxin [Po 82.3 19 0.00042 27.2 9.8 89 98-190 34-160 (194)
253 KOG2507 Ubiquitin regulatory p 81.9 13 0.00028 31.6 8.4 86 96-190 17-110 (506)
254 cd00570 GST_N_family Glutathio 81.3 2.7 5.8E-05 24.7 3.5 51 103-157 3-55 (71)
255 PF06053 DUF929: Domain of unk 80.4 5 0.00011 31.6 5.4 60 93-159 54-113 (249)
256 KOG2244 Highly conserved prote 79.1 2.1 4.6E-05 37.4 3.1 75 85-159 100-185 (786)
257 cd03036 ArsC_like Arsenate Red 78.5 2.3 4.9E-05 29.0 2.7 81 102-190 2-87 (111)
258 cd03022 DsbA_HCCA_Iso DsbA fam 77.6 3 6.5E-05 30.7 3.4 35 141-187 157-191 (192)
259 PF09822 ABC_transp_aux: ABC-t 76.0 37 0.00079 26.8 13.3 69 83-151 10-88 (271)
260 KOG0855 Alkyl hydroperoxide re 76.0 19 0.00042 26.6 6.9 24 138-161 154-184 (211)
261 cd03045 GST_N_Delta_Epsilon GS 75.5 3 6.4E-05 25.5 2.4 51 102-156 2-56 (74)
262 PF08806 Sep15_SelM: Sep15/Sel 74.1 5.4 0.00012 25.4 3.3 35 151-191 41-76 (78)
263 PF07172 GRP: Glycine rich pro 73.1 4 8.7E-05 27.1 2.7 11 1-11 1-11 (95)
264 COG3634 AhpF Alkyl hydroperoxi 72.7 17 0.00036 30.5 6.5 80 97-188 116-195 (520)
265 PRK12559 transcriptional regul 71.3 5.3 0.00012 28.1 3.1 21 101-121 2-22 (131)
266 cd03032 ArsC_Spx Arsenate Redu 69.6 6.3 0.00014 26.9 3.1 34 101-140 2-35 (115)
267 cd03055 GST_N_Omega GST_N fami 67.2 19 0.0004 23.1 4.9 52 101-156 19-71 (89)
268 cd03074 PDI_b'_Calsequestrin_C 67.2 38 0.00081 23.2 9.9 103 85-191 6-120 (120)
269 KOG1651 Glutathione peroxidase 66.9 13 0.00028 27.4 4.3 56 83-138 20-76 (171)
270 COG3411 Ferredoxin [Energy pro 65.4 16 0.00034 22.4 3.8 29 152-191 17-45 (64)
271 TIGR01165 cbiN cobalt transpor 65.3 7.7 0.00017 25.5 2.6 19 1-19 1-19 (91)
272 cd03025 DsbA_FrnE_like DsbA fa 64.9 12 0.00025 27.6 4.1 27 101-127 3-29 (193)
273 PRK13730 conjugal transfer pil 64.5 15 0.00033 28.0 4.5 41 140-188 151-191 (212)
274 PF13778 DUF4174: Domain of un 63.1 46 0.001 22.8 9.3 74 109-189 22-110 (118)
275 cd03056 GST_N_4 GST_N family, 62.8 14 0.0003 22.2 3.5 57 102-164 2-62 (73)
276 PRK13344 spxA transcriptional 62.1 10 0.00022 26.7 3.1 21 101-121 2-22 (132)
277 COG5429 Uncharacterized secret 60.9 22 0.00047 27.8 4.8 79 99-189 43-139 (261)
278 PF04134 DUF393: Protein of un 60.5 16 0.00034 24.6 3.7 57 104-162 2-61 (114)
279 PF06764 DUF1223: Protein of u 59.6 77 0.0017 24.2 7.7 78 101-190 2-97 (202)
280 cd03025 DsbA_FrnE_like DsbA fa 58.7 8.4 0.00018 28.4 2.3 22 141-162 159-180 (193)
281 KOG0912 Thiol-disulfide isomer 54.8 62 0.0013 26.5 6.6 64 83-148 213-279 (375)
282 KOG4277 Uncharacterized conser 52.9 99 0.0021 25.3 7.4 89 83-189 137-229 (468)
283 PF11287 DUF3088: Protein of u 52.8 66 0.0014 22.1 5.6 82 109-192 24-108 (112)
284 cd03033 ArsC_15kD Arsenate Red 52.7 20 0.00043 24.5 3.2 21 101-121 2-22 (113)
285 KOG0852 Alkyl hydroperoxide re 51.7 25 0.00055 26.2 3.7 66 96-161 32-134 (196)
286 PF07315 DUF1462: Protein of u 50.0 72 0.0016 21.0 6.7 68 109-187 9-92 (93)
287 cd03052 GST_N_GDAP1 GST_N fami 49.8 58 0.0013 19.9 5.5 56 102-163 2-61 (73)
288 cd03030 GRX_SH3BGR Glutaredoxi 49.0 74 0.0016 20.8 5.6 38 108-145 8-46 (92)
289 PF04592 SelP_N: Selenoprotein 48.4 27 0.00058 27.3 3.5 43 96-138 25-71 (238)
290 PF00352 TBP: Transcription fa 48.1 31 0.00068 22.1 3.4 30 152-190 49-78 (86)
291 PF06953 ArsD: Arsenical resis 45.0 1E+02 0.0023 21.4 6.9 48 131-188 42-99 (123)
292 cd03062 TRX_Fd_Sucrase TRX-lik 43.1 55 0.0012 21.6 4.1 33 150-191 51-83 (97)
293 cd03053 GST_N_Phi GST_N family 42.8 75 0.0016 19.1 5.6 56 101-162 2-61 (76)
294 COG5494 Predicted thioredoxin/ 42.6 1.5E+02 0.0032 23.0 6.6 72 103-189 15-86 (265)
295 PF07511 DUF1525: Protein of u 41.6 65 0.0014 22.2 4.3 35 144-189 76-110 (114)
296 cd00307 RuBisCO_small_like Rib 39.3 31 0.00067 22.4 2.3 35 104-138 28-71 (84)
297 COG1393 ArsC Arsenate reductas 36.9 50 0.0011 22.7 3.2 22 100-121 2-23 (117)
298 COG0821 gcpE 1-hydroxy-2-methy 36.4 69 0.0015 26.5 4.3 76 108-190 263-350 (361)
299 TIGR02174 CXXU_selWTH selT/sel 35.7 1.1E+02 0.0023 18.9 4.4 27 157-187 45-71 (72)
300 PF09695 YtfJ_HI0045: Bacteria 34.0 1.9E+02 0.0041 21.2 8.1 39 143-188 115-155 (160)
301 cd03034 ArsC_ArsC Arsenate Red 33.0 48 0.001 22.4 2.6 20 102-121 2-21 (112)
302 COG2761 FrnE Predicted dithiol 33.0 85 0.0018 24.4 4.2 33 98-130 4-37 (225)
303 PRK10387 glutaredoxin 2; Provi 32.4 2.1E+02 0.0045 21.1 6.7 56 103-163 3-58 (210)
304 COG2101 SPT15 TATA-box binding 31.9 78 0.0017 23.6 3.6 29 154-191 55-83 (185)
305 TIGR00014 arsC arsenate reduct 31.5 52 0.0011 22.3 2.6 32 102-139 2-33 (114)
306 PF04551 GcpE: GcpE protein; 30.8 75 0.0016 26.5 3.7 77 108-190 270-358 (359)
307 PRK10081 entericidin B membran 30.6 71 0.0015 18.3 2.5 9 3-11 2-10 (48)
308 cd04518 TBP_archaea archaeal T 30.4 95 0.0021 23.0 4.0 28 154-190 140-167 (174)
309 KOG0324 Uncharacterized conser 30.4 53 0.0012 25.2 2.6 53 102-155 78-132 (214)
310 PF11337 DUF3139: Protein of u 30.0 66 0.0014 20.6 2.8 7 1-7 1-7 (85)
311 KOG1422 Intracellular Cl- chan 29.8 2.6E+02 0.0057 21.6 7.1 66 108-191 20-85 (221)
312 KOG1364 Predicted ubiquitin re 29.1 76 0.0017 26.3 3.5 53 132-191 135-189 (356)
313 PRK00366 ispG 4-hydroxy-3-meth 29.0 99 0.0022 25.8 4.2 76 108-190 270-356 (360)
314 cd03061 GST_N_CLIC GST_N famil 28.8 1.7E+02 0.0037 19.1 7.8 65 107-190 20-85 (91)
315 cd00652 TBP_TLF TATA box bindi 28.8 1E+02 0.0022 22.8 3.9 28 154-190 141-168 (174)
316 cd03021 DsbA_GSTK DsbA family, 27.6 72 0.0016 24.0 3.1 18 142-159 170-187 (209)
317 PF07700 HNOB: Heme NO binding 27.4 1.5E+02 0.0033 21.5 4.7 42 97-138 127-169 (171)
318 PLN00062 TATA-box-binding prot 27.4 1.1E+02 0.0024 22.8 3.9 28 154-190 140-167 (179)
319 PRK00394 transcription factor; 27.1 1.2E+02 0.0025 22.6 4.0 28 154-190 141-168 (179)
320 PRK11372 lysozyme inhibitor; P 27.0 57 0.0012 22.2 2.1 10 1-10 1-10 (109)
321 cd04516 TBP_eukaryotes eukaryo 26.9 1.2E+02 0.0025 22.6 3.9 28 154-190 140-167 (174)
322 PRK00394 transcription factor; 26.6 1.2E+02 0.0026 22.6 4.0 29 153-190 47-75 (179)
323 cd04517 TLF TBP-like factors ( 26.4 1.2E+02 0.0026 22.5 3.9 29 154-191 141-169 (174)
324 PRK13617 psbV cytochrome c-550 25.9 90 0.0019 23.1 3.1 41 77-126 47-96 (170)
325 cd00652 TBP_TLF TATA box bindi 25.8 1.3E+02 0.0027 22.3 4.0 29 153-190 48-76 (174)
326 cd04516 TBP_eukaryotes eukaryo 25.3 1.4E+02 0.0029 22.2 4.0 28 154-190 49-76 (174)
327 TIGR03757 conj_TIGR03757 integ 25.2 1.8E+02 0.0039 20.0 4.3 34 144-188 77-110 (113)
328 COG4604 CeuD ABC-type enteroch 25.0 3.3E+02 0.0073 21.2 6.6 48 110-165 169-216 (252)
329 COG5309 Exo-beta-1,3-glucanase 24.9 1.3E+02 0.0028 24.3 3.9 79 98-189 75-160 (305)
330 KOG0854 Alkyl hydroperoxide re 24.7 1.4E+02 0.003 22.5 3.8 49 89-139 25-76 (224)
331 PRK06287 cobalt transport prot 24.4 86 0.0019 21.3 2.6 18 1-18 2-19 (107)
332 PRK10853 putative reductase; P 24.4 91 0.002 21.4 2.8 21 101-121 2-22 (118)
333 cd04518 TBP_archaea archaeal T 24.4 1.4E+02 0.0031 22.1 4.0 29 153-190 48-76 (174)
334 cd04517 TLF TBP-like factors ( 24.1 1.5E+02 0.0033 21.9 4.1 29 153-190 48-76 (174)
335 TIGR02182 GRXB Glutaredoxin, G 23.7 3.1E+02 0.0068 20.4 6.7 55 104-163 3-57 (209)
336 PLN00062 TATA-box-binding prot 23.4 1.5E+02 0.0032 22.2 3.9 29 153-190 48-76 (179)
337 PF13405 EF-hand_6: EF-hand do 23.4 81 0.0018 15.5 1.9 17 171-191 14-30 (31)
338 PF05176 ATP-synt_10: ATP10 pr 23.2 3.8E+02 0.0082 21.2 7.4 41 142-188 205-247 (252)
339 PRK10026 arsenate reductase; P 23.1 1.1E+02 0.0024 21.8 3.1 22 101-122 4-25 (141)
340 PF15102 TMEM154: TMEM154 prot 23.1 1.8E+02 0.0038 21.0 4.0 17 79-96 120-136 (146)
341 TIGR01616 nitro_assoc nitrogen 22.8 1.3E+02 0.0028 21.0 3.3 21 101-121 3-23 (126)
342 PRK13620 psbV cytochrome c-550 22.4 57 0.0012 25.0 1.5 9 106-114 112-120 (215)
343 TIGR01287 nifH nitrogenase iro 21.6 1.1E+02 0.0023 24.1 3.1 61 87-150 211-271 (275)
344 PF13409 GST_N_2: Glutathione 21.4 1.2E+02 0.0026 18.2 2.7 50 108-162 1-55 (70)
345 cd03058 GST_N_Tau GST_N family 20.7 2E+02 0.0044 17.1 7.1 50 103-156 3-54 (74)
346 PHA02151 hypothetical protein 20.5 61 0.0013 23.7 1.3 13 98-110 204-216 (217)
347 PF11317 DUF3119: Protein of u 20.4 2E+02 0.0043 19.9 3.7 36 150-192 81-116 (116)
348 COG1930 CbiN ABC-type cobalt t 20.2 1.3E+02 0.0029 19.8 2.7 21 108-128 57-77 (97)
349 KOG0436 Methionyl-tRNA synthet 20.2 2.1E+02 0.0045 24.8 4.5 43 139-191 354-396 (578)
350 PF09363 XFP_C: XFP C-terminal 20.0 95 0.002 23.7 2.3 24 83-106 85-108 (203)
351 PRK03598 putative efflux pump 20.0 43 0.00094 27.2 0.6 23 1-23 1-23 (331)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-26 Score=161.54 Aligned_cols=103 Identities=32% Similarity=0.451 Sum_probs=95.2
Q ss_pred EecChhhHHHHH-hcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC
Q 046498 83 VNLSDKNFSDVL-AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 83 ~~~~~~~~~~~l-~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 161 (192)
...+..+|++.+ +.+.||+|+|||+||+||+.+.|.+++++.+|.+++.++++|.|++.+++.+|+|..+||+++|++|
T Consensus 46 ~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknG 125 (150)
T KOG0910|consen 46 NVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNG 125 (150)
T ss_pred cccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECC
Confidence 667889998554 6689999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 162 VHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 162 ~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
+.+.+. .|.. +.+.+.++|++.+.
T Consensus 126 e~~d~~---vG~~----~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 126 EKVDRF---VGAV----PKEQLRSLIKKFLK 149 (150)
T ss_pred EEeeee---cccC----CHHHHHHHHHHHhc
Confidence 999853 7999 99999999999763
No 2
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=9.3e-25 Score=151.08 Aligned_cols=100 Identities=13% Similarity=0.239 Sum_probs=90.5
Q ss_pred CCceEecChhhHHHH---HhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHH-HHcCCCcCcE
Q 046498 79 KENAVNLSDKNFSDV---LAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELA-KRWGIQGYPT 154 (192)
Q Consensus 79 ~~v~~~~~~~~~~~~---l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~-~~~~v~~~Pt 154 (192)
..| +++++.+|++. ++++++++|+|||+||++|+.+.|.++++++++++...|++||++++++++ ++|+|.++||
T Consensus 9 ~~v-~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPV-LDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCe-EEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 456 99999999987 477899999999999999999999999999999887779999999999999 5899999999
Q ss_pred EEEEeCCEEEeEeeecCCccccCCCHHHHHHH
Q 046498 155 IYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNY 186 (192)
Q Consensus 155 ~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~ 186 (192)
+.+|++|+...+ | .|.. +.+.|..|
T Consensus 88 l~lf~~g~~~~~-y--~G~~----~~~~i~~~ 112 (113)
T cd03006 88 IHLYYRSRGPIE-Y--KGPM----RAPYMEKF 112 (113)
T ss_pred EEEEECCccceE-E--eCCC----CHHHHHhh
Confidence 999999987654 6 8999 99999876
No 3
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.92 E-value=3.7e-24 Score=149.17 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=93.8
Q ss_pred CceEecChhhHHHHHhcC-CcEEEEEECCCChh--Hh--hhhHHHHHHHHHh--cCCcEEEEEeCcccHHHHHHcCCCcC
Q 046498 80 ENAVNLSDKNFSDVLAKN-QHVMVAFYAPWCFW--SK--KLAPEYKAAATEL--KGKAVLAKVDAINEIELAKRWGIQGY 152 (192)
Q Consensus 80 ~v~~~~~~~~~~~~l~~~-~~vlv~f~a~wC~~--C~--~~~p~l~~la~~~--~~~~~~~~vd~d~~~~l~~~~~v~~~ 152 (192)
.| ..+++++|++.+.++ .+++++||++||+| |+ .+.|.+.++++++ .+.+.|++||+|++++++++|||.++
T Consensus 10 ~v-~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i 88 (120)
T cd03065 10 RV-IDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE 88 (120)
T ss_pred ce-eeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence 45 889999999888664 68899999999987 99 8899999999998 77778999999999999999999999
Q ss_pred cEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 153 PTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 153 Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
||+++|++|+.+. | .|.+ +.+.|.+||.+++
T Consensus 89 PTl~lfk~G~~v~--~--~G~~----~~~~l~~~l~~~~ 119 (120)
T cd03065 89 DSIYVFKDDEVIE--Y--DGEF----AADTLVEFLLDLI 119 (120)
T ss_pred cEEEEEECCEEEE--e--eCCC----CHHHHHHHHHHHh
Confidence 9999999999876 7 8999 9999999999875
No 4
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.92 E-value=8.4e-24 Score=143.69 Aligned_cols=101 Identities=36% Similarity=0.687 Sum_probs=95.5
Q ss_pred EecChhhHHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC
Q 046498 83 VNLSDKNFSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 83 ~~~~~~~~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 161 (192)
..+++++|++.+.+ +++++|+||++||++|+.+.|.++++++++++.+.|+.||++++++++++|+|.++||++++++|
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETT
T ss_pred EECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECC
Confidence 78999999999987 89999999999999999999999999999998778999999999999999999999999999999
Q ss_pred EEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 162 VHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 162 ~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
+.+.+ | .|.. +.++|.+||++|
T Consensus 82 ~~~~~-~--~g~~----~~~~l~~~i~~~ 103 (103)
T PF00085_consen 82 KEVKR-Y--NGPR----NAESLIEFIEKH 103 (103)
T ss_dssp EEEEE-E--ESSS----SHHHHHHHHHHH
T ss_pred cEEEE-E--ECCC----CHHHHHHHHHcC
Confidence 99885 4 7999 999999999986
No 5
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=2.5e-24 Score=146.45 Aligned_cols=97 Identities=26% Similarity=0.584 Sum_probs=90.1
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCE
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGV 162 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 162 (192)
+++++++|++.+.++++++|+|||+||++|+.+.|.++++++++++.+.|++||+++++.++++++|.++||+++|++|+
T Consensus 4 ~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 4 VTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC
Confidence 78999999999988899999999999999999999999999999987779999999999999999999999999999998
Q ss_pred EEeEeeecCCccccCCCHHHHHHH
Q 046498 163 HVDTYYHDRKKRVFLEQGDDIVNY 186 (192)
Q Consensus 163 ~v~~~y~~~g~~~~~~~~~~l~~~ 186 (192)
.+.+ | .|.. +.++|.+|
T Consensus 84 ~~~~-~--~G~~----~~~~l~~f 100 (101)
T cd03003 84 NPEK-Y--YGDR----SKESLVKF 100 (101)
T ss_pred Cccc-C--CCCC----CHHHHHhh
Confidence 7664 5 8999 99998876
No 6
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.91 E-value=9.4e-24 Score=145.36 Aligned_cols=101 Identities=37% Similarity=0.687 Sum_probs=89.9
Q ss_pred CceEecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcC------CcEEEEEeCcccHHHHHHcCCCcCc
Q 046498 80 ENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKG------KAVLAKVDAINEIELAKRWGIQGYP 153 (192)
Q Consensus 80 ~v~~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~------~~~~~~vd~d~~~~l~~~~~v~~~P 153 (192)
.| +++++++|++.++.+++++|+|||+||++|+.+.|.++++++.+++ .+.++++|++++++++++|+|.++|
T Consensus 2 ~v-~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EI-VSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ce-EEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 35 8899999999998889999999999999999999999999987642 3569999999999999999999999
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
|+++|++|+.....| .|.. +.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~--~g~~----~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREY--RGQR----SVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceec--CCCC----CHHHHHhhC
Confidence 999999998655446 8999 999999875
No 7
>PHA02278 thioredoxin-like protein
Probab=99.91 E-value=1.5e-23 Score=142.84 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=83.3
Q ss_pred ChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc----HHHHHHcCCCcCcEEEEEeCC
Q 046498 86 SDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE----IELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 86 ~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~~g 161 (192)
+.++|++.+.++++++|+|||+||+||+.+.|.++++++++.....|+++|+|++ ++++++|+|.++||+++|++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 3477888888899999999999999999999999999988665556999999986 689999999999999999999
Q ss_pred EEEeEeeecCCccccCCCHHHHHHH
Q 046498 162 VHVDTYYHDRKKRVFLEQGDDIVNY 186 (192)
Q Consensus 162 ~~v~~~y~~~g~~~~~~~~~~l~~~ 186 (192)
+.+.+. .|.. +.+++.++
T Consensus 83 ~~v~~~---~G~~----~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKY---EDQV----TPMQLQEL 100 (103)
T ss_pred EEEEEE---eCCC----CHHHHHhh
Confidence 999954 7988 88888764
No 8
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.91 E-value=5.8e-24 Score=146.19 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=76.8
Q ss_pred hhhHHHHHh--cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEE
Q 046498 87 DKNFSDVLA--KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHV 164 (192)
Q Consensus 87 ~~~~~~~l~--~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v 164 (192)
.++|++.+. .+++++|+|||+||+||+.+.|.++++++++++...|++||+|++++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 467787775 467999999999999999999999999999998777999999999999999999999999999999999
Q ss_pred eEeeecCCcc
Q 046498 165 DTYYHDRKKR 174 (192)
Q Consensus 165 ~~~y~~~g~~ 174 (192)
.+. .|..
T Consensus 82 ~~~---~G~~ 88 (114)
T cd02954 82 KID---LGTG 88 (114)
T ss_pred EEE---cCCC
Confidence 854 5754
No 9
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.3e-23 Score=163.47 Aligned_cols=104 Identities=31% Similarity=0.542 Sum_probs=96.1
Q ss_pred ceEecChhhHHHHH-hc--CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEE
Q 046498 81 NAVNLSDKNFSDVL-AK--NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYF 157 (192)
Q Consensus 81 v~~~~~~~~~~~~l-~~--~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 157 (192)
+ +++|+.||+..+ .+ .+||+|+||+|||++|+.+.|.+++++++|.+++.+++||||+++.++.+|||+++||++.
T Consensus 25 I-~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 25 I-KDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred c-eechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence 6 999999999665 22 4699999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 158 FVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 158 ~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
|++|+.+.- +.|.. .++.+++||.++++
T Consensus 104 f~dGqpVdg---F~G~q----Pesqlr~~ld~~~~ 131 (304)
T COG3118 104 FKDGQPVDG---FQGAQ----PESQLRQFLDKVLP 131 (304)
T ss_pred eeCCcCccc---cCCCC----cHHHHHHHHHHhcC
Confidence 999999994 38999 89999999998764
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.90 E-value=4e-23 Score=141.19 Aligned_cols=98 Identities=31% Similarity=0.607 Sum_probs=87.8
Q ss_pred EecChhhHHHHHh-cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC
Q 046498 83 VNLSDKNFSDVLA-KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 83 ~~~~~~~~~~~l~-~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 161 (192)
.+++.++|++.+. .+++++|+|||+||++|+.+.|.++++++++.+...|+++|++++++++++++|.++||+++|++|
T Consensus 4 ~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 4 ITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 7889999998864 467999999999999999999999999999988777999999999999999999999999999988
Q ss_pred -EEEeEeeecCCccccCCC-HHHHHHHH
Q 046498 162 -VHVDTYYHDRKKRVFLEQ-GDDIVNYI 187 (192)
Q Consensus 162 -~~v~~~y~~~g~~~~~~~-~~~l~~~l 187 (192)
+.+.+ | .|.. + .++|.+||
T Consensus 84 ~~~~~~-~--~G~~----~~~~~l~~~i 104 (104)
T cd03004 84 ASKYHS-Y--NGWH----RDADSILEFI 104 (104)
T ss_pred CCCceE-c--cCCC----CCHHHHHhhC
Confidence 65553 5 8988 7 99998875
No 11
>PRK10996 thioredoxin 2; Provisional
Probab=99.90 E-value=3.2e-22 Score=143.75 Aligned_cols=106 Identities=28% Similarity=0.520 Sum_probs=97.4
Q ss_pred CCCceEecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEE
Q 046498 78 EKENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYF 157 (192)
Q Consensus 78 ~~~v~~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 157 (192)
.+.+ +++++++|+++++++++++|+||++||++|+.+.|.++++++++.+...++++|++++++++++|+|.++||+++
T Consensus 34 ~~~~-i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 34 DGEV-INATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CCCC-EEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 3456 788999999999889999999999999999999999999999998877799999999999999999999999999
Q ss_pred EeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 158 FVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 158 ~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
|++|+.+.+. .|.. +.+++.+||++++
T Consensus 113 ~~~G~~v~~~---~G~~----~~e~l~~~l~~~~ 139 (139)
T PRK10996 113 FKNGQVVDML---NGAV----PKAPFDSWLNEAL 139 (139)
T ss_pred EECCEEEEEE---cCCC----CHHHHHHHHHHhC
Confidence 9999988853 7999 9999999999864
No 12
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=2e-22 Score=137.02 Aligned_cols=99 Identities=34% Similarity=0.607 Sum_probs=86.9
Q ss_pred CceEecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcC-CcEEEEEeCcccHHHHHHcCCCcCcEEEEE
Q 046498 80 ENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKG-KAVLAKVDAINEIELAKRWGIQGYPTIYFF 158 (192)
Q Consensus 80 ~v~~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 158 (192)
.| +++++++|++.+++ . ++|+|||+||++|+.+.|.++++++.+++ .+.++++|+++++.++++|+|.++||++++
T Consensus 2 ~v-~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NV-VELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ce-EEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 35 88999999998853 3 78999999999999999999999998765 355999999999999999999999999999
Q ss_pred eCCEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 159 VNGVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 159 ~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
++|+. .+ | .|.. +.++|.++|.+
T Consensus 79 ~~g~~-~~-~--~G~~----~~~~l~~~i~~ 101 (101)
T cd02994 79 KDGVF-RR-Y--QGPR----DKEDLISFIEE 101 (101)
T ss_pred CCCCE-EE-e--cCCC----CHHHHHHHHhC
Confidence 99974 32 6 8999 99999999864
No 13
>PRK09381 trxA thioredoxin; Provisional
Probab=99.89 E-value=5.8e-22 Score=136.56 Aligned_cols=104 Identities=27% Similarity=0.494 Sum_probs=94.4
Q ss_pred CceEecChhhHHHH-HhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEE
Q 046498 80 ENAVNLSDKNFSDV-LAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFF 158 (192)
Q Consensus 80 ~v~~~~~~~~~~~~-l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 158 (192)
.| +++++++|++. ++.+++++|+||++||++|+.+.|.++++++++++...++.+|+++++.++++|++.++||+++|
T Consensus 4 ~v-~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 4 KI-IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred cc-eeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 45 88899999864 56678999999999999999999999999999988777999999999999999999999999999
Q ss_pred eCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 159 VNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 159 ~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
++|+.+.+. .|.. +.+++.++|.+++
T Consensus 83 ~~G~~~~~~---~G~~----~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGEVAATK---VGAL----SKGQLKEFLDANL 108 (109)
T ss_pred eCCeEEEEe---cCCC----CHHHHHHHHHHhc
Confidence 999888753 7998 9999999999876
No 14
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.89 E-value=3.9e-22 Score=136.23 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=81.9
Q ss_pred ChhhHHHHHhc--CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH---HHHHHcCCCcCcEEEEEeC
Q 046498 86 SDKNFSDVLAK--NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI---ELAKRWGIQGYPTIYFFVN 160 (192)
Q Consensus 86 ~~~~~~~~l~~--~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~---~l~~~~~v~~~Pt~~~~~~ 160 (192)
+.++|++.+.+ +++++|+|||+||++|+.+.|.++++++++ +...|++||+|+++ +++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 35778888754 789999999999999999999999999999 45679999999874 8999999999999999999
Q ss_pred CEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 161 GVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 161 g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
|+.+.+ + .|.. +++|.+.+.+
T Consensus 81 G~~v~~-~--~G~~-----~~~l~~~~~~ 101 (103)
T cd02985 81 GEKIHE-E--EGIG-----PDELIGDVLY 101 (103)
T ss_pred CeEEEE-E--eCCC-----HHHHHHHHHh
Confidence 998875 3 7855 7888877754
No 15
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.89 E-value=7.3e-22 Score=151.58 Aligned_cols=105 Identities=33% Similarity=0.630 Sum_probs=94.3
Q ss_pred CCceEecChhhHHHHHhc-----CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCc
Q 046498 79 KENAVNLSDKNFSDVLAK-----NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYP 153 (192)
Q Consensus 79 ~~v~~~~~~~~~~~~l~~-----~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 153 (192)
..+ .++++++|++.+.. +++++|+|||+||++|+.+.|.++++++++++.+.++.+|++++++++++|+|.++|
T Consensus 30 ~~V-v~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NAL-VLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCc-EECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 356 99999999998753 479999999999999999999999999999987779999999999999999999999
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
|+++|++|+.+.. ..|.. +.+++.+|+.+.+
T Consensus 109 Tl~~f~~G~~v~~---~~G~~----s~e~L~~fi~~~~ 139 (224)
T PTZ00443 109 TLLLFDKGKMYQY---EGGDR----STEKLAAFALGDF 139 (224)
T ss_pred EEEEEECCEEEEe---eCCCC----CHHHHHHHHHHHH
Confidence 9999999988773 26888 9999999998764
No 16
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.89 E-value=3.2e-22 Score=138.43 Aligned_cols=101 Identities=20% Similarity=0.382 Sum_probs=88.4
Q ss_pred EecChhhHHH-HHh--cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcccHHHHHHcCCCcCcEEEEE
Q 046498 83 VNLSDKNFSD-VLA--KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK-AVLAKVDAINEIELAKRWGIQGYPTIYFF 158 (192)
Q Consensus 83 ~~~~~~~~~~-~l~--~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 158 (192)
..++.++|++ ++. .+++++|+|||+||++|+.+.|.++++++++++. ..+++||+++++.++++++|.++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 4567788875 443 5789999999999999999999999999999764 56999999999999999999999999999
Q ss_pred eCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 159 VNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 159 ~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
++|+.+.. ..|.. +.++|.++|.++
T Consensus 87 ~~g~~~~~---~~G~~----~~~~l~~~i~~~ 111 (111)
T cd02963 87 INGQVTFY---HDSSF----TKQHVVDFVRKL 111 (111)
T ss_pred ECCEEEEE---ecCCC----CHHHHHHHHhcC
Confidence 99988774 37999 999999999863
No 17
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.89 E-value=3.7e-22 Score=135.64 Aligned_cols=97 Identities=33% Similarity=0.722 Sum_probs=87.5
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcC---CcEEEEEeCcccHHHHHHcCCCcCcEEEEEe
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKG---KAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 159 (192)
+++++++|++.+.++ .++|+|||+||++|+.+.|.++++++++.+ ...++.+|+++++.++++|+|.++||+++|+
T Consensus 3 ~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 3 LELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFK 81 (102)
T ss_pred eECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEe
Confidence 788999999999766 599999999999999999999999999976 4569999999999999999999999999999
Q ss_pred CCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 160 NGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 160 ~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
+|+.+.+ | .|.. +.++|.+||
T Consensus 82 ~g~~~~~-~--~G~~----~~~~l~~~i 102 (102)
T cd03005 82 DGEKVDK-Y--KGTR----DLDSLKEFV 102 (102)
T ss_pred CCCeeeE-e--eCCC----CHHHHHhhC
Confidence 9987654 4 8999 999988774
No 18
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.88 E-value=4.8e-22 Score=133.83 Aligned_cols=93 Identities=33% Similarity=0.567 Sum_probs=83.2
Q ss_pred hHHHHHh-c-CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeE
Q 046498 89 NFSDVLA-K-NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDT 166 (192)
Q Consensus 89 ~~~~~l~-~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~ 166 (192)
+|++.+. . +++++|+||++||++|+.+.|.++++++.+++...+++||++++++++++|+|.++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 5666663 3 6799999999999999999999999999998876799999999999999999999999999999988875
Q ss_pred eeecCCccccCCCHHHHHHHHH
Q 046498 167 YYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 167 ~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
+ .|.. +.++|.++|+
T Consensus 82 -~--~g~~----~~~~l~~~l~ 96 (96)
T cd02956 82 -F--QGAQ----PEEQLRQMLD 96 (96)
T ss_pred -e--cCCC----CHHHHHHHhC
Confidence 4 8999 9999998873
No 19
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.88 E-value=7.9e-22 Score=134.46 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=86.2
Q ss_pred cChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEE
Q 046498 85 LSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK-AVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVH 163 (192)
Q Consensus 85 ~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 163 (192)
-+.++|+++++++++++|+|||+||++|+.+.|.++++++++++. ..|+.+|+| +++++++|+|+++||+++|++|+.
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 467899999988999999999999999999999999999999864 459999999 778999999999999999999999
Q ss_pred EeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 164 VDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 164 v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
+.+. .| . +++.+.++|.++
T Consensus 84 ~~~~---~G-~----~~~~~~~~i~~~ 102 (102)
T cd02948 84 VAVI---RG-A----NAPLLNKTITEL 102 (102)
T ss_pred EEEE---ec-C----ChHHHHHHHhhC
Confidence 9864 47 5 589999988763
No 20
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.88 E-value=5e-22 Score=135.77 Aligned_cols=96 Identities=21% Similarity=0.230 Sum_probs=89.1
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCC--ChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeC
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPW--CFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVN 160 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~w--C~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 160 (192)
..++..+|++.+..+..++|.||++| |++|+.+.|.+++++++|++...|+++|++++++++.+|+|.++||+++|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkd 92 (111)
T cd02965 13 PRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRD 92 (111)
T ss_pred cccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEEC
Confidence 66788999999988899999999997 9999999999999999999987799999999999999999999999999999
Q ss_pred CEEEeEeeecCCccccCCCHHHHHH
Q 046498 161 GVHVDTYYHDRKKRVFLEQGDDIVN 185 (192)
Q Consensus 161 g~~v~~~y~~~g~~~~~~~~~~l~~ 185 (192)
|+.+.+. .|.. +.+++..
T Consensus 93 Gk~v~~~---~G~~----~~~e~~~ 110 (111)
T cd02965 93 GRYVGVL---AGIR----DWDEYVA 110 (111)
T ss_pred CEEEEEE---eCcc----CHHHHhh
Confidence 9999864 7999 8888753
No 21
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.88 E-value=8.4e-22 Score=140.45 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=85.1
Q ss_pred ChhhHHHHHh--cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEE-EEeCCE
Q 046498 86 SDKNFSDVLA--KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIY-FFVNGV 162 (192)
Q Consensus 86 ~~~~~~~~l~--~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~-~~~~g~ 162 (192)
+.++|++.+. ++++++|+|||+||+||+.+.|.|+++++++++...|++||+|++++++++|+|.+.|+++ +|++|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 4678888774 4689999999999999999999999999999987779999999999999999999877666 889998
Q ss_pred -EEeEeeecCC--------ccccCCCHHHHHHHHHHhh
Q 046498 163 -HVDTYYHDRK--------KRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 163 -~v~~~y~~~g--------~~~~~~~~~~l~~~l~~~l 191 (192)
.+. +.+| .. +.++|.+.++..+
T Consensus 90 ~~vd---~~tG~~~k~~~~~~----~k~~l~~~i~~~~ 120 (142)
T PLN00410 90 IMID---LGTGNNNKINWALK----DKQEFIDIVETVY 120 (142)
T ss_pred EEEE---EecccccccccccC----CHHHHHHHHHHHH
Confidence 666 4478 56 7889988887653
No 22
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.1e-22 Score=135.09 Aligned_cols=85 Identities=29% Similarity=0.509 Sum_probs=78.5
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCcccc
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVF 176 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~ 176 (192)
+++++|+|||+|||||+.+.|.+++|+++|++ ..|+++|+|+.++++++++|...||+.++++|+.+.+. .|..
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~---vGa~-- 94 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEV---VGAN-- 94 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEE---ecCC--
Confidence 58999999999999999999999999999999 88999999999999999999999999999999999965 5876
Q ss_pred CCCHHHHHHHHHHh
Q 046498 177 LEQGDDIVNYIKTK 190 (192)
Q Consensus 177 ~~~~~~l~~~l~~~ 190 (192)
.+++.+.+.++
T Consensus 95 ---~~~l~~~i~~~ 105 (106)
T KOG0907|consen 95 ---KAELEKKIAKH 105 (106)
T ss_pred ---HHHHHHHHHhc
Confidence 67888887764
No 23
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.88 E-value=6.5e-22 Score=136.13 Aligned_cols=100 Identities=38% Similarity=0.677 Sum_probs=88.9
Q ss_pred EecChhhHHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc--cHHHHHHcCCCcCcEEEEEe
Q 046498 83 VNLSDKNFSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN--EIELAKRWGIQGYPTIYFFV 159 (192)
Q Consensus 83 ~~~~~~~~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~ 159 (192)
+++++++|++.+.+ +++++|+|||+||++|+.+.|.++++++.+++...++.+|+++ +++++++|+|.++||+++|+
T Consensus 3 ~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~ 82 (109)
T cd03002 3 YELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFR 82 (109)
T ss_pred EEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEe
Confidence 78999999988755 6779999999999999999999999999998877799999998 88999999999999999999
Q ss_pred CCE----EEeEeeecCCccccCCCHHHHHHHHH
Q 046498 160 NGV----HVDTYYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 160 ~g~----~v~~~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
+|+ .....| .|.. +.++|.+||.
