BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046499
         (124 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
          Length = 861

 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 53/142 (37%), Gaps = 48/142 (33%)

Query: 5   LEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGD---------INC 54
           + +H KT  F    P +DGRK  YTA  LP       +++    E  D         ++C
Sbjct: 80  MVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSC 139

Query: 55  -------------------------------------TVVGRSFF-APGFHKSEIGFGVE 76
                                                T VGRSFF A     + +G G E
Sbjct: 140 VSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGRE 199

Query: 77  CWKGFYQSLRPTQMGMSLNMGV 98
            W GF+QS+RP+   M LN+ V
Sbjct: 200 VWFGFHQSVRPSLWKMMLNIDV 221


>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
 pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
          Length = 859

 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 53/142 (37%), Gaps = 48/142 (33%)

Query: 5   LEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGD---------INC 54
           + +H KT  F    P +DGRK  YTA  LP       +++    E  D         ++C
Sbjct: 78  MVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSC 137

Query: 55  -------------------------------------TVVGRSFF-APGFHKSEIGFGVE 76
                                                T VGRSFF A     + +G G E
Sbjct: 138 VSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGRE 197

Query: 77  CWKGFYQSLRPTQMGMSLNMGV 98
            W GF+QS+RP+   M LN+ V
Sbjct: 198 VWFGFHQSVRPSLWKMMLNIDV 219


>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
          Gondii (Tgadf)
          Length = 139

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 2  KQLLEKHGK---THFNGCLPAYDGRKGFYTAG 30
          K ++EK GK     F G LPA D R G Y  G
Sbjct: 56 KIVVEKDGKGNADEFRGALPANDCRFGVYDCG 87


>pdb|2ZKQ|EE Chain e, Structure Of A Mammalian Ribosomal 40s Subunit Within An
          80s Complex Obtained By Docking Homology Models Of The
          Rna And Proteins Into An 8.7 A Cryo-Em Map
          Length = 179

 Score = 25.8 bits (55), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 59 RSFFAPGFHKSEIGFGVECWKGFYQSLR 86
          ++F A G H   +G GV+C K    ++R
Sbjct: 33 KAFVAIGDHNGHVGLGVKCSKEVATAIR 60


>pdb|2JE9|A Chain A, Crystal Structure Of Recombinant Dioclea Grandiflora
           Lectin Complexed With
           5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose
 pdb|2JE9|B Chain B, Crystal Structure Of Recombinant Dioclea Grandiflora
           Lectin Complexed With
           5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose
 pdb|2JE9|C Chain C, Crystal Structure Of Recombinant Dioclea Grandiflora
           Lectin Complexed With
           5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose
 pdb|2JE9|D Chain D, Crystal Structure Of Recombinant Dioclea Grandiflora
           Lectin Complexed With
           5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose
          Length = 239

 Score = 25.4 bits (54), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 34  FTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSE 70
           FT  D N++L     SGD     VGR+ F    H  E
Sbjct: 149 FTDSDGNLQLTKVSSSGDPQGNSVGRALFYAPVHIWE 185


>pdb|2JEC|A Chain A, Crystal Structure Of Recombinant Dioclea Grandiflora
           Lectin Mutant E123a-H131n-K132q Complexed With
           5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose
 pdb|2JEC|B Chain B, Crystal Structure Of Recombinant Dioclea Grandiflora
           Lectin Mutant E123a-H131n-K132q Complexed With
           5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose
 pdb|2JEC|C Chain C, Crystal Structure Of Recombinant Dioclea Grandiflora
           Lectin Mutant E123a-H131n-K132q Complexed With
           5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose
 pdb|2JEC|D Chain D, Crystal Structure Of Recombinant Dioclea Grandiflora
           Lectin Mutant E123a-H131n-K132q Complexed With
           5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose
          Length = 239

 Score = 25.4 bits (54), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 34  FTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSE 70
           FT  D N++L     SGD     VGR+ F    H  E
Sbjct: 149 FTDSDGNLQLTKVSSSGDPQGNSVGRALFYAPVHIWE 185


>pdb|1DGL|A Chain A, Lectin From Dioclea Grandiflora Complexed To Trimannoside
 pdb|1DGL|B Chain B, Lectin From Dioclea Grandiflora Complexed To Trimannoside
          Length = 237

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 34  FTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSE 70
           FT  D N++L     SGD     VGR+ F    H  E
Sbjct: 147 FTDSDGNLELTKVSSSGDPQGNSVGRALFYAPVHIWE 183


>pdb|3SH3|A Chain A, Crystal Structure Of A Pro-Inflammatory Lectin From The
           Seeds Of Dioclea Wilsonii Standl
          Length = 237

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 34  FTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSE 70
           FT  D N++L     SGD     VGR+ F    H  E
Sbjct: 147 FTDSDGNLELTKVSNSGDPQGNSVGRALFYAPVHIWE 183


>pdb|2GDF|A Chain A, Crystal Structure Of Dioclea Violacea Seed Lectin
 pdb|2GDF|B Chain B, Crystal Structure Of Dioclea Violacea Seed Lectin
 pdb|2GDF|C Chain C, Crystal Structure Of Dioclea Violacea Seed Lectin
 pdb|2GDF|D Chain D, Crystal Structure Of Dioclea Violacea Seed Lectin
 pdb|3AX4|A Chain A, Three-Dimensional Structure Of Lectin From Dioclea
           Violacea And Comparative Vasorelaxant Effects With
           Dioclea Rostrata
          Length = 237

 Score = 25.4 bits (54), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 34  FTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSE 70
           FT  D N++L     SGD     VGR+ F    H  E
Sbjct: 147 FTDSDGNLELTKVSSSGDPQGNSVGRALFYAPVHIWE 183


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,989,902
Number of Sequences: 62578
Number of extensions: 161870
Number of successful extensions: 239
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 14
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)