T Consensus 83 ~~~~~~~~~~~~~--~G~~----~~~~l~~fi~ 109 (109)
T cd03002 83 PPKKASKHAVEDY--NGER----SAKAIVDFVL 109 (109)
T ss_pred CCCcccccccccc--cCcc----CHHHHHHHhC
Confidence 885 234346 8999 9999999873
No 24
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.88 E-value=1.3e-21 Score=133.19 Aligned_cols=99 Identities=39% Similarity=0.658 Sum_probs=88.8
Q ss_pred EecChhhHHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC
Q 046498 83 VNLSDKNFSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 83 ~~~~~~~~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 161 (192)
.++++++|++.+.+ +++++|.||++||++|+.+.|.+.++++++.+...++.+|++++++++++|+|.++|++++|++|
T Consensus 3 ~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 3 VELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred EEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 78899999988755 45699999999999999999999999999988777999999999999999999999999999988
Q ss_pred EEEeEeeecCCccccCCCHHHHHHHH
Q 046498 162 VHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 162 ~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
+.....| .|.. +.++|.+|+
T Consensus 83 ~~~~~~~--~g~~----~~~~l~~~~ 102 (103)
T cd03001 83 KNSPQDY--QGGR----TAKAIVSAA 102 (103)
T ss_pred Ccceeec--CCCC----CHHHHHHHh
Confidence 4444436 8999 999999886
No 25
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.87 E-value=1.6e-21 Score=132.84 Aligned_cols=98 Identities=45% Similarity=0.880 Sum_probs=88.8
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhc--CCcEEEEEeCcc--cHHHHHHcCCCcCcEEEEE
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELK--GKAVLAKVDAIN--EIELAKRWGIQGYPTIYFF 158 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~--~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~ 158 (192)
.++++.+|++.++++++++|+||++||++|+.+.|.++++++.+. +...++.+|+++ ++.+++++++.++||+++|
T Consensus 3 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~ 82 (104)
T cd02997 3 VHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYF 82 (104)
T ss_pred EEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEE
Confidence 788999999999988999999999999999999999999999987 445699999998 8999999999999999999
Q ss_pred eCCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 159 VNGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 159 ~~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
++|+.+.+ | .|.. +.+++.+||
T Consensus 83 ~~g~~~~~-~--~g~~----~~~~l~~~l 104 (104)
T cd02997 83 ENGKFVEK-Y--EGER----TAEDIIEFM 104 (104)
T ss_pred eCCCeeEE-e--CCCC----CHHHHHhhC
Confidence 99987664 5 8999 999998875
No 26
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.87 E-value=1.9e-21 Score=131.88 Aligned_cols=100 Identities=48% Similarity=0.828 Sum_probs=89.7
Q ss_pred cChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcC--CcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCE
Q 046498 85 LSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKG--KAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGV 162 (192)
Q Consensus 85 ~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 162 (192)
+++++|++.+.++++++|+||++||++|+.+.|.++++++.+++ .+.++.+|++++++++++|++.++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 46789999988889999999999999999999999999999987 4669999999999999999999999999999887
Q ss_pred EEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 163 HVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 163 ~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.+. .| .|.. +.++|.+||++++
T Consensus 81 ~~~-~~--~g~~----~~~~l~~~i~~~~ 102 (102)
T TIGR01126 81 KPV-DY--EGGR----DLEAIVEFVNEKS 102 (102)
T ss_pred cce-ee--cCCC----CHHHHHHHHHhcC
Confidence 533 25 8999 9999999998864
No 27
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.87 E-value=1.5e-21 Score=132.55 Aligned_cols=84 Identities=24% Similarity=0.498 Sum_probs=75.4
Q ss_pred hcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCc-ccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCc
Q 046498 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI-NEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKK 173 (192)
Q Consensus 95 ~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~ 173 (192)
.++++++|+|||+||++|+.+.|.++++++++++ ..+++||.+ ++++++++|+|.++||+++|++| .+.+ | .|.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~-~--~G~ 90 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVR-Y--NGT 90 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeE-e--cCC
Confidence 3578999999999999999999999999999976 568999999 88999999999999999999998 4443 5 899
Q ss_pred cccCCCHHHHHHHH
Q 046498 174 RVFLEQGDDIVNYI 187 (192)
Q Consensus 174 ~~~~~~~~~l~~~l 187 (192)
. +.++|.+|+
T Consensus 91 ~----~~~~l~~f~ 100 (100)
T cd02999 91 R----TLDSLAAFY 100 (100)
T ss_pred C----CHHHHHhhC
Confidence 9 999999875
No 28
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.86 E-value=1.4e-20 Score=130.58 Aligned_cols=103 Identities=22% Similarity=0.281 Sum_probs=87.2
Q ss_pred CceEecCh-hhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEE
Q 046498 80 ENAVNLSD-KNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFF 158 (192)
Q Consensus 80 ~v~~~~~~-~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 158 (192)
.+ ..+++ ++|.+.+.++++++|+||++||++|+.+.|.++++++++++ ..|++||++++++++++|+|.++||+++|
T Consensus 5 ~v-~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KY-REVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred Ce-EEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 44 66666 89999998889999999999999999999999999999976 67999999999999999999999999999
Q ss_pred eCCEEEeEeeecCCccc----cCCCHHHHHHHH
Q 046498 159 VNGVHVDTYYHDRKKRV----FLEQGDDIVNYI 187 (192)
Q Consensus 159 ~~g~~v~~~y~~~g~~~----~~~~~~~l~~~l 187 (192)
++|+.+.+. .|..- .+.+.+++..||
T Consensus 83 k~G~~v~~~---~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 83 KNGKTVDRI---VGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred ECCEEEEEE---ECccccCCCCCCCHHHHHHHh
Confidence 999998864 34320 122567776665
No 29
>PTZ00102 disulphide isomerase; Provisional
Probab=99.86 E-value=1.3e-20 Score=160.25 Aligned_cols=104 Identities=48% Similarity=0.816 Sum_probs=94.5
Q ss_pred CceEecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcC---CcEEEEEeCcccHHHHHHcCCCcCcEEE
Q 046498 80 ENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKG---KAVLAKVDAINEIELAKRWGIQGYPTIY 156 (192)
Q Consensus 80 ~v~~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 156 (192)
.+ .++++++|++.+++++.++|+|||+||++|+++.|.++++++.+.+ .+.++.|||+++.+++++|+|.++||++
T Consensus 33 ~v-~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 33 HV-TVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred Cc-EEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 46 8999999999999899999999999999999999999999987753 3569999999999999999999999999
Q ss_pred EEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 157 FFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 157 ~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
+|++|+.+. | .|.+ +.+.+.+|+.++++
T Consensus 112 ~~~~g~~~~--y--~g~~----~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 112 FFNKGNPVN--Y--SGGR----TADGIVSWIKKLTG 139 (477)
T ss_pred EEECCceEE--e--cCCC----CHHHHHHHHHHhhC
Confidence 999998773 7 8999 99999999998764
No 30
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.86 E-value=7.9e-21 Score=129.79 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=81.8
Q ss_pred hhHHHHHh--cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEe
Q 046498 88 KNFSDVLA--KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 88 ~~~~~~l~--~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
++|++.+. ++++++|+|+|+||+||+.+.|.++++++++++...|++||+|+.++++++|+|...||+++|++|+.+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 56666664 4789999999999999999999999999999876679999999999999999999999999999999888
Q ss_pred EeeecCCcc------ccCCCHHHHHHHHHH
Q 046498 166 TYYHDRKKR------VFLEQGDDIVNYIKT 189 (192)
Q Consensus 166 ~~y~~~g~~------~~~~~~~~l~~~l~~ 189 (192)
..| |.. ....+.++++..++-
T Consensus 83 ~d~---gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 83 VDY---GSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred Eec---CCCCCcEEEEEcCchhHHHHHHHH
Confidence 765 422 001145677666654
No 31
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.86 E-value=3.5e-20 Score=134.38 Aligned_cols=87 Identities=18% Similarity=0.339 Sum_probs=78.4
Q ss_pred CceEecChhhHHHHHhc--CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcccHHHHHHcCCCc-----
Q 046498 80 ENAVNLSDKNFSDVLAK--NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK-AVLAKVDAINEIELAKRWGIQG----- 151 (192)
Q Consensus 80 ~v~~~~~~~~~~~~l~~--~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~~~~l~~~~~v~~----- 151 (192)
.+ .++++++|++.+.. +++++|+|||+||++|+.+.|.++++++++++. ..|++||++++++++++|+|.+
T Consensus 29 ~v-~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 29 HI-KYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred cc-EEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 45 88899999988743 468999999999999999999999999999754 6699999999999999999988
Q ss_pred -CcEEEEEeCCEEEeEe
Q 046498 152 -YPTIYFFVNGVHVDTY 167 (192)
Q Consensus 152 -~Pt~~~~~~g~~v~~~ 167 (192)
+||+++|++|+.+.+.
T Consensus 108 ~~PT~ilf~~Gk~v~r~ 124 (152)
T cd02962 108 QLPTIILFQGGKEVARR 124 (152)
T ss_pred CCCEEEEEECCEEEEEE
Confidence 9999999999999864
No 32
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.85 E-value=1.2e-20 Score=130.90 Aligned_cols=103 Identities=22% Similarity=0.274 Sum_probs=86.2
Q ss_pred CCceEecChhhHHHHHhcC---CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEE
Q 046498 79 KENAVNLSDKNFSDVLAKN---QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTI 155 (192)
Q Consensus 79 ~~v~~~~~~~~~~~~l~~~---~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~ 155 (192)
+.+ .++++++|.+.+.+. ++++|+||++||++|+.+.|.++++++++++ ..|++||++++ +++++|+|.++||+
T Consensus 4 g~v-~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEV-REISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTL 80 (113)
T ss_pred ceE-EEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEE
Confidence 345 788999999887654 7999999999999999999999999999976 57999999999 99999999999999
Q ss_pred EEEeCCEEEeEeeecCCcc---ccCCCHHHHHHHH
Q 046498 156 YFFVNGVHVDTYYHDRKKR---VFLEQGDDIVNYI 187 (192)
Q Consensus 156 ~~~~~g~~v~~~y~~~g~~---~~~~~~~~l~~~l 187 (192)
++|++|+.+.+. .|.. ..+.+.+.|.+++
T Consensus 81 ~~f~~G~~v~~~---~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGELIDNI---VGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEECCEEEEEE---ecHHHhCCCCCCHHHHHHHh
Confidence 999999999864 4532 1233566666654
No 33
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.85 E-value=1.2e-20 Score=130.08 Aligned_cols=101 Identities=29% Similarity=0.563 Sum_probs=85.3
Q ss_pred CceEecChhhHHHHHh---cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcc-cHHHHH-HcCCCcCc
Q 046498 80 ENAVNLSDKNFSDVLA---KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK-AVLAKVDAIN-EIELAK-RWGIQGYP 153 (192)
Q Consensus 80 ~v~~~~~~~~~~~~l~---~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~-~~~l~~-~~~v~~~P 153 (192)
.| .+++.++|+.++. ++++++|+||++||++|+.+.|.++++++.+.+. ..++.||++. +..+++ .++++++|
T Consensus 2 ~v-~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AV-VTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cc-eeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 35 8899999998874 4689999999999999999999999999999875 5699999998 577776 49999999
Q ss_pred EEEEEeCCEEEeEeeecCCc-cccCCCHHHHHHHH
Q 046498 154 TIYFFVNGVHVDTYYHDRKK-RVFLEQGDDIVNYI 187 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~-~~~~~~~~~l~~~l 187 (192)
|+++|++|......| .|. + +.+.|..||
T Consensus 81 ti~~f~~~~~~~~~y--~g~~~----~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKY--PSEQR----DVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceec--cCCCC----CHHHHHhhC
Confidence 999998764434337 884 8 899998875
No 34
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.85 E-value=2e-20 Score=134.81 Aligned_cols=99 Identities=16% Similarity=0.321 Sum_probs=86.6
Q ss_pred ChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc--HHHHHHcCCCcCcEEEEEe-CCE
Q 046498 86 SDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE--IELAKRWGIQGYPTIYFFV-NGV 162 (192)
Q Consensus 86 ~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~~-~g~ 162 (192)
+...+++.+.++++++|+|||+||++|+.+.|.++++++++.+...|+.||+|.. .+++++|+|.++||+++|+ +|+
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 3456788888899999999999999999999999999999987766888888764 5889999999999999995 888
Q ss_pred EEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 163 HVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 163 ~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.+.+. .|.. +.++|.++|.+++
T Consensus 89 ~v~~~---~G~~----~~~~l~~~l~~l~ 110 (142)
T cd02950 89 EEGQS---IGLQ----PKQVLAQNLDALV 110 (142)
T ss_pred EEEEE---eCCC----CHHHHHHHHHHHH
Confidence 88853 7999 8999999998875
No 35
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.85 E-value=4.4e-20 Score=124.73 Aligned_cols=100 Identities=31% Similarity=0.581 Sum_probs=89.2
Q ss_pred cChhhHHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEE
Q 046498 85 LSDKNFSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVH 163 (192)
Q Consensus 85 ~~~~~~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 163 (192)
++.+++++.+++ +++++|+||++||++|+.+.|.++++++++++...|+.+|++++++++++|++.++|+++++++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 356788887765 4699999999999999999999999999998777899999999999999999999999999999988
Q ss_pred EeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 164 VDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 164 v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+.. + .|.. +.+++.++|++++
T Consensus 81 ~~~-~--~g~~----~~~~l~~~l~~~~ 101 (101)
T TIGR01068 81 VDR-S--VGAL----PKAALKQLINKNL 101 (101)
T ss_pred eee-e--cCCC----CHHHHHHHHHhhC
Confidence 765 3 6988 9999999998864
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.84 E-value=1.9e-20 Score=127.56 Aligned_cols=99 Identities=41% Similarity=0.791 Sum_probs=86.5
Q ss_pred EecChhhHHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhc--CCcEEEEEeCcc-cHHHHHHcCCCcCcEEEEE
Q 046498 83 VNLSDKNFSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELK--GKAVLAKVDAIN-EIELAKRWGIQGYPTIYFF 158 (192)
Q Consensus 83 ~~~~~~~~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~--~~~~~~~vd~d~-~~~l~~~~~v~~~Pt~~~~ 158 (192)
.++++++|++.+.+ +++++|+||++||++|+.+.|.++++++.++ +.+.++.+|+++ +++++++|+|.++|++++|
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 3 VELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82 (105)
T ss_pred EEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence 77889999988865 4599999999999999999999999999987 345699999999 9999999999999999999
Q ss_pred eCCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 159 VNGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 159 ~~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
++|+.....| .|.. +.++|.+||
T Consensus 83 ~~~~~~~~~~--~g~~----~~~~l~~~i 105 (105)
T cd02998 83 PKGSTEPVKY--EGGR----DLEDLVKFV 105 (105)
T ss_pred eCCCCCcccc--CCcc----CHHHHHhhC
Confidence 8775444335 8999 999998875
No 37
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.4e-21 Score=158.60 Aligned_cols=108 Identities=43% Similarity=0.754 Sum_probs=98.9
Q ss_pred CCCCceEecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC---cEEEEEeCcccHHHHHHcCCCcCc
Q 046498 77 DEKENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK---AVLAKVDAINEIELAKRWGIQGYP 153 (192)
Q Consensus 77 ~~~~v~~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~---~~~~~vd~d~~~~l~~~~~v~~~P 153 (192)
.+..| ..++.++|++.+..+..++|.||||||++|+++.|.+++.|+.+... +..++||++++.++|.+|+|+|+|
T Consensus 23 ~~~~V-l~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDV-LVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccce-EEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 45677 99999999999999999999999999999999999999999988764 349999999999999999999999
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
|+.+|++|+. ...| +|.+ +.+.+..|+.+..|
T Consensus 102 TlkiFrnG~~-~~~Y--~G~r----~adgIv~wl~kq~g 133 (493)
T KOG0190|consen 102 TLKIFRNGRS-AQDY--NGPR----EADGIVKWLKKQSG 133 (493)
T ss_pred eEEEEecCCc-ceec--cCcc----cHHHHHHHHHhccC
Confidence 9999999987 3338 9999 99999999998764
No 38
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.84 E-value=3.6e-20 Score=126.60 Aligned_cols=94 Identities=37% Similarity=0.688 Sum_probs=80.9
Q ss_pred hhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcC---CcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEE
Q 046498 88 KNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKG---KAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHV 164 (192)
Q Consensus 88 ~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v 164 (192)
++|++. .++++++|.|||+||++|+.+.|.++++++++++ ...++.+|+++.++++++|+|.++||+++|++|...
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~ 85 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAY 85 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCce
Confidence 677775 4467999999999999999999999999999854 245999999999999999999999999999877443
Q ss_pred eEeeecCCccccCCCHHHHHHHHHHh
Q 046498 165 DTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 165 ~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
. | .|.. +.++|.+++++.
T Consensus 86 ~--~--~G~~----~~~~l~~~~~~~ 103 (104)
T cd03000 86 N--Y--RGPR----TKDDIVEFANRV 103 (104)
T ss_pred e--e--cCCC----CHHHHHHHHHhh
Confidence 3 5 8999 999999999863
No 39
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.84 E-value=4.5e-20 Score=124.32 Aligned_cols=94 Identities=22% Similarity=0.461 Sum_probs=81.9
Q ss_pred ChhhHHHHHhcC--CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEE
Q 046498 86 SDKNFSDVLAKN--QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVH 163 (192)
Q Consensus 86 ~~~~~~~~l~~~--~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 163 (192)
+.++|++.+... ++++|+||++||++|+.+.|.++++++++.....++++|+++.++++++|++.++||+++|++|+.
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 356788888665 899999999999999999999999999976667799999999999999999999999999999998
Q ss_pred EeEeeecCCccccCCCHHHHHHHH
Q 046498 164 VDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 164 v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
+.+. .|. +.++|.+.|
T Consensus 81 ~~~~---~g~-----~~~~l~~~~ 96 (97)
T cd02984 81 VDRV---SGA-----DPKELAKKV 96 (97)
T ss_pred EEEE---eCC-----CHHHHHHhh
Confidence 8753 574 478887765
No 40
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.83 E-value=5.4e-20 Score=125.20 Aligned_cols=98 Identities=38% Similarity=0.728 Sum_probs=84.7
Q ss_pred EecChhhHHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhcC--CcEEEEEeCcccHHHHHHcCCCcCcEEEEEe
Q 046498 83 VNLSDKNFSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELKG--KAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159 (192)
Q Consensus 83 ~~~~~~~~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 159 (192)
.++++++|++.+.+ +++++|+||++||++|+.+.|.++++++.+++ .+.++++|++++ +++..+++.++||+++|+
T Consensus 3 ~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 3 KVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFP 81 (104)
T ss_pred EEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEc
Confidence 78999999988755 58999999999999999999999999999877 356999999987 688899999999999999
Q ss_pred CCE-EEeEeeecCCccccCCCHHHHHHHH
Q 046498 160 NGV-HVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 160 ~g~-~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
+|+ .....| .|.. +.+++.+||
T Consensus 82 ~~~~~~~~~~--~g~~----~~~~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKY--EGDR----TLEDLIKFI 104 (104)
T ss_pred CCCcCCceEc--cCCc----CHHHHHhhC
Confidence 886 222225 8999 999998875
No 41
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.83 E-value=3.7e-20 Score=126.53 Aligned_cols=94 Identities=24% Similarity=0.341 Sum_probs=82.0
Q ss_pred hhHHHHHhcCCcEEEEEECCCChhHhhhhHHH---HHHHHHhcCCcEEEEEeCcc----cHHHHHHcCCCcCcEEEEEe-
Q 046498 88 KNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEY---KAAATELKGKAVLAKVDAIN----EIELAKRWGIQGYPTIYFFV- 159 (192)
Q Consensus 88 ~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l---~~la~~~~~~~~~~~vd~d~----~~~l~~~~~v~~~Pt~~~~~- 159 (192)
+.|+++++++++++|+||++||++|+.+.|.+ +++++.+++...++.+|+++ .++++++|++.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 56788888899999999999999999999988 68888888767799999987 57899999999999999998
Q ss_pred -CCEEEeEeeecCCccccCCCHHHHHHHHH
Q 046498 160 -NGVHVDTYYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 160 -~g~~v~~~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
+|+.+. +..|.. +.+++.++|+
T Consensus 82 ~~g~~~~---~~~G~~----~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPL---RLPGFL----TADEFLEALE 104 (104)
T ss_pred CCCCCCc---cccccc----CHHHHHHHhC
Confidence 677666 348999 9999998873
No 42
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.83 E-value=6.9e-20 Score=123.28 Aligned_cols=97 Identities=43% Similarity=0.819 Sum_probs=86.2
Q ss_pred ecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHh--cCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC
Q 046498 84 NLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATEL--KGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 84 ~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~--~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 161 (192)
++++++|.+.+.++++++|+||++||++|+.+.|.++++++.+ .+...++.+|+++++.++++|+|.++||+++|++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 5788899999998889999999999999999999999999999 46667999999999999999999999999999877
Q ss_pred -EEEeEeeecCCccccCCCHHHHHHHH
Q 046498 162 -VHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 162 -~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
+...+ | .|.. +.+++.+|+
T Consensus 82 ~~~~~~-~--~g~~----~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVK-Y--EGPR----TLESLVEFI 101 (101)
T ss_pred Cccccc-C--CCCc----CHHHHHhhC
Confidence 44442 5 8988 899998774
No 43
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.83 E-value=1.6e-19 Score=121.90 Aligned_cols=89 Identities=21% Similarity=0.376 Sum_probs=80.6
Q ss_pred HHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCC
Q 046498 93 VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRK 172 (192)
Q Consensus 93 ~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g 172 (192)
+.+++++++++||++||+.|+.+.|.++++++++++.+.++.+|+++++++++++++.++|+++++++|+.+.+. .|
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~---~g 85 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEI---SG 85 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEE---eC
Confidence 335678999999999999999999999999999987777999999999999999999999999999999888753 79
Q ss_pred ccccCCCHHHHHHHHH
Q 046498 173 KRVFLEQGDDIVNYIK 188 (192)
Q Consensus 173 ~~~~~~~~~~l~~~l~ 188 (192)
.. +.+++.++++
T Consensus 86 ~~----~~~~~~~~l~ 97 (97)
T cd02949 86 VK----MKSEYREFIE 97 (97)
T ss_pred Cc----cHHHHHHhhC
Confidence 99 9999998873
No 44
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.82 E-value=1.1e-19 Score=125.31 Aligned_cols=98 Identities=26% Similarity=0.413 Sum_probs=83.3
Q ss_pred EecChhhHHHHHhcCCcEEEEEEC--CCCh---hHhhhhHHHHHHHHHhcCCcEEEEEeCc-----ccHHHHHHcCCC--
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYA--PWCF---WSKKLAPEYKAAATELKGKAVLAKVDAI-----NEIELAKRWGIQ-- 150 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a--~wC~---~C~~~~p~l~~la~~~~~~~~~~~vd~d-----~~~~l~~~~~v~-- 150 (192)
+++++.+|++.+.+++.+||.||| |||+ +|+++.|++.+.+.. +.+++|||+ ++.++|++|+|+
T Consensus 4 v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~I~~~ 79 (116)
T cd03007 4 VDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYKLDKE 79 (116)
T ss_pred eECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhCCCcC
Confidence 889999999999999999999999 8888 777777777665532 669999994 578899999999
Q ss_pred cCcEEEEEeCCE-EEeEeeecCCc-cccCCCHHHHHHHHHHh
Q 046498 151 GYPTIYFFVNGV-HVDTYYHDRKK-RVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 151 ~~Pt~~~~~~g~-~v~~~y~~~g~-~~~~~~~~~l~~~l~~~ 190 (192)
++||+.+|++|. .....| .|. + +.+.|.+||.++
T Consensus 80 gyPTl~lF~~g~~~~~~~Y--~G~~r----~~~~lv~~v~~~ 115 (116)
T cd03007 80 SYPVIYLFHGGDFENPVPY--SGADV----TVDALQRFLKGN 115 (116)
T ss_pred CCCEEEEEeCCCcCCCccC--CCCcc----cHHHHHHHHHhc
Confidence 999999999884 222348 896 9 999999999886
No 45
>PTZ00051 thioredoxin; Provisional
Probab=99.82 E-value=2.9e-19 Score=120.60 Aligned_cols=91 Identities=34% Similarity=0.532 Sum_probs=81.0
Q ss_pred ChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEe
Q 046498 86 SDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 86 ~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
+.++++++++.+++++|+||++||++|+.+.|.++++++++++ ..|+.+|++++..++++|++.++||++++++|+.+.
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEE
Confidence 4578889998899999999999999999999999999998875 679999999999999999999999999999999988
Q ss_pred EeeecCCccccCCCHHHHHH
Q 046498 166 TYYHDRKKRVFLEQGDDIVN 185 (192)
Q Consensus 166 ~~y~~~g~~~~~~~~~~l~~ 185 (192)
+. .|.. .++|++
T Consensus 86 ~~---~G~~-----~~~~~~ 97 (98)
T PTZ00051 86 TL---LGAN-----DEALKQ 97 (98)
T ss_pred EE---eCCC-----HHHhhc
Confidence 63 6755 677653
No 46
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=5.5e-19 Score=131.41 Aligned_cols=107 Identities=15% Similarity=0.225 Sum_probs=89.9
Q ss_pred CCCceEecCh-hhHHHHHhcC---CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCc
Q 046498 78 EKENAVNLSD-KNFSDVLAKN---QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYP 153 (192)
Q Consensus 78 ~~~v~~~~~~-~~~~~~l~~~---~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 153 (192)
.+.+ .++++ ++|.+.+.+. .+++|+||++||++|+.+.|.|++++++|+. +.|++||+++. +++.+|+|.++|
T Consensus 61 ~g~v-~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~vP 137 (175)
T cd02987 61 FGKV-YELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDALP 137 (175)
T ss_pred CCeE-EEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCCCC
Confidence 4667 88888 9999887543 4899999999999999999999999999975 67999999988 899999999999
Q ss_pred EEEEEeCCEEEeEeeecCCcc---ccCCCHHHHHHHHHHh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKR---VFLEQGDDIVNYIKTK 190 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~---~~~~~~~~l~~~l~~~ 190 (192)
|+++|++|+.+.+. .|.. -..++.+.|..+|.++
T Consensus 138 Tlllyk~G~~v~~~---vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 138 ALLVYKGGELIGNF---VRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEEECCEEEEEE---echHHhcCCCCCHHHHHHHHHhc
Confidence 99999999998864 3422 1234788888888763
No 47
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.81 E-value=4.6e-19 Score=122.93 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=81.9
Q ss_pred HHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeee
Q 046498 90 FSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYH 169 (192)
Q Consensus 90 ~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~ 169 (192)
+.+.+.++..++|.||++||++|+.+.|.++++++.+ +.+.+..+|.+++++++++|+|.++||++++++|+..... +
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~-~ 92 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGI-R 92 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceE-E
Confidence 5555566777999999999999999999999999887 5567999999999999999999999999999987554432 3
Q ss_pred cCCccccCCCHHHHHHHHHHhh
Q 046498 170 DRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 170 ~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+.|.. +.+++.++|...+
T Consensus 93 ~~G~~----~~~el~~~i~~i~ 110 (113)
T cd02975 93 YYGLP----AGYEFASLIEDIV 110 (113)
T ss_pred EEecC----chHHHHHHHHHHH
Confidence 37998 8999999998765
No 48
>PTZ00102 disulphide isomerase; Provisional
Probab=99.80 E-value=7.1e-19 Score=149.67 Aligned_cols=114 Identities=19% Similarity=0.446 Sum_probs=98.5
Q ss_pred CCCCCcCCCCceEecChhhHHHHH-hcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC--cEEEEEeCcccHHHHHHc
Q 046498 71 NLTPAIDEKENAVNLSDKNFSDVL-AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK--AVLAKVDAINEIELAKRW 147 (192)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~--~~~~~vd~d~~~~l~~~~ 147 (192)
+..|....+.+ ..+++++|++.+ +.+++++|+|||+||++|+.+.|.++++++.+.+. +.++.+|++++...++++
T Consensus 349 e~~p~~~~~~v-~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~ 427 (477)
T PTZ00102 349 EPIPEEQDGPV-KVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEF 427 (477)
T ss_pred CCCCCCCCCCe-EEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcC
Confidence 33455556667 999999999874 66889999999999999999999999999998753 459999999999999999
Q ss_pred CCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 148 GIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 148 ~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+++++||+++|++|+.+...| .|.. +.+++.++|+++.
T Consensus 428 ~v~~~Pt~~~~~~~~~~~~~~--~G~~----~~~~l~~~i~~~~ 465 (477)
T PTZ00102 428 SWSAFPTILFVKAGERTPIPY--EGER----TVEGFKEFVNKHA 465 (477)
T ss_pred CCcccCeEEEEECCCcceeEe--cCcC----CHHHHHHHHHHcC
Confidence 999999999999887665446 8999 9999999999875
No 49
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.79 E-value=1e-18 Score=146.42 Aligned_cols=108 Identities=26% Similarity=0.517 Sum_probs=91.0
Q ss_pred cCCCCceEecChhhHHHHHh---cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcccH-HH-HHHcCC
Q 046498 76 IDEKENAVNLSDKNFSDVLA---KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK-AVLAKVDAINEI-EL-AKRWGI 149 (192)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~l~---~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~~~-~l-~~~~~v 149 (192)
++...| ++++.++|++.++ .+++++|+|||+||++|+.+.|.|+++++++.+. +.|++||+|.+. ++ +++|+|
T Consensus 348 ~~~~~V-v~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 348 FDSNNV-VSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred cCCCCe-EECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC
Confidence 345567 9999999999885 6789999999999999999999999999999875 569999999753 44 478999
Q ss_pred CcCcEEEEEeCCEEEeEeeecC-CccccCCCHHHHHHHHHHh
Q 046498 150 QGYPTIYFFVNGVHVDTYYHDR-KKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 150 ~~~Pt~~~~~~g~~v~~~y~~~-g~~~~~~~~~~l~~~l~~~ 190 (192)
.++||+++|++|......| . |.+ +.+.|..||+.+
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y--~~g~R----~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKY--PSEKR----DVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeC--CCCCC----CHHHHHHHHHhh
Confidence 9999999999886434447 6 478 999999999753
No 50
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.3e-19 Score=133.32 Aligned_cols=97 Identities=31% Similarity=0.486 Sum_probs=86.5
Q ss_pred ChhhHHHHHhc--CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEE
Q 046498 86 SDKNFSDVLAK--NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVH 163 (192)
Q Consensus 86 ~~~~~~~~l~~--~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 163 (192)
++..|+.-+.. ++.++|+|+|+||+||+...|.+..++.+|++ .+|++||+|+.+..+..+||+..||+++|.+|..
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 45678866644 47999999999999999999999999999987 6799999999999999999999999999999999
Q ss_pred EeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 164 VDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 164 v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+.++ .|+- +..|++.+++++
T Consensus 87 id~~---qGAd-----~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 87 IDQI---QGAD-----ASGLEEKVAKYA 106 (288)
T ss_pred eeee---cCCC-----HHHHHHHHHHHh
Confidence 9974 5754 899999998875
No 51
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.79 E-value=1.4e-18 Score=146.90 Aligned_cols=103 Identities=48% Similarity=0.839 Sum_probs=93.4
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC---cEEEEEeCcccHHHHHHcCCCcCcEEEEEe
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK---AVLAKVDAINEIELAKRWGIQGYPTIYFFV 159 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~---~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 159 (192)
.++++++|+++++++++++|+|||+||++|+.+.|.+.++++.+.+. +.|+.|||+++++++++|+|.++||+++|+
T Consensus 4 ~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 83 (462)
T TIGR01130 4 LVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFR 83 (462)
T ss_pred eECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEe
Confidence 88999999999999999999999999999999999999999887654 469999999999999999999999999999
Q ss_pred CCEE-EeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 160 NGVH-VDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 160 ~g~~-v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
+|+. +.. | .|.. +.+.+.+|+.+.++
T Consensus 84 ~g~~~~~~-~--~g~~----~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 84 NGEDSVSD-Y--NGPR----DADGIVKYMKKQSG 110 (462)
T ss_pred CCccceeE-e--cCCC----CHHHHHHHHHHhcC
Confidence 9976 433 6 8999 99999999988753
No 52
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.79 E-value=3.1e-18 Score=120.21 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=80.5
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH-----------HHHHHcC---
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI-----------ELAKRWG--- 148 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~-----------~l~~~~~--- 148 (192)
..++.+++.+.+++++.++|+|+++|||+|+.+.|.|++++++. +..++.+|+|.++ ++.++|+
T Consensus 9 ~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 9 EVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred eecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 67888999999999999999999999999999999999999983 3458888888542 4556665
Q ss_pred -CCcCcEEEEEeCCEEEeEeeecCC-ccccCCCHHHHHHHHH
Q 046498 149 -IQGYPTIYFFVNGVHVDTYYHDRK-KRVFLEQGDDIVNYIK 188 (192)
Q Consensus 149 -v~~~Pt~~~~~~g~~v~~~y~~~g-~~~~~~~~~~l~~~l~ 188 (192)
+.++||+++|++|+.+.+. .| .. +.++|.+++.
T Consensus 87 ~i~~~PT~v~~k~Gk~v~~~---~G~~~----~~~~l~~~~~ 121 (122)
T TIGR01295 87 SFMGTPTFVHITDGKQVSVR---CGSST----TAQELQDIAA 121 (122)
T ss_pred cCCCCCEEEEEeCCeEEEEE---eCCCC----CHHHHHHHhh
Confidence 5569999999999999954 67 45 6999988764
No 53
>PLN02309 5'-adenylylsulfate reductase
Probab=99.79 E-value=2e-18 Score=144.52 Aligned_cols=108 Identities=26% Similarity=0.529 Sum_probs=92.9
Q ss_pred cCCCCceEecChhhHHHHHh---cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCc-ccHHHHH-HcCC
Q 046498 76 IDEKENAVNLSDKNFSDVLA---KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK-AVLAKVDAI-NEIELAK-RWGI 149 (192)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~l~---~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d-~~~~l~~-~~~v 149 (192)
++...| ++++.++|++++. .+++++|+|||+||++|+.+.|.++++++++.+. +.|+++|++ ++.++++ +|+|
T Consensus 342 ~~~~~V-v~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I 420 (457)
T PLN02309 342 FNSQNV-VALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 420 (457)
T ss_pred cCCCCc-EECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC
Confidence 355577 9999999998874 5789999999999999999999999999999765 559999999 7788886 6999
Q ss_pred CcCcEEEEEeCCEEEeEeeecCC-ccccCCCHHHHHHHHHHh
Q 046498 150 QGYPTIYFFVNGVHVDTYYHDRK-KRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 150 ~~~Pt~~~~~~g~~v~~~y~~~g-~~~~~~~~~~l~~~l~~~ 190 (192)
.++||+++|++|......| .| .+ +.+.|.+||+.+
T Consensus 421 ~~~PTil~f~~g~~~~v~Y--~~~~R----~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKY--PSEKR----DVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeec--CCCCc----CHHHHHHHHHHh
Confidence 9999999999886544447 74 68 999999999875
No 54
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.78 E-value=3.5e-18 Score=120.53 Aligned_cols=97 Identities=19% Similarity=0.373 Sum_probs=81.9
Q ss_pred hhHHHHHhcC-CcEEEEEECCCChhHhhhhHHHH---HHHHHhcCCcEEEEEeCccc-------------HHHHHHcCCC
Q 046498 88 KNFSDVLAKN-QHVMVAFYAPWCFWSKKLAPEYK---AAATELKGKAVLAKVDAINE-------------IELAKRWGIQ 150 (192)
Q Consensus 88 ~~~~~~l~~~-~~vlv~f~a~wC~~C~~~~p~l~---~la~~~~~~~~~~~vd~d~~-------------~~l~~~~~v~ 150 (192)
+.++++.+++ ++++|+|||+||++|+.+.|.+. ++.+.+.+.+.++.+|++++ .+++.+|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 5677788888 99999999999999999999884 56667766667899998864 6899999999
Q ss_pred cCcEEEEEeC--CEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 151 GYPTIYFFVN--GVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 151 ~~Pt~~~~~~--g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
++||++++++ |+.+.+ ..|.. +.+++.++|+..+
T Consensus 84 ~~Pt~~~~~~~gg~~~~~---~~G~~----~~~~~~~~l~~~~ 119 (125)
T cd02951 84 FTPTVIFLDPEGGKEIAR---LPGYL----PPDEFLAYLEYVQ 119 (125)
T ss_pred cccEEEEEcCCCCceeEE---ecCCC----CHHHHHHHHHHHH
Confidence 9999999985 577764 38999 9999999998764
No 55
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.77 E-value=5.2e-18 Score=117.82 Aligned_cols=82 Identities=29% Similarity=0.595 Sum_probs=71.6
Q ss_pred EecChhhHHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhcC---CcEEEEEeCc--ccHHHHHHcCCCcCcEEE
Q 046498 83 VNLSDKNFSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELKG---KAVLAKVDAI--NEIELAKRWGIQGYPTIY 156 (192)
Q Consensus 83 ~~~~~~~~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~---~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~ 156 (192)
+++++++|++.+.+ +++++|+||++||++|+.+.|.++++++++.+ .+.++.+||+ ++++++++|++.++||++
T Consensus 4 ~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 4 IVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred EECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence 88999999988865 46999999999999999999999999998754 3558999985 467899999999999999
Q ss_pred EEeCCEEE
Q 046498 157 FFVNGVHV 164 (192)
Q Consensus 157 ~~~~g~~v 164 (192)
+|++|...
T Consensus 84 lf~~~~~~ 91 (114)
T cd02992 84 YFPPFSKE 91 (114)
T ss_pred EECCCCcc
Confidence 99988643
No 56
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.77 E-value=1.3e-17 Score=110.09 Aligned_cols=91 Identities=32% Similarity=0.595 Sum_probs=81.4
Q ss_pred hHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEee
Q 046498 89 NFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYY 168 (192)
Q Consensus 89 ~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y 168 (192)
+|+..++.+++++|.||++||++|+.+.+.++++++. .+...++.+|++++++++++|++.++|+++++++|+.+...
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~- 79 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV- 79 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE-
Confidence 5777777779999999999999999999999999988 55567999999999999999999999999999999877753
Q ss_pred ecCCccccCCCHHHHHHHH
Q 046498 169 HDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 169 ~~~g~~~~~~~~~~l~~~l 187 (192)
.|.. +.++|.++|
T Consensus 80 --~g~~----~~~~l~~~i 92 (93)
T cd02947 80 --VGAD----PKEELEEFL 92 (93)
T ss_pred --ecCC----CHHHHHHHh
Confidence 6888 889998876
No 57
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.73 E-value=1.3e-17 Score=129.81 Aligned_cols=100 Identities=34% Similarity=0.677 Sum_probs=90.9
Q ss_pred ChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHh----c-CCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeC
Q 046498 86 SDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATEL----K-GKAVLAKVDAINEIELAKRWGIQGYPTIYFFVN 160 (192)
Q Consensus 86 ~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~----~-~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 160 (192)
+.+|++.++...+.++|+|||+||+.++.++|.+++.++++ + +++++++|||+++..++.+|.|..+||+-+|++
T Consensus 2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 55788889988999999999999999999999999988664 4 445699999999999999999999999999999
Q ss_pred CEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 161 GVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 161 g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
|....+-| .|.+ +.+.|.++|++.+
T Consensus 82 G~~~~rEY--Rg~R----sVeaL~efi~kq~ 106 (375)
T KOG0912|consen 82 GEMMKREY--RGQR----SVEALIEFIEKQL 106 (375)
T ss_pred cchhhhhh--ccch----hHHHHHHHHHHHh
Confidence 99998879 9999 9999999999875
No 58
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.8e-18 Score=140.31 Aligned_cols=114 Identities=33% Similarity=0.574 Sum_probs=94.4
Q ss_pred cccCCCCCcCC-CCceEecChhhHHHHHh-cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC--cEEEEEeCcccHHH
Q 046498 68 RKYNLTPAIDE-KENAVNLSDKNFSDVLA-KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK--AVLAKVDAINEIEL 143 (192)
Q Consensus 68 ~~~~~~~~~~~-~~v~~~~~~~~~~~~l~-~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~--~~~~~vd~d~~~~l 143 (192)
.+++..|.-.. ++| ..+.+++|++++. .++.|||.||||||+||+++.|.+++|+++|.+. ++++++|.+.|.
T Consensus 354 ~kSqpiPe~~~~~pV-kvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd-- 430 (493)
T KOG0190|consen 354 LKSQPIPEDNDRSPV-KVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND-- 430 (493)
T ss_pred cccCCCCcccccCCe-EEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--
Confidence 34555666555 568 9999999998874 4789999999999999999999999999999875 359999999986
Q ss_pred HHHcCCCcCcEEEEEeCCE-EEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 144 AKRWGIQGYPTIYFFVNGV-HVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 144 ~~~~~v~~~Pt~~~~~~g~-~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
....++.++||+++++.|. .-...| .|.+ +.+++..++.+.
T Consensus 431 ~~~~~~~~fPTI~~~pag~k~~pv~y--~g~R----~le~~~~fi~~~ 472 (493)
T KOG0190|consen 431 VPSLKVDGFPTILFFPAGHKSNPVIY--NGDR----TLEDLKKFIKKS 472 (493)
T ss_pred CccccccccceEEEecCCCCCCCccc--CCCc----chHHHHhhhccC
Confidence 3455788899999999664 434458 9999 999999999865
No 59
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.72 E-value=9.3e-17 Score=120.99 Aligned_cols=105 Identities=14% Similarity=0.149 Sum_probs=86.1
Q ss_pred CCCCceEecChhhHHHHH-hcC--CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCc
Q 046498 77 DEKENAVNLSDKNFSDVL-AKN--QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYP 153 (192)
Q Consensus 77 ~~~~v~~~~~~~~~~~~l-~~~--~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 153 (192)
..+.+ .+++.++|...+ ..+ .+|+|+||++||++|+.+.|.|+++|++|+. ..|++||+++. ..+|++.++|
T Consensus 80 ~~G~v-~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lP 154 (192)
T cd02988 80 KFGEV-YEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLP 154 (192)
T ss_pred CCCeE-EEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCC
Confidence 34677 999999998654 333 4899999999999999999999999999975 67999999864 5899999999
Q ss_pred EEEEEeCCEEEeEeeecCCccc---cCCCHHHHHHHHHH
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRV---FLEQGDDIVNYIKT 189 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~---~~~~~~~l~~~l~~ 189 (192)
|+++|++|+.+.+. .|..- ..++.++|..+|.+
T Consensus 155 Tlliyk~G~~v~~i---vG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 155 TILVYRNGDIVKQF---IGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEEECCEEEEEE---eCchhhCCCCCCHHHHHHHHHh
Confidence 99999999999864 45310 12378888887765
No 60
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.72 E-value=7.5e-17 Score=112.11 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=70.1
Q ss_pred ChhhHHHHHhc--CCcEEEEEEC-------CCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc-------cHHHHHHcCC
Q 046498 86 SDKNFSDVLAK--NQHVMVAFYA-------PWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN-------EIELAKRWGI 149 (192)
Q Consensus 86 ~~~~~~~~l~~--~~~vlv~f~a-------~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~-------~~~l~~~~~v 149 (192)
+.++|.+.+.+ +++++|+||| +||++|+.+.|.++++++++++...|++||+++ +.++..+++|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 45677777765 6899999999 999999999999999999998767899999976 4589999999
Q ss_pred C-cCcEEEEEeCCEEEe
Q 046498 150 Q-GYPTIYFFVNGVHVD 165 (192)
Q Consensus 150 ~-~~Pt~~~~~~g~~v~ 165 (192)
. ++||+++|++|+.+.
T Consensus 88 ~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 88 TTGVPTLLRWKTPQRLV 104 (119)
T ss_pred ccCCCEEEEEcCCceec
Confidence 9 999999998886555
No 61
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.71 E-value=2.2e-17 Score=115.16 Aligned_cols=100 Identities=12% Similarity=0.198 Sum_probs=74.4
Q ss_pred hhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH-HHHHHcCCCc--CcEEEEEe-CCE
Q 046498 87 DKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI-ELAKRWGIQG--YPTIYFFV-NGV 162 (192)
Q Consensus 87 ~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~-~l~~~~~v~~--~Pt~~~~~-~g~ 162 (192)
.+.++....++++++|+|||+||++|+.+.|.+.+..+.......|+.+|+++++ ...+.|++.+ +||++++. +|+
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 3445566677899999999999999999999999987655433347777777654 4567899987 99999996 998
Q ss_pred EEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 163 HVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 163 ~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
.+.+.++..|.. +.+.+...|...
T Consensus 89 ~~~~~~~~~~~~----~~~~f~~~~~~~ 112 (117)
T cd02959 89 VHPEIINKKGNP----NYKYFYSSAAQV 112 (117)
T ss_pred CchhhccCCCCc----cccccCCCHHHH
Confidence 887544345766 666665555543
No 62
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.70 E-value=9.5e-16 Score=115.23 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=69.0
Q ss_pred hcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH-----------------------HHHHHcCCCc
Q 046498 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI-----------------------ELAKRWGIQG 151 (192)
Q Consensus 95 ~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~-----------------------~l~~~~~v~~ 151 (192)
.++++++|+||++||++|+++.|.++++.++ ...++.|+.++++ .+++.||+.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3688999999999999999999999998753 2457777765432 3455789999
Q ss_pred CcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 152 YPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 152 ~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+|+.++++ +|+++. ++.|.. +.+++.+.++.++
T Consensus 143 ~P~t~vid~~G~i~~---~~~G~~----~~~~l~~~i~~~~ 176 (185)
T PRK15412 143 APETFLIDGNGIIRY---RHAGDL----NPRVWESEIKPLW 176 (185)
T ss_pred CCeEEEECCCceEEE---EEecCC----CHHHHHHHHHHHH
Confidence 99998996 776665 448999 9999988887764
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.70 E-value=2.2e-16 Score=107.37 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=78.8
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCC--cCcEEEEEeC--CEEEeEeeecC
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQ--GYPTIYFFVN--GVHVDTYYHDR 171 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~--~~Pt~~~~~~--g~~v~~~y~~~ 171 (192)
.++++++.|+++||++|+.+.|.++++++++.+++.|+.+|+++++.+++.||+. ++|+++++++ |+.... ..
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~---~~ 87 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLM---PE 87 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCC---Cc
Confidence 3679999999999999999999999999999988889999999999999999999 9999999987 655552 24
Q ss_pred CccccCCCHHHHHHHHHHhh
Q 046498 172 KKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 172 g~~~~~~~~~~l~~~l~~~l 191 (192)
|.. +.++|.+|+.+.+
T Consensus 88 ~~~----~~~~l~~fi~~~~ 103 (103)
T cd02982 88 EEL----TAESLEEFVEDFL 103 (103)
T ss_pred ccc----CHHHHHHHHHhhC
Confidence 566 8999999998753
No 64
>PTZ00062 glutaredoxin; Provisional
Probab=99.69 E-value=4e-16 Score=118.11 Aligned_cols=90 Identities=10% Similarity=0.103 Sum_probs=78.7
Q ss_pred ChhhHHHHHhcC-CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEE
Q 046498 86 SDKNFSDVLAKN-QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHV 164 (192)
Q Consensus 86 ~~~~~~~~l~~~-~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v 164 (192)
+.+++++.++.+ +.++++|||+||++|+.+.|.+++++++|++ +.|+.||.+ |+|.++||+++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 567788888754 7789999999999999999999999999976 779999977 999999999999999999
Q ss_pred eEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 165 DTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 165 ~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
.+. .|.. +.++.+++.++.+
T Consensus 76 ~r~---~G~~-----~~~~~~~~~~~~~ 95 (204)
T PTZ00062 76 NSL---EGCN-----TSTLVSFIRGWAQ 95 (204)
T ss_pred eee---eCCC-----HHHHHHHHHHHcC
Confidence 964 6765 8899988887653
No 65
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.68 E-value=7.3e-16 Score=100.44 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=71.3
Q ss_pred EEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCC
Q 046498 100 VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQ 179 (192)
Q Consensus 100 vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~ 179 (192)
.+..||++||++|+.+.|.+++++++++....+..||++++++++++||+.++||+++ +|+. . + .|.. +
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~-~--~--~G~~----~ 70 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV-E--F--IGAP----T 70 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE-E--E--ecCC----C
Confidence 4678999999999999999999999998766799999999999999999999999976 7763 2 4 6998 8
Q ss_pred HHHHHHHHHHhh
Q 046498 180 GDDIVNYIKTKM 191 (192)
Q Consensus 180 ~~~l~~~l~~~l 191 (192)
.+++.+++.+.+
T Consensus 71 ~~~l~~~l~~~~ 82 (82)
T TIGR00411 71 KEELVEAIKKRL 82 (82)
T ss_pred HHHHHHHHHhhC
Confidence 999999998754
No 66
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.68 E-value=3.4e-16 Score=132.43 Aligned_cols=113 Identities=33% Similarity=0.570 Sum_probs=93.5
Q ss_pred cCCCCCcCCCCceEecChhhHHHHH-hcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcC---CcEEEEEeCcccHHHHH
Q 046498 70 YNLTPAIDEKENAVNLSDKNFSDVL-AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKG---KAVLAKVDAINEIELAK 145 (192)
Q Consensus 70 ~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~---~~~~~~vd~d~~~~l~~ 145 (192)
++..|....+.+ ..+++++|++.+ +.++.++|+|||+||++|+.+.|.++++++.+.+ .+.|+++|++.+. +..
T Consensus 337 se~~p~~~~~~v-~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~ 414 (462)
T TIGR01130 337 SEPIPEDDEGPV-KVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP 414 (462)
T ss_pred cCCCCccCCCcc-EEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC
Confidence 344454445667 899999999887 4578999999999999999999999999999987 4569999999874 334
Q ss_pred HcCCCcCcEEEEEeCCEEE-eEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 146 RWGIQGYPTIYFFVNGVHV-DTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 146 ~~~v~~~Pt~~~~~~g~~v-~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+++.++||+++|++|+.. ...| .|.. +.+.+.+||.++.
T Consensus 415 -~~i~~~Pt~~~~~~~~~~~~~~~--~g~~----~~~~l~~~l~~~~ 454 (462)
T TIGR01130 415 -FEVEGFPTIKFVPAGKKSEPVPY--DGDR----TLEDFSKFIAKHA 454 (462)
T ss_pred -CCccccCEEEEEeCCCCcCceEe--cCcC----CHHHHHHHHHhcC
Confidence 999999999999988653 2225 8989 9999999998864
No 67
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.66 E-value=1.4e-16 Score=124.27 Aligned_cols=87 Identities=39% Similarity=0.704 Sum_probs=78.4
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCc---EEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCC
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA---VLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRK 172 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~---~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g 172 (192)
++..++|+||||||++|+++.|.|+++.-++.+.. .++++|++..+.++.++||+|+||+.++++|..+. | .|
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d--Y--RG 117 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID--Y--RG 117 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee--c--CC
Confidence 35689999999999999999999999987776543 49999999999999999999999999999999998 8 99
Q ss_pred ccccCCCHHHHHHHHHHh
Q 046498 173 KRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 173 ~~~~~~~~~~l~~~l~~~ 190 (192)
.+ +.+.+++|-.+-
T Consensus 118 ~R----~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 118 GR----EKDAIIEFAHRC 131 (468)
T ss_pred Cc----cHHHHHHHHHhc
Confidence 99 999999987653
No 68
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.65 E-value=4.5e-15 Score=110.01 Aligned_cols=101 Identities=18% Similarity=0.328 Sum_probs=79.1
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcc----------------------
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK-AVLAKVDAIN---------------------- 139 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~---------------------- 139 (192)
...+++.+...-.++++++|+||++||++|+...+.+.++.+++++. ..++.|++|.
T Consensus 47 ~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~ 126 (173)
T PRK03147 47 TDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDK 126 (173)
T ss_pred ecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECC
Confidence 33444444322235788999999999999999999999999999875 4588887653
Q ss_pred cHHHHHHcCCCcCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 140 EIELAKRWGIQGYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 140 ~~~l~~~~~v~~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
+.++.+.|++.++|++++++ +|+.+.. + .|.. +.+++.+++++.
T Consensus 127 ~~~~~~~~~v~~~P~~~lid~~g~i~~~-~--~g~~----~~~~l~~~l~~~ 171 (173)
T PRK03147 127 GRQVIDAYGVGPLPTTFLIDKDGKVVKV-I--TGEM----TEEQLEEYLEKI 171 (173)
T ss_pred cchHHHHcCCCCcCeEEEECCCCcEEEE-E--eCCC----CHHHHHHHHHHh
Confidence 35778999999999999997 6766654 3 7999 999999988763
No 69
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.65 E-value=2.2e-15 Score=109.52 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=66.7
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc------------HHHH-HHc---CCCcCcEEEEEe-
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE------------IELA-KRW---GIQGYPTIYFFV- 159 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~------------~~l~-~~~---~v~~~Pt~~~~~- 159 (192)
++..+|+|||+||++|+++.|.+++++++++ ..++.|+.|+. .+.. ..| ++.++||+++++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 5567999999999999999999999999984 34555555532 2333 345 889999999997
Q ss_pred CCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 160 NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 160 ~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+|+.+.. ++.|.. +.+++.+.+.+++
T Consensus 128 ~G~~i~~--~~~G~~----s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYP--VLQGAV----DEAELANRMDEIL 153 (153)
T ss_pred CCCEEEE--Eeeccc----CHHHHHHHHHHhC
Confidence 6665442 237999 9999999988764
No 70
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.65 E-value=3.5e-15 Score=126.74 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=72.9
Q ss_pred hcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC-cEEEEE----------------------------eCcccHHHHH
Q 046498 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK-AVLAKV----------------------------DAINEIELAK 145 (192)
Q Consensus 95 ~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~-~~~~~v----------------------------d~d~~~~l~~ 145 (192)
+++++++|+|||+||++|+.+.|.+++++++++.. +.++.| ++|.+.++++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 36899999999999999999999999999998733 334433 3455678899
Q ss_pred HcCCCcCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 146 RWGIQGYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 146 ~~~v~~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
.|+|.++||++++. +|+++.+. .|.. +.++|.++|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~---~G~~----~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIV---KGSI----SEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEE---eCCC----CHHHHHHHHHH
Confidence 99999999998884 88888753 7999 99999999873
No 71
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.63 E-value=2e-14 Score=106.57 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=66.1
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc-------------HHHHHHcCC--CcCcEEEEEe-CCEEE
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE-------------IELAKRWGI--QGYPTIYFFV-NGVHV 164 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~-------------~~l~~~~~v--~~~Pt~~~~~-~g~~v 164 (192)
+|+||++||++|+++.|.+++++++++ +.++.|++|+. ..+.+.|++ .++|+.++++ +|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 788999999999999999999999985 45555655432 246678895 6999999996 77775
Q ss_pred eEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 165 DTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 165 ~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
...+ .|.. +.+++.+.+.+.+
T Consensus 151 ~~~~--~G~~----~~~~L~~~I~~ll 171 (181)
T PRK13728 151 LPLL--QGAT----DAAGFMARMDTVL 171 (181)
T ss_pred EEEE--ECCC----CHHHHHHHHHHHH
Confidence 4324 7999 9999999888765
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.62 E-value=3.3e-15 Score=114.87 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=76.2
Q ss_pred HHHHhcCCcEEEEEEC---CCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeE
Q 046498 91 SDVLAKNQHVMVAFYA---PWCFWSKKLAPEYKAAATELKGK-AVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDT 166 (192)
Q Consensus 91 ~~~l~~~~~vlv~f~a---~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~ 166 (192)
.+.++++ ..++.|++ +||++|+.+.|.++++++++++. +.++.+|.+++++++++|+|.++||+++|++|+.+..
T Consensus 14 ~~~~~~~-~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~ 92 (215)
T TIGR02187 14 LKELKNP-VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGI 92 (215)
T ss_pred HHhcCCC-eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEE
Confidence 3334434 44666888 99999999999999999999642 2377777779999999999999999999999988753
Q ss_pred eeecCCccccCCCHHHHHHHHHHhh
Q 046498 167 YYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 167 ~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.+ .|.. +.+++.++|+.++
T Consensus 93 ~~--~G~~----~~~~l~~~i~~~~ 111 (215)
T TIGR02187 93 RY--TGIP----AGYEFAALIEDIV 111 (215)
T ss_pred EE--eecC----CHHHHHHHHHHHH
Confidence 24 8998 8999999998764
No 73
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.60 E-value=1.1e-14 Score=102.18 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=67.1
Q ss_pred ChhhHHHHHhcCCcEEEEEECCCChhHhhhhHH-H--HHHHHHhcCCcEEEEEeCcccHHHHHH--------cCCCcCcE
Q 046498 86 SDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPE-Y--KAAATELKGKAVLAKVDAINEIELAKR--------WGIQGYPT 154 (192)
Q Consensus 86 ~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~-l--~~la~~~~~~~~~~~vd~d~~~~l~~~--------~~v~~~Pt 154 (192)
+++.++++.+++|+++|+|+|+||++|+.+.+. + .++++.+...++++++|.++.+++++. ||+.|+|+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 567788888999999999999999999999874 3 367777666678999999998877653 58999999
Q ss_pred EEEEe-CCEEEeE
Q 046498 155 IYFFV-NGVHVDT 166 (192)
Q Consensus 155 ~~~~~-~g~~v~~ 166 (192)
++++. +|+.+..
T Consensus 84 ~vfl~~~G~~~~~ 96 (124)
T cd02955 84 NVFLTPDLKPFFG 96 (124)
T ss_pred EEEECCCCCEEee
Confidence 99996 7887753
No 74
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.60 E-value=2e-14 Score=106.91 Aligned_cols=89 Identities=18% Similarity=0.265 Sum_probs=70.3
Q ss_pred HhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeC-----------------------cccHHHHHHcCCC
Q 046498 94 LAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDA-----------------------INEIELAKRWGIQ 150 (192)
Q Consensus 94 l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~-----------------------d~~~~l~~~~~v~ 150 (192)
..++++++|+||++||++|+++.|.++++.++ ...++.|+. |.+.++.+.|++.
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 34678999999999999999999999998764 234555553 3344667789999
Q ss_pred cCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 151 GYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 151 ~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
++|+.++++ +|+.+.+ +.|.. +.+++.+++.++++
T Consensus 137 ~~P~~~~id~~G~i~~~---~~G~~----~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 137 GAPETFLVDGNGVILYR---HAGPL----NNEVWTEGFLPAME 172 (173)
T ss_pred eCCeEEEEcCCceEEEE---EeccC----CHHHHHHHHHHHhh
Confidence 999888885 7876663 47999 99999999998764
No 75
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.60 E-value=6.9e-15 Score=105.91 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=58.1
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC--------cEEEEEeCcccH-------------------------H
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK--------AVLAKVDAINEI-------------------------E 142 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~--------~~~~~vd~d~~~-------------------------~ 142 (192)
++++++|+|||+||++|+++.|.|+++.+++.++ +.++.|+.|++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5789999999999999999999999988876542 447788766432 4
Q ss_pred HHHHcCCCcCcEEEEEe-CCEEEe
Q 046498 143 LAKRWGIQGYPTIYFFV-NGVHVD 165 (192)
Q Consensus 143 l~~~~~v~~~Pt~~~~~-~g~~v~ 165 (192)
++++|++.++|++++++ +|+.+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 67789999999999997 888777
No 76
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.59 E-value=1.2e-14 Score=126.10 Aligned_cols=100 Identities=22% Similarity=0.396 Sum_probs=81.3
Q ss_pred ChhhHHHHH----hcCCcEEEEEECCCChhHhhhhHHH---HHHHHHhcCCcEEEEEeCccc----HHHHHHcCCCcCcE
Q 046498 86 SDKNFSDVL----AKNQHVMVAFYAPWCFWSKKLAPEY---KAAATELKGKAVLAKVDAINE----IELAKRWGIQGYPT 154 (192)
Q Consensus 86 ~~~~~~~~l----~~~~~vlv~f~a~wC~~C~~~~p~l---~~la~~~~~~~~~~~vd~d~~----~~l~~~~~v~~~Pt 154 (192)
+.+++++.+ +++|+++|+|||+||++|+.+.+.. +++.+++++ ..++++|++++ .+++++|++.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 456676655 3478999999999999999998875 677777764 67999999864 58899999999999
Q ss_pred EEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 155 IYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 155 ~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+++|+ +|+++.. +|..|.. +++++.+++++..
T Consensus 538 ~~~~~~~G~~i~~-~r~~G~~----~~~~f~~~L~~~~ 570 (571)
T PRK00293 538 ILFFDAQGQEIPD-ARVTGFM----DAAAFAAHLRQLQ 570 (571)
T ss_pred EEEECCCCCCccc-ccccCCC----CHHHHHHHHHHhc
Confidence 99997 7877532 2458999 9999999998753
No 77
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.58 E-value=2.5e-14 Score=113.29 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=70.9
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc-----------cHHHHHHcCCCcCcEEEEEeC-CEEE
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN-----------EIELAKRWGIQGYPTIYFFVN-GVHV 164 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~-----------~~~l~~~~~v~~~Pt~~~~~~-g~~v 164 (192)
+++++|+||++||++|+.+.|.+++++++++ +.++.|++|. +..++++|||.++|+++++++ |+.+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 6899999999999999999999999999986 3465666554 357899999999999999985 6665
Q ss_pred eEeeecCCccccCCCHHHHHHHHHHh
Q 046498 165 DTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 165 ~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
.... .|.. +.++|.+.+...
T Consensus 244 ~~v~--~G~~----s~~eL~~~i~~~ 263 (271)
T TIGR02740 244 TPIG--FGVM----SADELVDRILLA 263 (271)
T ss_pred EEEE--eCCC----CHHHHHHHHHHH
Confidence 5433 6999 999998888654
No 78
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.56 E-value=1.2e-14 Score=100.32 Aligned_cols=86 Identities=29% Similarity=0.492 Sum_probs=64.9
Q ss_pred hcCCcEEEEEECCCChhHhhhhHHHHH---HHHHhcCCcEEEEEeCccc--------------------HHHHHHcCCCc
Q 046498 95 AKNQHVMVAFYAPWCFWSKKLAPEYKA---AATELKGKAVLAKVDAINE--------------------IELAKRWGIQG 151 (192)
Q Consensus 95 ~~~~~vlv~f~a~wC~~C~~~~p~l~~---la~~~~~~~~~~~vd~d~~--------------------~~l~~~~~v~~ 151 (192)
.+++++++.||++||++|+.+.+.+.+ +.+.+.+...++.++++.. .+++++|||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 357899999999999999999999885 4555555566888887653 35889999999
Q ss_pred CcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 152 YPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 152 ~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
+||+++++ +|+.+.+. .|.. ++++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~---~G~~----~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRI---PGYL----SPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEE---ESS------HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEe---cCCC----CHHHHHhhC
Confidence 99999996 89888753 7999 999998875
No 79
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.56 E-value=5.6e-14 Score=108.01 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=77.2
Q ss_pred ecChhhHHHHHhcCCcE-EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCE
Q 046498 84 NLSDKNFSDVLAKNQHV-MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGV 162 (192)
Q Consensus 84 ~~~~~~~~~~l~~~~~v-lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 162 (192)
.++.+..+.+..-++++ ++.||++||++|+.+.+.+++++.+.+ .+.+..+|.+++++++++|+|.++||++++++|.
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence 44555555554445555 555999999999999999999998854 4668899999999999999999999999998875
Q ss_pred EEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 163 HVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 163 ~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
. + .|.. +.+++.++|.+
T Consensus 198 ~----~--~G~~----~~~~l~~~l~~ 214 (215)
T TIGR02187 198 E----F--VGAY----PEEQFLEYILS 214 (215)
T ss_pred E----E--ECCC----CHHHHHHHHHh
Confidence 3 3 5988 89999999875
No 80
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.55 E-value=4.7e-14 Score=90.86 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=59.8
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCc-cccCCC
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKK-RVFLEQ 179 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~-~~~~~~ 179 (192)
-|.||++||++|+.+.|.+++++++++....+..+| +.+.+.+||+.++||+++ +|+.+- .|. . +
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~~-----~G~~~----~ 67 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELVI-----MGKIP----S 67 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEEE-----EeccC----C
Confidence 378999999999999999999999998776687777 234478899999999998 887773 475 4 4
Q ss_pred HHHHHHHH
Q 046498 180 GDDIVNYI 187 (192)
Q Consensus 180 ~~~l~~~l 187 (192)
.+++.+++
T Consensus 68 ~~~l~~~l 75 (76)
T TIGR00412 68 KEEIKEIL 75 (76)
T ss_pred HHHHHHHh
Confidence 57877765
No 81
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.4e-14 Score=118.08 Aligned_cols=97 Identities=37% Similarity=0.722 Sum_probs=84.7
Q ss_pred hhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC-EEEe
Q 046498 87 DKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG-VHVD 165 (192)
Q Consensus 87 ~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g-~~v~ 165 (192)
...+...+..++.++|.||++||++|+++.|.+.++++.+.+...++.|||+++.++|++|+|.++||+.+|..| +.+.
T Consensus 37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~ 116 (383)
T KOG0191|consen 37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPID 116 (383)
T ss_pred cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceee
Confidence 334445667788999999999999999999999999999999777999999999999999999999999999988 4444
Q ss_pred EeeecCCccccCCCHHHHHHHHHHhh
Q 046498 166 TYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 166 ~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
| .|.. +.+.+.+++.+.+
T Consensus 117 --~--~~~~----~~~~~~~~~~~~~ 134 (383)
T KOG0191|consen 117 --Y--SGPR----NAESLAEFLIKEL 134 (383)
T ss_pred --c--cCcc----cHHHHHHHHHHhh
Confidence 6 7888 8999998887654
No 82
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.54 E-value=9.2e-14 Score=98.03 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=63.4
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEe-----------------------CcccHHHHHHcCCCcC
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVD-----------------------AINEIELAKRWGIQGY 152 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd-----------------------~d~~~~l~~~~~v~~~ 152 (192)
++++++|+||++||++|+++.|.++++.++++ +.++.|+ +|.+.++++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 57899999999999999999999999988863 4455554 3455678889999999
Q ss_pred cEEEEEe-CCEEEeEeeecCCccccCCCHHHH
Q 046498 153 PTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDI 183 (192)
Q Consensus 153 Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l 183 (192)
|+.++++ +|+++.+ + .|.. +++.|
T Consensus 102 P~~~~ld~~G~v~~~-~--~G~~----~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYK-H--VGPL----TPEVW 126 (127)
T ss_pred CeEEEECCCceEEEE-E--eccC----ChHhc
Confidence 9888885 7777764 3 7988 77654
No 83
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.54 E-value=2.2e-13 Score=95.83 Aligned_cols=103 Identities=13% Similarity=0.138 Sum_probs=87.0
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCC--ChhHhhhhHHHHHHHHHhcC-CcEEEEEeCcccHHHHHHcCCCcCcEEEEEe
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPW--CFWSKKLAPEYKAAATELKG-KAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~w--C~~C~~~~p~l~~la~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 159 (192)
..++..+++.++..++..+|.|-.+- ++.+-...=.|++++++|++ ++.+++||+|++++++.+|||.++||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT 99 (132)
T ss_pred CccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEE
Confidence 33556778888877766666555433 67888888899999999984 4679999999999999999999999999999
Q ss_pred CCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 160 NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 160 ~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
+|+.+.++ .|.. +++++.++|+++++
T Consensus 100 dGk~v~~i---~G~~----~k~~l~~~I~~~L~ 125 (132)
T PRK11509 100 GGNYRGVL---NGIH----PWAELINLMRGLVE 125 (132)
T ss_pred CCEEEEEE---eCcC----CHHHHHHHHHHHhc
Confidence 99999964 7999 99999999998864
No 84
>PHA02125 thioredoxin-like protein
Probab=99.54 E-value=1.1e-13 Score=88.84 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=57.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCH
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQG 180 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~ 180 (192)
+++||++||++|+.+.|.|+++. ..++.||.+++++++++|+|.++||++ +|+.+.+. .|.. .+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~---~G~~---~~~ 66 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRF---TGVP---RNV 66 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEE---eCCC---CcH
Confidence 78999999999999999997653 358999999999999999999999987 68777653 5753 034
Q ss_pred HHHHHHH
Q 046498 181 DDIVNYI 187 (192)
Q Consensus 181 ~~l~~~l 187 (192)
.+|++.|
T Consensus 67 ~~l~~~~ 73 (75)
T PHA02125 67 AELKEKL 73 (75)
T ss_pred HHHHHHh
Confidence 5655543
No 85
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.5e-14 Score=121.31 Aligned_cols=105 Identities=21% Similarity=0.432 Sum_probs=80.4
Q ss_pred CCceEecChhhHHHHHhcC-CcEEEEEECCCChhHhhhhHHHHHHHHHhcCC---cEEEEEeCc--ccHHHHHHcCCCcC
Q 046498 79 KENAVNLSDKNFSDVLAKN-QHVMVAFYAPWCFWSKKLAPEYKAAATELKGK---AVLAKVDAI--NEIELAKRWGIQGY 152 (192)
Q Consensus 79 ~~v~~~~~~~~~~~~l~~~-~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~---~~~~~vd~d--~~~~l~~~~~v~~~ 152 (192)
..| +.++.++|+..+... +..+|.||++|||+|+.+.|.+.++++..... +.++.|||- +|..+|++++|.++
T Consensus 39 D~i-i~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 39 DPI-IELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCe-EEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 456 999999999998665 47899999999999999999999999887643 238899995 57789999999999
Q ss_pred cEEEEEeCCEE---EeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 153 PTIYFFVNGVH---VDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 153 Pt~~~~~~g~~---v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
|++.+|+.+.. .+..+ .|.. .+.++++.+.+.
T Consensus 118 Ptlryf~~~~~~~~~G~~~--~~~~----~~~ei~~~l~~~ 152 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDV--SGPV----IPSEIRDQLIRT 152 (606)
T ss_pred ceeeecCCccccCcCCCcc--cCCc----chhhHHHHHHHH
Confidence 99999964411 12212 3444 456666655443
No 86
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.54 E-value=5e-14 Score=99.92 Aligned_cols=71 Identities=23% Similarity=0.372 Sum_probs=58.3
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC---cEEEEEeCccc------------------------HHHHHHcC
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK---AVLAKVDAINE------------------------IELAKRWG 148 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~ 148 (192)
++++++|+||++||++|+.+.|.+.++.+++.+. ..++.|+.|.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 5789999999999999999999999999888643 34666666533 35778999
Q ss_pred CCcCcEEEEEe-CCEEEeE
Q 046498 149 IQGYPTIYFFV-NGVHVDT 166 (192)
Q Consensus 149 v~~~Pt~~~~~-~g~~v~~ 166 (192)
+.++|++++++ +|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999999997 8877663
No 87
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.54 E-value=8.2e-14 Score=93.30 Aligned_cols=66 Identities=30% Similarity=0.526 Sum_probs=54.6
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhc--CCcEEEEEeCcccH-------------------------HHHHHcCC
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELK--GKAVLAKVDAINEI-------------------------ELAKRWGI 149 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~--~~~~~~~vd~d~~~-------------------------~l~~~~~v 149 (192)
||+++|+|||+||++|+++.|.+.++.++++ +.+.++.|..|+.. .+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5789999999999999999999999999999 55668888876542 67789999
Q ss_pred CcCcEEEEEe-CCE
Q 046498 150 QGYPTIYFFV-NGV 162 (192)
Q Consensus 150 ~~~Pt~~~~~-~g~ 162 (192)
.++|++++++ +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999997 554
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.50 E-value=1.3e-13 Score=98.03 Aligned_cols=70 Identities=23% Similarity=0.357 Sum_probs=57.7
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC---cEEEEEeCccc-------------------------HHHHHHc
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK---AVLAKVDAINE-------------------------IELAKRW 147 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~---~~~~~vd~d~~-------------------------~~l~~~~ 147 (192)
++++++|+||++||++|+.+.|.++++++++.+. ..++.|++|+. ..+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 5789999999999999999999999999988764 34667766543 2456779
Q ss_pred CCCcCcEEEEEe-CCEEEe
Q 046498 148 GIQGYPTIYFFV-NGVHVD 165 (192)
Q Consensus 148 ~v~~~Pt~~~~~-~g~~v~ 165 (192)
++.++|++++++ +|+++.
T Consensus 96 ~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred CCCCCCEEEEECCCCCEEc
Confidence 999999999997 777665
No 89
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.49 E-value=2.8e-13 Score=94.87 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=69.7
Q ss_pred ecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEe---------------------CcccHH
Q 046498 84 NLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVD---------------------AINEIE 142 (192)
Q Consensus 84 ~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd---------------------~d~~~~ 142 (192)
+++++.++....++++++|+||++||++|+.+.|.+.++++++. ...+.+| .|.+.+
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGV 84 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcH
Confidence 34444455444567899999999999999999999999987742 2222222 134567
Q ss_pred HHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHH
Q 046498 143 LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNY 186 (192)
Q Consensus 143 l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~ 186 (192)
++++|++.++|+++++++|++.. +..|.. +.+++.+.
T Consensus 85 ~~~~~~i~~~P~~~vid~~gi~~---~~~g~~----~~~~~~~~ 121 (123)
T cd03011 85 ISARWGVSVTPAIVIVDPGGIVF---VTTGVT----SEWGLRLR 121 (123)
T ss_pred HHHhCCCCcccEEEEEcCCCeEE---EEeccC----CHHHHHhh
Confidence 99999999999999998666433 348999 99998764
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.48 E-value=2.5e-13 Score=124.97 Aligned_cols=89 Identities=16% Similarity=0.338 Sum_probs=74.3
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCc-EEEEEeC---------------------------cccHHHHHHc
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA-VLAKVDA---------------------------INEIELAKRW 147 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~-~~~~vd~---------------------------d~~~~l~~~~ 147 (192)
++++++|+|||+||++|+.+.|.|+++.++|+++. .++.|.+ |.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 57899999999999999999999999999998763 3666632 2234677899
Q ss_pred CCCcCcEEEEE-eCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 148 GIQGYPTIYFF-VNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 148 ~v~~~Pt~~~~-~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
++.++|+++++ ++|+++.+ +.|.. ..+++.+++.+.+
T Consensus 499 ~V~~iPt~ilid~~G~iv~~---~~G~~----~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQ---LSGEG----HRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEE---Eeccc----CHHHHHHHHHHHH
Confidence 99999999999 58988885 37988 8999999988764
No 91
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.47 E-value=1.2e-12 Score=97.56 Aligned_cols=84 Identities=12% Similarity=0.026 Sum_probs=62.2
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHH-hcC-CcE-EEEEeCcc-----------------------------cHHH
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATE-LKG-KAV-LAKVDAIN-----------------------------EIEL 143 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~-~~~-~~~-~~~vd~d~-----------------------------~~~l 143 (192)
.||..+|+|||+||++|+.++|.+++++++ ++- +.. ...||.|+ +..+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 489999999999999999999999999754 221 111 35566543 2245
Q ss_pred HHHcCCCcCcEE-EEEe-CCEEEeEeeecCCccccCCCHHHHHHH
Q 046498 144 AKRWGIQGYPTI-YFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNY 186 (192)
Q Consensus 144 ~~~~~v~~~Pt~-~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~ 186 (192)
+..||+.++|+. ++++ +|+.+. ++.|.. +.+++.+.
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~---~~~G~l----~~ee~e~~ 175 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKF---VKEGAL----SDSDIQTV 175 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEE---EEeCCC----CHHHHHHH
Confidence 678999999888 6775 777766 448998 88777653
No 92
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.43 E-value=9.5e-13 Score=82.52 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=52.8
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEE
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHV 164 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v 164 (192)
++.|+++||++|+.+.+.++++++.++ .+.+..+|+++++++++++|+.++||+++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 678999999999999999999987654 36799999999999999999999999855 55443
No 93
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.41 E-value=6.8e-12 Score=86.98 Aligned_cols=96 Identities=10% Similarity=0.197 Sum_probs=77.8
Q ss_pred hHHHHHhcCCcEEEEEECCCChhHhhhhHH-H--HHHHHHhcCCcEEEEEeCc--ccHHHHHHcCCCcCcEEEEEe--CC
Q 046498 89 NFSDVLAKNQHVMVAFYAPWCFWSKKLAPE-Y--KAAATELKGKAVLAKVDAI--NEIELAKRWGIQGYPTIYFFV--NG 161 (192)
Q Consensus 89 ~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~-l--~~la~~~~~~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~--~g 161 (192)
.++...+++|+++|+|+++||++|+.+... | .++.+.+.+..++..+|.+ +...++..|++.++|+++++. +|
T Consensus 9 a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g 88 (114)
T cd02958 9 AKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTG 88 (114)
T ss_pred HHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccC
Confidence 345555678999999999999999999764 3 4566677666778888887 456789999999999999996 57
Q ss_pred EEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 162 VHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 162 ~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+.+.+. .|.. +++++.+.|++..
T Consensus 89 ~~l~~~---~G~~----~~~~f~~~L~~~~ 111 (114)
T cd02958 89 EVLKVW---SGNI----TPEDLLSQLIEFL 111 (114)
T ss_pred cEeEEE---cCCC----CHHHHHHHHHHHH
Confidence 887754 7999 9999999888753
No 94
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.40 E-value=2.7e-12 Score=97.46 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=66.7
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc-------c----HHHHHHcCC--------------
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN-------E----IELAKRWGI-------------- 149 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~-------~----~~l~~~~~v-------------- 149 (192)
++++++|+|||+||++|+.+.|.|+++.+++.++.. ++.|++++ . ...++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 578999999999999999999999999999987644 88887631 1 223344432
Q ss_pred ----------------------CcCc---EEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 150 ----------------------QGYP---TIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 150 ----------------------~~~P---t~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
..+| +.++++ +|+++.+ +.|.. +++++.+.|++++
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~---~~g~~----~~~~l~~~I~~ll 178 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAY---FSPRT----EPLELEKKIAELL 178 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEE---eCCCC----CHHHHHHHHHHHH
Confidence 1122 567774 8888874 37888 8889998888775
No 95
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.39 E-value=3e-12 Score=88.44 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=53.5
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEe-Cc--c-----------------cHHHHHHcCCCcCcEE
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVD-AI--N-----------------EIELAKRWGIQGYPTI 155 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd-~d--~-----------------~~~l~~~~~v~~~Pt~ 155 (192)
++++++|+||++||++|+.+.|.++++++++.+...++.+. .+ + +.++.+.|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 47899999999999999999999999998887655555552 11 1 1255667888899999
Q ss_pred EEEe-CCEEEe
Q 046498 156 YFFV-NGVHVD 165 (192)
Q Consensus 156 ~~~~-~g~~v~ 165 (192)
++++ +|+.+.
T Consensus 100 ~vid~~G~v~~ 110 (114)
T cd02967 100 VLLDEAGVIAA 110 (114)
T ss_pred EEECCCCeEEe
Confidence 9997 665543
No 96
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.39 E-value=4.6e-12 Score=98.18 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=69.0
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCc-EEEEEeCcc--------cH---HHH-HHcCC-------------
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA-VLAKVDAIN--------EI---ELA-KRWGI------------- 149 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~-~~~~vd~d~--------~~---~l~-~~~~v------------- 149 (192)
++++++|+||++||++|+.+.|.|+++.++|.++. .++.|+++. .+ +.+ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 57899999999999999999999999999998764 488888641 11 222 22221
Q ss_pred ---------------------CcCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 150 ---------------------QGYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 150 ---------------------~~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
...|+.++++ +|+.+.+ | .|.. +++++.+.|+++++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~-~--~G~~----~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER-Y--PPTT----SPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE-E--CCCC----CHHHHHHHHHHHhc
Confidence 2248899996 7877775 4 8999 99999999998763
No 97
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.37 E-value=3.9e-12 Score=86.92 Aligned_cols=71 Identities=32% Similarity=0.548 Sum_probs=61.4
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcC-CcEEEEEeCccc-----------------------HHHHHHcCCCc
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKG-KAVLAKVDAINE-----------------------IELAKRWGIQG 151 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~-~~~~~~vd~d~~-----------------------~~l~~~~~v~~ 151 (192)
.+++++|.||++||++|+...+.+.++.++++. ...++.|++|.+ ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 478999999999999999999999999999963 355999999885 67899999999
Q ss_pred CcEEEEEe-CCEEEeE
Q 046498 152 YPTIYFFV-NGVHVDT 166 (192)
Q Consensus 152 ~Pt~~~~~-~g~~v~~ 166 (192)
+|++++++ +|+.+.+
T Consensus 98 ~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 98 LPTTFLIDRDGRIRAR 113 (116)
T ss_pred cceEEEECCCCcEEEE
Confidence 99999996 6666653
No 98
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.37 E-value=6.3e-12 Score=83.30 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=64.3
Q ss_pred CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccC
Q 046498 98 QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFL 177 (192)
Q Consensus 98 ~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~ 177 (192)
..-+..|+++||++|....+.++++++.+++ +.+..+|.++.++++++|||.++||+++ +|+.+. .|..
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~-i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~-----~G~~--- 81 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPN-IEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG-----FGRM--- 81 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCC-ceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE-----eCCC---
Confidence 3458889999999999999999999988764 6799999999999999999999999964 787665 5877
Q ss_pred CCHHHHH
Q 046498 178 EQGDDIV 184 (192)
Q Consensus 178 ~~~~~l~ 184 (192)
+.+++.
T Consensus 82 -~~~e~~ 87 (89)
T cd03026 82 -TLEEIL 87 (89)
T ss_pred -CHHHHh
Confidence 767654
No 99
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.37 E-value=3e-12 Score=92.38 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=61.9
Q ss_pred hcCCcEEEEEECC-CChhHhhhhHHHHHHHHHhcCCc-EEEEEeCccc---------------------HHHHHHcCCC-
Q 046498 95 AKNQHVMVAFYAP-WCFWSKKLAPEYKAAATELKGKA-VLAKVDAINE---------------------IELAKRWGIQ- 150 (192)
Q Consensus 95 ~~~~~vlv~f~a~-wC~~C~~~~p~l~~la~~~~~~~-~~~~vd~d~~---------------------~~l~~~~~v~- 150 (192)
.++++++|+||++ ||++|+...|.+.++.+++.++. .++.|..+.+ ..+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4688999999999 99999999999999999977664 4766665433 3778899988
Q ss_pred --------cCcEEEEEe-CCEEEeEeeecCCcc
Q 046498 151 --------GYPTIYFFV-NGVHVDTYYHDRKKR 174 (192)
Q Consensus 151 --------~~Pt~~~~~-~g~~v~~~y~~~g~~ 174 (192)
++|+++++. +|+++.. +.|..
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~---~~g~~ 135 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYR---HVGPD 135 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEE---EESSB
T ss_pred ccccccCCeecEEEEEECCCEEEEE---EeCCC
Confidence 999999996 7766663 36776
No 100
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.36 E-value=9.1e-12 Score=105.62 Aligned_cols=96 Identities=26% Similarity=0.434 Sum_probs=78.6
Q ss_pred hhHHHHHhcCC--cEEEEEECCCChhHhhhhHHH---HHHHHHhcCCcEEEEEeCccc----HHHHHHcCCCcCcEEEEE
Q 046498 88 KNFSDVLAKNQ--HVMVAFYAPWCFWSKKLAPEY---KAAATELKGKAVLAKVDAINE----IELAKRWGIQGYPTIYFF 158 (192)
Q Consensus 88 ~~~~~~l~~~~--~vlv~f~a~wC~~C~~~~p~l---~~la~~~~~~~~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~ 158 (192)
..+++.+.+++ +|+|||||+||-.||++++.. .+...+.++ .+..++|++++ .++.++||+-+.|++++|
T Consensus 463 ~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff 541 (569)
T COG4232 463 AELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGVPTYLFF 541 (569)
T ss_pred HHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 37888887765 999999999999999998864 244455555 56999999875 367889999999999999
Q ss_pred e-CCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 159 V-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 159 ~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
. +|++...+ .|.. +++.+.+++++..
T Consensus 542 ~~~g~e~~~l---~gf~----~a~~~~~~l~~~~ 568 (569)
T COG4232 542 GPQGSEPEIL---TGFL----TADAFLEHLERAA 568 (569)
T ss_pred CCCCCcCcCC---ccee----cHHHHHHHHHHhc
Confidence 7 77776653 8999 9999999998753
No 101
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.35 E-value=5.8e-12 Score=88.77 Aligned_cols=71 Identities=17% Similarity=0.329 Sum_probs=57.4
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCc---------------------------ccHHHHHHc
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAI---------------------------NEIELAKRW 147 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d---------------------------~~~~l~~~~ 147 (192)
++++++|+||++||++|+...|.++++.+++.+... ++.|+.+ ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999986543 7677541 123567789
Q ss_pred CCCcCcEEEEEe-CCEEEeE
Q 046498 148 GIQGYPTIYFFV-NGVHVDT 166 (192)
Q Consensus 148 ~v~~~Pt~~~~~-~g~~v~~ 166 (192)
++.++|+.++++ +|+.+.+
T Consensus 102 ~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCCcCCeEEEECCCCcEEEE
Confidence 999999999996 6766653
No 102
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.1e-12 Score=104.64 Aligned_cols=105 Identities=38% Similarity=0.656 Sum_probs=89.3
Q ss_pred CceEecChhhHHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhc--CCcEEEEEeCcccHHHHHHcCCCcCcEEE
Q 046498 80 ENAVNLSDKNFSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELK--GKAVLAKVDAINEIELAKRWGIQGYPTIY 156 (192)
Q Consensus 80 ~v~~~~~~~~~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~--~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 156 (192)
.+ ..++..++...... +..++|.||+|||++|+.+.|.++++++.+. ..+.++.+|++....++.+++|.++||+.
T Consensus 145 ~v-~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 145 EV-FELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLK 223 (383)
T ss_pred ce-EEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEE
Confidence 36 88889999887654 5689999999999999999999999999886 33449999999889999999999999999
Q ss_pred EEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 157 FFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 157 ~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+|++|......| .|.+ +.+.+.+|+.+..
T Consensus 224 ~f~~~~~~~~~~--~~~R----~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 224 LFPPGEEDIYYY--SGLR----DSDSIVSFVEKKE 252 (383)
T ss_pred EecCCCcccccc--cccc----cHHHHHHHHHhhc
Confidence 999887722224 7888 9999999998754
No 103
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.34 E-value=2.2e-11 Score=91.85 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=61.4
Q ss_pred hcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEe-------------C-----cccHHHHHHcCCCcCcEEE
Q 046498 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVD-------------A-----INEIELAKRWGIQGYPTIY 156 (192)
Q Consensus 95 ~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd-------------~-----d~~~~l~~~~~v~~~Pt~~ 156 (192)
.++++++|+||++||++|+++.|.+.++.++....+.++..| . ....++++.|++.++|+.+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 357899999999999999999999999987754333333311 0 1134677899999999999
Q ss_pred EEe-CCEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 157 FFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 157 ~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
+++ +|+... .|.. ...+++.+.++.
T Consensus 152 lID~~G~I~~-----~g~~---~~~~~le~ll~~ 177 (189)
T TIGR02661 152 LLDQDGKIRA-----KGLT---NTREHLESLLEA 177 (189)
T ss_pred EECCCCeEEE-----ccCC---CCHHHHHHHHHH
Confidence 986 665554 3432 046677776654
No 104
>PLN02412 probable glutathione peroxidase
Probab=99.32 E-value=2.6e-11 Score=89.66 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=68.9
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCc--------ccHHH----HHHcC--------------
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAI--------NEIEL----AKRWG-------------- 148 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d--------~~~~l----~~~~~-------------- 148 (192)
++++++|+||++||++|+...|.++++.++|.+... ++.|+++ ...++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 578999999999999999999999999999997644 8888764 22222 12211
Q ss_pred --------------------CCcCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 149 --------------------IQGYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 149 --------------------v~~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
+...|+.++++ +|+.+.+ + .|.. +++++.+.|+++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~-~--~g~~----~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQR-Y--APTT----SPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEE-E--CCCC----CHHHHHHHHHHHHh
Confidence 33358999995 7777775 3 7999 99999999988763
No 105
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.29 E-value=1.9e-11 Score=79.77 Aligned_cols=71 Identities=34% Similarity=0.462 Sum_probs=55.2
Q ss_pred hhHHHHHhcCCcEEEEEECCCChhHhhhhHHH---HHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEe
Q 046498 88 KNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEY---KAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159 (192)
Q Consensus 88 ~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l---~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 159 (192)
+.++++.+++++++|+|+++||++|+.+...+ .++.+.+.++++.+.+|.++........+ .++|+++++.
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 44556667899999999999999999998877 45666566678899999987765443222 7799999985
No 106
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.25 E-value=8.8e-11 Score=85.53 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=66.1
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCc-EEEEEeC--------cccH---HHHHH-cCC-------------
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKA-VLAKVDA--------INEI---ELAKR-WGI------------- 149 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~-~~~~vd~--------d~~~---~l~~~-~~v------------- 149 (192)
+|++++|+|||+||++|+...|.++++.++|++.. .++.|++ +... +.+++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 57889999999999999999999999999998754 4888875 1111 22221 221
Q ss_pred -------------CcCcE----EEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 150 -------------QGYPT----IYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 150 -------------~~~Pt----~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.+.|+ .++++ +|+.+.+ | .|.. +.+++.+.|++++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~-~--~g~~----~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF-W--RPEE----PVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEE-E--CCCC----CHHHHHHHHHHhC
Confidence 13786 77775 7777764 4 8999 9999999988764
No 107
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.24 E-value=2.7e-11 Score=85.20 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=55.1
Q ss_pred hhHHHHHhcCCcEEEEEECCCChhHhhhhHHH---HHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEe-CCEE
Q 046498 88 KNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEY---KAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV-NGVH 163 (192)
Q Consensus 88 ~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l---~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~-~g~~ 163 (192)
+.++...+++|+++|+|+++||++|+.+.... .++.+.....++.+.++.|....-....+ .++||++|++ +|+.
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~v 92 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTV 92 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCC
Confidence 34455557789999999999999999998764 34555554445555666552211111234 6899999996 7777
Q ss_pred EeEeeecCCcc
Q 046498 164 VDTYYHDRKKR 174 (192)
Q Consensus 164 v~~~y~~~g~~ 174 (192)
+.++ .|..
T Consensus 93 i~~i---~Gy~ 100 (130)
T cd02960 93 RADI---TGRY 100 (130)
T ss_pred cccc---cccc
Confidence 7654 4643
No 108
>smart00594 UAS UAS domain.
Probab=99.24 E-value=3.1e-10 Score=79.64 Aligned_cols=96 Identities=5% Similarity=0.074 Sum_probs=70.8
Q ss_pred hhHHHHHhcCCcEEEEEECCCChhHhhhhHHH---HHHHHHhcCCcEEEEEeCcc--cHHHHHHcCCCcCcEEEEEe-CC
Q 046498 88 KNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEY---KAAATELKGKAVLAKVDAIN--EIELAKRWGIQGYPTIYFFV-NG 161 (192)
Q Consensus 88 ~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l---~~la~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~-~g 161 (192)
+..+...+++|.++|+|+++||++|+.+.... .++.+.+.+..++..+|++. ..+++.+|++.++|++.++. +|
T Consensus 18 ~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 18 AAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCC
Confidence 33445556789999999999999999996653 35556666566677788764 45789999999999999995 54
Q ss_pred --EEEeEeeecCCccccCCCHHHHHHHH
Q 046498 162 --VHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 162 --~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
+......+..|.. +++++...|
T Consensus 98 g~~~~~~~~~~~G~~----~~~~l~~~l 121 (122)
T smart00594 98 GQRVIEWVGVVEGEI----SPEELMTFL 121 (122)
T ss_pred CceeEEEeccccCCC----CHHHHHHhh
Confidence 2111112447999 999998875
No 109
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.22 E-value=1e-10 Score=85.08 Aligned_cols=83 Identities=13% Similarity=0.212 Sum_probs=60.7
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc--------c---HHHHHH-cC--------------
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN--------E---IELAKR-WG-------------- 148 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~--------~---~~l~~~-~~-------------- 148 (192)
++++++|+|||+||+ |+.+.|.++++.+++.++.. ++.|+++. . .+.+++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 478999999999999 99999999999999986544 88886532 1 122322 22
Q ss_pred ---------CCcCc-----------EEEEEe-CCEEEeEeeecCCccccCCCHHHHHHH
Q 046498 149 ---------IQGYP-----------TIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNY 186 (192)
Q Consensus 149 ---------v~~~P-----------t~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~ 186 (192)
+.++| |.++++ +|+++.+ + .|.. +++++.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~-~--~G~~----~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR-F--APTT----DPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE-E--CCCC----CHHHHHhc
Confidence 23456 677884 8888875 3 8998 88887654
No 110
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.3e-11 Score=89.10 Aligned_cols=84 Identities=19% Similarity=0.332 Sum_probs=72.2
Q ss_pred Eec-ChhhHHHHHhcC--CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcccHHHHHHcCCC------cC
Q 046498 83 VNL-SDKNFSDVLAKN--QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAINEIELAKRWGIQ------GY 152 (192)
Q Consensus 83 ~~~-~~~~~~~~l~~~--~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~~~~l~~~~~v~------~~ 152 (192)
... +++.+++.+.++ ..++|.|+|.|.+.|+...|.+.+|..+|..... |++||+...++.+++|+|+ ..
T Consensus 127 kyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQL 206 (265)
T KOG0914|consen 127 KYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQL 206 (265)
T ss_pred eeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccC
Confidence 445 455566666544 5899999999999999999999999999987665 9999999999999999986 68
Q ss_pred cEEEEEeCCEEEeE
Q 046498 153 PTIYFFVNGVHVDT 166 (192)
Q Consensus 153 Pt~~~~~~g~~v~~ 166 (192)
||+++|++|+++.+
T Consensus 207 PT~ilFq~gkE~~R 220 (265)
T KOG0914|consen 207 PTYILFQKGKEVSR 220 (265)
T ss_pred CeEEEEccchhhhc
Confidence 99999999998875
No 111
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.16 E-value=7.2e-10 Score=82.14 Aligned_cols=91 Identities=19% Similarity=0.320 Sum_probs=69.1
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcc-----------------------------cHHHHH
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK-AVLAKVDAIN-----------------------------EIELAK 145 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~-----------------------------~~~l~~ 145 (192)
++++++|+||++||+.|....+.+.++.++++++ +.++.|.+|. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 5789999999999999999999999999999853 4588887653 125567
Q ss_pred HcCCCcCcEEEEEe-CCEEEeEeeecC-------CccccCCCHHHHHHHHHHhh
Q 046498 146 RWGIQGYPTIYFFV-NGVHVDTYYHDR-------KKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 146 ~~~v~~~Pt~~~~~-~g~~v~~~y~~~-------g~~~~~~~~~~l~~~l~~~l 191 (192)
.|++...|++++++ +|+++..- ... +.. +.+++.+.|+..+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~-~~~~~~~~~~~~~----~~~~~~~~i~~~l 152 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRG-RIDDSRPGNDPPV----TGRDLRAALDALL 152 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEee-cccCCcccccccc----cHHHHHHHHHHHH
Confidence 89999999999996 66665421 001 223 5688888888765
No 112
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.12 E-value=1.6e-09 Score=86.60 Aligned_cols=110 Identities=26% Similarity=0.468 Sum_probs=79.6
Q ss_pred CCCcCCCCceEecChhhHHHHHhcCCcEEEEEECCCChhHhhhh------H-HHHHHHHHhcCCcE-EEEEeCcccHHHH
Q 046498 73 TPAIDEKENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLA------P-EYKAAATELKGKAV-LAKVDAINEIELA 144 (192)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~------p-~l~~la~~~~~~~~-~~~vd~d~~~~l~ 144 (192)
.|.++..+-+++++.+||++++++.+.++|+||.+--. -+..+ . .++-.|+-+..+.. |+.||..++..++
T Consensus 27 fP~YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klA 105 (383)
T PF01216_consen 27 FPEYDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLA 105 (383)
T ss_dssp SSS-SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHH
T ss_pred CccCCCccceEEcchhHHHHHHHhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHH
Confidence 34555554449999999999999999999999998742 22222 2 33444555666666 9999999999999
Q ss_pred HHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 145 KRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 145 ~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+++|+...+++++|++|+.+. | .|.+ +++.|..||...+
T Consensus 106 KKLgv~E~~SiyVfkd~~~IE--y--dG~~----saDtLVeFl~dl~ 144 (383)
T PF01216_consen 106 KKLGVEEEGSIYVFKDGEVIE--Y--DGER----SADTLVEFLLDLL 144 (383)
T ss_dssp HHHT--STTEEEEEETTEEEE--E---S------SHHHHHHHHHHHH
T ss_pred HhcCccccCcEEEEECCcEEE--e--cCcc----CHHHHHHHHHHhc
Confidence 999999999999999999999 8 8999 9999999998764
No 113
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.09 E-value=7.8e-10 Score=82.95 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=64.0
Q ss_pred cCCcE-EEEEECCCChhHhhhhHHHHHHHHHhcCCc-EEEEEeCcc-------c-HHH----HHHc--------------
Q 046498 96 KNQHV-MVAFYAPWCFWSKKLAPEYKAAATELKGKA-VLAKVDAIN-------E-IEL----AKRW-------------- 147 (192)
Q Consensus 96 ~~~~v-lv~f~a~wC~~C~~~~p~l~~la~~~~~~~-~~~~vd~d~-------~-~~l----~~~~-------------- 147 (192)
+++++ ++.+||+||++|+++.|.++++.++|.++. .++.|+++. . .++ .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 46754 456699999999999999999999998754 488887631 0 111 1121
Q ss_pred ----------------------CCCcCcE---EEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 148 ----------------------GIQGYPT---IYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 148 ----------------------~v~~~Pt---~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
++.++|+ .++++ +|+++.+ | .|.. +.+++.+.|.+++.
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~-~--~g~~----~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY-F--SPKV----NPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE-E--CCCC----CHHHHHHHHHHHhc
Confidence 3446784 46775 8877774 3 7988 89999998888763
No 114
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.08 E-value=1e-09 Score=74.47 Aligned_cols=69 Identities=32% Similarity=0.614 Sum_probs=62.2
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCc-ccHHHHHHcC--CCcCcEEEEEeCCEEEe
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI-NEIELAKRWG--IQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d-~~~~l~~~~~--v~~~Pt~~~~~~g~~v~ 165 (192)
+++++++||++||++|+.+.|.+.++++++.....+..+|.. ..+++...|+ +..+|++.++.+|..+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 103 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVD 103 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhh
Confidence 678999999999999999999999999999875669999997 7889999999 99999999998887654
No 115
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.03 E-value=1.8e-09 Score=77.08 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=65.2
Q ss_pred cCCcEEEEEE-CCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcc---------------------cHHHHHHcCCCcC
Q 046498 96 KNQHVMVAFY-APWCFWSKKLAPEYKAAATELKGK-AVLAKVDAIN---------------------EIELAKRWGIQGY 152 (192)
Q Consensus 96 ~~~~vlv~f~-a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~---------------------~~~l~~~~~v~~~ 152 (192)
++++++|+|| +.||+.|....+.+.++.+++.+. ..++.|..|. ...+++.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3789999999 589999999999999999888754 3477776543 3367778898888
Q ss_pred ---------cEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 153 ---------PTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 153 ---------Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
|++++++ +|+.+.+ + .|.. ..+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~-~--~g~~----~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKV-W--RKVK----PKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEE-E--ecCC----ccchHHHHh
Confidence 8999997 6777665 3 6887 677666543
No 116
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.2e-08 Score=72.86 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=72.6
Q ss_pred HHHHHhcCCcEEEEEECCCChhHhhhhHHH---HHHHHHhcCCcEEEEEeCcc----------------cHHHHHHcCCC
Q 046498 90 FSDVLAKNQHVMVAFYAPWCFWSKKLAPEY---KAAATELKGKAVLAKVDAIN----------------EIELAKRWGIQ 150 (192)
Q Consensus 90 ~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l---~~la~~~~~~~~~~~vd~d~----------------~~~l~~~~~v~ 150 (192)
.+.+..++++.++.|-++.|+.|..+...+ .++.+.+.+...++.+++.. .+++++.|+++
T Consensus 35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 344445688999999999999999997765 45666666666677777642 24899999999
Q ss_pred cCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHH
Q 046498 151 GYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 151 ~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
++||+++|+ +|+.+..+ .|.+ .++++...++
T Consensus 115 stPtfvFfdk~Gk~Il~l---PGY~----ppe~Fl~vlk 146 (182)
T COG2143 115 STPTFVFFDKTGKTILEL---PGYM----PPEQFLAVLK 146 (182)
T ss_pred cCceEEEEcCCCCEEEec---CCCC----CHHHHHHHHH
Confidence 999999996 88888864 8999 9999876554
No 117
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.02 E-value=6.3e-11 Score=89.67 Aligned_cols=97 Identities=28% Similarity=0.503 Sum_probs=86.7
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcccHHHHHHcCCCcCcEEEEEeCC
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAINEIELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 161 (192)
+.++.+|+..++.. -+++.|+|+||+.|+...|.++.++.--.+-.+ +++||+..++-+.-+|-+...||++..++|
T Consensus 27 ~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG 104 (248)
T KOG0913|consen 27 TRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG 104 (248)
T ss_pred EEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc
Confidence 88999999999864 379999999999999999999999877666555 999999999999999999999999999999
Q ss_pred EEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 162 VHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 162 ~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
.--. | .|.+ +..+++.+++.
T Consensus 105 eFrr--y--sgaR----dk~dfisf~~~ 124 (248)
T KOG0913|consen 105 EFRR--Y--SGAR----DKNDFISFEEH 124 (248)
T ss_pred cccc--c--cCcc----cchhHHHHHHh
Confidence 6655 7 9999 99999998864
No 118
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.02 E-value=9e-10 Score=79.17 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=57.7
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC---cEEEEEeCccc-------------------------HHHHHHc
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK---AVLAKVDAINE-------------------------IELAKRW 147 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~---~~~~~vd~d~~-------------------------~~l~~~~ 147 (192)
.||.|.++|-|.||+|||.+.|.+.++.+...+. .-++-|+.|.. +++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4689999999999999999999999999888776 33555555432 2677899
Q ss_pred CCCcCcEEEEEe-CCEEEeE
Q 046498 148 GIQGYPTIYFFV-NGVHVDT 166 (192)
Q Consensus 148 ~v~~~Pt~~~~~-~g~~v~~ 166 (192)
+|.++|++.+++ +|..+..
T Consensus 112 ~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred ccCcCceeEEecCCCCEehH
Confidence 999999999997 7767763
No 119
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.99 E-value=6.9e-09 Score=76.72 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=55.8
Q ss_pred cCCcEEEEEECCC-ChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc-----------------------cHHHHHHcCCCc
Q 046498 96 KNQHVMVAFYAPW-CFWSKKLAPEYKAAATELKGKAVLAKVDAIN-----------------------EIELAKRWGIQG 151 (192)
Q Consensus 96 ~~~~vlv~f~a~w-C~~C~~~~p~l~~la~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~ 151 (192)
++++++|+||++| |++|..+.|.++++++++. ...++.|..|. ...+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 4789999999999 9999999999999999985 35577776542 226778899987
Q ss_pred Cc---------EEEEEe-CCEEEeE
Q 046498 152 YP---------TIYFFV-NGVHVDT 166 (192)
Q Consensus 152 ~P---------t~~~~~-~g~~v~~ 166 (192)
.| +.++++ +|+++..
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~ 146 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYS 146 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEE
Confidence 77 888886 7766654
No 120
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.96 E-value=5.8e-09 Score=72.77 Aligned_cols=69 Identities=25% Similarity=0.511 Sum_probs=57.4
Q ss_pred cCCcEEEEEECC-CChhHhhhhHHHHHHHHHhcCCcE-EEEEeCccc---------------------HHHHHHcCCC--
Q 046498 96 KNQHVMVAFYAP-WCFWSKKLAPEYKAAATELKGKAV-LAKVDAINE---------------------IELAKRWGIQ-- 150 (192)
Q Consensus 96 ~~~~vlv~f~a~-wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~~---------------------~~l~~~~~v~-- 150 (192)
.+++++|.||++ ||+.|+...+.++++.++++.+.. ++.|..|.. .++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 578999999999 999999999999999999987544 888876543 3677889998
Q ss_pred ----cCcEEEEEeCCEEE
Q 046498 151 ----GYPTIYFFVNGVHV 164 (192)
Q Consensus 151 ----~~Pt~~~~~~g~~v 164 (192)
..|+++++..++.+
T Consensus 104 ~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTSEESEEEEEEETTSBE
T ss_pred cCCceEeEEEEECCCCEE
Confidence 99999999844444
No 121
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.93 E-value=9.4e-09 Score=73.95 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=32.9
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcc
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK-AVLAKVDAIN 139 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~ 139 (192)
+..+++.||++||++|+...|.+.++.+++.+. +.++.|..+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 334455556999999999999999999999654 3477777643
No 122
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.92 E-value=9.5e-09 Score=81.08 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=78.6
Q ss_pred CCCceEecC-hhhHHHHHhc---CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCc
Q 046498 78 EKENAVNLS-DKNFSDVLAK---NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYP 153 (192)
Q Consensus 78 ~~~v~~~~~-~~~~~~~l~~---~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 153 (192)
.+.| .+++ ++.|-+.+.+ +..|+|+||-+.++.|..+...|..||++|+. +.|++|..+..+ +..+|.....|
T Consensus 124 fG~v-~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LP 200 (265)
T PF02114_consen 124 FGEV-YEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLP 200 (265)
T ss_dssp --SE-EE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-S
T ss_pred CceE-EEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCC
Confidence 4567 8885 4778887754 34799999999999999999999999999997 679999988765 67889999999
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
|+++|++|..+....+.....-..++.++|..+|.++
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999998886432111111233678888888754
No 123
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.92 E-value=1.2e-08 Score=64.37 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=52.0
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHH----HHHHcCCCcCcEEEEEeCCEEEeEeeecCCcccc
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE----LAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVF 176 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~ 176 (192)
+..|+++||++|+...+.+++. ...+..+|+++++. +.+.+++.++|++++. |+. . .| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~----~--~g-~-- 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI----I--VG-F-- 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE----E--ee-C--
Confidence 5679999999999999888652 24588899987654 4567999999999874 543 2 36 5
Q ss_pred CCCHHHHHHHH
Q 046498 177 LEQGDDIVNYI 187 (192)
Q Consensus 177 ~~~~~~l~~~l 187 (192)
++++|.++|
T Consensus 65 --~~~~i~~~i 73 (74)
T TIGR02196 65 --DPEKLDQLL 73 (74)
T ss_pred --CHHHHHHHh
Confidence 688888876
No 124
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.92 E-value=1.4e-08 Score=75.47 Aligned_cols=92 Identities=13% Similarity=0.201 Sum_probs=65.1
Q ss_pred cCCcEEEEEE-CCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcc----------------------------cHHHHH
Q 046498 96 KNQHVMVAFY-APWCFWSKKLAPEYKAAATELKGK-AVLAKVDAIN----------------------------EIELAK 145 (192)
Q Consensus 96 ~~~~vlv~f~-a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~----------------------------~~~l~~ 145 (192)
++++++|+|| ++||++|....+.|+++++++.+. +.++.|.+|. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 899999999999999999998754 3366665543 224566
Q ss_pred HcCCC------cCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 146 RWGIQ------GYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 146 ~~~v~------~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
.||+. ..|++++++ +|+++... .+..-...+.+++.+.|+++
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~---~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHIT---VNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEE---ecCCCCCCCHHHHHHHHHHh
Confidence 78876 578999997 77666543 33321112567788877653
No 125
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.91 E-value=1.6e-08 Score=76.15 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=64.9
Q ss_pred cCCcEEEEEE-CCCChhHhhhhHHHHHHHHHhcCCc-EEEEEeCcc-------------------------cHHHHHHcC
Q 046498 96 KNQHVMVAFY-APWCFWSKKLAPEYKAAATELKGKA-VLAKVDAIN-------------------------EIELAKRWG 148 (192)
Q Consensus 96 ~~~~vlv~f~-a~wC~~C~~~~p~l~~la~~~~~~~-~~~~vd~d~-------------------------~~~l~~~~~ 148 (192)
++++++|+|| ++||++|....+.|+++.+++.+.. .++.|..|. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4788999999 9999999999999999999886543 366665542 236678889
Q ss_pred CC------cCcEEEEEe-CCEEEeEeeecCC--ccccCCCHHHHHHHHHH
Q 046498 149 IQ------GYPTIYFFV-NGVHVDTYYHDRK--KRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 149 v~------~~Pt~~~~~-~g~~v~~~y~~~g--~~~~~~~~~~l~~~l~~ 189 (192)
+. ..|+.++++ +|.+....+ ..+ .. +.+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~-~~~~~~~----~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEI-TDNGIGR----DASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEE-eCCCCCC----CHHHHHHHHHH
Confidence 86 469999996 777666532 122 23 67778777753
No 126
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.91 E-value=1.9e-08 Score=73.14 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=57.1
Q ss_pred cCCcEEEEEECC-CChhHhhhhHHHHHHHHHhcCC-cEEEEEeCccc---------------------HHHHHHcCCCcC
Q 046498 96 KNQHVMVAFYAP-WCFWSKKLAPEYKAAATELKGK-AVLAKVDAINE---------------------IELAKRWGIQGY 152 (192)
Q Consensus 96 ~~~~vlv~f~a~-wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~~---------------------~~l~~~~~v~~~ 152 (192)
++++++|+||++ ||+.|....+.+.++.+++.++ +.++.|..|.. ..+++.||+...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999986 6888999999999999998765 34777776432 356678887654
Q ss_pred ------------cEEEEEe-CCEEEeEeeecCCcc
Q 046498 153 ------------PTIYFFV-NGVHVDTYYHDRKKR 174 (192)
Q Consensus 153 ------------Pt~~~~~-~g~~v~~~y~~~g~~ 174 (192)
|+.++++ +|+++.. | .|..
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~-~--~g~~ 140 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHV-F--DKFK 140 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEE-E--cCCC
Confidence 6778886 7776664 4 6765
No 127
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.91 E-value=1.6e-08 Score=72.57 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=55.7
Q ss_pred cCCcEEEEEECCC-ChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc-----------------------HHHHHHcCCCc
Q 046498 96 KNQHVMVAFYAPW-CFWSKKLAPEYKAAATELKGKAVLAKVDAINE-----------------------IELAKRWGIQG 151 (192)
Q Consensus 96 ~~~~vlv~f~a~w-C~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~-----------------------~~l~~~~~v~~ 151 (192)
.+++++|+||++| |++|+...|.++++.+++.+ ..++.|+.|.. ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4789999999999 69999999999999999864 56777776421 35667788753
Q ss_pred ------CcEEEEEe-CCEEEeEe
Q 046498 152 ------YPTIYFFV-NGVHVDTY 167 (192)
Q Consensus 152 ------~Pt~~~~~-~g~~v~~~ 167 (192)
.|+.++++ +|+++...
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEE
Confidence 68999996 77776643
No 128
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.89 E-value=8.9e-09 Score=75.03 Aligned_cols=81 Identities=19% Similarity=0.440 Sum_probs=58.6
Q ss_pred cChhhHHHHHhcCCcEEEEEECCCChhHhhhhH-HH--HHHHHHhcCCcEEEEEeCcccHHHHHHc--------CCCcCc
Q 046498 85 LSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAP-EY--KAAATELKGKAVLAKVDAINEIELAKRW--------GIQGYP 153 (192)
Q Consensus 85 ~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p-~l--~~la~~~~~~~~~~~vd~d~~~~l~~~~--------~v~~~P 153 (192)
.+++.++...+++|+++|.++++||..|+.|.. .+ .++++.+...++-++||.++.+++...| |.-|+|
T Consensus 25 w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 25 WGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred CCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 456788888889999999999999999999875 34 4677777766788899999999998888 889999
Q ss_pred EEEEEe-CCEEEe
Q 046498 154 TIYFFV-NGVHVD 165 (192)
Q Consensus 154 t~~~~~-~g~~v~ 165 (192)
+.+++. +|+.+.
T Consensus 105 l~vfltPdg~p~~ 117 (163)
T PF03190_consen 105 LTVFLTPDGKPFF 117 (163)
T ss_dssp EEEEE-TTS-EEE
T ss_pred ceEEECCCCCeee
Confidence 999996 777665
No 129
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.88 E-value=7.8e-09 Score=66.06 Aligned_cols=58 Identities=22% Similarity=0.378 Sum_probs=44.1
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHH-----cCCCcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKR-----WGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~-----~~v~~~Pt~~~~~~g~~v~ 165 (192)
++.||++||++|+++.+.+.++. ..+-.+|+++++..... +++.++|++ ++.+|..+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec
Confidence 56899999999999999887653 23567888877766555 389999997 577775443
No 130
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.88 E-value=1.4e-08 Score=61.32 Aligned_cols=60 Identities=35% Similarity=0.674 Sum_probs=51.2
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHH---HcCCCcCcEEEEEeCC
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAK---RWGIQGYPTIYFFVNG 161 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~---~~~v~~~Pt~~~~~~g 161 (192)
++.||++||++|+++.+.+.++ +.......+..+|++....... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4555556799999998876654 7899999999999877
No 131
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.80 E-value=1e-07 Score=73.15 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=66.9
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCc-----------ccHHHHHHcCCCcCcEEEEEe-CC-EE
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI-----------NEIELAKRWGIQGYPTIYFFV-NG-VH 163 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d-----------~~~~l~~~~~v~~~Pt~~~~~-~g-~~ 163 (192)
++.-|+.||.+.|+.|+.+.|.+..++++|+ +.+..|++| .+..+++++||..+|+++++. ++ +.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 5677999999999999999999999999994 456666666 357899999999999999996 44 44
Q ss_pred EeEeeecCCccccCCCHHHHHHHH
Q 046498 164 VDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 164 v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
...- .|.. +.++|.+-|
T Consensus 198 ~pv~---~G~~----s~~~L~~ri 214 (215)
T PF13728_consen 198 YPVS---QGFM----SLDELEDRI 214 (215)
T ss_pred EEEe---eecC----CHHHHHHhh
Confidence 4443 4999 999987654
No 132
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.79 E-value=4.2e-08 Score=69.38 Aligned_cols=95 Identities=15% Similarity=0.276 Sum_probs=56.5
Q ss_pred cChhhHHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHc---CCCcCcEEEEEe-
Q 046498 85 LSDKNFSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRW---GIQGYPTIYFFV- 159 (192)
Q Consensus 85 ~~~~~~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~---~v~~~Pt~~~~~- 159 (192)
++++..+.+... .+..++-|..+|||.|+...|.+.++++..++ ..+-.+..|+++++..+| |...+|++++++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 344444433332 34568889999999999999999999998764 557777778887776654 678999999996
Q ss_pred CCEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 160 NGVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 160 ~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
+|+.+.+ + |.+ ++.+.+++.+
T Consensus 107 ~~~~lg~-w---ger-----P~~~~~~~~~ 127 (129)
T PF14595_consen 107 DGKELGR-W---GER-----PKEVQELVDE 127 (129)
T ss_dssp T--EEEE-E---ESS------HHHH-----
T ss_pred CCCEeEE-E---cCC-----CHHHhhcccc
Confidence 6788876 4 777 7777766654
No 133
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.79 E-value=4.3e-08 Score=73.42 Aligned_cols=42 Identities=5% Similarity=0.028 Sum_probs=36.5
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCc
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAI 138 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d 138 (192)
+|+++||.|||+||++|+ ..|.|+++.++|+++.. ++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 578999999999999997 58899999999987654 8888874
No 134
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.78 E-value=1.1e-07 Score=61.05 Aligned_cols=72 Identities=21% Similarity=0.363 Sum_probs=55.7
Q ss_pred EEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCC-ccccCCCHH
Q 046498 103 AFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRK-KRVFLEQGD 181 (192)
Q Consensus 103 ~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g-~~~~~~~~~ 181 (192)
.+++++|+.|......++++++.++ ..+-.+|..+.+++ .+||+.++|++++ ||+.+. .| .. +.+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~~-----~G~~p----~~~ 69 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVVF-----VGRVP----SKE 69 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEEE-----ESS------HHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEEE-----EecCC----CHH
Confidence 3468889999999999999999884 45667777777777 9999999999944 676554 58 77 899
Q ss_pred HHHHHHH
Q 046498 182 DIVNYIK 188 (192)
Q Consensus 182 ~l~~~l~ 188 (192)
++.++|+
T Consensus 70 el~~~l~ 76 (76)
T PF13192_consen 70 ELKELLE 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9998875
No 135
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.77 E-value=1.1e-07 Score=71.41 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=65.7
Q ss_pred cCCcEEEEEE-CCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc-------------------------cHHHHHHcC
Q 046498 96 KNQHVMVAFY-APWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN-------------------------EIELAKRWG 148 (192)
Q Consensus 96 ~~~~vlv~f~-a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~-------------------------~~~l~~~~~ 148 (192)
.+++++|.|| +.||+.|..+.+.+.++.+++.+... ++.|..|. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4678999999 99999999999999999999865433 66665432 347788999
Q ss_pred C----CcC--cEEEEEe-CCEEEeEeee-cCCccccCCCHHHHHHHHHH
Q 046498 149 I----QGY--PTIYFFV-NGVHVDTYYH-DRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 149 v----~~~--Pt~~~~~-~g~~v~~~y~-~~g~~~~~~~~~~l~~~l~~ 189 (192)
+ .++ |+.++++ +|++...... ..... +.+++.+.|+.
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~----~~~eil~~l~a 154 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGR----DASDLLRKIKA 154 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCC----CHHHHHHHHHh
Confidence 8 366 9999997 7766554210 11234 68888887764
No 136
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.76 E-value=9.8e-08 Score=68.80 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=59.3
Q ss_pred CcEEEEEE-CCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCc---------------------cc--HHHHHHcCCC--
Q 046498 98 QHVMVAFY-APWCFWSKKLAPEYKAAATELKGK-AVLAKVDAI---------------------NE--IELAKRWGIQ-- 150 (192)
Q Consensus 98 ~~vlv~f~-a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d---------------------~~--~~l~~~~~v~-- 150 (192)
++++|.|| ++||+.|....|.++++.+++.+. +.++.|..| .. ..+++.||+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 77888887 999999999999999999999753 347777643 22 4677788887
Q ss_pred --cCc--EEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 151 --GYP--TIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 151 --~~P--t~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
++| ++++++ +|+.+... .|...-..+..++.+.|
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~---~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAW---VSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cCCCccceEEEECCCCEEEEEE---ecCCcccccchhHHHHh
Confidence 333 788886 77766643 34220011556665544
No 137
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.75 E-value=9.2e-08 Score=72.87 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=64.8
Q ss_pred cCCcEEE-EEECCCChhHhhhhHHHHHHHHHhcCCc-EEEEEeCcc---------------------------cHHHHHH
Q 046498 96 KNQHVMV-AFYAPWCFWSKKLAPEYKAAATELKGKA-VLAKVDAIN---------------------------EIELAKR 146 (192)
Q Consensus 96 ~~~~vlv-~f~a~wC~~C~~~~p~l~~la~~~~~~~-~~~~vd~d~---------------------------~~~l~~~ 146 (192)
+++.++| .||++||+.|..+.+.|.++.+++.++. .++.|.+|. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4565554 6899999999999999999999987543 366665542 2367778
Q ss_pred cCCC------cCcEEEEEe-CCEEEeEe-eecCCccccCCCHHHHHHHHHHh
Q 046498 147 WGIQ------GYPTIYFFV-NGVHVDTY-YHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 147 ~~v~------~~Pt~~~~~-~g~~v~~~-y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
||+. .+|++++++ +|++.... |...+.+ +.+++.+.|+.+
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr----~~~ellr~l~~l 153 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGR----NIDEIIRITKAL 153 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCC----CHHHHHHHHHHh
Confidence 8884 589999997 66554422 2123446 889998888764
No 138
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.73 E-value=9.7e-08 Score=66.26 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=51.1
Q ss_pred hhHHHHHh----cCCcEEEEEEC-------CCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH-------HHHH--Hc
Q 046498 88 KNFSDVLA----KNQHVMVAFYA-------PWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI-------ELAK--RW 147 (192)
Q Consensus 88 ~~~~~~l~----~~~~vlv~f~a-------~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~-------~l~~--~~ 147 (192)
++|.+.++ ++++++|.|++ +|||.|+...|.+++..+..++...++.+.+...+ ..-. ++
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~ 85 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL 85 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence 34555553 45789999997 59999999999999988887776678888774322 3333 49
Q ss_pred CCCcCcEEEEEeCCEE
Q 046498 148 GIQGYPTIYFFVNGVH 163 (192)
Q Consensus 148 ~v~~~Pt~~~~~~g~~ 163 (192)
++.++||++-+..++.
T Consensus 86 ~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 86 KLKGIPTLIRWETGER 101 (119)
T ss_dssp ---SSSEEEECTSS-E
T ss_pred eeeecceEEEECCCCc
Confidence 9999999999987644
No 139
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.72 E-value=2e-07 Score=61.08 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=57.6
Q ss_pred EEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc----HHHHHHcC--CCcCcEEEEEeCCEEEeEeeecCCc
Q 046498 100 VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE----IELAKRWG--IQGYPTIYFFVNGVHVDTYYHDRKK 173 (192)
Q Consensus 100 vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~----~~l~~~~~--v~~~Pt~~~~~~g~~v~~~y~~~g~ 173 (192)
-++.|+.+||++|++....|+++..++.+ +.+..+|++++ .++.+..+ ..++|+++ .+|+.+ |.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i-------gg 71 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI-------GG 71 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE-------cC
Confidence 36789999999999999999999987643 55888888764 35555555 48899975 467544 33
Q ss_pred cccCCCHHHHHHHHHHhhC
Q 046498 174 RVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 174 ~~~~~~~~~l~~~l~~~l~ 192 (192)
.+++.++++.++|
T Consensus 72 ------~~~~~~~~~~~~~ 84 (85)
T PRK11200 72 ------CTDFEAYVKENLG 84 (85)
T ss_pred ------HHHHHHHHHHhcc
Confidence 3788888887765
No 140
>PRK15000 peroxidase; Provisional
Probab=98.72 E-value=1.7e-07 Score=71.27 Aligned_cols=91 Identities=13% Similarity=0.249 Sum_probs=66.7
Q ss_pred cCCcEEEEEECC-CChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc----------------------------cHHHHH
Q 046498 96 KNQHVMVAFYAP-WCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN----------------------------EIELAK 145 (192)
Q Consensus 96 ~~~~vlv~f~a~-wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~----------------------------~~~l~~ 145 (192)
++++++|.||+. ||+.|..+.+.|.++++++.++.. ++.|.+|. ..++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 468999999995 999999999999999999975543 77776652 125667
Q ss_pred HcCCC------cCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 146 RWGIQ------GYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 146 ~~~v~------~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
.||+. ..|+.++++ +|.+.... .|....+-+.+++.+.|+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~---~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQV---VNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEE---ecCCCCCCCHHHHHHHHHH
Confidence 78887 689999997 77665542 3432222278888887764
No 141
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.67 E-value=9.6e-07 Score=65.64 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=87.1
Q ss_pred CceEecChhhHHHHHhcCCc-EEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCC--cCcEEE
Q 046498 80 ENAVNLSDKNFSDVLAKNQH-VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQ--GYPTIY 156 (192)
Q Consensus 80 ~v~~~~~~~~~~~~l~~~~~-vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~--~~Pt~~ 156 (192)
.+ ..++.+++..+...+.+ +++.|..........+...+++++++++++..|+.+|++..+.+++.+|+. ..|+++
T Consensus 78 ~v-~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 78 LV-PELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp SC-EEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEE
T ss_pred cc-cccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEE
Confidence 35 89999999999988866 788888777888899999999999999998889999999999999999998 899999
Q ss_pred EEe-CCEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 157 FFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 157 ~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
+++ ++......+ .|.. +.+.+.+|+++
T Consensus 157 i~~~~~~~~~~~~--~~~~----~~~~i~~Fl~d 184 (184)
T PF13848_consen 157 IFDSNKGKYYYLP--EGEI----TPESIEKFLND 184 (184)
T ss_dssp EEETTTSEEEE----SSCG----CHHHHHHHHHH
T ss_pred EEECCCCcEEcCC--CCCC----CHHHHHHHhcC
Confidence 997 333333212 7888 99999999874
No 142
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.66 E-value=8.5e-08 Score=70.87 Aligned_cols=81 Identities=28% Similarity=0.387 Sum_probs=73.6
Q ss_pred ChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEe
Q 046498 86 SDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 86 ~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
+..+|-+...+...|+++||-+.-..|+-+..-|+.||+.+-+ ..|++||....|-++.+++|..+|++.+|++|..+.
T Consensus 73 ~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D 151 (211)
T KOG1672|consen 73 SEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVD 151 (211)
T ss_pred cHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEE
Confidence 3677777777778899999999999999999999999999876 469999999999999999999999999999999888
Q ss_pred Ee
Q 046498 166 TY 167 (192)
Q Consensus 166 ~~ 167 (192)
.+
T Consensus 152 ~i 153 (211)
T KOG1672|consen 152 YV 153 (211)
T ss_pred EE
Confidence 64
No 143
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.66 E-value=1.4e-07 Score=61.22 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=45.7
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH-----HHHHHcCCCcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI-----ELAKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~-----~l~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
++.|+++||++|++..+.++++. .++...+..+|.+++. .+.+.+|+.++|++ |-+|+.+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ig 66 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFIG 66 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 46799999999999999999976 4433567777776543 36667899999997 34665443
No 144
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.65 E-value=1.3e-07 Score=67.37 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=56.5
Q ss_pred cCCcEEEEEE-CCCChhHhhhhHHHHHHHHHhcCC-cEEEEEeCcc----------------------cHHHHHHcCCCc
Q 046498 96 KNQHVMVAFY-APWCFWSKKLAPEYKAAATELKGK-AVLAKVDAIN----------------------EIELAKRWGIQG 151 (192)
Q Consensus 96 ~~~~vlv~f~-a~wC~~C~~~~p~l~~la~~~~~~-~~~~~vd~d~----------------------~~~l~~~~~v~~ 151 (192)
.+++++|.|| +.||+.|....|.+.++.+++... ..++.|..+. ...+.+.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5789999999 789999999999999999998533 4477776542 235667788776
Q ss_pred Cc---------EEEEEe-CCEEEeEeeecCCcc
Q 046498 152 YP---------TIYFFV-NGVHVDTYYHDRKKR 174 (192)
Q Consensus 152 ~P---------t~~~~~-~g~~v~~~y~~~g~~ 174 (192)
.| +.++++ +|+++.. +.|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~---~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYV---EVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEE---EecCC
Confidence 65 788887 5766664 25654
No 145
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.63 E-value=6e-07 Score=70.72 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=64.6
Q ss_pred cCCcEEEEEE-CCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc----------------------------cHHHHH
Q 046498 96 KNQHVMVAFY-APWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN----------------------------EIELAK 145 (192)
Q Consensus 96 ~~~~vlv~f~-a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~----------------------------~~~l~~ 145 (192)
+++++++.|| ++||++|..+.+.+.++.+++.+... ++.|.+|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4567777777 89999999999999999999875433 66665543 236778
Q ss_pred HcCCC-----cCcEEEEEe-CCEEEeEe-eecCCccccCCCHHHHHHHHHH
Q 046498 146 RWGIQ-----GYPTIYFFV-NGVHVDTY-YHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 146 ~~~v~-----~~Pt~~~~~-~g~~v~~~-y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
.||+. ..|+.++++ +|.+.... +...... +.+++.+.|+.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr----~v~eiLr~l~a 223 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGR----SVDETLRLFDA 223 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCC----CHHHHHHHHHH
Confidence 89985 589999997 77665543 2112234 68888877754
No 146
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.62 E-value=5.9e-07 Score=69.03 Aligned_cols=91 Identities=14% Similarity=0.163 Sum_probs=65.6
Q ss_pred cCCc-EEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc---------------------------cHHHHHH
Q 046498 96 KNQH-VMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN---------------------------EIELAKR 146 (192)
Q Consensus 96 ~~~~-vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~---------------------------~~~l~~~ 146 (192)
.++. +|+.||++||+.|..+.+.+.++.+++.++.. ++.|.+|. +.++++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3555 57899999999999999999999999975543 77776653 2256778
Q ss_pred cCCC-------cCcEEEEEe-CCEEEeEe-eecCCccccCCCHHHHHHHHHHh
Q 046498 147 WGIQ-------GYPTIYFFV-NGVHVDTY-YHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 147 ~~v~-------~~Pt~~~~~-~g~~v~~~-y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
||+. ..|+++++. +|++.... |...... +.+++.+.|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr----~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGR----NVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCC----CHHHHHHHHHHh
Confidence 8873 579999997 67665543 2112234 688888877653
No 147
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.62 E-value=1.3e-07 Score=67.47 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=36.6
Q ss_pred cCCcEEEEEECCCChh-HhhhhHHHHHHHHHhcCC----cEEEEEeCc
Q 046498 96 KNQHVMVAFYAPWCFW-SKKLAPEYKAAATELKGK----AVLAKVDAI 138 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~-C~~~~p~l~~la~~~~~~----~~~~~vd~d 138 (192)
++++++|.||++||++ |....+.++++.+++.+. +.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 999999999999999764 457777654
No 148
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.61 E-value=1e-06 Score=61.16 Aligned_cols=91 Identities=13% Similarity=0.178 Sum_probs=68.0
Q ss_pred HHHHhcCCcEEEEEECC----CChhHhhh--hHHHHHHHHHhcCCcEEEEEeCccc--HHHHHHcCCCcCcEEEEEe--C
Q 046498 91 SDVLAKNQHVMVAFYAP----WCFWSKKL--APEYKAAATELKGKAVLAKVDAINE--IELAKRWGIQGYPTIYFFV--N 160 (192)
Q Consensus 91 ~~~l~~~~~vlv~f~a~----wC~~C~~~--~p~l~~la~~~~~~~~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~~--~ 160 (192)
+...++.|.++|++|++ ||..|+.. .|.+.+.. .+...+...|++.. .+++..+++.++|++.++. +
T Consensus 11 ~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 11 NDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred HHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---HcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC
Confidence 33445689999999999 99999776 44444443 44567888888654 5789999999999999992 3
Q ss_pred C--EEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 161 G--VHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 161 g--~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+ ..+.++ .|.. +++++...|....
T Consensus 88 ~~~~vv~~i---~G~~----~~~~ll~~L~~~~ 113 (116)
T cd02991 88 NRMTIVGRL---EGLI----QPEDLINRLTFIM 113 (116)
T ss_pred CceEEEEEE---eCCC----CHHHHHHHHHHHH
Confidence 3 345543 7999 9999999887653
No 149
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.1e-07 Score=71.94 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=84.9
Q ss_pred CCCcCCCCceEecChhhHHHHHhc---CCcEEEEEECCC----ChhHhhhhHHHHHHHHHhcC--------CcEEEEEeC
Q 046498 73 TPAIDEKENAVNLSDKNFSDVLAK---NQHVMVAFYAPW----CFWSKKLAPEYKAAATELKG--------KAVLAKVDA 137 (192)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~~l~~---~~~vlv~f~a~w----C~~C~~~~p~l~~la~~~~~--------~~~~~~vd~ 137 (192)
..+-++..| +.++++.|..++.. +-.++|.|.|.. |.-|+++..++.-++..+.. +..|..||.
T Consensus 34 ~~~ts~~~V-I~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~ 112 (331)
T KOG2603|consen 34 MSWTSESGV-IRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDY 112 (331)
T ss_pred HhccCCCCe-EEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEec
Confidence 333456678 99999999999864 346788999854 99999999999999877532 334999999
Q ss_pred cccHHHHHHcCCCcCcEEEEEe--CCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 138 INEIELAKRWGIQGYPTIYFFV--NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 138 d~~~~l~~~~~v~~~Pt~~~~~--~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
|+.+++.+.++++..|++++|. .|+..... ..++ ...+..+|++.+|+++..
T Consensus 113 ~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~-~~d~-~~~g~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 113 DESPQVFQQLNLNNVPHLVLFSPAKGNKKRSD-QMDQ-QDLGFEAEQIAQFVADRT 166 (331)
T ss_pred cccHHHHHHhcccCCCeEEEeCCCccccccCc-cchh-hhcchhHHHHHHHHHHhh
Confidence 9999999999999999999993 33322110 0011 111115899999988753
No 150
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.59 E-value=1.4e-06 Score=68.41 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc-----------HHHHHHcCCCcCcEEEEEe-C-CEE
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE-----------IELAKRWGIQGYPTIYFFV-N-GVH 163 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~-----------~~l~~~~~v~~~Pt~~~~~-~-g~~ 163 (192)
++.-++.||.+.|+.|+++.|.+..++++|+ +.+..|++|.. ...++++|+..+|+++++. + ++.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4577999999999999999999999999996 44666666643 4588999999999999996 3 444
Q ss_pred EeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 164 VDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 164 v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
...-| |.. +.++|.+-+...
T Consensus 228 ~pv~~---G~i----S~deL~~Ri~~v 247 (256)
T TIGR02739 228 SPLAY---GFI----SQDELKERILNV 247 (256)
T ss_pred EEEee---ccC----CHHHHHHHHHHH
Confidence 44445 999 999998876543
No 151
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.56 E-value=6.9e-07 Score=60.68 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=71.2
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhh---hhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEe
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKK---LAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~---~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 159 (192)
..++.++++.++..+...++ |.+..|..+.+ ..=.+-|+.+.+++....+.++-+...++..+||+..+|++++++
T Consensus 12 ~~vd~~~ld~~l~~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R 90 (107)
T PF07449_consen 12 PRVDADTLDAFLAAPGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFR 90 (107)
T ss_dssp EEE-CCCHHHHHHCCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEE
T ss_pred eeechhhHHHHHhCCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEE
Confidence 66778889999988766554 55555544444 444788999999998777778877788999999999999999999
Q ss_pred CCEEEeEeeecCCccccCCCHHH
Q 046498 160 NGVHVDTYYHDRKKRVFLEQGDD 182 (192)
Q Consensus 160 ~g~~v~~~y~~~g~~~~~~~~~~ 182 (192)
+|+.+..+ .|.+ ++++
T Consensus 91 ~g~~lG~i---~gi~----dW~d 106 (107)
T PF07449_consen 91 DGRYLGAI---EGIR----DWAD 106 (107)
T ss_dssp TTEEEEEE---ESSS----THHH
T ss_pred CCEEEEEe---cCee----cccc
Confidence 99999976 6888 8765
No 152
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.56 E-value=9e-07 Score=67.46 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=62.1
Q ss_pred cEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc---------------------------cHHHHHHcCCC
Q 046498 99 HVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN---------------------------EIELAKRWGIQ 150 (192)
Q Consensus 99 ~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~---------------------------~~~l~~~~~v~ 150 (192)
.+++.||++||+.|..+.+.|.++++++.++.. ++.|.+|. ...+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456689999999999999999999999976543 77776653 23667788875
Q ss_pred ----c----CcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 151 ----G----YPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 151 ----~----~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
+ .|+.++++ +|++.... .+....+-+.+++.+.|+.+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~---~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLIL---YYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEE---ecCCCCCCCHHHHHHHHHHH
Confidence 2 34688886 66655432 34221111678888887653
No 153
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=4.5e-07 Score=61.92 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=57.5
Q ss_pred hhHHHHHh---cCCcEEEEEEC--------CCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc-------HHHHHHcCC
Q 046498 88 KNFSDVLA---KNQHVMVAFYA--------PWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE-------IELAKRWGI 149 (192)
Q Consensus 88 ~~~~~~l~---~~~~vlv~f~a--------~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~-------~~l~~~~~v 149 (192)
+.|++.++ +++.++|+|++ +|||.|.+..|.+.+..+..+....|+.+++.+- .......++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 45665553 45669999998 7999999999999999988888777999998543 344455666
Q ss_pred -CcCcEEEEEeC
Q 046498 150 -QGYPTIYFFVN 160 (192)
Q Consensus 150 -~~~Pt~~~~~~ 160 (192)
.++||++-+++
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 89999999974
No 154
>PRK13189 peroxiredoxin; Provisional
Probab=98.52 E-value=1.3e-06 Score=67.44 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=63.5
Q ss_pred cCC-cEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc---------------------------cHHHHHH
Q 046498 96 KNQ-HVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN---------------------------EIELAKR 146 (192)
Q Consensus 96 ~~~-~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~---------------------------~~~l~~~ 146 (192)
.++ .+|+.||++||+.|..+.+.|.++++++.++.. ++.|.+|. ..++++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 355 456688999999999999999999999875433 66666542 2356778
Q ss_pred cCCC-------cCcEEEEEe-CCEEEeEee-ecCCccccCCCHHHHHHHHHHh
Q 046498 147 WGIQ-------GYPTIYFFV-NGVHVDTYY-HDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 147 ~~v~-------~~Pt~~~~~-~g~~v~~~y-~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
||+. ..|++++++ +|.+....+ .....+ +.+++.+.|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr----~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGR----NMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCC----CHHHHHHHHHHh
Confidence 8875 468899997 776544321 112344 678888887653
No 155
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.49 E-value=1.6e-06 Score=66.62 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=63.3
Q ss_pred cCCcE-EEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc---------------------------cHHHHHH
Q 046498 96 KNQHV-MVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN---------------------------EIELAKR 146 (192)
Q Consensus 96 ~~~~v-lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~---------------------------~~~l~~~ 146 (192)
+++.+ |+.||++||+.|..+.+.|.++++++..+.. ++.+.+|. +.++++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 35554 4589999999999999999999999975443 77776653 2356677
Q ss_pred cCCC-------cCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 147 WGIQ-------GYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 147 ~~v~-------~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
||+. ..|+.++++ +|.+....+ +....+-+.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~---~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILY---YPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEe---cCCCCCCCHHHHHHHHHHh
Confidence 8863 368999997 666555422 2211111788888887653
No 156
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=2.5e-06 Score=58.77 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=79.2
Q ss_pred hhhHHHHHhc--CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEE
Q 046498 87 DKNFSDVLAK--NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHV 164 (192)
Q Consensus 87 ~~~~~~~l~~--~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v 164 (192)
....++++.. .+.++|-|.-.|-+.|..+...|...++...+-..++-+|+|+-++..+-|++...||+++|-+++.+
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 3455655533 57899999999999999999999999999998667999999999999999999999999999888777
Q ss_pred eEeeecCCcc------ccCCCHHHHHHHHHH
Q 046498 165 DTYYHDRKKR------VFLEQGDDIVNYIKT 189 (192)
Q Consensus 165 ~~~y~~~g~~------~~~~~~~~l~~~l~~ 189 (192)
...+ |.- ....+++++++.++-
T Consensus 91 kiD~---gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 91 KIDL---GTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred EEee---CCCCCceEEEEeccHHHHHHHHHH
Confidence 6554 321 111246677666653
No 157
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.46 E-value=3.3e-06 Score=58.19 Aligned_cols=101 Identities=11% Similarity=-0.033 Sum_probs=80.3
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHH---hcCCcEEEEEeCcccHHHHHHcCCCc--CcEEEE
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATE---LKGKAVLAKVDAINEIELAKRWGIQG--YPTIYF 157 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~---~~~~~~~~~vd~d~~~~l~~~~~v~~--~Pt~~~ 157 (192)
.+++.++++.....+.+..+.|+ .-..-....+.+.++|++ +++++.|+.+|.++.....+.+|++. +|.+.+
T Consensus 2 ~e~t~e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 2 REITFENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred cccccccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 67788889888888777766777 222346678899999999 99988899999999888999999997 899998
Q ss_pred EeCCEEEeEeee-cCCccccCCCHHHHHHHHHHhh
Q 046498 158 FVNGVHVDTYYH-DRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 158 ~~~g~~v~~~y~-~~g~~~~~~~~~~l~~~l~~~l 191 (192)
........ |. ..+.. +++.|.+|+++.+
T Consensus 80 ~~~~~~~K--y~~~~~~~----t~~~i~~Fv~~~~ 108 (111)
T cd03072 80 DSFRHMYL--FPDFEDVY----VPGKLKQFVLDLH 108 (111)
T ss_pred EcchhcCc--CCCCcccc----CHHHHHHHHHHHh
Confidence 87433223 53 45777 8999999999875
No 158
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.45 E-value=3.1e-06 Score=66.04 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=65.9
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc-----------cHHHHHHcCCCcCcEEEEEe--CCEE
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN-----------EIELAKRWGIQGYPTIYFFV--NGVH 163 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~-----------~~~l~~~~~v~~~Pt~~~~~--~g~~ 163 (192)
++.-|+.||.+.|+.|+++.|.+..++++|+= .+..|++|- +...++++||..+|+++++. .++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 45779999999999999999999999999964 355555442 23467899999999999996 3455
Q ss_pred EeEeeecCCccccCCCHHHHHHHHHH
Q 046498 164 VDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 164 v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
...-| |.. +.++|.+-+..
T Consensus 221 ~pv~~---G~i----S~deL~~Ri~~ 239 (248)
T PRK13703 221 RPLSY---GFI----TQDDLAKRFLN 239 (248)
T ss_pred EEEee---ccC----CHHHHHHHHHH
Confidence 55445 999 99999877654
No 159
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.45 E-value=3.1e-06 Score=64.26 Aligned_cols=91 Identities=10% Similarity=0.252 Sum_probs=63.3
Q ss_pred cCCcEEEEEEC-CCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc----------------------------cHHHHH
Q 046498 96 KNQHVMVAFYA-PWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN----------------------------EIELAK 145 (192)
Q Consensus 96 ~~~~vlv~f~a-~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~----------------------------~~~l~~ 145 (192)
.++.++|.||+ .||+.|..+.+.+.++++++.++.. ++.|++|. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46789999995 8899999999999999999986544 77776542 235678
Q ss_pred HcCCC------cCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 146 RWGIQ------GYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 146 ~~~v~------~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
.||+. .+|+.++++ +|++.... .+......+.+++.+.|..
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~---~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQIT---VNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEE---ecCCCCCCCHHHHHHHHHh
Confidence 88885 368999997 66655532 2322112256666666654
No 160
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.43 E-value=8.1e-06 Score=56.28 Aligned_cols=104 Identities=24% Similarity=0.406 Sum_probs=74.4
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHH-HHh--cCCcEEEEEeCc-----ccHHHHHHcCC--CcC
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAA-TEL--KGKAVLAKVDAI-----NEIELAKRWGI--QGY 152 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la-~~~--~~~~~~~~vd~d-----~~~~l~~~~~v--~~~ 152 (192)
.+++.-+|++++.+.+.++|.|=... |--+-+.++.+++ +.. .+...++.|-+. +|.+++++|++ ..+
T Consensus 7 v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f 84 (126)
T PF07912_consen 7 VPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF 84 (126)
T ss_dssp EEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred eeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence 78999999999999999999997554 4455677888888 433 233458888764 47899999999 568
Q ss_pred cEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 153 PTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 153 Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
|.+++|..|..-...|...|.. +.+.|++|++++.|
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~----t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDV----TADNLQRFVKSNTG 120 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S-----HHHHHHHHHHTSS
T ss_pred CEEEEecCCCCCCccCCccCCc----cHHHHHHHHHhCCC
Confidence 9999998553323225558889 99999999998743
No 161
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.43 E-value=2.8e-06 Score=66.07 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=60.7
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEE-----------------------------------------
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKV----------------------------------------- 135 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~v----------------------------------------- 135 (192)
++.+++.|.-+.||+|+++++.+.++.+. .+.+..+
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 56789999999999999999998886531 1211111
Q ss_pred ---eCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 136 ---DAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 136 ---d~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
+++++.++++++||+++|+++ +.+|+.+. |.. ++++|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~~------G~~----~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLVP------GYQ----GPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEee------CCC----CHHHHHHHHHHc
Confidence 123344788999999999998 77887654 999 999999999864
No 162
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.42 E-value=3.2e-06 Score=52.91 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=46.9
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHc----CCCcCcEEEEEeCCEEEeEeeecCCcccc
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRW----GIQGYPTIYFFVNGVHVDTYYHDRKKRVF 176 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~----~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~ 176 (192)
++.|+++||++|+.....+.+. ...+..+|++.++...+.+ ++.++|++++ +|+.+ .| .
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~~i------~g-~-- 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDEHL------SG-F-- 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCEEE------ec-C--
Confidence 5779999999999988877762 2347778887765544443 6889999865 45322 24 4
Q ss_pred CCCHHHHHHHH
Q 046498 177 LEQGDDIVNYI 187 (192)
Q Consensus 177 ~~~~~~l~~~l 187 (192)
+.++|+++|
T Consensus 65 --~~~~l~~~~ 73 (73)
T cd02976 65 --RPDKLRALL 73 (73)
T ss_pred --CHHHHHhhC
Confidence 577777653
No 163
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.1e-07 Score=69.53 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=69.3
Q ss_pred HHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCC
Q 046498 93 VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRK 172 (192)
Q Consensus 93 ~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g 172 (192)
+..+++..+++||++||.+|..+...++.+++.. ....|++++.++.++++..+.+...|...++..|+.+.+. .|
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l---~~ 88 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRL---SG 88 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhh---hc
Confidence 4446789999999999999999999999999988 4467999999999999999999999999999999888854 56
Q ss_pred cc
Q 046498 173 KR 174 (192)
Q Consensus 173 ~~ 174 (192)
..
T Consensus 89 ~~ 90 (227)
T KOG0911|consen 89 AD 90 (227)
T ss_pred cC
Confidence 65
No 164
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.33 E-value=5.9e-06 Score=54.21 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=54.4
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc----HHHHHHcCC--CcCcEEEEEeCCEEEeEeeecCCcc
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE----IELAKRWGI--QGYPTIYFFVNGVHVDTYYHDRKKR 174 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~----~~l~~~~~v--~~~Pt~~~~~~g~~v~~~y~~~g~~ 174 (192)
++.|..+||++|++....|+++..++.+ ..+..+|++.. .++.+..|- .++|++++ +|+.+ |.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i-------gG- 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV-------GG- 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe-------cC-
Confidence 5779999999999999999998765543 45777888753 356666664 79999843 56433 33
Q ss_pred ccCCCHHHHHHHHHHhhC
Q 046498 175 VFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 175 ~~~~~~~~l~~~l~~~l~ 192 (192)
.++|.++++++.+
T Consensus 71 -----~~dl~~~~~~~~~ 83 (86)
T TIGR02183 71 -----CTDFEQLVKENFD 83 (86)
T ss_pred -----HHHHHHHHHhccc
Confidence 3778888777643
No 165
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.30 E-value=4.5e-06 Score=63.25 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=56.0
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE---------------------------------------------
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV--------------------------------------------- 131 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~--------------------------------------------- 131 (192)
++..++.|+.+.|++|+++.+.+.+. .+.+.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 57889999999999999999988751 11111
Q ss_pred EEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 132 LAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 132 ~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
.+..+++++..+++++|++++|+++ +.+|+.+ .|.. +.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~------~G~~----~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRVV------PGAP----PAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeEe------cCCC----CHHHHHhhC
Confidence 1222333445788999999999997 8888764 4888 888888764
No 166
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.29 E-value=8.4e-06 Score=71.16 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=72.5
Q ss_pred ecChhhHHHHHhcCCcE-EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCE
Q 046498 84 NLSDKNFSDVLAKNQHV-MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGV 162 (192)
Q Consensus 84 ~~~~~~~~~~l~~~~~v-lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 162 (192)
.++++..+.+.+=++++ +-.|.+++|+.|......+++++.+.++ +..-.+|..+.++++++|+|.++|++++ ||+
T Consensus 462 ~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~-i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~ 538 (555)
T TIGR03143 462 PLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN-VEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ 538 (555)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC-ceEEEEECcccHHHHHhCCceecCEEEE--CCE
Confidence 34444444444335666 4456899999999999999999988774 6688999999999999999999999876 565
Q ss_pred EEeEeeecCCccccCCCHHHHHHHH
Q 046498 163 HVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 163 ~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
.+. .|.. +.+++.++|
T Consensus 539 ~~~-----~G~~----~~~~~~~~~ 554 (555)
T TIGR03143 539 QVY-----FGKK----TIEEMLELI 554 (555)
T ss_pred EEE-----eeCC----CHHHHHHhh
Confidence 443 5988 999998876
No 167
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.25 E-value=1.9e-05 Score=52.63 Aligned_cols=90 Identities=17% Similarity=0.263 Sum_probs=68.5
Q ss_pred hhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeE
Q 046498 87 DKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDT 166 (192)
Q Consensus 87 ~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~ 166 (192)
.+.++..+..++.++|-|+.++|+ .....+.++|+.+++...|+.+. +.++++++++.. |++.+|++...-..
T Consensus 7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~~ 79 (97)
T cd02981 7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEPV 79 (97)
T ss_pred HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCCc
Confidence 355667777888999999999987 46778899999998767787766 456777787764 88999975422222
Q ss_pred eeecCCccccCCCHHHHHHHHHH
Q 046498 167 YYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 167 ~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
.| .|.. +.++|.+||..
T Consensus 80 ~y--~g~~----~~~~l~~fi~~ 96 (97)
T cd02981 80 EY--DGEF----TEESLVEFIKD 96 (97)
T ss_pred cC--CCCC----CHHHHHHHHHh
Confidence 27 8988 89999999975
No 168
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.25 E-value=3.2e-05 Score=54.01 Aligned_cols=99 Identities=16% Similarity=0.257 Sum_probs=73.7
Q ss_pred hhhHHHHH--hcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcE-EEEEeCCEE
Q 046498 87 DKNFSDVL--AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPT-IYFFVNGVH 163 (192)
Q Consensus 87 ~~~~~~~l--~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt-~~~~~~g~~ 163 (192)
....++++ .+++.++|-|.-+|-+.|..+...|.+.+++..+-..++.+|+++-++..+.|.+. .|. +++|.+++.
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkh 86 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKH 86 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeE
Confidence 45566665 34689999999999999999999999999999987679999999999999999999 775 555558888
Q ss_pred EeEeeecCCcccc------CCCHHHHHHHHHH
Q 046498 164 VDTYYHDRKKRVF------LEQGDDIVNYIKT 189 (192)
Q Consensus 164 v~~~y~~~g~~~~------~~~~~~l~~~l~~ 189 (192)
+...+ |...+ ..+.++++..++.
T Consensus 87 m~vD~---GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 87 MMVDF---GTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp EEEES---SSSSSSSBCS--SCHHHHHHHHHH
T ss_pred EEEEe---cCCCccEEEEEcCcHHHHHHHHHH
Confidence 77655 42100 0146777766653
No 169
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.24 E-value=4.8e-05 Score=51.46 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=67.5
Q ss_pred ChhhHHHHHhc--CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH----HHHHHcCCC-cCcEEEEE
Q 046498 86 SDKNFSDVLAK--NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI----ELAKRWGIQ-GYPTIYFF 158 (192)
Q Consensus 86 ~~~~~~~~l~~--~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~----~l~~~~~v~-~~Pt~~~~ 158 (192)
+.++++++++. +++++|.=+++.|+-.......+++.....++...++.+|+-+.+ .++.+|||. .-|-++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 46788998876 789999999999999999999999999998877669999998764 678999997 57999999
Q ss_pred eCCEEEeEeeecCCccccCCCHHHH
Q 046498 159 VNGVHVDTYYHDRKKRVFLEQGDDI 183 (192)
Q Consensus 159 ~~g~~v~~~y~~~g~~~~~~~~~~l 183 (192)
++|+.+-..- -+.+ +.+.|
T Consensus 86 ~~g~~v~~aS--H~~I----t~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHAS--HWDI----TAEAL 104 (105)
T ss_dssp ETTEEEEEEE--GGG-----SHHHH
T ss_pred ECCEEEEECc--cccC----CHHhc
Confidence 9999887431 3345 56554
No 170
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.21 E-value=1.5e-05 Score=69.06 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=74.3
Q ss_pred EecChhhHHHHHhcCCcE-EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC
Q 046498 83 VNLSDKNFSDVLAKNQHV-MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~v-lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 161 (192)
..++++..+.+.+=++++ +-.|.+++|++|......+++++...+ .+.+-.+|..+.++++++|++.++|++++ +|
T Consensus 101 ~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~ 177 (517)
T PRK15317 101 PKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NG 177 (517)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CC
Confidence 345555445444334444 888999999999999999999998766 46688889999999999999999999965 56
Q ss_pred EEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 162 VHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 162 ~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
+.+ + .|.. +.+++.+.+.+
T Consensus 178 ~~~---~--~g~~----~~~~~~~~~~~ 196 (517)
T PRK15317 178 EEF---G--QGRM----TLEEILAKLDT 196 (517)
T ss_pred cEE---E--ecCC----CHHHHHHHHhc
Confidence 544 3 6888 88888887764
No 171
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.15 E-value=2.4e-05 Score=56.19 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=27.9
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcC
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKG 128 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~ 128 (192)
.+..++.|+..+|++|+.+.|.+.++.+++++
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 46789999999999999999999998877654
No 172
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.14 E-value=2.7e-05 Score=47.26 Aligned_cols=56 Identities=21% Similarity=0.391 Sum_probs=41.6
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHH----HHHHcCCCcCcEEEEEeCCEEE
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE----LAKRWGIQGYPTIYFFVNGVHV 164 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~g~~v 164 (192)
++.|+.+||++|+.....|++. .+.+-.+|+++.++ +.+..|..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 4679999999999999888543 24578888877643 334459999999976 66543
No 173
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.11 E-value=9e-05 Score=53.83 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=61.9
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHh--cCCcEEEEEeCcccH---------------------------------
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATEL--KGKAVLAKVDAINEI--------------------------------- 141 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~--~~~~~~~~vd~d~~~--------------------------------- 141 (192)
.+.+|+.|+..-|++|+.+.+.+.++.+++ ++++.+...++-...
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 467899999999999999999999999998 776666666541000
Q ss_pred -----------------------------------HHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHH
Q 046498 142 -----------------------------------ELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNY 186 (192)
Q Consensus 142 -----------------------------------~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~ 186 (192)
..++++||.++||+++ +|+.+. |.. +.+++.+.
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~~------~~~----~~~~l~~~ 159 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYVV------GPY----TIEELKEL 159 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEEE------TTT----SHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEeC------CCC----CHHHHHHH
Confidence 3345789999999988 887754 778 89999998
Q ss_pred HHH
Q 046498 187 IKT 189 (192)
Q Consensus 187 l~~ 189 (192)
|++
T Consensus 160 Id~ 162 (162)
T PF13462_consen 160 IDK 162 (162)
T ss_dssp HHH
T ss_pred HcC
Confidence 875
No 174
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.10 E-value=0.00013 Score=51.71 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=74.3
Q ss_pred EecChhhH-HHHHhcCCcEEEEEECC--CCh-hH-hhhhHHHHHHHHHhcCC-cEEEEEeCcccHHHHHHcCCC--cCcE
Q 046498 83 VNLSDKNF-SDVLAKNQHVMVAFYAP--WCF-WS-KKLAPEYKAAATELKGK-AVLAKVDAINEIELAKRWGIQ--GYPT 154 (192)
Q Consensus 83 ~~~~~~~~-~~~l~~~~~vlv~f~a~--wC~-~C-~~~~p~l~~la~~~~~~-~~~~~vd~d~~~~l~~~~~v~--~~Pt 154 (192)
+++++++. ++.=.+++..+|-|.-. .|. .+ ......+.++|++|+++ +.|+.+|.++...+.+.||+. ++|+
T Consensus 5 ~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~ 84 (130)
T cd02983 5 IELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPA 84 (130)
T ss_pred EEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCE
Confidence 67776554 44444455556656432 132 23 34577899999999999 679999999999999999995 5999
Q ss_pred EEEEeCCEEEeEeee-cCCccccCCCHHHHHHHHHHhh
Q 046498 155 IYFFVNGVHVDTYYH-DRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 155 ~~~~~~g~~v~~~y~-~~g~~~~~~~~~~l~~~l~~~l 191 (192)
++++...+. . |. ..|.. +.+.+.+|+.+.+
T Consensus 85 v~i~~~~~~-K--Y~~~~~~~----t~e~i~~Fv~~~l 115 (130)
T cd02983 85 MVAINFRKM-K--FATLKGSF----SEDGINEFLRELS 115 (130)
T ss_pred EEEEecccC-c--cccccCcc----CHHHHHHHHHHHH
Confidence 999975332 3 43 47888 9999999999875
No 175
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.09 E-value=2.3e-05 Score=50.48 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=43.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH-----HHHHHcCCCcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI-----ELAKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~-----~l~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
++.|+++|||+|+...+.++++... ..+..+|.+++. .+.+..|..++|++ |.+|+.+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ig 65 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFIG 65 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 5779999999999999999987652 457777776542 35566788999996 45665443
No 176
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.01 E-value=7.6e-05 Score=64.66 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=74.4
Q ss_pred EecChhhHHHHHhcCCc-EEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC
Q 046498 83 VNLSDKNFSDVLAKNQH-VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~-vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 161 (192)
..++++..+.+.+=+++ -+-.|.++.|++|......+++++...++ +..-.+|..+.++++++|++.++|++++ +|
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~-i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~ 178 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPN-ISHTMIDGALFQDEVEALGIQGVPAVFL--NG 178 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-ceEEEEEchhCHHHHHhcCCcccCEEEE--CC
Confidence 34555555544433444 48889999999999999999999988774 6677799999999999999999999975 56
Q ss_pred EEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 162 VHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 162 ~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
+.+. .|.. +.+++.+.+.+.
T Consensus 179 ~~~~-----~g~~----~~~~~~~~l~~~ 198 (515)
T TIGR03140 179 EEFH-----NGRM----DLAELLEKLEET 198 (515)
T ss_pred cEEE-----ecCC----CHHHHHHHHhhc
Confidence 5443 5888 888887776543
No 177
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.99 E-value=9.8e-05 Score=47.51 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=42.2
Q ss_pred cEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc---HHHHHHcCCCcCcEEEEEeCCEEE
Q 046498 99 HVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE---IELAKRWGIQGYPTIYFFVNGVHV 164 (192)
Q Consensus 99 ~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~---~~l~~~~~v~~~Pt~~~~~~g~~v 164 (192)
.-++.|+.+||+.|++....|++. .+.+-.+|++++ .++.+..|..++|.+++ +|+.+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 347789999999999999988753 133666777665 34555678899999953 66544
No 178
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.99 E-value=5.1e-05 Score=47.06 Aligned_cols=57 Identities=21% Similarity=0.392 Sum_probs=41.9
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHH----HHHcCCCcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIEL----AKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
++.|+++||++|+...+.|.+.. ..+..+|++++++. .+..+...+|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 56799999999999999988764 34778888776543 3445777889774 4776554
No 179
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.97 E-value=7e-05 Score=47.24 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=46.6
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHc---CCCcCcEEEEEeCCEEEeEeeecCCccccCC
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRW---GIQGYPTIYFFVNGVHVDTYYHDRKKRVFLE 178 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~---~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~ 178 (192)
..|+.++|+.|++....|++. .+.|-.+|++++++....+ |..++|++++ +|... . |..
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~~---~---~G~---- 63 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDLS---W---SGF---- 63 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCcE---E---ecc----
Confidence 468899999999999988752 2447888888877655544 8889999744 44322 2 345
Q ss_pred CHHHHHH
Q 046498 179 QGDDIVN 185 (192)
Q Consensus 179 ~~~~l~~ 185 (192)
+++.|.+
T Consensus 64 ~~~~~~~ 70 (72)
T TIGR02194 64 RPDKLKA 70 (72)
T ss_pred CHHHHHh
Confidence 5887765
No 180
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.95 E-value=9.8e-05 Score=58.14 Aligned_cols=82 Identities=16% Similarity=0.305 Sum_probs=57.2
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeC---------------------------------------
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDA--------------------------------------- 137 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~--------------------------------------- 137 (192)
.+.+++.|.-+.|++|+++++.+.++.+. +.+.+..+..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 45778899999999999999998876543 1122222210
Q ss_pred -----------cccHHHHHHcCCCcCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHH
Q 046498 138 -----------INEIELAKRWGIQGYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 138 -----------d~~~~l~~~~~v~~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
+++..+++++|++++|++++-+ +|.... . .|.. ++++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~--v--~G~~----~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQ--V--VGLP----DPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEE--e--cCCC----CHHHHHHHhC
Confidence 1122567889999999998886 454322 2 6999 9999998775
No 181
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.95 E-value=0.00024 Score=46.02 Aligned_cols=71 Identities=10% Similarity=0.067 Sum_probs=50.7
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHH---HHcCCCcCcEEEEEeCCEEEeEeeecCCccccC
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELA---KRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFL 177 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~---~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~ 177 (192)
+..|+.+||++|+.....|++. .+.|-.+|++++++.. +..|...+|++++ ++..+ .|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~~------~Gf---- 64 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLSW------SGF---- 64 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEEE------ecC----
Confidence 5679999999999998888552 2448888998876543 3457789999854 34222 244
Q ss_pred CCHHHHHHHHHHh
Q 046498 178 EQGDDIVNYIKTK 190 (192)
Q Consensus 178 ~~~~~l~~~l~~~ 190 (192)
+++.|.+++..+
T Consensus 65 -~~~~l~~~~~~~ 76 (81)
T PRK10329 65 -RPDMINRLHPAP 76 (81)
T ss_pred -CHHHHHHHHHhh
Confidence 599999887655
No 182
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.94 E-value=0.0001 Score=47.67 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=58.2
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC----EEEeEeeecCCcccc
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG----VHVDTYYHDRKKRVF 176 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g----~~v~~~y~~~g~~~~ 176 (192)
++.|..+.|+-|......+.++....+ ..+-.||+++++++.++|+. .+|.+.+-..+ .... .+..
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~-----~~~~-- 71 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEEL-----KWRF-- 71 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEE-----ESSB--
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEEcCccccccccee-----CCCC--
Confidence 678999999999999999998765543 56999999999999999996 69986544311 2322 3788
Q ss_pred CCCHHHHHHHHH
Q 046498 177 LEQGDDIVNYIK 188 (192)
Q Consensus 177 ~~~~~~l~~~l~ 188 (192)
+.+.|.++|+
T Consensus 72 --d~~~L~~~L~ 81 (81)
T PF05768_consen 72 --DEEQLRAWLE 81 (81)
T ss_dssp ---HHHHHHHHH
T ss_pred --CHHHHHHHhC
Confidence 9999999885
No 183
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.91 E-value=0.00019 Score=49.36 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=69.0
Q ss_pred EecChhhHHHHHhcCCcEEEEEE----CCCChhHhhhhHHHHHHHHHhc-CCcEEEEEeCcccHHHHHHcCCCc----Cc
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFY----APWCFWSKKLAPEYKAAATELK-GKAVLAKVDAINEIELAKRWGIQG----YP 153 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~----a~wC~~C~~~~p~l~~la~~~~-~~~~~~~vd~d~~~~l~~~~~v~~----~P 153 (192)
.+++.++....... +.++.|+ +..-..-......+.++|++++ +++.|+.+|.++.....+.+|+.. +|
T Consensus 2 ~~~~~en~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 2 GHRTKDNRAQFTKK--PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred CeeccchHHHhccC--CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 34566777766533 3344333 2233444667889999999999 688899999999888899999984 99
Q ss_pred EEEEEeCCEEEeEeeecCCccccCC-CHHHHHHHHHHh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLE-QGDDIVNYIKTK 190 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~-~~~~l~~~l~~~ 190 (192)
++.++.... .. |+..+ .. +.+.|.+|+++.
T Consensus 80 ~~~i~~~~~-~K--Y~~~~----~~~t~e~i~~F~~~f 110 (111)
T cd03073 80 VVAIRTAKG-KK--YVMEE----EFSDVDALEEFLEDF 110 (111)
T ss_pred EEEEEeCCC-Cc--cCCCc----ccCCHHHHHHHHHHh
Confidence 999987432 23 52122 22 679999999875
No 184
>PHA03050 glutaredoxin; Provisional
Probab=97.83 E-value=0.00016 Score=49.46 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=45.9
Q ss_pred HHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc---c----HHHHHHcCCCcCcEEEEEeCCE
Q 046498 90 FSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN---E----IELAKRWGIQGYPTIYFFVNGV 162 (192)
Q Consensus 90 ~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~---~----~~l~~~~~v~~~Pt~~~~~~g~ 162 (192)
.++.+++++ ++.|..+|||+|++....|++..-+.+ .|-.+|+++ . .++.+..|..++|++ |-+|+
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~ 78 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKT 78 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCE
Confidence 345555543 667999999999999998887643221 255566654 2 245566788899998 33566
Q ss_pred EEe
Q 046498 163 HVD 165 (192)
Q Consensus 163 ~v~ 165 (192)
.+.
T Consensus 79 ~iG 81 (108)
T PHA03050 79 SIG 81 (108)
T ss_pred EEe
Confidence 554
No 185
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.69 E-value=0.00052 Score=50.62 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=32.2
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEE
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLA 133 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~ 133 (192)
+++..++.|+...||+|+.+.+.+.++.+++++++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 45778999999999999999999999998887665443
No 186
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.66 E-value=0.00074 Score=42.41 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=39.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH---HHHHHcCCCcCcEEEEEeCCEEE
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI---ELAKRWGIQGYPTIYFFVNGVHV 164 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~---~l~~~~~v~~~Pt~~~~~~g~~v 164 (192)
++.|..+||+.|++....|++. .+.+-.+|++++. .+.+..|...+|.+ +-+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence 6779999999999998888753 2346677776654 23344588999997 4456543
No 187
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.65 E-value=0.00072 Score=42.61 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=40.3
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHH----HHcCCC-cCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELA----KRWGIQ-GYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~----~~~~v~-~~Pt~~~~~~g~~v~ 165 (192)
++.|+.+||+.|++....|++. .+.+-.+|++++++.. +..|.. ++|++ +-+|+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEEe
Confidence 5679999999999999888763 2346777887765443 345766 89977 45665554
No 188
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.63 E-value=0.00041 Score=44.36 Aligned_cols=57 Identities=19% Similarity=0.443 Sum_probs=39.8
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHH----HHHcCCCcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIEL----AKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
++.|+.+||+.|++....|++.. +.+-.+|++++++. .+..|..++|++ +-+|+.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ig 61 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG------VTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVG 61 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC------CCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 35689999999999999988632 34666677766544 344578899997 44665443
No 189
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.61 E-value=0.00062 Score=59.57 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=74.3
Q ss_pred HHHHHhc-CCc-EEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEe-CCEEEeE
Q 046498 90 FSDVLAK-NQH-VMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV-NGVHVDT 166 (192)
Q Consensus 90 ~~~~l~~-~~~-vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~-~g~~v~~ 166 (192)
+++.+.+ .++ .++.|+.+.|..|.++...+++++ .+.+++.+...|..++.+++++|++...|++.+++ +|+....
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i 435 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL 435 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence 3444433 344 577888889999999999999998 55666778888988899999999999999999995 6654443
Q ss_pred eeecCCccccCCCHHHHHHHHHHhh
Q 046498 167 YYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 167 ~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.| .|.. .-.++..+|..++
T Consensus 436 ~f--~g~P----~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 436 KF--HGVP----SGHELNSFILALY 454 (555)
T ss_pred EE--EecC----ccHhHHHHHHHHH
Confidence 35 7988 8888888887654
No 190
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.56 E-value=0.00046 Score=46.47 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=38.3
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH-------HHHHHcCCCcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI-------ELAKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~-------~l~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
++.|..+|||+|++....|.+.. +.+-.+|+|+.+ .+.+..|...+|.+ |-+|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEc
Confidence 66699999999999998777642 224456665442 23333467899997 45665554
No 191
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.47 E-value=0.0022 Score=49.59 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=48.5
Q ss_pred CCCceEecChhh---HHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCc
Q 046498 78 EKENAVNLSDKN---FSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI 138 (192)
Q Consensus 78 ~~~v~~~~~~~~---~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d 138 (192)
..+| ..++++. +-+..+.++|.+|+|.+-.||+-+.-.+.+++++++|.+...|+.|-+.
T Consensus 81 ns~v-v~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~ 143 (237)
T PF00837_consen 81 NSPV-VTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIE 143 (237)
T ss_pred CCce-EeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHh
Confidence 3466 7777776 4455677899999999999999999999999999999985556666543
No 192
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.46 E-value=0.0013 Score=41.37 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=41.6
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHH----HHHHcCCCcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE----LAKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
++.|+.+||+.|++....|++. .+.+-.+|++++++ +.+..+-..+|++ |-+|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 5679999999999999888863 23477778887654 5555677889988 44565444
No 193
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.43 E-value=0.002 Score=43.00 Aligned_cols=95 Identities=18% Similarity=0.329 Sum_probs=72.1
Q ss_pred hhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc--cHHHHHHcCCC----cCc-EEEEEe
Q 046498 87 DKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN--EIELAKRWGIQ----GYP-TIYFFV 159 (192)
Q Consensus 87 ~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~--~~~l~~~~~v~----~~P-t~~~~~ 159 (192)
-++|++++.....|+|+|..+--. -......+.++|+...+...++-|||.+ ...+|+++.+. --| ++..|+
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYK 87 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYK 87 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhh-HHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhccc
Confidence 478999998878888888766433 3344557889999999988999999987 56899999998 444 455667
Q ss_pred CCEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 160 NGVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 160 ~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
+|.-... | +-.. +...+..|++.
T Consensus 88 dG~fHkd-Y--dR~~----t~kSmv~FlrD 110 (112)
T cd03067 88 DGDFHTE-Y--NRQL----TFKSMVAFLRD 110 (112)
T ss_pred CCCcccc-c--cchh----hHHHHHHHhhC
Confidence 8866554 6 6666 78888888764
No 194
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.39 E-value=0.00034 Score=52.85 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=79.4
Q ss_pred CCCceEecC-hhhHHHHHhcC---CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCc
Q 046498 78 EKENAVNLS-DKNFSDVLAKN---QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYP 153 (192)
Q Consensus 78 ~~~v~~~~~-~~~~~~~l~~~---~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 153 (192)
.+.| .+++ ++.|-+.+.+. -.++|+.|.+--+.|..+...+.-||++|+- +.|+++-...- ....+|..+++|
T Consensus 137 ~~~V-~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~~-gas~~F~~n~lP 213 (273)
T KOG3171|consen 137 YGFV-YELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSNT-GASDRFSLNVLP 213 (273)
T ss_pred cceE-EEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeeccc-cchhhhcccCCc
Confidence 3456 6665 57888888654 3679999999999999999999999999985 67999986543 456889999999
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
++++|++|+.+.-..+.....-+.+...++.+||+.
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 999999998876311101111011146667777765
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.38 E-value=0.00076 Score=44.07 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=43.9
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEe--Cccc------------------------------HHHHHHcC
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVD--AINE------------------------------IELAKRWG 148 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd--~d~~------------------------------~~l~~~~~ 148 (192)
+..|+.+.|++|..+.+.+.++.+..+++..+.... .... ...+.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999986666666544443 2221 24567889
Q ss_pred CCcCcEEEEEe
Q 046498 149 IQGYPTIYFFV 159 (192)
Q Consensus 149 v~~~Pt~~~~~ 159 (192)
+.++||+++-.
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998764
No 196
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.35 E-value=0.0025 Score=48.69 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCcEEEEEECCCChhHhhhhHHH---HHHHHHhcCCcEEEEEe
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEY---KAAATELKGKAVLAKVD 136 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l---~~la~~~~~~~~~~~vd 136 (192)
+++-+|.|+.-.|++|..+.+.+ +.+.+.+++.+.+..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 45669999999999999999876 77888887665544433
No 197
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.35 E-value=0.0017 Score=48.07 Aligned_cols=64 Identities=30% Similarity=0.415 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC--EEEeEeeecCCc-cccCCCHHHHHHHHHHh
Q 046498 115 LAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG--VHVDTYYHDRKK-RVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 115 ~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g--~~v~~~y~~~g~-~~~~~~~~~l~~~l~~~ 190 (192)
....+.++|+.+.+...|+.++ ++++++++++.. |++++|+++ +.+. | .|. . +.++|.+||.++
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~--y--~~~~~----~~~~l~~fI~~~ 74 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVV--Y--DGDKF----TPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEE--E--SSSTT----SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCcee--c--ccccC----CHHHHHHHHHHh
Confidence 4567899999999888888887 667899999999 999999874 4455 7 787 7 899999999875
No 198
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00093 Score=58.57 Aligned_cols=82 Identities=18% Similarity=0.364 Sum_probs=66.1
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHH-H--HHHHHHhcCCcEEEEEeCcccHHHHHHcC--------CCc
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPE-Y--KAAATELKGKAVLAKVDAINEIELAKRWG--------IQG 151 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~-l--~~la~~~~~~~~~~~vd~d~~~~l~~~~~--------v~~ 151 (192)
..-+++.|++....++|++|-...+||..|+-|..+ + .++|+-++..++-++||-++-|++-+.|. --|
T Consensus 29 ~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GG 108 (667)
T COG1331 29 YPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGG 108 (667)
T ss_pred cccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCC
Confidence 345688999999999999999999999999999654 3 46777787778889999999887766553 568
Q ss_pred CcEEEEEe-CCEEE
Q 046498 152 YPTIYFFV-NGVHV 164 (192)
Q Consensus 152 ~Pt~~~~~-~g~~v 164 (192)
+|-.+|.. +|+..
T Consensus 109 WPLtVfLTPd~kPF 122 (667)
T COG1331 109 WPLTVFLTPDGKPF 122 (667)
T ss_pred CceeEEECCCCcee
Confidence 99888884 77654
No 199
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0092 Score=43.46 Aligned_cols=92 Identities=14% Similarity=0.266 Sum_probs=63.9
Q ss_pred hcCCcEEEEEEC-CCChhHhhhhHHHHHHHHHhcCCcE-EEEEeC---------------------cccHHHHHHcCCCc
Q 046498 95 AKNQHVMVAFYA-PWCFWSKKLAPEYKAAATELKGKAV-LAKVDA---------------------INEIELAKRWGIQG 151 (192)
Q Consensus 95 ~~~~~vlv~f~a-~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~---------------------d~~~~l~~~~~v~~ 151 (192)
..+++|+++||- .+++.|-.+.-.|++..+++..... ++.|.. |.+.++++.||+-.
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 357788888885 7799999999999999988887544 777765 34557888998743
Q ss_pred ------------CcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 152 ------------YPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 152 ------------~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
.++.++++ +|.+... ++..... -..+++.+.|+++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~-~~~v~~~---~h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYV-WRKVKVK---GHADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEE-ecCCCCc---ccHHHHHHHHHHh
Confidence 46788887 5655543 3211111 1367777777765
No 200
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.15 E-value=0.0037 Score=41.82 Aligned_cols=68 Identities=22% Similarity=0.354 Sum_probs=44.0
Q ss_pred hHHHHHhcCCcEEEEEE----CCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHH----HHHcCCCcCcEEEEEeC
Q 046498 89 NFSDVLAKNQHVMVAFY----APWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIEL----AKRWGIQGYPTIYFFVN 160 (192)
Q Consensus 89 ~~~~~l~~~~~vlv~f~----a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~ 160 (192)
..+++++++ .|+|+-. ++|||+|++....|.+.. +.|..+|+++++++ .+..|-..+|.++ -+
T Consensus 4 ~v~~~i~~~-~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~ 74 (97)
T TIGR00365 4 RIKEQIKEN-PVVLYMKGTPQFPQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VK 74 (97)
T ss_pred HHHHHhccC-CEEEEEccCCCCCCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--EC
Confidence 345556554 4444333 289999999998887742 33677888776543 3445677899873 45
Q ss_pred CEEEe
Q 046498 161 GVHVD 165 (192)
Q Consensus 161 g~~v~ 165 (192)
|+.+.
T Consensus 75 g~~iG 79 (97)
T TIGR00365 75 GEFVG 79 (97)
T ss_pred CEEEe
Confidence 65544
No 201
>PRK10638 glutaredoxin 3; Provisional
Probab=97.14 E-value=0.0042 Score=40.13 Aligned_cols=57 Identities=14% Similarity=0.317 Sum_probs=40.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHH----HHHHcCCCcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE----LAKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
++.|..+||++|++....|++.. +.+..+|++++++ +.+..|...+|++ +.+|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g------i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG------VSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 56788999999999998888632 3366678776653 3455578889987 33665554
No 202
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0027 Score=40.92 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=38.6
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH-----HHHHHc-CCCcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI-----ELAKRW-GIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~-----~l~~~~-~v~~~Pt~~~~~~g~~v~ 165 (192)
++.|..+|||+|++....|.+. .+.|..+|+++.+ +..++. |..++|.+++ +|+.+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ig 65 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVG 65 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEe
Confidence 5678999999999998888732 2336666665544 344555 7899998744 454443
No 203
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.04 E-value=0.0058 Score=40.23 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=36.1
Q ss_pred CCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHH----HHHcCCCcCcEEEEEeCCEEEe
Q 046498 107 PWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIEL----AKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 107 ~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
+||++|+.....|++.. +.|-.+|+++++++ .+..|-..+|.+ |-+|+.+.
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~iG 75 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELVG 75 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEEe
Confidence 69999999998887753 34777777666543 445678899997 34675443
No 204
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.03 E-value=0.0052 Score=46.12 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=76.1
Q ss_pred CCCCceEecChhhHH-HHHhc--CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCc
Q 046498 77 DEKENAVNLSDKNFS-DVLAK--NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYP 153 (192)
Q Consensus 77 ~~~~v~~~~~~~~~~-~~l~~--~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 153 (192)
..+.| ..+++..|. ++.+. +-.|+|..|...-+.|+-+...|+.++.+|+. ..|+++-.... ...|-=...|
T Consensus 89 kfG~V-~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c---IpNYPe~nlP 163 (240)
T KOG3170|consen 89 KFGEV-FPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC---IPNYPESNLP 163 (240)
T ss_pred cccce-eeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc---cCCCcccCCC
Confidence 34677 889988886 44444 45789999999999999999999999999997 57888865543 2345556799
Q ss_pred EEEEEeCCEEEeEeeecCCcccc---CCCHHHHHHHHHH
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVF---LEQGDDIVNYIKT 189 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~---~~~~~~l~~~l~~ 189 (192)
|+++|..|....+. .|.... -.+.+++..++-+
T Consensus 164 Tl~VY~~G~lk~q~---igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 164 TLLVYHHGALKKQM---IGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eEEEeecchHHhhe---ehhhhhcCCcCCHHHHHHHHHh
Confidence 99999988766532 342210 1157777766654
No 205
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.01 E-value=0.016 Score=39.11 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=64.2
Q ss_pred ChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeC-----
Q 046498 86 SDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVN----- 160 (192)
Q Consensus 86 ~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~----- 160 (192)
+.+++++.+..++.++|-|+..--. .....+.++|..+++...|+... +.++++.+++ -|++++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~ 78 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSN 78 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhc
Confidence 4566788887778888888776444 35678889999997777776544 3466788888 677888832
Q ss_pred -CEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 161 -GVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 161 -g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
-..-...| .|.. +.++|.+||..+
T Consensus 79 k~de~~~~y--~g~~----~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKF--DGDL----DSSKIKKFIREN 103 (104)
T ss_pred ccCcccccc--cCcC----CHHHHHHHHHhh
Confidence 11112227 8888 899999999864
No 206
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.85 E-value=0.0068 Score=45.10 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=25.0
Q ss_pred EEECCCChhHhhhhHHHHHHHHHhcCCcEEEE
Q 046498 103 AFYAPWCFWSKKLAPEYKAAATELKGKAVLAK 134 (192)
Q Consensus 103 ~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~ 134 (192)
+|.-|.|+.|-...|.+.++..++++++.+-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~ 33 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRF 33 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEE
Confidence 58999999999999999999999998765333
No 207
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.69 E-value=0.00055 Score=54.51 Aligned_cols=86 Identities=22% Similarity=0.439 Sum_probs=66.6
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccc
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRV 175 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~ 175 (192)
..++-+.||++||+..+...|.++-...-+.. +. ++.=+.-..+.+..+||+.+.|+..+...--... | .|..
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~--~--~~~r- 149 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPAS--Y--RGER- 149 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeeccccchh--h--cccc-
Confidence 56899999999999999999999888777763 33 4422333446788999999999998886554444 6 7888
Q ss_pred cCCCHHHHHHHHHHhh
Q 046498 176 FLEQGDDIVNYIKTKM 191 (192)
Q Consensus 176 ~~~~~~~l~~~l~~~l 191 (192)
+-+.|+++..+.+
T Consensus 150 ---~l~sLv~fy~~i~ 162 (319)
T KOG2640|consen 150 ---DLASLVNFYTEIT 162 (319)
T ss_pred ---cHHHHHHHHHhhc
Confidence 8899999887754
No 208
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.025 Score=38.36 Aligned_cols=69 Identities=16% Similarity=0.310 Sum_probs=44.4
Q ss_pred hHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH-HH----HHHcCCCcCcEEEEEeCCEE
Q 046498 89 NFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI-EL----AKRWGIQGYPTIYFFVNGVH 163 (192)
Q Consensus 89 ~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~-~l----~~~~~v~~~Pt~~~~~~g~~ 163 (192)
.+++.+.++ + +|.|..+||+.|+.+...|.+ +.....++.+|-+++. ++ .+--+...+|.+++ +|+.
T Consensus 6 ~v~~~i~~~-~-VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~ 77 (104)
T KOG1752|consen 6 KVRKMISEN-P-VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF 77 (104)
T ss_pred HHHHHhhcC-C-EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence 345555544 3 455999999999997777766 4444567788776553 33 23334668898654 5655
Q ss_pred Ee
Q 046498 164 VD 165 (192)
Q Consensus 164 v~ 165 (192)
+.
T Consensus 78 iG 79 (104)
T KOG1752|consen 78 IG 79 (104)
T ss_pred Ec
Confidence 54
No 209
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.28 E-value=0.019 Score=48.53 Aligned_cols=57 Identities=12% Similarity=0.268 Sum_probs=40.4
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHH---HHHH---------cCCCcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE---LAKR---------WGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~---l~~~---------~~v~~~Pt~~~~~~g~~v~ 165 (192)
++.|..+|||+|++....|.+. .+.|-.+|+++.++ +.++ .|..++|++++ +|+.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ig 72 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIG 72 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEe
Confidence 6679999999999998888773 23477888887663 2222 36789999855 555443
No 210
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.20 E-value=0.2 Score=33.56 Aligned_cols=96 Identities=10% Similarity=0.208 Sum_probs=64.8
Q ss_pred Eec-ChhhHHHHHh-cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeC
Q 046498 83 VNL-SDKNFSDVLA-KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVN 160 (192)
Q Consensus 83 ~~~-~~~~~~~~l~-~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 160 (192)
..+ +.++++++++ .+..++|-|+..--+ .....+.++|..+++...|+... +.++...+++. .|++.++++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~ 75 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEP 75 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCC
Confidence 344 4566889998 777778877776444 35567889999997777775443 34667777775 688888865
Q ss_pred CEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 161 GVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 161 g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
...-...|. .|.. +.+.|.+||...
T Consensus 76 ~~e~~~~y~-~g~~----~~~~l~~fi~~~ 100 (102)
T cd03066 76 FMEEPVTIP-DKPY----SEEELVDFVEEH 100 (102)
T ss_pred CCCCCcccC-CCCC----CHHHHHHHHHHh
Confidence 222111131 4567 899999999764
No 211
>PRK10824 glutaredoxin-4; Provisional
Probab=96.19 E-value=0.036 Score=38.27 Aligned_cols=67 Identities=19% Similarity=0.393 Sum_probs=41.7
Q ss_pred hHHHHHhcCCcEEEEEEC-----CCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHH----HHcCCCcCcEEEEEe
Q 046498 89 NFSDVLAKNQHVMVAFYA-----PWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELA----KRWGIQGYPTIYFFV 159 (192)
Q Consensus 89 ~~~~~l~~~~~vlv~f~a-----~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~----~~~~v~~~Pt~~~~~ 159 (192)
-.+++++++ +|+| |-. +|||+|++....|.++. +.+..+|+++++++. +.-|-..+|.+++
T Consensus 7 ~v~~~I~~~-~Vvv-f~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI-- 76 (115)
T PRK10824 7 KIQRQIAEN-PILL-YMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV-- 76 (115)
T ss_pred HHHHHHhcC-CEEE-EECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--
Confidence 345666654 4444 444 59999999998887753 234456666665433 3346677887643
Q ss_pred CCEEEe
Q 046498 160 NGVHVD 165 (192)
Q Consensus 160 ~g~~v~ 165 (192)
+|+.+.
T Consensus 77 ~G~~IG 82 (115)
T PRK10824 77 DGELVG 82 (115)
T ss_pred CCEEEc
Confidence 666655
No 212
>PTZ00062 glutaredoxin; Provisional
Probab=96.01 E-value=0.04 Score=42.02 Aligned_cols=66 Identities=17% Similarity=0.429 Sum_probs=41.3
Q ss_pred HHHHHhcCCcEEEEEEC-----CCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHH----HHcCCCcCcEEEEEeC
Q 046498 90 FSDVLAKNQHVMVAFYA-----PWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELA----KRWGIQGYPTIYFFVN 160 (192)
Q Consensus 90 ~~~~l~~~~~vlv~f~a-----~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~----~~~~v~~~Pt~~~~~~ 160 (192)
.+++++++ +|+| |.. |||+.|++....|++. .+.+..+|+++++++. +.-|-..+|.++ -+
T Consensus 106 v~~li~~~-~Vvv-f~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~ 175 (204)
T PTZ00062 106 IERLIRNH-KILL-FMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VN 175 (204)
T ss_pred HHHHHhcC-CEEE-EEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--EC
Confidence 44555554 4444 433 7999999998888754 2347778887766543 334566778765 35
Q ss_pred CEEEe
Q 046498 161 GVHVD 165 (192)
Q Consensus 161 g~~v~ 165 (192)
|+.+.
T Consensus 176 G~~IG 180 (204)
T PTZ00062 176 GELIG 180 (204)
T ss_pred CEEEc
Confidence 65554
No 213
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.96 E-value=0.026 Score=41.07 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=32.4
Q ss_pred hcCCcEEEEEECCCChhHhhh-hHHHHHHHHHhcCCc--EEEEEeCc
Q 046498 95 AKNQHVMVAFYAPWCFWSKKL-APEYKAAATELKGKA--VLAKVDAI 138 (192)
Q Consensus 95 ~~~~~vlv~f~a~wC~~C~~~-~p~l~~la~~~~~~~--~~~~vd~d 138 (192)
.++..+++.|.+.||+.|..+ .+.+.+..+++.... .++.|..|
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 344566777778999999999 999999998886443 25666543
No 214
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.44 E-value=0.65 Score=35.50 Aligned_cols=99 Identities=22% Similarity=0.251 Sum_probs=62.1
Q ss_pred ChhhHHHHHhcCCcEEEEEECCCCh-hHhhhhHHHHHHHHHhc----CCcE--EEEEeCcc-------------------
Q 046498 86 SDKNFSDVLAKNQHVMVAFYAPWCF-WSKKLAPEYKAAATELK----GKAV--LAKVDAIN------------------- 139 (192)
Q Consensus 86 ~~~~~~~~l~~~~~vlv~f~a~wC~-~C~~~~p~l~~la~~~~----~~~~--~~~vd~d~------------------- 139 (192)
+++.+...--++++++|.|.=+.|+ -|-.....+.++.++.. .++. ++.+|=+.
T Consensus 56 ~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~ 135 (207)
T COG1999 56 DGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWI 135 (207)
T ss_pred CCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCee
Confidence 3344443334789999999989986 58888888887777665 2233 55555321
Q ss_pred --------cHHHHHHcCCCc--C-------------cEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 140 --------EIELAKRWGIQG--Y-------------PTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 140 --------~~~l~~~~~v~~--~-------------Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.+++++.|++.. + ..++++. +|+.... | .+.. .++++.+.|++.+
T Consensus 136 ~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~-~--~~~~----~~~~i~~~l~~l~ 204 (207)
T COG1999 136 GLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT-Y--DYGE----PPEEIAADLKKLL 204 (207)
T ss_pred eeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE-e--cCCC----ChHHHHHHHHHHh
Confidence 125566666652 1 2344454 7777776 4 4555 6888888887764
No 215
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.14 E-value=0.56 Score=31.81 Aligned_cols=90 Identities=14% Similarity=0.191 Sum_probs=59.4
Q ss_pred ChhhHHHHHhcC-CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEE------
Q 046498 86 SDKNFSDVLAKN-QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFF------ 158 (192)
Q Consensus 86 ~~~~~~~~l~~~-~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~------ 158 (192)
+.++++..+.++ +.++|-|+..--+ .....+.++|+.+.+...|+... +.++.+++++.. |.+++|
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vvl~rp~~~~ 79 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLVVFQPEKFQ 79 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceEEECcHHHh
Confidence 456688887666 7777777766443 35667889999998777776544 346778888864 566666
Q ss_pred e--CCEEEeEeeecCCc-cccCCCHHH-HHHHHHHh
Q 046498 159 V--NGVHVDTYYHDRKK-RVFLEQGDD-IVNYIKTK 190 (192)
Q Consensus 159 ~--~g~~v~~~y~~~g~-~~~~~~~~~-l~~~l~~~ 190 (192)
+ +-+... | .|. . +.++ |.+||.++
T Consensus 80 ~k~e~~~~~--~--~~~~~----~~~~~~~~f~~~~ 107 (107)
T cd03068 80 SKYEPKSHV--L--NKKDS----TSEDELKDFFKEH 107 (107)
T ss_pred hhcCcceee--e--ecccc----chHHHHHHHHhcC
Confidence 2 222333 6 665 5 5544 99999764
No 216
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.36 Score=34.93 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=64.5
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCccc--------HHH---HH-HcCC
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAINE--------IEL---AK-RWGI 149 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~~--------~~l---~~-~~~v 149 (192)
..++++.+.-.--+++.+||-=.|+-|+.--. -..|+.|.++|.++.. ++..-|++- +++ |+ .|||
T Consensus 11 ~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgV 89 (162)
T COG0386 11 KDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGV 89 (162)
T ss_pred eccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCc
Confidence 44455444433357899999999999996442 3356778888887765 666666531 222 21 2333
Q ss_pred C-----------------------cCc------------EEEEE-eCCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 150 Q-----------------------GYP------------TIYFF-VNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 150 ~-----------------------~~P------------t~~~~-~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
. ..| |=+++ ++|+.|.+ | .-.. +++++...|+++++
T Consensus 90 tFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~R-f--~p~t----~P~d~~~~Ie~lL~ 161 (162)
T COG0386 90 TFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKR-F--SPKT----KPEDIELAIEKLLA 161 (162)
T ss_pred eeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEe-e--CCCC----ChhhHHHHHHHHhc
Confidence 2 111 33444 59999996 4 6666 79999988888764
No 217
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=94.75 E-value=0.58 Score=34.63 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=24.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcC
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKG 128 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~ 128 (192)
+..|+..-||+|-...+.+.++.+.+++
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~ 29 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPD 29 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 6778889999999999999999998844
No 218
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.32 E-value=0.22 Score=31.37 Aligned_cols=59 Identities=24% Similarity=0.215 Sum_probs=47.7
Q ss_pred EEEEEECCCChhHhhhhHHHHHHHHHh-cCCcEEEEEeCcccHHHHHHcCCCcCcEEEEE
Q 046498 100 VMVAFYAPWCFWSKKLAPEYKAAATEL-KGKAVLAKVDAINEIELAKRWGIQGYPTIYFF 158 (192)
Q Consensus 100 vlv~f~a~wC~~C~~~~p~l~~la~~~-~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 158 (192)
.+.+|-+...+..+.....+.++.+.+ ++...+-.||+.+++++++.++|-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 456666777688888888888887776 44455889999999999999999999997654
No 219
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=94.13 E-value=1.1 Score=29.77 Aligned_cols=74 Identities=15% Similarity=0.075 Sum_probs=49.4
Q ss_pred CcE-EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCcccc
Q 046498 98 QHV-MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVF 176 (192)
Q Consensus 98 ~~v-lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~ 176 (192)
++| ++.|..+. ..|.+....++++++-- +++.+-..+.++ ..|++.+..+|+.....| .|..
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF--~GiP-- 81 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRF--AGIP-- 81 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcccEEE--EecC--
Confidence 445 55565554 89999999998888654 444443322211 479999988775533335 8998
Q ss_pred CCCHHHHHHHHHHh
Q 046498 177 LEQGDDIVNYIKTK 190 (192)
Q Consensus 177 ~~~~~~l~~~l~~~ 190 (192)
.-.++..+|...
T Consensus 82 --~GhEf~Slilai 93 (94)
T cd02974 82 --MGHEFTSLVLAL 93 (94)
T ss_pred --CchhHHHHHHHh
Confidence 888998888654
No 220
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=93.92 E-value=0.44 Score=29.79 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=44.0
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEe--CCEEEeEeeecCCccccCC
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV--NGVHVDTYYHDRKKRVFLE 178 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~--~g~~v~~~y~~~g~~~~~~ 178 (192)
+..|+.+.|+.|++.+-.+.+..-.| .+..+|....+++ +.-+...+|++..-. +|..+ +
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y----~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l---~---------- 63 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPY----EVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL---V---------- 63 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCce----EEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE---E----------
Confidence 34688899999999987666543222 2333333222333 334566899886432 23211 2
Q ss_pred CHHHHHHHHHHhhC
Q 046498 179 QGDDIVNYIKTKMA 192 (192)
Q Consensus 179 ~~~~l~~~l~~~l~ 192 (192)
+...+.++|++.+|
T Consensus 64 eS~~I~~yL~~~~~ 77 (77)
T cd03040 64 DSSVIISTLKTYLG 77 (77)
T ss_pred cHHHHHHHHHHHcC
Confidence 56677888888876
No 221
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=93.65 E-value=0.36 Score=34.86 Aligned_cols=57 Identities=11% Similarity=0.158 Sum_probs=38.2
Q ss_pred EEEEECC------CChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHH----HHHHcCC----CcCcEEEEEeCCEEEe
Q 046498 101 MVAFYAP------WCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIE----LAKRWGI----QGYPTIYFFVNGVHVD 165 (192)
Q Consensus 101 lv~f~a~------wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~----l~~~~~v----~~~Pt~~~~~~g~~v~ 165 (192)
++.|+++ +|+.|+.....|+.+ .+.|-.+|++.+++ +.+.++- ..+|.+++ +|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 3456666 899999999888764 24578888877653 4444454 67887643 465444
No 222
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.82 Score=35.49 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=29.2
Q ss_pred HHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 142 ELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 142 ~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.++.++|+.++||+++- |+ . + .|.. +.+++.+.|....
T Consensus 206 ~~a~~~gv~gTPt~~v~--~~--~--~--~g~~----~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIVN--GK--L--V--PGLP----DLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEEC--Ce--e--e--cCCC----CHHHHHHHHHHhh
Confidence 56678999999998664 33 2 4 6888 8999999888754
No 223
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.12 E-value=0.98 Score=39.31 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=56.8
Q ss_pred HHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEee
Q 046498 90 FSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYY 168 (192)
Q Consensus 90 ~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y 168 (192)
++..+.+ .++|-+.++.+.|..|.++...++++++-- +++.+-.-+.+ ...|++.+..+|+.....|
T Consensus 10 l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f 77 (517)
T PRK15317 10 LKQYLELLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDTGVRF 77 (517)
T ss_pred HHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccceEEE
Confidence 3444433 456655555668999999999999998654 44444322211 3479999988776655446
Q ss_pred ecCCccccCCCHHHHHHHHHHhh
Q 046498 169 HDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 169 ~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.|.. .-.++..||..++
T Consensus 78 --~g~P----~g~Ef~s~i~~i~ 94 (517)
T PRK15317 78 --AGIP----MGHEFTSLVLALL 94 (517)
T ss_pred --EecC----ccHHHHHHHHHHH
Confidence 8998 8899998887654
No 224
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=92.66 E-value=0.46 Score=31.04 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=51.0
Q ss_pred CcEEEEEECCCChhHhhhhHHHHHHHHH-hcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC
Q 046498 98 QHVMVAFYAPWCFWSKKLAPEYKAAATE-LKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 98 ~~vlv~f~a~wC~~C~~~~p~l~~la~~-~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 161 (192)
.+++=.|.|..-+.++.....+.++.+. +.+...+-.||+.++|++++.++|-.+||++-...+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~ 67 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP 67 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC
Confidence 3566678888888888888888888665 455545888999999999999999999997666433
No 225
>PRK09301 circadian clock protein KaiB; Provisional
Probab=92.43 E-value=0.49 Score=31.86 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHH-hcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCC
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATE-LKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNG 161 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~-~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g 161 (192)
+.+++=.|.|..-+..+.....+.++.+. +.+...+-.||+.++|++++.++|-.+||++-...+
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~ 70 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP 70 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC
Confidence 35677788888888888888888888665 455545889999999999999999999997665433
No 226
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.12 E-value=0.33 Score=37.46 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=31.9
Q ss_pred HHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 142 ELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 142 ~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
..++++||+++|++++ +|+... .|.. +++.+...|++.++
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~~~V-----~Gaq----~~~v~~~al~~~~~ 214 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGKYAV-----SGAQ----PYDVLEDALRQLLA 214 (225)
T ss_pred HHHHHCCCccCceEEE--cCcEee-----cCCC----CHHHHHHHHHHHHh
Confidence 4578999999999988 443333 6999 99999999988764
No 227
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.96 E-value=1.7 Score=37.80 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=56.0
Q ss_pred HHHHHhc-CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEee
Q 046498 90 FSDVLAK-NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYY 168 (192)
Q Consensus 90 ~~~~l~~-~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y 168 (192)
+++.+.+ .++|-+.++.+.|..|.++...++++++.- +++.+..-+.+. ...|++.+..+|+.....|
T Consensus 10 l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f 78 (515)
T TIGR03140 10 LKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADTGIRF 78 (515)
T ss_pred HHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCcccceEE
Confidence 3444433 345655455447999999999999988654 444443333221 3569998888776555436
Q ss_pred ecCCccccCCCHHHHHHHHHHhh
Q 046498 169 HDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 169 ~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.|.. .-.++..+|...+
T Consensus 79 --~g~P----~g~Ef~s~i~~i~ 95 (515)
T TIGR03140 79 --AGIP----GGHEFTSLVLAIL 95 (515)
T ss_pred --EecC----CcHHHHHHHHHHH
Confidence 8988 8888888887654
No 228
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.59 Score=29.52 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=36.8
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc--------------H--HHHHHcCCCcCcEEEEEeCCEEEe
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE--------------I--ELAKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~--------------~--~l~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
+.|++.-||.|..+...++.+. +.+-.|++.+. + +-.+..|--|+|.+ +..+|+.|-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPal-l~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPAL-LTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEE-EeCCCcEEE
Confidence 6799999999998887777653 22334444322 1 22456677799998 456666554
No 229
>PHA03075 glutaredoxin-like protein; Provisional
Probab=91.19 E-value=0.46 Score=32.59 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=28.0
Q ss_pred CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeC
Q 046498 98 QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDA 137 (192)
Q Consensus 98 ~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~ 137 (192)
|.++|.|..|.|+-|+.....+.++..+| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence 45899999999999999999886666554 3555553
No 230
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=91.02 E-value=2.6 Score=30.00 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=50.3
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCc--CcEEEEEeCCEEEeEeeecCCccccCC
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQG--YPTIYFFVNGVHVDTYYHDRKKRVFLE 178 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~--~Pt~~~~~~g~~v~~~y~~~g~~~~~~ 178 (192)
++.++.|.|+=|.+....++.. -+.+-.+..++-..+.+++||.- --.--.+-+|..+. |-.
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~------Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vE------GHV---- 91 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKAN------GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVE------GHV---- 91 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhC------CcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEe------ccC----
Confidence 6779999999999887766621 24467777777778888888752 11222333666555 777
Q ss_pred CHHHHHHHHHH
Q 046498 179 QGDDIVNYIKT 189 (192)
Q Consensus 179 ~~~~l~~~l~~ 189 (192)
..+++..++++
T Consensus 92 Pa~aI~~ll~~ 102 (149)
T COG3019 92 PAEAIARLLAE 102 (149)
T ss_pred CHHHHHHHHhC
Confidence 78888888764
No 231
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=90.48 E-value=0.67 Score=32.71 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=31.0
Q ss_pred cHHHHHHcCCCcCcEEEEEeCCE-----------EEeEeeecCCccccCCCHHHHHHHHH
Q 046498 140 EIELAKRWGIQGYPTIYFFVNGV-----------HVDTYYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 140 ~~~l~~~~~v~~~Pt~~~~~~g~-----------~v~~~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
+|.+.++|+|+.+|++++.+++. ...+.| |.. +.+.-.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~---Gdv----sl~~ALe~ia 112 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVY---GNV----SLKGALEKMA 112 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEE---ecc----cHHHHHHHHH
Confidence 58999999999999999998764 234444 877 6555555554
No 232
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=90.38 E-value=1.3 Score=27.07 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=31.1
Q ss_pred EEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCE
Q 046498 103 AFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGV 162 (192)
Q Consensus 103 ~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~ 162 (192)
+++.++|+.|++..-.+....-.| ....++.++.....+..+-..+|++. ..+|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~----~~~~~~~~~~~~~~~~~~~~~vP~L~-~~~~~ 57 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPV----EQIILQNDDEATPIRMIGAKQVPILE-KDDGS 57 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCe----EEEECCCCchHHHHHhcCCCccCEEE-eCCCe
Confidence 577889999998877776542221 23344433333333344455788873 33353
No 233
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=90.18 E-value=3.1 Score=25.96 Aligned_cols=71 Identities=10% Similarity=0.024 Sum_probs=40.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc----HHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCcccc
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE----IELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVF 176 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~ 176 (192)
+..++.++|+.|++..-.+.+..- -+-.++++.. +++.+.-+...+|++.. .+|..+- +
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi------~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~~l--~-------- 64 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELEL------DVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGVQM--F-------- 64 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCC------cEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCeEE--E--------
Confidence 346777899999998877766532 2333444432 33433335568898743 3332222 2
Q ss_pred CCCHHHHHHHHHHh
Q 046498 177 LEQGDDIVNYIKTK 190 (192)
Q Consensus 177 ~~~~~~l~~~l~~~ 190 (192)
+...+.++|.+.
T Consensus 65 --es~~I~~yL~~~ 76 (77)
T cd03041 65 --ESADIVKYLFKT 76 (77)
T ss_pred --cHHHHHHHHHHh
Confidence 456677777654
No 234
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=89.19 E-value=1.4 Score=27.00 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=36.7
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc-cHHHHHHcCCCcCcEEEEEeCCEEE
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN-EIELAKRWGIQGYPTIYFFVNGVHV 164 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~-~~~l~~~~~v~~~Pt~~~~~~g~~v 164 (192)
+.|+.+||+.|++..-.+.+..-. ..+..+|... .+++.+......+|++. ..+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~----~e~~~v~~~~~~~~~~~~np~~~vP~L~-~~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT----VELREVELKNKPAEMLAASPKGTVPVLV-LGNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC----cEEEEeCCCCCCHHHHHHCCCCCCCEEE-ECCCcEE
Confidence 457889999999987766654322 2355666543 34555555677899984 3346443
No 235
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=88.14 E-value=4.5 Score=25.05 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=46.4
Q ss_pred EEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc-HHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHH
Q 046498 103 AFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE-IELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGD 181 (192)
Q Consensus 103 ~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~-~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~ 181 (192)
+++.++|+.|++..-.++...- ...+..++..+. +++.+...-..+|++. .+|..+. +..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-------------dS~ 61 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-------------DSA 61 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-------------SHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-------------CHH
Confidence 4788999999998776665421 123666665553 5566666777899996 5665332 456
Q ss_pred HHHHHHHHhh
Q 046498 182 DIVNYIKTKM 191 (192)
Q Consensus 182 ~l~~~l~~~l 191 (192)
.+.++|++..
T Consensus 62 ~I~~yL~~~~ 71 (75)
T PF13417_consen 62 AIIEYLEERY 71 (75)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHc
Confidence 6777777654
No 236
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.45 E-value=1.5 Score=33.12 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=34.7
Q ss_pred HHHHHHcCCCcCcEEEEEeCCEEEeEeeecCC--ccccCCCHHHHHHHHHHhh
Q 046498 141 IELAKRWGIQGYPTIYFFVNGVHVDTYYHDRK--KRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 141 ~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g--~~~~~~~~~~l~~~l~~~l 191 (192)
..+++++|+.++||+++-++|+.-..- .| .. +.+++..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~---~g~y~~----~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLG---TGAYFG----SPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEecc---CCcccC----CcHHHHHHHHHHH
Confidence 467889999999999999999776632 56 45 6788888887754
No 237
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=86.71 E-value=9.3 Score=27.18 Aligned_cols=87 Identities=9% Similarity=0.090 Sum_probs=57.8
Q ss_pred HhcCCcEEEEEECCCCh----hHhhh--hHHHHHHHHHhcCCcEEEEEeCcccH------------------HHHHHcCC
Q 046498 94 LAKNQHVMVAFYAPWCF----WSKKL--APEYKAAATELKGKAVLAKVDAINEI------------------ELAKRWGI 149 (192)
Q Consensus 94 l~~~~~vlv~f~a~wC~----~C~~~--~p~l~~la~~~~~~~~~~~vd~d~~~------------------~l~~~~~v 149 (192)
.++.|+.+|+.+.+.-. .|+.. .+.+. +-+.+..++-.-|+.... ..++.++.
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi---~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~ 94 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIV---QYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKT 94 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHH---HHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCc
Confidence 44578999999998864 45554 23333 334455666667765532 24556789
Q ss_pred CcCcEEEEEe--CC--EEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 150 QGYPTIYFFV--NG--VHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 150 ~~~Pt~~~~~--~g--~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
..+|.+.++- .+ ..+.++ .|.. +++++...|...
T Consensus 95 ~~fP~~avI~~~~~~~~vl~~i---~G~~----~~~ell~~L~~~ 132 (136)
T cd02990 95 DQLPAILIIMGKRSSNEVLNVI---QGNT----GVDELLMRLIEA 132 (136)
T ss_pred CCCCeEEEEEecCCceEEEEEE---ECCC----CHHHHHHHHHHH
Confidence 9999999983 22 445543 7999 999999888654
No 238
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=86.14 E-value=2.5 Score=28.99 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=19.7
Q ss_pred ccHHHHHHcCCCcCcEEEEEeC
Q 046498 139 NEIELAKRWGIQGYPTIYFFVN 160 (192)
Q Consensus 139 ~~~~l~~~~~v~~~Pt~~~~~~ 160 (192)
=+|.+.++|+|+.+|++++.++
T Consensus 59 IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 59 IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred EChhHHhhCCceEcCEEEEEcC
Confidence 3588999999999999999877
No 239
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=85.79 E-value=1.8 Score=29.47 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=36.5
Q ss_pred hcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc
Q 046498 95 AKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN 139 (192)
Q Consensus 95 ~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~ 139 (192)
-+|+.+||-=.|+-|+.-. --..|++|.++|.++.. ++..-|++
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 4688888888999999888 67799999999986655 88888764
No 240
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=85.63 E-value=1.2 Score=27.09 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=33.3
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCc----ccHHHHHHcCCCcCcEEEE
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI----NEIELAKRWGIQGYPTIYF 157 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d----~~~~l~~~~~v~~~Pt~~~ 157 (192)
..|+.++|+.|++..-.+.+..-. .....+|.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357888999999998887765322 224455542 2345555555668899854
No 241
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=85.35 E-value=2.2 Score=29.29 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=24.9
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI 141 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~ 141 (192)
..|+.++|+.|++....|++- .+.+-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 358999999999988877762 2347777776654
No 242
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=85.24 E-value=1.4 Score=32.96 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=28.0
Q ss_pred cHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 140 EIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 140 ~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
+...+.+.||.|+||+++ +|+... .|.. +.+.+.+.|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~~~~-----~G~~----~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGKYAV-----SGAQ----PPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCeEee-----cCCC----CHHHHHHHh
Confidence 346678899999999877 554332 6999 899888765
No 243
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=84.99 E-value=4.7 Score=24.50 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=31.9
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc-HHHHHHcCCCcCcEEE
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE-IELAKRWGIQGYPTIY 156 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~-~~l~~~~~v~~~Pt~~ 156 (192)
..|+.++|+.|++..-.+++..-.| ....+|.... +++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~----~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV----EIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc----EEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 4678899999999887776543222 2444554433 3444545566899763
No 244
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=84.92 E-value=8.2 Score=30.52 Aligned_cols=88 Identities=18% Similarity=0.330 Sum_probs=55.2
Q ss_pred cCCcEEEEEECCCChh-HhhhhHHHHHHHHHhcC----Cc--EEEEEeCccc--------------------------HH
Q 046498 96 KNQHVMVAFYAPWCFW-SKKLAPEYKAAATELKG----KA--VLAKVDAINE--------------------------IE 142 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~-C~~~~p~l~~la~~~~~----~~--~~~~vd~d~~--------------------------~~ 142 (192)
.|+.++++|.=+.||. |-++...+.++..+.+. .. .|+.+|-+.. ..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 4788999999999974 76665555544443332 21 4888875321 25
Q ss_pred HHHHcCCCc--Cc-----------EEEEE---eCCEEEeEeeecCCc-cccCCCHHHHHHHHHHhh
Q 046498 143 LAKRWGIQG--YP-----------TIYFF---VNGVHVDTYYHDRKK-RVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 143 l~~~~~v~~--~P-----------t~~~~---~~g~~v~~~y~~~g~-~~~~~~~~~l~~~l~~~l 191 (192)
+|++|.|.- -| ++++| .+|+.+. | -|. . +++++.+-|.+++
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd--~--~GrN~----~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVD--Y--YGRNY----DADELADSILKHV 275 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceeh--h--hcccC----CHHHHHHHHHHHH
Confidence 677777641 13 23333 4888887 4 464 4 7888888887764
No 245
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=83.95 E-value=1.1 Score=30.06 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=43.5
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc----HHHHHHcCCCcCcEEEEEe-CCEEEeEeeec-CCccc
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE----IELAKRWGIQGYPTIYFFV-NGVHVDTYYHD-RKKRV 175 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~-~g~~v~~~y~~-~g~~~ 175 (192)
..|+.++|+.|++....|++. .+.|-.+|+.++ .++.+-.+-.+.+.--++. +|.......-. .+..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~l- 74 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDEL- 74 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCC-
Confidence 468999999999988777663 133666666543 2343333333433333333 33222211000 1345
Q ss_pred cCCCHHHHHHHHHHh
Q 046498 176 FLEQGDDIVNYIKTK 190 (192)
Q Consensus 176 ~~~~~~~l~~~l~~~ 190 (192)
+.+++.++|.++
T Consensus 75 ---s~~e~~~~l~~~ 86 (105)
T cd02977 75 ---SDEEALELMAEH 86 (105)
T ss_pred ---CHHHHHHHHHhC
Confidence 788888888764
No 246
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=83.78 E-value=3.2 Score=30.62 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=31.5
Q ss_pred hcCCcEEEEEECCCCh-hHhhhhHHHHHHHHHhcC---CcEEEEEeCc
Q 046498 95 AKNQHVMVAFYAPWCF-WSKKLAPEYKAAATELKG---KAVLAKVDAI 138 (192)
Q Consensus 95 ~~~~~vlv~f~a~wC~-~C~~~~p~l~~la~~~~~---~~~~~~vd~d 138 (192)
-+|++++|.|.-+.|+ .|-.....+.++.+++.. ++.++.|.+|
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 3689999999999994 698888888777766543 3446666655
No 247
>PHA02291 hypothetical protein
Probab=83.75 E-value=1.2 Score=30.09 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=19.3
Q ss_pred CcchhhHHHHHHHHHHHHhhhhcc
Q 046498 1 MSTKAHLLALSTTIFLLFIVFRLS 24 (192)
Q Consensus 1 m~~k~~~~~~~~~~~l~~~~~~~~ 24 (192)
|+.|+|++.+++.+.|+++++..+
T Consensus 1 MS~K~~iFYiL~~~VL~~si~sY~ 24 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSISSYY 24 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHh
Confidence 899999998888888887776443
No 248
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=83.73 E-value=2.7 Score=29.58 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=23.2
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE 140 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~ 140 (192)
+..|+.++|+.|++....|++-. +.|-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~g------i~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHD------IPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC------CCcEEeeccCC
Confidence 45789999999999877665531 23556665443
No 249
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=83.48 E-value=0.44 Score=30.80 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=41.2
Q ss_pred EECCCChhHhhhhHHHHHHHHHh-cCCcEEEEEeCcccHHHHHHcCCCcCcEEE
Q 046498 104 FYAPWCFWSKKLAPEYKAAATEL-KGKAVLAKVDAINEIELAKRWGIQGYPTIY 156 (192)
Q Consensus 104 f~a~wC~~C~~~~p~l~~la~~~-~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 156 (192)
|-+..-+..+.....+..+.+.+ ++...+-.||+.+++++++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 44444556677777888887764 445559999999999999999999999874
No 250
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=82.73 E-value=12 Score=26.39 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=50.2
Q ss_pred cChhhHHHHHh-cCCcEEEEEECCCChhHhh--hhHHHHHHHH--HhcCCcE--EEEEeCcccHHHHHHcCC---CcCcE
Q 046498 85 LSDKNFSDVLA-KNQHVMVAFYAPWCFWSKK--LAPEYKAAAT--ELKGKAV--LAKVDAINEIELAKRWGI---QGYPT 154 (192)
Q Consensus 85 ~~~~~~~~~l~-~~~~vlv~f~a~wC~~C~~--~~p~l~~la~--~~~~~~~--~~~vd~d~~~~l~~~~~v---~~~Pt 154 (192)
.+.++.++.++ +....|| +-.+-|+ |-. .+|....... +-+++.+ |+..|-+.- +-++.|=. .+-|+
T Consensus 22 ~T~e~Vd~~~~~~~GTtlV-vVNSVCG-CAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt-~~aR~yf~~~pPSSPS 98 (136)
T PF06491_consen 22 TTAEEVDEALKNKEGTTLV-VVNSVCG-CAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEAT-AKAREYFEPYPPSSPS 98 (136)
T ss_dssp -SHHHHHHHHHH--SEEEE-EEE-SSH-HHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHH-HHHHHTSTTS---SSE
T ss_pred CCHHHHHHHHhCCCCcEEE-EEecccc-ccccccCHHHHHHHhCCCCCCceEEeccCCCHHHH-HHHHHhcCCCCCCCch
Confidence 35678888887 4444454 4456687 443 3554433322 2233322 444443332 22344432 35689
Q ss_pred EEEEeCCEEEeEeeec-CCccccCCCHHHHHHHHHHh
Q 046498 155 IYFFVNGVHVDTYYHD-RKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 155 ~~~~~~g~~v~~~y~~-~g~~~~~~~~~~l~~~l~~~ 190 (192)
+.+|++|+.+..+-|| ...+ +++.+.+-|...
T Consensus 99 ~ALfKdGelvh~ieRh~IEGr----~a~~Ia~~L~~a 131 (136)
T PF06491_consen 99 IALFKDGELVHFIERHHIEGR----PAEEIAENLQDA 131 (136)
T ss_dssp EEEEETTEEEEEE-GGGTTTS-----HHHHHHHHHHH
T ss_pred heeeeCCEEEEEeehhhcCCC----CHHHHHHHHHHH
Confidence 9999999988755332 2344 677777666543
No 251
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=82.62 E-value=1.3 Score=29.86 Aligned_cols=33 Identities=15% Similarity=-0.016 Sum_probs=23.1
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE 140 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~ 140 (192)
..|+.++|+.|++....|++- ...|-.+|+.+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 468999999999988777653 123556665544
No 252
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=82.31 E-value=19 Score=27.19 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=55.6
Q ss_pred CcEEEEEEC-CCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCc----------------------------ccHHHHHHc
Q 046498 98 QHVMVAFYA-PWCFWSKKLAPEYKAAATELKGKAV-LAKVDAI----------------------------NEIELAKRW 147 (192)
Q Consensus 98 ~~vlv~f~a-~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d----------------------------~~~~l~~~~ 147 (192)
+.+++.||- +.-+.|-.+...+.+..+++..+.. ++.+.+| .+.++++.|
T Consensus 34 kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~y 113 (194)
T COG0450 34 KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAY 113 (194)
T ss_pred cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHc
Confidence 555555553 3356788888888888888877665 6666654 234788888
Q ss_pred CCCcCc------EEEEEe-CCEEEeEeeecCC-ccccCCCHHHHHHHHHHh
Q 046498 148 GIQGYP------TIYFFV-NGVHVDTYYHDRK-KRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 148 ~v~~~P------t~~~~~-~g~~v~~~y~~~g-~~~~~~~~~~l~~~l~~~ 190 (192)
|+-.-. .+++++ +|.+....+...+ .+ +.+++...++.+
T Consensus 114 gvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGR----n~dEilR~idAl 160 (194)
T COG0450 114 GVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGR----NVDEILRVIDAL 160 (194)
T ss_pred CCcccCCCcceeEEEEECCCCeEEEEEEecCCCCc----CHHHHHHHHHHH
Confidence 876322 455665 6654333331222 45 788888777653
No 253
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=81.93 E-value=13 Score=31.58 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=55.1
Q ss_pred cCCcEEEEEECCCChhHhhhh-HHHHH--HHHHhcCCcEEEEEeCccc----HHHHHHcCCCcCcEEEEEe-CCEEEeEe
Q 046498 96 KNQHVMVAFYAPWCFWSKKLA-PEYKA--AATELKGKAVLAKVDAINE----IELAKRWGIQGYPTIYFFV-NGVHVDTY 167 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~-p~l~~--la~~~~~~~~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~-~g~~v~~~ 167 (192)
.++.++|-|-+.......++. -.|.. ..+..-.. |+.|-++.+ ..+..-|.+..+|+++++. .|..+.++
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~--fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKY--FVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcc--eEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence 345667767766666555554 12222 12222222 554544433 3455667889999999995 88888865
Q ss_pred eecCCccccCCCHHHHHHHHHHh
Q 046498 168 YHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 168 y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
+|.. ..|+|..-|++.
T Consensus 95 ---tg~v----~adeL~~~i~Kv 110 (506)
T KOG2507|consen 95 ---TGFV----TADELASSIEKV 110 (506)
T ss_pred ---eccc----cHHHHHHHHHHH
Confidence 7999 999999888764
No 254
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=81.28 E-value=2.7 Score=24.71 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=32.2
Q ss_pred EEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH--HHHHHcCCCcCcEEEE
Q 046498 103 AFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI--ELAKRWGIQGYPTIYF 157 (192)
Q Consensus 103 ~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~--~l~~~~~v~~~Pt~~~ 157 (192)
.|+.++|+.|++..-.++...-. .....++.++.. ++.+..+...+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP----YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC----cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57889999999888777765322 234445543322 2445566778997753
No 255
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=80.42 E-value=5 Score=31.60 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=38.7
Q ss_pred HHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEe
Q 046498 93 VLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFV 159 (192)
Q Consensus 93 ~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 159 (192)
+..+||+.++...+.|||.|-..+=.|-....+|++- .+.....+. .-.--.+|++.|..
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDP------YDNYPNTPTLIFNN 113 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCc------ccCCCCCCeEEEec
Confidence 4467899999999999999999876666666677653 322222221 00124578777664
No 256
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=79.08 E-value=2.1 Score=37.35 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=56.0
Q ss_pred cChhhHHHHHhcCCcEEEEEECCCChhHhhhhHH-H--HHHHHHhcCCcEEEEEeCcccHHHHH--------HcCCCcCc
Q 046498 85 LSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPE-Y--KAAATELKGKAVLAKVDAINEIELAK--------RWGIQGYP 153 (192)
Q Consensus 85 ~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~-l--~~la~~~~~~~~~~~vd~d~~~~l~~--------~~~v~~~P 153 (192)
...+.|+++-++++++++-..-+.|..|+.+..+ | ++.++.+.+..+-++||-++.|++-+ ..|--|+|
T Consensus 100 wgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 100 WGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred chHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 4567899999999999999999999999988653 3 34667776655566666666665543 45667899
Q ss_pred EEEEEe
Q 046498 154 TIYFFV 159 (192)
Q Consensus 154 t~~~~~ 159 (192)
..+++.
T Consensus 180 msV~LT 185 (786)
T KOG2244|consen 180 MSVFLT 185 (786)
T ss_pred eeEEeC
Confidence 888874
No 257
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=78.49 E-value=2.3 Score=28.98 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=42.6
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH----HHHHHcCCCcCcEEEEEe-CCEEEeEeeecCCcccc
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEI----ELAKRWGIQGYPTIYFFV-NGVHVDTYYHDRKKRVF 176 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~----~l~~~~~v~~~Pt~~~~~-~g~~v~~~y~~~g~~~~ 176 (192)
..|+.++|+.|++....|++- ...|-.+|+.+++ ++.+-.+..+.|..-+++ .|...... ...+. ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~-~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYREL-GLKDK-LP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhC-Ccccc-cc
Confidence 468899999999988777662 2346677765543 333333334455444554 33322211 00111 01
Q ss_pred CCCHHHHHHHHHHh
Q 046498 177 LEQGDDIVNYIKTK 190 (192)
Q Consensus 177 ~~~~~~l~~~l~~~ 190 (192)
..+.+++.+.+.++
T Consensus 74 ~~s~~e~~~~l~~~ 87 (111)
T cd03036 74 SLSEEEALELLSSD 87 (111)
T ss_pred cCCHHHHHHHHHhC
Confidence 11556777776653
No 258
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=77.55 E-value=3 Score=30.74 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=24.5
Q ss_pred HHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 141 IELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 141 ~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
.+.+.++||.++||+++ +|+. + .|.. ..+.+...|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~~----~--~G~~----~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGEM----F--WGQD----RLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCee----e--cccc----cHHHHHHHh
Confidence 35677899999999987 6642 2 4776 666666544
No 259
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=76.00 E-value=37 Score=26.77 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=40.9
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCC------ChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHH----cCCCc
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPW------CFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKR----WGIQG 151 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~w------C~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~----~~v~~ 151 (192)
..+++.+-+-+-+=+++|-|.+|.+- -..=+.....|++.++.-++++.+-.+|-+.+++.+++ +|+..
T Consensus 10 ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 10 YSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred ccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 55666555544444667877777665 22223333344444444444677999998777766555 88876
No 260
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=75.96 E-value=19 Score=26.63 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=15.7
Q ss_pred cccHHHHHHcCCCcCc-------EEEEEeCC
Q 046498 138 INEIELAKRWGIQGYP-------TIYFFVNG 161 (192)
Q Consensus 138 d~~~~l~~~~~v~~~P-------t~~~~~~g 161 (192)
|...++.+.+|..+.| ..++|.+|
T Consensus 154 Dpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg 184 (211)
T KOG0855|consen 154 DPKNEVIKDLGAPKDPFGGLPGRSHYIFDKG 184 (211)
T ss_pred CcchhHHHHhCCCCCCCCCcccceEEEEecC
Confidence 4445788888887755 45566555
No 261
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=75.47 E-value=3 Score=25.54 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=32.9
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc----cHHHHHHcCCCcCcEEE
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN----EIELAKRWGIQGYPTIY 156 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~----~~~l~~~~~v~~~Pt~~ 156 (192)
..|+.++|+.|++..-.+++..-. .....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~----~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE----LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC----CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 368889999999877776665322 2344555432 24555555566899994
No 262
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=74.07 E-value=5.4 Score=25.44 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=22.1
Q ss_pred cCcEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 151 GYPTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 151 ~~Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.-|++.+++ +|+.+.++- .... +.+++.++|.++.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~--i~~w----~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERIN--IEKW----KTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE---SSS----SHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEE--cccC----CHHHHHHHHHHhC
Confidence 458999997 788777653 4566 7999999998763
No 263
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=73.12 E-value=4 Score=27.13 Aligned_cols=11 Identities=45% Similarity=0.386 Sum_probs=6.9
Q ss_pred CcchhhHHHHH
Q 046498 1 MSTKAHLLALS 11 (192)
Q Consensus 1 m~~k~~~~~~~ 11 (192)
|..|+++++.+
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 77777665433
No 264
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.75 E-value=17 Score=30.51 Aligned_cols=80 Identities=13% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCcccc
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVF 176 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~ 176 (192)
+..-+=-|++-.|..|-..-..++-.+ -+..++....||-.-..+-.+.-+|.++||++ -||+... .|..
T Consensus 116 g~~~FETy~SltC~nCPDVVQALN~ms-vlNp~I~H~~IdGa~Fq~Evear~IMaVPtvf--lnGe~fg-----~GRm-- 185 (520)
T COG3634 116 GDFHFETYFSLTCHNCPDVVQALNLMS-VLNPRIKHTAIDGALFQDEVEARNIMAVPTVF--LNGEEFG-----QGRM-- 185 (520)
T ss_pred CceeEEEEEEeeccCChHHHHHHHHHH-hcCCCceeEEecchhhHhHHHhccceecceEE--Ecchhhc-----ccce--
Confidence 455677788899999999988888766 44455677888876555555666899999975 4787776 5777
Q ss_pred CCCHHHHHHHHH
Q 046498 177 LEQGDDIVNYIK 188 (192)
Q Consensus 177 ~~~~~~l~~~l~ 188 (192)
+.+++.+.+.
T Consensus 186 --tleeilaki~ 195 (520)
T COG3634 186 --TLEEILAKID 195 (520)
T ss_pred --eHHHHHHHhc
Confidence 7777776654
No 265
>PRK12559 transcriptional regulator Spx; Provisional
Probab=71.33 E-value=5.3 Score=28.11 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=17.2
Q ss_pred EEEEECCCChhHhhhhHHHHH
Q 046498 101 MVAFYAPWCFWSKKLAPEYKA 121 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~ 121 (192)
+..|+.++|+.|++....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 557899999999998766655
No 266
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=69.62 E-value=6.3 Score=26.90 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=23.2
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE 140 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~ 140 (192)
+..|+.++|+.|++....|++.. +.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~g------i~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQ------IPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC------CceEEEecCCC
Confidence 34688899999999888777631 23555565443
No 267
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=67.22 E-value=19 Score=23.11 Aligned_cols=52 Identities=6% Similarity=0.098 Sum_probs=33.2
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCccc-HHHHHHcCCCcCcEEE
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINE-IELAKRWGIQGYPTIY 156 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~-~~l~~~~~v~~~Pt~~ 156 (192)
+..|+.+.|+.|++..-.+.+..-. .....+|.... +++.+......+|++.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~----~~~~~v~~~~~~~~~~~~np~~~vPvL~ 71 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP----HEVININLKDKPDWFLEKNPQGKVPALE 71 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC----CeEEEeCCCCCcHHHHhhCCCCCcCEEE
Confidence 5557788899999887666654222 23555665443 3455555567899885
No 268
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=67.18 E-value=38 Score=23.19 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=68.8
Q ss_pred cChhhHHHHHhc--CCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE--EEEEeCcccHHHHH----HcCCC-cCcEE
Q 046498 85 LSDKNFSDVLAK--NQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV--LAKVDAINEIELAK----RWGIQ-GYPTI 155 (192)
Q Consensus 85 ~~~~~~~~~l~~--~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~--~~~vd~d~~~~l~~----~~~v~-~~Pt~ 155 (192)
++.+++-++-.+ +...++.|--.-.+...++.+.+.++|+++..... |+=||-|+-|-+.. .|+|. .-|.+
T Consensus 6 l~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqI 85 (120)
T cd03074 6 LKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQI 85 (120)
T ss_pred ccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCce
Confidence 344444333322 35778889999999999999999999999876543 99999999876543 45654 34887
Q ss_pred EEEe--CCEEEeEeeecC-CccccCCCHHHHHHHHHHhh
Q 046498 156 YFFV--NGVHVDTYYHDR-KKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 156 ~~~~--~g~~v~~~y~~~-g~~~~~~~~~~l~~~l~~~l 191 (192)
=+++ +...+--..... ... +.++|..||+..+
T Consensus 86 GVV~vtdadSvW~~m~~~~d~~----t~~~Le~WiedVL 120 (120)
T cd03074 86 GVVNVTDADSVWMEMDDDEDLP----TAEELEDWIEDVL 120 (120)
T ss_pred eeEecccccceeEecccccccC----cHHHHHHHHHhhC
Confidence 7774 333333111111 235 7999999998753
No 269
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=66.87 E-value=13 Score=27.38 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=38.8
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCc
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAI 138 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d 138 (192)
.+++++.+.--.-+|+.+||-=-|+-|+.-..--..|++|.++|++... ++..-|+
T Consensus 20 ~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 20 KDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred ecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 4445555544445688888888899998877666688888888876654 6666664
No 270
>COG3411 Ferredoxin [Energy production and conversion]
Probab=65.38 E-value=16 Score=22.38 Aligned_cols=29 Identities=14% Similarity=0.482 Sum_probs=23.3
Q ss_pred CcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 152 YPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 152 ~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
=|++++|.+| ..| +.. ++++..+.+.+|+
T Consensus 17 gPvl~vYpeg----vWY---~~V----~p~~a~rIv~~hl 45 (64)
T COG3411 17 GPVLVVYPEG----VWY---TRV----DPEDARRIVQSHL 45 (64)
T ss_pred CCEEEEecCC----eeE---ecc----CHHHHHHHHHHHH
Confidence 5999999998 337 677 8888888888875
No 271
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=65.26 E-value=7.7 Score=25.47 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=12.9
Q ss_pred CcchhhHHHHHHHHHHHHh
Q 046498 1 MSTKAHLLALSTTIFLLFI 19 (192)
Q Consensus 1 m~~k~~~~~~~~~~~l~~~ 19 (192)
|+||+.+.+++.++++.+.
T Consensus 1 m~~~~~~~ll~~v~~l~~~ 19 (91)
T TIGR01165 1 MSMKKTIWLLAAVAALVVL 19 (91)
T ss_pred CCcchhHHHHHHHHHHHHH
Confidence 8899877666666555544
No 272
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=64.94 E-value=12 Score=27.58 Aligned_cols=27 Identities=22% Similarity=0.472 Sum_probs=24.3
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhc
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELK 127 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~ 127 (192)
+..|+-+.||.|-...+.++++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567888999999999999999999984
No 273
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=64.52 E-value=15 Score=27.96 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=27.9
Q ss_pred cHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHH
Q 046498 140 EIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 140 ~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
+|.++++|+|..+|++++.-. ....++| |.. +.++-.+.+.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD~I~---GNI----sl~~ALe~iA 191 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYDIIR---GNL----RVGQALEKVA 191 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCCEEE---ecc----cHHHHHHHHH
Confidence 578999999999999999743 2334444 777 6444444443
No 274
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=63.12 E-value=46 Score=22.82 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=44.3
Q ss_pred ChhHhhhhHHHHHHHHHhcCCcE-EEEE-eCccc-----------HHHHHHcCCCcC-cEEEEE-eCCEEEeEeeecCCc
Q 046498 109 CFWSKKLAPEYKAAATELKGKAV-LAKV-DAINE-----------IELAKRWGIQGY-PTIYFF-VNGVHVDTYYHDRKK 173 (192)
Q Consensus 109 C~~C~~~~p~l~~la~~~~~~~~-~~~v-d~d~~-----------~~l~~~~~v~~~-Pt~~~~-~~g~~v~~~y~~~g~ 173 (192)
-+.-+.....|.+-...+..+-. ++.+ +-... ..+.++|++..- -+++++ ++|+...+ + .+.
T Consensus 22 d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r-~--~~p 98 (118)
T PF13778_consen 22 DPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLR-W--PEP 98 (118)
T ss_pred CHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEe-c--CCC
Confidence 44455556666665555655544 3333 22222 277888886533 344455 68877664 4 788
Q ss_pred cccCCCHHHHHHHHHH
Q 046498 174 RVFLEQGDDIVNYIKT 189 (192)
Q Consensus 174 ~~~~~~~~~l~~~l~~ 189 (192)
. ++++|-+.|..
T Consensus 99 ~----~~~~lf~~ID~ 110 (118)
T PF13778_consen 99 I----DPEELFDTIDA 110 (118)
T ss_pred C----CHHHHHHHHhC
Confidence 8 99999888764
No 275
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=62.77 E-value=14 Score=22.18 Aligned_cols=57 Identities=12% Similarity=0.002 Sum_probs=33.8
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc----cHHHHHHcCCCcCcEEEEEeCCEEE
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN----EIELAKRWGIQGYPTIYFFVNGVHV 164 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~----~~~l~~~~~v~~~Pt~~~~~~g~~v 164 (192)
..|+.+.|+.|++..-.+++..-. .....+|... .+++.+......+|++.. +|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP----YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC----cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 357788999999887776664322 2344555422 234444444567898853 45433
No 276
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=62.09 E-value=10 Score=26.72 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=16.4
Q ss_pred EEEEECCCChhHhhhhHHHHH
Q 046498 101 MVAFYAPWCFWSKKLAPEYKA 121 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~ 121 (192)
+..|+.++|+.|++....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456888999999997766654
No 277
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=60.89 E-value=22 Score=27.83 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=56.1
Q ss_pred cEEEEEECCCChhHhhhhHHHHHHHHHhcCCcE--EEEEeC----------------cccHHHHHHcCCCcCcEEEEEeC
Q 046498 99 HVMVAFYAPWCFWSKKLAPEYKAAATELKGKAV--LAKVDA----------------INEIELAKRWGIQGYPTIYFFVN 160 (192)
Q Consensus 99 ~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~--~~~vd~----------------d~~~~l~~~~~v~~~Pt~~~~~~ 160 (192)
-|+=+|++--|..|-.....|.+++.+-. +. -+.||. +......+.++-++++|=-.+-+
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a~~~~--vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLADDPG--VLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhccCCC--EEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 46667888899999999999999886633 32 455554 22345677889999999888888
Q ss_pred CEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 161 GVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 161 g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
|+... .|. +..++.+.|+.
T Consensus 121 Gr~~~-----~Ga-----d~~~i~~~i~a 139 (261)
T COG5429 121 GRVHA-----NGA-----DPGAIEDAIAA 139 (261)
T ss_pred chhhh-----cCC-----CHHHHHHHHHH
Confidence 87665 354 36666666653
No 278
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=60.46 E-value=16 Score=24.58 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=34.5
Q ss_pred EECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCC--cCcEEEE-EeCCE
Q 046498 104 FYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQ--GYPTIYF-FVNGV 162 (192)
Q Consensus 104 f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~--~~Pt~~~-~~~g~ 162 (192)
||-.+|+.|......+.... -.+.+.|+.+..+...++.+.+++. ..-+.++ ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD--RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC--CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 78889999999888877762 1122334444333444556677765 3444444 46776
No 279
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=59.56 E-value=77 Score=24.16 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=45.2
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcE--EEEEeCcc----------------cHHHHHHcCCCcCcEEEEEeCCE
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAV--LAKVDAIN----------------EIELAKRWGIQGYPTIYFFVNGV 162 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~--~~~vd~d~----------------~~~l~~~~~v~~~Pt~~~~~~g~ 162 (192)
+=+|++--|..|=.....|.+++++ ++ +. -..||.-+ ....++.++..++=|=-++-||.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~-Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~ 79 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PD-VIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGR 79 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TS-SEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CC-EEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCe
Confidence 3468899999999999999999988 33 44 44555311 23456677777654444556776
Q ss_pred EEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 163 HVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 163 ~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
.-. .|.. .+.+...|.+.
T Consensus 80 ~~~-----~g~~-----~~~~~~ai~~~ 97 (202)
T PF06764_consen 80 EHR-----VGSD-----RAAVEAAIQAA 97 (202)
T ss_dssp EEE-----ETT------HHHHHHHHHHH
T ss_pred eee-----eccC-----HHHHHHHHHHh
Confidence 554 2543 67777776654
No 280
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=58.73 E-value=8.4 Score=28.38 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=18.2
Q ss_pred HHHHHHcCCCcCcEEEEEeCCE
Q 046498 141 IELAKRWGIQGYPTIYFFVNGV 162 (192)
Q Consensus 141 ~~l~~~~~v~~~Pt~~~~~~g~ 162 (192)
...+.++||.++||+++..++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3567789999999999998665
No 281
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=54.82 E-value=62 Score=26.53 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=43.4
Q ss_pred EecChhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC---cEEEEEeCcccHHHHHHcC
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK---AVLAKVDAINEIELAKRWG 148 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~---~~~~~vd~d~~~~l~~~~~ 148 (192)
.++|=+|.+++..+|.|.+|+|+.+.-....+.- -+.+++++.+. +.++..|++.-......+|
T Consensus 213 REiTFeN~EELtEEGlPflILf~~kdD~~s~k~F--~~aI~ReL~~e~~~in~l~ADG~~f~hpL~Hlg 279 (375)
T KOG0912|consen 213 REITFENAEELTEEGLPFLILFRKKDDKESEKIF--KNAIARELDDETLAINFLTADGKVFKHPLRHLG 279 (375)
T ss_pred hhhhhccHHHHhhcCCceEEEEecCCcccHHHHH--HHHHHHHhhhhhhccceeecCcceecchHHHhC
Confidence 7888899999999999999999998865543321 23444554432 3478888876544444444
No 282
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=52.85 E-value=99 Score=25.34 Aligned_cols=89 Identities=16% Similarity=0.227 Sum_probs=47.2
Q ss_pred EecChhh--HHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHH-HHcCCCcCcEEEEEe
Q 046498 83 VNLSDKN--FSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELA-KRWGIQGYPTIYFFV 159 (192)
Q Consensus 83 ~~~~~~~--~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~-~~~~v~~~Pt~~~~~ 159 (192)
..++.++ +..+-+++++.+|.|...--| .+++..+.-..++.+.+.-.. .++++ ..-..+..|.+.+|+
T Consensus 137 ~pi~enQ~~fehlq~Rhq~ffVf~Gtge~P-------L~d~fidAASe~~~~a~FfSa-seeVaPe~~~~kempaV~VFK 208 (468)
T KOG4277|consen 137 EPINENQIEFEHLQARHQPFFVFFGTGEGP-------LFDAFIDAASEKFSVARFFSA-SEEVAPEENDAKEMPAVAVFK 208 (468)
T ss_pred eecChhHHHHHHHhhccCceEEEEeCCCCc-------HHHHHHHHhhhheeeeeeecc-ccccCCcccchhhccceEEEc
Confidence 4444433 344456688989988765433 333333322223333322221 12222 223456789999998
Q ss_pred CC-EEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 160 NG-VHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 160 ~g-~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
+. -.+. . .| +.++|.+|+.+
T Consensus 209 Detf~i~--d--e~------dd~dLseWinR 229 (468)
T KOG4277|consen 209 DETFEIE--D--EG------DDEDLSEWINR 229 (468)
T ss_pred cceeEEE--e--cC------chhHHHHHHhH
Confidence 76 4444 2 34 45888888875
No 283
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=52.80 E-value=66 Score=22.06 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=50.1
Q ss_pred ChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccH-HHHHHcC--CCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHH
Q 046498 109 CFWSKKLAPEYKAAATELKGKAVLAKVDAINEI-ELAKRWG--IQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVN 185 (192)
Q Consensus 109 C~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~-~l~~~~~--v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~ 185 (192)
|++|..+...|.-.. .+..+.-+.+|+..... ++....| -++.|++++=. |..........|...+..+++.|..
T Consensus 24 Cp~c~~iEGlLa~~P-~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~-~~~~~~~~~~~~~~rfi~d~~~I~~ 101 (112)
T PF11287_consen 24 CPHCAAIEGLLASFP-DLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD-GAPSPDDAGSHGGRRFIDDPRRILR 101 (112)
T ss_pred CCchHHHHhHHhhCh-hhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC-CCCCcccccccCCeEEeCCHHHHHH
Confidence 999999887765443 23333458889887753 4445444 46899886653 3211100012355556668899998
Q ss_pred HHHHhhC
Q 046498 186 YIKTKMA 192 (192)
Q Consensus 186 ~l~~~l~ 192 (192)
.|.+..|
T Consensus 102 ~La~r~g 108 (112)
T PF11287_consen 102 YLAERHG 108 (112)
T ss_pred HHHHHcC
Confidence 8887654
No 284
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=52.74 E-value=20 Score=24.52 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.7
Q ss_pred EEEEECCCChhHhhhhHHHHH
Q 046498 101 MVAFYAPWCFWSKKLAPEYKA 121 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~ 121 (192)
+..|+.+.|+.|++....|++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 356889999999998776655
No 285
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=51.74 E-value=25 Score=26.24 Aligned_cols=66 Identities=17% Similarity=0.369 Sum_probs=38.2
Q ss_pred cCCcEEEEEEC-CCChhHhhhhHHHHHHHHHhcCCcE-EEEEeC----------------------------cccHHHHH
Q 046498 96 KNQHVMVAFYA-PWCFWSKKLAPEYKAAATELKGKAV-LAKVDA----------------------------INEIELAK 145 (192)
Q Consensus 96 ~~~~vlv~f~a-~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~----------------------------d~~~~l~~ 145 (192)
.++++++.||. ++---|-.+.-.+-+.+++++.... ++.+.+ |.+.++++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 46888888884 4444454555556666666654332 444433 34558899
Q ss_pred HcCCC----cCc--EEEEEe-CC
Q 046498 146 RWGIQ----GYP--TIYFFV-NG 161 (192)
Q Consensus 146 ~~~v~----~~P--t~~~~~-~g 161 (192)
.||+- |++ -++++. +|
T Consensus 112 dyGvL~~~~G~~lRglfIId~~g 134 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDG 134 (196)
T ss_pred hcCceecCCCcceeeeEEEcccc
Confidence 99983 554 344444 44
No 286
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=50.03 E-value=72 Score=20.99 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=37.2
Q ss_pred ChhHhhhhH-----HH-H-HHHHHhcCCcE-EEEEeCcccH------HHHHHcCC--CcCcEEEEEeCCEEEeEeeecCC
Q 046498 109 CFWSKKLAP-----EY-K-AAATELKGKAV-LAKVDAINEI------ELAKRWGI--QGYPTIYFFVNGVHVDTYYHDRK 172 (192)
Q Consensus 109 C~~C~~~~p-----~l-~-~la~~~~~~~~-~~~vd~d~~~------~l~~~~~v--~~~Pt~~~~~~g~~v~~~y~~~g 172 (192)
|..|..+-. +| + .+.++|++... +-.||+.+.+ +++++..= --+|-+ .-+|+.++ +|
T Consensus 9 CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV--~i~~eiV~-----EG 81 (93)
T PF07315_consen 9 CASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLV--VINDEIVA-----EG 81 (93)
T ss_dssp -GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEE--EETTEEEE-----ES
T ss_pred chhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceE--EECCEEEe-----cC
Confidence 877776522 22 2 45689998755 9999997643 34443222 246754 34788988 58
Q ss_pred ccccCCCHHHHHHHH
Q 046498 173 KRVFLEQGDDIVNYI 187 (192)
Q Consensus 173 ~~~~~~~~~~l~~~l 187 (192)
.. ...++-+++
T Consensus 82 np----~LK~I~~~~ 92 (93)
T PF07315_consen 82 NP----QLKDIYEEM 92 (93)
T ss_dssp S------HHHHHHHH
T ss_pred Cc----cHHHHHHhh
Confidence 77 666666654
No 287
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=49.80 E-value=58 Score=19.89 Aligned_cols=56 Identities=13% Similarity=-0.046 Sum_probs=33.8
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc----cHHHHHHcCCCcCcEEEEEeCCEE
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN----EIELAKRWGIQGYPTIYFFVNGVH 163 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~----~~~l~~~~~v~~~Pt~~~~~~g~~ 163 (192)
..|+.+.|+.|++..-.+.+..- ...+..+|... .+++.+--....+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL----RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC----CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 46788889999887755554432 23355666532 23455555566899985 46643
No 288
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=48.96 E-value=74 Score=20.82 Aligned_cols=38 Identities=16% Similarity=0.022 Sum_probs=19.5
Q ss_pred CChhHhhhhHHHHHHHHHhcCCc-EEEEEeCcccHHHHH
Q 046498 108 WCFWSKKLAPEYKAAATELKGKA-VLAKVDAINEIELAK 145 (192)
Q Consensus 108 wC~~C~~~~p~l~~la~~~~~~~-~~~~vd~d~~~~l~~ 145 (192)
.+.--++....=+.+..-+..+. .|-.+|++.+++..+
T Consensus 8 s~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~ 46 (92)
T cd03030 8 SSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQ 46 (92)
T ss_pred cccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHH
Confidence 33334444333333333344333 499999987765433
No 289
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=48.35 E-value=27 Score=27.29 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=33.9
Q ss_pred cCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCC----cEEEEEeCc
Q 046498 96 KNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGK----AVLAKVDAI 138 (192)
Q Consensus 96 ~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~----~~~~~vd~d 138 (192)
.|..++|-+-..+|..|..-...|+.|..++... +.|..||--
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3678899999999999999999999888776543 347777743
No 290
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=48.10 E-value=31 Score=22.13 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=24.3
Q ss_pred CcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 152 YPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 152 ~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
-.|+.+|..|+.+- .|.. +.+++.+.+++.
T Consensus 49 ~~t~~IF~sGki~i-----tGak----s~~~~~~a~~~i 78 (86)
T PF00352_consen 49 KATVLIFSSGKIVI-----TGAK----SEEEAKKAIEKI 78 (86)
T ss_dssp TEEEEEETTSEEEE-----EEES----SHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEE-----EecC----CHHHHHHHHHHH
Confidence 46888889999887 5998 888888877765
No 291
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=45.03 E-value=1e+02 Score=21.44 Aligned_cols=48 Identities=13% Similarity=0.285 Sum_probs=30.3
Q ss_pred EEEEEeCcccH----------HHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHH
Q 046498 131 VLAKVDAINEI----------ELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 131 ~~~~vd~d~~~----------~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
.+.+-+..+++ ++.++-|....|-++ -+|+++. . -.+. +.++|.+|+.
T Consensus 42 ~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitl--VdGeiv~--~--G~YP----t~eEl~~~~~ 99 (123)
T PF06953_consen 42 EVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITL--VDGEIVK--T--GRYP----TNEELAEWLG 99 (123)
T ss_dssp EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEE--ETTEEEE--E--SS-------HHHHHHHHT
T ss_pred eEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEE--ECCEEEE--e--cCCC----CHHHHHHHhC
Confidence 48888888765 334556889999764 4788887 3 3456 7899988874
No 292
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=43.10 E-value=55 Score=21.57 Aligned_cols=33 Identities=6% Similarity=0.134 Sum_probs=24.3
Q ss_pred CcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 150 QGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 150 ~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+.-|++++|..+.-+- | |.. +++++...+.+++
T Consensus 51 ~~gp~vvvyP~~~g~w--y---~~v----~p~~v~~Iv~~hl 83 (97)
T cd03062 51 KFAGNVIIYPKGDGIW--Y---GRV----TPEHVPPIVDRLI 83 (97)
T ss_pred CcCCEEEEEeCCCeeE--E---eec----CHHHHHHHHHHHh
Confidence 3469999998333333 6 778 8999999888775
No 293
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=42.76 E-value=75 Score=19.12 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=33.3
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCc----ccHHHHHHcCCCcCcEEEEEeCCE
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAI----NEIELAKRWGIQGYPTIYFFVNGV 162 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d----~~~~l~~~~~v~~~Pt~~~~~~g~ 162 (192)
+-.|+.+.|+.|++..-.+++..-. .....++.. ..++..+......+|++. .+|.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~ 61 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD----YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDL 61 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC----cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCE
Confidence 4456667799999887777664322 234445542 224455555667899874 3554
No 294
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=42.59 E-value=1.5e+02 Score=23.00 Aligned_cols=72 Identities=21% Similarity=0.202 Sum_probs=48.8
Q ss_pred EEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHH
Q 046498 103 AFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDD 182 (192)
Q Consensus 103 ~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~ 182 (192)
.|.-..|..|-.+...+++- -+- ..+-.+|....+.++-+-+|-++|.+ |.+|+.+. .+.. ++++
T Consensus 15 I~~HktC~ssy~Lf~~L~nk--gll--~~Vkii~a~~p~f~~~~~~V~SvP~V--f~DGel~~-----~dpV----dp~~ 79 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLENK--GLL--GKVKIIDAELPPFLAFEKGVISVPSV--FIDGELVY-----ADPV----DPEE 79 (265)
T ss_pred EEEecchHHHHHHHHHHHhc--CCC--CCceEEEcCCChHHHhhcceeecceE--EEcCeEEE-----cCCC----CHHH
Confidence 35556788887765554431 011 12556677777777778789999986 55787775 5888 9999
Q ss_pred HHHHHHH
Q 046498 183 IVNYIKT 189 (192)
Q Consensus 183 l~~~l~~ 189 (192)
+...++.
T Consensus 80 ies~~~G 86 (265)
T COG5494 80 IESILSG 86 (265)
T ss_pred HHHHHcC
Confidence 9887753
No 295
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=41.55 E-value=65 Score=22.18 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=24.2
Q ss_pred HHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHH
Q 046498 144 AKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 144 ~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~ 189 (192)
+..+||..+|.++|- ++-|. | |.. +...-.+.+.+
T Consensus 76 Aw~lgi~k~PAVVfD--~~~VV--Y---G~t----DV~~A~~~~~~ 110 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD--DRYVV--Y---GET----DVARALARIEQ 110 (114)
T ss_pred HHHhCccccCEEEEc--CCeEE--e---ccc----HHHHHHHHHHH
Confidence 568999999998664 55565 7 877 65554444443
No 296
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=39.27 E-value=31 Score=22.36 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=22.1
Q ss_pred EECCC---ChhH--hhhh---HHHHHHHHHhcCCcE-EEEEeCc
Q 046498 104 FYAPW---CFWS--KKLA---PEYKAAATELKGKAV-LAKVDAI 138 (192)
Q Consensus 104 f~a~w---C~~C--~~~~---p~l~~la~~~~~~~~-~~~vd~d 138 (192)
||..| |..| .... .++++-.++|++..+ ++.+|-.
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 45555 6777 5444 445555678888766 7777744
No 297
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=36.87 E-value=50 Score=22.73 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=17.9
Q ss_pred EEEEEECCCChhHhhhhHHHHH
Q 046498 100 VMVAFYAPWCFWSKKLAPEYKA 121 (192)
Q Consensus 100 vlv~f~a~wC~~C~~~~p~l~~ 121 (192)
.+..|+.+.|..|++....|++
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHH
Confidence 3567899999999998777765
No 298
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=36.41 E-value=69 Score=26.51 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=46.3
Q ss_pred CChhHhhhhHHH----HHHHHHhcCC---cEEEEEeCccc---HHHHHHcCCCc--CcEEEEEeCCEEEeEeeecCCccc
Q 046498 108 WCFWSKKLAPEY----KAAATELKGK---AVLAKVDAINE---IELAKRWGIQG--YPTIYFFVNGVHVDTYYHDRKKRV 175 (192)
Q Consensus 108 wC~~C~~~~p~l----~~la~~~~~~---~~~~~vd~d~~---~~l~~~~~v~~--~Pt~~~~~~g~~v~~~y~~~g~~~ 175 (192)
.||.|-+..-.+ +++.+.+... ..++.+-|--| +.--..+|+.+ -|...+|++|+.+.+. .+..
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~---~~~~- 338 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKL---PEED- 338 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEec---Chhh-
Confidence 488887664433 3333333322 23555555433 12234567654 6899999999998853 5666
Q ss_pred cCCCHHHHHHHHHHh
Q 046498 176 FLEQGDDIVNYIKTK 190 (192)
Q Consensus 176 ~~~~~~~l~~~l~~~ 190 (192)
-.++|.+.+.++
T Consensus 339 ---~~eel~~~i~~~ 350 (361)
T COG0821 339 ---IVEELEALIEAY 350 (361)
T ss_pred ---HHHHHHHHHHHH
Confidence 578888877765
No 299
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=35.68 E-value=1.1e+02 Score=18.90 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=17.2
Q ss_pred EEeCCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 157 FFVNGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 157 ~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
+.-+|+.+-...+..|.. +.+++.+.|
T Consensus 45 v~~~g~~v~sk~~~~~fp----~~~~~~~~i 71 (72)
T TIGR02174 45 VTVNGQLVWSKLRGGGFP----EPEELKQLI 71 (72)
T ss_pred EEECCEEEEEeccCCCCC----CHHHHHHhh
Confidence 334887776554344667 788887765
No 300
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=33.95 E-value=1.9e+02 Score=21.21 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=23.8
Q ss_pred HHHHcCCCcC-cEEEEEe-CCEEEeEeeecCCccccCCCHHHHHHHHH
Q 046498 143 LAKRWGIQGY-PTIYFFV-NGVHVDTYYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 143 l~~~~~v~~~-Pt~~~~~-~g~~v~~~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
+.+.|++..- -.+++++ +|+..- ...|.+ +++++.+.+.
T Consensus 115 ~~~aW~L~~~~SaiiVlDK~G~V~F---~k~G~L----s~~Ev~qVi~ 155 (160)
T PF09695_consen 115 VRKAWQLQEESSAIIVLDKQGKVQF---VKEGAL----SPAEVQQVIA 155 (160)
T ss_pred eeccccCCCCCceEEEEcCCccEEE---EECCCC----CHHHHHHHHH
Confidence 3344555433 3455665 555544 338999 9999888764
No 301
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=32.99 E-value=48 Score=22.38 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=16.1
Q ss_pred EEEECCCChhHhhhhHHHHH
Q 046498 102 VAFYAPWCFWSKKLAPEYKA 121 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~ 121 (192)
..|+.+.|..|++....|++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE 21 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46889999999998766655
No 302
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.97 E-value=85 Score=24.41 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=26.2
Q ss_pred CcEEEEEECC-CChhHhhhhHHHHHHHHHhcCCc
Q 046498 98 QHVMVAFYAP-WCFWSKKLAPEYKAAATELKGKA 130 (192)
Q Consensus 98 ~~vlv~f~a~-wC~~C~~~~p~l~~la~~~~~~~ 130 (192)
..+-|++|++ -||.|-.-.+.|+++...+++.+
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 3455666665 49999999999999999988654
No 303
>PRK10387 glutaredoxin 2; Provisional
Probab=32.36 E-value=2.1e+02 Score=21.11 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=29.7
Q ss_pred EEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEE
Q 046498 103 AFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVH 163 (192)
Q Consensus 103 ~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 163 (192)
.++.+.|++|.+..-.+++..-.| ....++..+.....+..+...+|++.. .+|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~y----~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIPV----ELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCCe----EEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 456778999998877666543222 233344333222222223457888743 34533
No 304
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=31.94 E-value=78 Score=23.61 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=23.7
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+.++|+.|+.+- +|.. +.+++...+++..
T Consensus 55 a~LIF~SGK~Vc-----TGaK----s~ed~~~av~~~~ 83 (185)
T COG2101 55 AALIFRSGKVVC-----TGAK----SVEDVHRAVKKLA 83 (185)
T ss_pred eEEEEecCcEEE-----eccC----cHHHHHHHHHHHH
Confidence 677889998886 6999 9999888877653
No 305
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=31.54 E-value=52 Score=22.31 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=21.9
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcc
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAIN 139 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~ 139 (192)
..|+.+.|..|++....+++- ...+-.+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccC
Confidence 468899999999988777663 12355556544
No 306
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=30.77 E-value=75 Score=26.49 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=42.4
Q ss_pred CChhHhhhhHHHHHHHHHh-------cCCcEEEEEeCcccH--HH-HHHcCCC-cC-cEEEEEeCCEEEeEeeecCCccc
Q 046498 108 WCFWSKKLAPEYKAAATEL-------KGKAVLAKVDAINEI--EL-AKRWGIQ-GY-PTIYFFVNGVHVDTYYHDRKKRV 175 (192)
Q Consensus 108 wC~~C~~~~p~l~~la~~~-------~~~~~~~~vd~d~~~--~l-~~~~~v~-~~-Pt~~~~~~g~~v~~~y~~~g~~~ 175 (192)
.||.|-+..=.+++++++. +....++.+-|--|. +. -..+|+- +- -...+|++|+.+.+.. ....
T Consensus 270 SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~--~ee~- 346 (359)
T PF04551_consen 270 SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVI--PEEE- 346 (359)
T ss_dssp E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE---CSTC-
T ss_pred eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecC--CHHH-
Confidence 3787777655555555443 323458888887652 11 2346666 33 3478889999998642 3333
Q ss_pred cCCCHHHHHHHHHHh
Q 046498 176 FLEQGDDIVNYIKTK 190 (192)
Q Consensus 176 ~~~~~~~l~~~l~~~ 190 (192)
-.++|.+.|+++
T Consensus 347 ---~vd~L~~~I~~~ 358 (359)
T PF04551_consen 347 ---IVDELIELIEEH 358 (359)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhh
Confidence 478888888775
No 307
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=30.60 E-value=71 Score=18.35 Aligned_cols=9 Identities=22% Similarity=0.242 Sum_probs=4.0
Q ss_pred chhhHHHHH
Q 046498 3 TKAHLLALS 11 (192)
Q Consensus 3 ~k~~~~~~~ 11 (192)
||+.+..++
T Consensus 2 mKk~i~~i~ 10 (48)
T PRK10081 2 VKKTIAAIF 10 (48)
T ss_pred hHHHHHHHH
Confidence 454444433
No 308
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=30.39 E-value=95 Score=23.02 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=22.9
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
|+.+|..|+.+- +|.. +.+++.+.+++.
T Consensus 140 ~~lIF~SGKvvi-----tGak----s~~~~~~a~~~i 167 (174)
T cd04518 140 VLLLFSSGKMVI-----TGAK----SEEDAKRAVEKL 167 (174)
T ss_pred EEEEeCCCEEEE-----EecC----CHHHHHHHHHHH
Confidence 677788998887 6999 999998887765
No 309
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.36 E-value=53 Score=25.19 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=38.6
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCccc-HHHHHHcCCCcCcEE
Q 046498 102 VAFYAPWCFWSKKLAPEYKAAATELKGKAV-LAKVDAINE-IELAKRWGIQGYPTI 155 (192)
Q Consensus 102 v~f~a~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~~-~~l~~~~~v~~~Pt~ 155 (192)
|....+.++ +..+...+++|+++|.+... ...=||+.- .++|.++.-+.+|.+
T Consensus 78 I~lG~Td~~-~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~w 132 (214)
T KOG0324|consen 78 ILLGSTDLT-EDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSW 132 (214)
T ss_pred EEecCCCCC-HHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHH
Confidence 344455544 77888899999999988655 677788763 578888888877754
No 310
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=29.97 E-value=66 Score=20.60 Aligned_cols=7 Identities=29% Similarity=0.378 Sum_probs=3.7
Q ss_pred CcchhhH
Q 046498 1 MSTKAHL 7 (192)
Q Consensus 1 m~~k~~~ 7 (192)
|+.+..+
T Consensus 1 MKK~kii 7 (85)
T PF11337_consen 1 MKKKKII 7 (85)
T ss_pred CCchHHH
Confidence 7764333
No 311
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=29.75 E-value=2.6e+02 Score=21.57 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=40.1
Q ss_pred CChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHH
Q 046498 108 WCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYI 187 (192)
Q Consensus 108 wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l 187 (192)
.|+.|+++.-.|. .+.. ...+-.||....++-.+..--.+-|=++.+. |+ +.. +.+.+.++|
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d-~~---------~~t----Ds~~Ie~~L 81 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKFD-EK---------WVT----DSDKIEEFL 81 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEeC-Cc---------eec----cHHHHHHHH
Confidence 4888888777666 2222 3458899999888777665544444444443 21 233 556666777
Q ss_pred HHhh
Q 046498 188 KTKM 191 (192)
Q Consensus 188 ~~~l 191 (192)
++.+
T Consensus 82 ee~l 85 (221)
T KOG1422|consen 82 EEKL 85 (221)
T ss_pred HHhc
Confidence 6654
No 312
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=29.07 E-value=76 Score=26.31 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=39.3
Q ss_pred EEEEeCcccHHHHHHcCCCcCcEEEEEe--CCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 132 LAKVDAINEIELAKRWGIQGYPTIYFFV--NGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 132 ~~~vd~d~~~~l~~~~~v~~~Pt~~~~~--~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
.+..|..+...+..-|.+...|.+.+++ .|+.+.+. .|.. .++++.+-+++.+
T Consensus 135 lV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~w---s~vi----~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 135 LVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRW---SGVI----EPEQFLSDLNEFI 189 (356)
T ss_pred EEeeccCCCCchhhheeccCCceEEEECCchhhhhhhh---cccc----CHHHHHHHHHHHH
Confidence 4455555666788889999999888885 77777742 6888 7888777776654
No 313
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=28.98 E-value=99 Score=25.79 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=41.7
Q ss_pred CChhHhhhhHHHH----HHHHHhcCC---cEEEEEeCccc---HHHHHHcCCCc-CcEEEEEeCCEEEeEeeecCCcccc
Q 046498 108 WCFWSKKLAPEYK----AAATELKGK---AVLAKVDAINE---IELAKRWGIQG-YPTIYFFVNGVHVDTYYHDRKKRVF 176 (192)
Q Consensus 108 wC~~C~~~~p~l~----~la~~~~~~---~~~~~vd~d~~---~~l~~~~~v~~-~Pt~~~~~~g~~v~~~y~~~g~~~~ 176 (192)
.||-|..-.-.+. ++.+.+.+. ..++.+-|--| +.-...+|+.+ -+...+|.+|+.+... .+..
T Consensus 270 sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv---~~~~-- 344 (360)
T PRK00366 270 SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTL---PEEN-- 344 (360)
T ss_pred ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeee---ChHh--
Confidence 3666766544443 344444432 23666666422 12345677764 4567788899998853 3333
Q ss_pred CCCHHHHHHHHHHh
Q 046498 177 LEQGDDIVNYIKTK 190 (192)
Q Consensus 177 ~~~~~~l~~~l~~~ 190 (192)
-.++|.+.+++.
T Consensus 345 --~~~~l~~~i~~~ 356 (360)
T PRK00366 345 --IVEELEAEIEAY 356 (360)
T ss_pred --HHHHHHHHHHHH
Confidence 355666555543
No 314
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=28.83 E-value=1.7e+02 Score=19.09 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=37.5
Q ss_pred CCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcC-CCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHH
Q 046498 107 PWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWG-IQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVN 185 (192)
Q Consensus 107 ~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~-v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~ 185 (192)
.+|+.|++..-.+.+.. =...+..+|....++-..+.+ ...+|++. .+|..+ + +...+.+
T Consensus 20 g~cpf~~rvrl~L~eKg----i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i---~----------eS~~I~e 80 (91)
T cd03061 20 GNCPFCQRLFMVLWLKG----VVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK---T----------DNNKIEE 80 (91)
T ss_pred CCChhHHHHHHHHHHCC----CceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe---c----------CHHHHHH
Confidence 57999999877666541 112366677666555455544 45789654 455322 2 4455666
Q ss_pred HHHHh
Q 046498 186 YIKTK 190 (192)
Q Consensus 186 ~l~~~ 190 (192)
+|++.
T Consensus 81 YLde~ 85 (91)
T cd03061 81 FLEET 85 (91)
T ss_pred HHHHH
Confidence 66553
No 315
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=28.79 E-value=1e+02 Score=22.78 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.5
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
|+.+|..|+.+- +|.. +.+++.+.+++.
T Consensus 141 t~lIF~sGkvvi-----tGak----s~~~~~~a~~~i 168 (174)
T cd00652 141 VLLIFVSGKIVI-----TGAK----SREDIYEAVEKI 168 (174)
T ss_pred EEEEEcCCEEEE-----EecC----CHHHHHHHHHHH
Confidence 567788998887 5999 899998887764
No 316
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=27.60 E-value=72 Score=23.99 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=14.2
Q ss_pred HHHHHcCCCcCcEEEEEe
Q 046498 142 ELAKRWGIQGYPTIYFFV 159 (192)
Q Consensus 142 ~l~~~~~v~~~Pt~~~~~ 159 (192)
+-+.+.||.|+|++++=.
T Consensus 170 ~~A~~~Gv~GVP~fvv~~ 187 (209)
T cd03021 170 DEALKYGAFGLPWIVVTN 187 (209)
T ss_pred HHHHHcCCCCCCEEEEEc
Confidence 445678999999998754
No 317
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=27.44 E-value=1.5e+02 Score=21.50 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=34.3
Q ss_pred CCcEEEEEECCCChhHhhhhHHHHHHHHHhcC-CcEEEEEeCc
Q 046498 97 NQHVMVAFYAPWCFWSKKLAPEYKAAATELKG-KAVLAKVDAI 138 (192)
Q Consensus 97 ~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~-~~~~~~vd~d 138 (192)
++-+.+.++++.++-|.-+...++.+|+.|.+ .+.+-.+++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 45678899999999999999999999999988 4446666554
No 318
>PLN00062 TATA-box-binding protein; Provisional
Probab=27.36 E-value=1.1e+02 Score=22.78 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=22.3
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
++.+|..|+.+- +|.. +.+++.+.++..
T Consensus 140 ~~liF~sGkvvi-----tGak----s~~~~~~ai~~i 167 (179)
T PLN00062 140 VLLIFVSGKIVI-----TGAK----VREEIYTAFENI 167 (179)
T ss_pred EEEEeCCCEEEE-----EecC----CHHHHHHHHHHH
Confidence 567778888877 5999 899998887764
No 319
>PRK00394 transcription factor; Reviewed
Probab=27.15 E-value=1.2e+02 Score=22.64 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=22.7
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
++.+|..|+.+- +|.. +.+++.+.+++.
T Consensus 141 ~~lIF~SGKvvi-----tGak----s~~~~~~a~~~i 168 (179)
T PRK00394 141 VVLLFGSGKLVI-----TGAK----SEEDAEKAVEKI 168 (179)
T ss_pred EEEEEcCCEEEE-----EecC----CHHHHHHHHHHH
Confidence 677888998887 6999 899888877654
No 320
>PRK11372 lysozyme inhibitor; Provisional
Probab=26.97 E-value=57 Score=22.20 Aligned_cols=10 Identities=40% Similarity=0.378 Sum_probs=6.9
Q ss_pred CcchhhHHHH
Q 046498 1 MSTKAHLLAL 10 (192)
Q Consensus 1 m~~k~~~~~~ 10 (192)
|+||.++.++
T Consensus 1 ~~mk~ll~~~ 10 (109)
T PRK11372 1 MSMKKLLIIC 10 (109)
T ss_pred CchHHHHHHH
Confidence 8899866433
No 321
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=26.87 E-value=1.2e+02 Score=22.56 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=22.2
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
++.+|..|+.+- +|.. +.+++.+.++..
T Consensus 140 ~~liF~sGkvvi-----tGak----s~~~~~~a~~~i 167 (174)
T cd04516 140 VLLIFVSGKIVL-----TGAK----SREEIYQAFENI 167 (174)
T ss_pred EEEEeCCCEEEE-----EecC----CHHHHHHHHHHH
Confidence 466778898887 5999 899998888764
No 322
>PRK00394 transcription factor; Reviewed
Probab=26.56 E-value=1.2e+02 Score=22.57 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=24.0
Q ss_pred cEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 153 PTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 153 Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
.|+.+|..|+.+- +|.. +.+++...+++.
T Consensus 47 ~t~lIf~sGKiv~-----tGa~----S~~~a~~a~~~~ 75 (179)
T PRK00394 47 IAALIFRSGKVVC-----TGAK----SVEDLHEAVKII 75 (179)
T ss_pred eEEEEEcCCcEEE-----EccC----CHHHHHHHHHHH
Confidence 5888889998887 6999 899888877665
No 323
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=26.38 E-value=1.2e+02 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=22.6
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
|+.+|..|+.+- .|.. +.+++.+.+++.+
T Consensus 141 t~lIF~sGkivi-----tGak----s~~~~~~a~~~i~ 169 (174)
T cd04517 141 TLSIFSTGSVTV-----TGAR----SMEDVREAVEKIY 169 (174)
T ss_pred EEEEeCCCEEEE-----EecC----CHHHHHHHHHHHH
Confidence 567778888876 5999 8999988887653
No 324
>PRK13617 psbV cytochrome c-550; Provisional
Probab=25.92 E-value=90 Score=23.14 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=24.5
Q ss_pred CCCCceEecChhhHHHHHhcCCcEEEEEECCCChhHh---------hhhHHHHHHHHHh
Q 046498 77 DEKENAVNLSDKNFSDVLAKNQHVMVAFYAPWCFWSK---------KLAPEYKAAATEL 126 (192)
Q Consensus 77 ~~~~v~~~~~~~~~~~~l~~~~~vlv~f~a~wC~~C~---------~~~p~l~~la~~~ 126 (192)
..+.. +.++.++++. ++-+ | ...|..|+ ...|.++.++...
T Consensus 47 ~~g~~-~~~s~~~~~~----G~~~---F-~~~C~~CH~~g~T~~n~~vg~dL~~L~aa~ 96 (170)
T PRK13617 47 PSGSQ-VTFSESEIKA----GRKV---F-NTSCGTCHAGGITKTNQNVGLDPETLALAT 96 (170)
T ss_pred CCCCe-EEeCHHHHHH----HHHH---H-HcchhhhccCCCcCCCCCcCCCHHHHhccC
Confidence 33444 6666655443 3222 3 77899999 5566777775444
No 325
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=25.84 E-value=1.3e+02 Score=22.33 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=23.3
Q ss_pred cEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 153 PTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 153 Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
.|+.+|..|+.+- +|.. +.+++...+++.
T Consensus 48 ~t~lIf~sGKivi-----tGak----s~~~~~~a~~~~ 76 (174)
T cd00652 48 TTALIFSSGKMVI-----TGAK----SEEDAKLAARKY 76 (174)
T ss_pred EEEEEECCCEEEE-----EecC----CHHHHHHHHHHH
Confidence 4788889998887 6988 888888777654
No 326
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=25.31 E-value=1.4e+02 Score=22.19 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=21.9
Q ss_pred EEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 154 TIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 154 t~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
|+.+|..|+.+- +|.. +.++....+++.
T Consensus 49 t~lIF~SGKivi-----TGak----s~e~a~~a~~~i 76 (174)
T cd04516 49 TALIFSSGKMVC-----TGAK----SEDDSKLAARKY 76 (174)
T ss_pred EEEEECCCeEEE-----EecC----CHHHHHHHHHHH
Confidence 678888998887 6999 888887766654
No 327
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.16 E-value=1.8e+02 Score=19.98 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=23.4
Q ss_pred HHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHH
Q 046498 144 AKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 144 ~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
+-.+||.++|.++|= ++-+. | |.. +.+.=...+.
T Consensus 77 Aw~lGi~k~PAVV~D--~~~VV--Y---G~~----DV~~A~~~~~ 110 (113)
T TIGR03757 77 AWQLGVTKIPAVVVD--RRYVV--Y---GET----DVARALALIQ 110 (113)
T ss_pred HHHcCCccCCEEEEc--CCeEE--e---cCc----cHHHHHHHHH
Confidence 568999999998654 44555 7 877 6655544443
No 328
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.04 E-value=3.3e+02 Score=21.19 Aligned_cols=48 Identities=21% Similarity=0.119 Sum_probs=34.2
Q ss_pred hhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEEEe
Q 046498 110 FWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVHVD 165 (192)
Q Consensus 110 ~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~v~ 165 (192)
.+|..++..+..++++++..++++-=|++-. ..|. -.++-+++|+.+.
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDINfA----S~Ys----D~IVAlK~G~vv~ 216 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDINFA----SCYS----DHIVALKNGKVVK 216 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecccHH----Hhhh----hheeeecCCEEEe
Confidence 6899999999999999987555554455432 2221 2367789998887
No 329
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=24.92 E-value=1.3e+02 Score=24.26 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=48.7
Q ss_pred CcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEe----Ccc--cHHHHHHcCC-CcCcEEEEEeCCEEEeEeeec
Q 046498 98 QHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVD----AIN--EIELAKRWGI-QGYPTIYFFVNGVHVDTYYHD 170 (192)
Q Consensus 98 ~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd----~d~--~~~l~~~~~v-~~~Pt~~~~~~g~~v~~~y~~ 170 (192)
....|..|++.|..-..+.| +++..+= ..|..|= ... +..+...|.. .++|++..+-=|.+.. |
T Consensus 75 ~t~~IR~Y~sDCn~le~v~p----Aa~~~g~-kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEal--~-- 145 (305)
T COG5309 75 YTHSIRTYGSDCNTLENVLP----AAEASGF-KVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEAL--N-- 145 (305)
T ss_pred CCceEEEeeccchhhhhhHH----HHHhcCc-eEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhhh--h--
Confidence 34589999988875433333 2333331 1244442 211 2245556655 4789888888777766 6
Q ss_pred CCccccCCCHHHHHHHHHH
Q 046498 171 RKKRVFLEQGDDIVNYIKT 189 (192)
Q Consensus 171 ~g~~~~~~~~~~l~~~l~~ 189 (192)
.+.. ++++|.+.|.+
T Consensus 146 r~~~----tasql~~~I~~ 160 (305)
T COG5309 146 RNDL----TASQLIEYIDD 160 (305)
T ss_pred cCCC----CHHHHHHHHHH
Confidence 6778 89999988865
No 330
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=24.74 E-value=1.4e+02 Score=22.50 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=34.1
Q ss_pred hHHHHHhcCCcEEEEEEC--CCChhHhhhhHHHHHHHHHhcCCcE-EEEEeCcc
Q 046498 89 NFSDVLAKNQHVMVAFYA--PWCFWSKKLAPEYKAAATELKGKAV-LAKVDAIN 139 (192)
Q Consensus 89 ~~~~~l~~~~~vlv~f~a--~wC~~C~~~~p~l~~la~~~~~~~~-~~~vd~d~ 139 (192)
.|-+.+.+ .+.|+|.- +.-+.|-.+...+.+++.+|..+.+ .+...||.
T Consensus 25 ~fhd~~gd--SW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ 76 (224)
T KOG0854|consen 25 KFHDYLGD--SWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDD 76 (224)
T ss_pred ehhhhccc--ceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhh
Confidence 45555543 46666764 4568899999999999888877665 66666653
No 331
>PRK06287 cobalt transport protein CbiN; Validated
Probab=24.40 E-value=86 Score=21.26 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=9.4
Q ss_pred CcchhhHHHHHHHHHHHH
Q 046498 1 MSTKAHLLALSTTIFLLF 18 (192)
Q Consensus 1 m~~k~~~~~~~~~~~l~~ 18 (192)
|++|+++...+.+.+++.
T Consensus 2 ~~~~~~~~~~~~~all~a 19 (107)
T PRK06287 2 MDNKKFLIAGLIVALLIA 19 (107)
T ss_pred CcchhhHHHHHHHHHHHH
Confidence 666665554444444443
No 332
>PRK10853 putative reductase; Provisional
Probab=24.39 E-value=91 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.022 Sum_probs=17.0
Q ss_pred EEEEECCCChhHhhhhHHHHH
Q 046498 101 MVAFYAPWCFWSKKLAPEYKA 121 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~ 121 (192)
+..|+-+.|..|++...-|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 456888999999998877765
No 333
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=24.37 E-value=1.4e+02 Score=22.10 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=23.4
Q ss_pred cEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 153 PTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 153 Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
.+..+|..|+.+- +|.. +.++....+++.
T Consensus 48 ~t~lIF~SGKiv~-----tGak----s~~~a~~a~~~~ 76 (174)
T cd04518 48 IAALIFRSGKMVC-----TGAK----SVEDLHRAVKEI 76 (174)
T ss_pred EEEEEECCCeEEE-----EccC----CHHHHHHHHHHH
Confidence 4788888998887 6999 888888777664
No 334
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=24.05 E-value=1.5e+02 Score=21.90 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=22.8
Q ss_pred cEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 153 PTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 153 Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
.+..+|..|+.+- +|.. +.++++..+++.
T Consensus 48 ~t~lIF~sGKivi-----TGak----s~~~~~~a~~~~ 76 (174)
T cd04517 48 ATASVWSSGKITI-----TGAT----SEEEAKQAARRA 76 (174)
T ss_pred EEEEEECCCeEEE-----EccC----CHHHHHHHHHHH
Confidence 3677888998887 6998 888888877654
No 335
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=23.75 E-value=3.1e+02 Score=20.42 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=28.1
Q ss_pred EECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCCcCcEEEEEeCCEE
Q 046498 104 FYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQGYPTIYFFVNGVH 163 (192)
Q Consensus 104 f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 163 (192)
++...|++|++..-.+....-.| ....++.++.....+-.....+|++.. .+|..
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~----e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV----EKHVLLNDDEETPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe----EEEECCCCcchhHHHhcCCCCcceEEe-eCCeE
Confidence 55677999998777666543222 122222222222223233467897643 45543
No 336
>PLN00062 TATA-box-binding protein; Provisional
Probab=23.44 E-value=1.5e+02 Score=22.17 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=22.7
Q ss_pred cEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHh
Q 046498 153 PTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTK 190 (192)
Q Consensus 153 Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~ 190 (192)
.++.+|..|+.+- +|.. +.+++...+++.
T Consensus 48 ~t~lIF~SGKivi-----TGak----s~e~a~~a~~~~ 76 (179)
T PLN00062 48 TTALIFASGKMVC-----TGAK----SEHDSKLAARKY 76 (179)
T ss_pred EEEEEECCCeEEE-----EecC----CHHHHHHHHHHH
Confidence 3788888998887 6998 888888766654
No 337
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=23.40 E-value=81 Score=15.52 Aligned_cols=17 Identities=0% Similarity=0.047 Sum_probs=13.4
Q ss_pred CCccccCCCHHHHHHHHHHhh
Q 046498 171 RKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 171 ~g~~~~~~~~~~l~~~l~~~l 191 (192)
+|.+ +.+++.+++.+.+
T Consensus 14 dG~I----~~~el~~~l~~~l 30 (31)
T PF13405_consen 14 DGFI----DFEELRAILRKSL 30 (31)
T ss_dssp SSEE----EHHHHHHHHHHHT
T ss_pred CCcC----cHHHHHHHHHHhc
Confidence 6788 8999999887533
No 338
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=23.15 E-value=3.8e+02 Score=21.15 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=23.8
Q ss_pred HHHHHcCCCcCcE--EEEEeCCEEEeEeeecCCccccCCCHHHHHHHHH
Q 046498 142 ELAKRWGIQGYPT--IYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIK 188 (192)
Q Consensus 142 ~l~~~~~v~~~Pt--~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~ 188 (192)
++-+.+++...-+ ++++++...|. ++..|.. +++++....+
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIR--WagsG~A----t~~E~~~L~k 247 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIR--WAGSGPA----TPEELESLWK 247 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEE--eCccCCC----CHHHHHHHHH
Confidence 4455666664443 44444333444 4557888 8888876544
No 339
>PRK10026 arsenate reductase; Provisional
Probab=23.11 E-value=1.1e+02 Score=21.82 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=17.7
Q ss_pred EEEEECCCChhHhhhhHHHHHH
Q 046498 101 MVAFYAPWCFWSKKLAPEYKAA 122 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~l 122 (192)
+..|+.+.|..|++....|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5568889999999988777653
No 340
>PF15102 TMEM154: TMEM154 protein family
Probab=23.05 E-value=1.8e+02 Score=21.04 Aligned_cols=17 Identities=0% Similarity=0.100 Sum_probs=12.2
Q ss_pred CCceEecChhhHHHHHhc
Q 046498 79 KENAVNLSDKNFSDVLAK 96 (192)
Q Consensus 79 ~~v~~~~~~~~~~~~l~~ 96 (192)
..| .++.-+++++++++
T Consensus 120 psv-meiEmeeldkwm~s 136 (146)
T PF15102_consen 120 PSV-MEIEMEELDKWMNS 136 (146)
T ss_pred cch-hhhhHHHHHhHHHh
Confidence 356 77777888888854
No 341
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.78 E-value=1.3e+02 Score=20.97 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.2
Q ss_pred EEEEECCCChhHhhhhHHHHH
Q 046498 101 MVAFYAPWCFWSKKLAPEYKA 121 (192)
Q Consensus 101 lv~f~a~wC~~C~~~~p~l~~ 121 (192)
+..|+-+.|..|++....|++
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 456888999999998877765
No 342
>PRK13620 psbV cytochrome c-550; Provisional
Probab=22.39 E-value=57 Score=24.98 Aligned_cols=9 Identities=22% Similarity=-0.060 Sum_probs=7.9
Q ss_pred CCCChhHhh
Q 046498 106 APWCFWSKK 114 (192)
Q Consensus 106 a~wC~~C~~ 114 (192)
..||..|+.
T Consensus 112 ~~~Ca~CHV 120 (215)
T PRK13620 112 AYACGQCHV 120 (215)
T ss_pred HhhhhhccC
Confidence 889999994
No 343
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=21.61 E-value=1.1e+02 Score=24.08 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=43.4
Q ss_pred hhhHHHHHhcCCcEEEEEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCCC
Q 046498 87 DKNFSDVLAKNQHVMVAFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGIQ 150 (192)
Q Consensus 87 ~~~~~~~l~~~~~vlv~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v~ 150 (192)
+..+.+....++++. -+.+.|+.++.+...++++.++.+. .....++.++-+.+.++||+.
T Consensus 211 ~~~v~~A~~~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~-~~~~~~~~~~~~~~~~~~~~~ 271 (275)
T TIGR01287 211 SNIVQKAEIRKMTVI--EYDPESEQANEYRELAKKIYENTEF-VIPTPLTMDELEEILMKFGIM 271 (275)
T ss_pred ChHHHHHHHcCCceE--EeCCCCHHHHHHHHHHHHHHhcCCC-CCCCCCCHHHHHHHHHHHHHh
Confidence 345666667777764 3578888888888888887765432 336777888888888888863
No 344
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=21.35 E-value=1.2e+02 Score=18.16 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=27.5
Q ss_pred CChhHhhhhHHHHHHHHHhcCCcEEEEEeC-----cccHHHHHHcCCCcCcEEEEEeCCE
Q 046498 108 WCFWSKKLAPEYKAAATELKGKAVLAKVDA-----INEIELAKRWGIQGYPTIYFFVNGV 162 (192)
Q Consensus 108 wC~~C~~~~p~l~~la~~~~~~~~~~~vd~-----d~~~~l~~~~~v~~~Pt~~~~~~g~ 162 (192)
+|+.|++..=.+++.. .+.. +..++. +..+.+.+--.-..+|++.. .+|.
T Consensus 1 ~sP~a~Rv~i~l~~~g--l~~~--~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~ 55 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKG--LPYE--IKVVPLIPKGEQKPPEFLALNPRGKVPVLVD-PDGT 55 (70)
T ss_dssp T-HHHHHHHHHHHHHT--GTCE--EEEEETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTE
T ss_pred CchHhHHHHHHHHHhC--CCCE--EEEEeeecCccccChhhhccCcCeEEEEEEE-CCCC
Confidence 5888888777766653 2222 222322 12245555555668999866 4666
No 345
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=20.73 E-value=2e+02 Score=17.09 Aligned_cols=50 Identities=12% Similarity=-0.047 Sum_probs=29.6
Q ss_pred EEECCCChhHhhhhHHHHHHHHHhcCCcEEEEEeCcccHHHHHHcCC--CcCcEEE
Q 046498 103 AFYAPWCFWSKKLAPEYKAAATELKGKAVLAKVDAINEIELAKRWGI--QGYPTIY 156 (192)
Q Consensus 103 ~f~a~wC~~C~~~~p~l~~la~~~~~~~~~~~vd~d~~~~l~~~~~v--~~~Pt~~ 156 (192)
.++.+.|+.|++..-.+.+..-. .....+|....++...+.+- ..+|++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~p~~~~vP~l~ 54 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP----YEYVEEDLGNKSELLLASNPVHKKIPVLL 54 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC----CEEEEeCcccCCHHHHHhCCCCCCCCEEE
Confidence 46678899999988777665322 22344554333233334443 5899885
No 346
>PHA02151 hypothetical protein
Probab=20.48 E-value=61 Score=23.72 Aligned_cols=13 Identities=38% Similarity=1.007 Sum_probs=10.7
Q ss_pred CcEEEEEECCCCh
Q 046498 98 QHVMVAFYAPWCF 110 (192)
Q Consensus 98 ~~vlv~f~a~wC~ 110 (192)
..-.|+||..||.
T Consensus 204 h~~~v~fy~kwct 216 (217)
T PHA02151 204 HDRYVHFYKKWCT 216 (217)
T ss_pred CceEEEEehhhcc
Confidence 3468999999995
No 347
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=20.40 E-value=2e+02 Score=19.92 Aligned_cols=36 Identities=8% Similarity=0.324 Sum_probs=25.9
Q ss_pred CcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhhC
Q 046498 150 QGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKMA 192 (192)
Q Consensus 150 ~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l~ 192 (192)
.++|.+++|++-+.+.. + .=-. |.++|.+.+++..|
T Consensus 81 p~~PiL~YFkE~qsiHF-l--PiiF----d~~~L~~~l~~r~~ 116 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHF-L--PIIF----DPKQLREQLEERCG 116 (116)
T ss_pred CCCCEEEEEecCCccee-e--eeec----CHHHHHHHHHHhCc
Confidence 48999999997666553 1 2234 88999998887764
No 348
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.22 E-value=1.3e+02 Score=19.79 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=9.8
Q ss_pred CChhHhhhhHHHHHHHHHhcC
Q 046498 108 WCFWSKKLAPEYKAAATELKG 128 (192)
Q Consensus 108 wC~~C~~~~p~l~~la~~~~~ 128 (192)
|-||+-+....|=.+......
T Consensus 57 ~EPpSGEIESLLFslQaaiGa 77 (97)
T COG1930 57 WEPPSGEIESLLFSLQAAIGA 77 (97)
T ss_pred cCCCCccHHHHHHHHHHHhcc
Confidence 344444444444444444444
No 349
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.22 E-value=2.1e+02 Score=24.83 Aligned_cols=43 Identities=9% Similarity=0.399 Sum_probs=31.4
Q ss_pred ccHHHHHHcCCCcCcEEEEEeCCEEEeEeeecCCccccCCCHHHHHHHHHHhh
Q 046498 139 NEIELAKRWGIQGYPTIYFFVNGVHVDTYYHDRKKRVFLEQGDDIVNYIKTKM 191 (192)
Q Consensus 139 ~~~~l~~~~~v~~~Pt~~~~~~g~~v~~~y~~~g~~~~~~~~~~l~~~l~~~l 191 (192)
+.-++.++||++++ .++++++|+.-. +|.. +.+.+.+.++.++
T Consensus 354 dP~~l~~kygvD~v-RyflLr~~~l~~-----Dgdy----~eekl~k~~n~~L 396 (578)
T KOG0436|consen 354 DPFELVQKYGVDAV-RYFLLREGELGN-----DGDY----SEEKLIKIVNAHL 396 (578)
T ss_pred CHHHHHHHhCccce-eeEeeeccccCC-----CCCc----cHHHHHHHHHHHH
Confidence 34478999999975 456667886655 6888 8888888776543
No 350
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=20.01 E-value=95 Score=23.73 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=17.6
Q ss_pred EecChhhHHHHHhcCCcEEEEEEC
Q 046498 83 VNLSDKNFSDVLAKNQHVMVAFYA 106 (192)
Q Consensus 83 ~~~~~~~~~~~l~~~~~vlv~f~a 106 (192)
.-++++.|+.+.-.+++|+.+|++
T Consensus 85 hglsd~~Fd~lFT~DkPViFafHG 108 (203)
T PF09363_consen 85 HGLSDEEFDALFTKDKPVIFAFHG 108 (203)
T ss_dssp TS--HHHHHHHH-SSS-EEEEESS
T ss_pred CcCCHHHHHHhcCCCCCEEEEcCC
Confidence 446899999999999999999975
No 351
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=20.01 E-value=43 Score=27.19 Aligned_cols=23 Identities=9% Similarity=-0.179 Sum_probs=15.5
Q ss_pred CcchhhHHHHHHHHHHHHhhhhc
Q 046498 1 MSTKAHLLALSTTIFLLFIVFRL 23 (192)
Q Consensus 1 m~~k~~~~~~~~~~~l~~~~~~~ 23 (192)
|+.|.|+.+.+.+++++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (331)
T PRK03598 1 MKKKVVIGLAVVVLAAAVAGGWW 23 (331)
T ss_pred CCceEEEEhHHHHHHHHHHHhee
Confidence 88888887776666666554443
Done!