Query 046499
Match_columns 124
No_of_seqs 105 out of 458
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 22:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 99.9 5.3E-25 1.8E-29 192.8 8.8 122 2-123 78-294 (861)
2 4f1n_A Kpago; argonaute, RNAI, 99.8 3.1E-20 1.1E-24 165.0 7.2 42 55-96 236-280 (1046)
3 1u04_A Argonaute, hypothetical 97.3 0.00018 6.2E-09 62.7 4.5 86 4-98 41-146 (771)
4 1yvu_A Hypothetical protein AQ 96.7 0.00053 1.8E-08 59.2 1.8 79 17-96 48-157 (706)
5 3mj0_A Protein argonaute-2; ar 94.8 0.0058 2E-07 41.8 0.3 28 97-124 37-69 (124)
6 1vyn_A Argonaute2; nucleic aci 94.7 0.0097 3.3E-07 41.4 1.3 27 97-123 39-70 (143)
7 1r6z_P Chimera of maltose-bind 88.5 0.087 3E-06 42.6 -0.0 27 97-123 419-450 (509)
8 2xfm_A MIWI, PIWI-like protein 84.7 0.26 8.9E-06 34.3 0.8 26 97-123 31-56 (150)
9 3ho1_A Argonaute; argonaute, p 52.2 16 0.00056 31.4 4.6 50 72-122 142-214 (685)
10 2wgn_B Inhibitor of cysteine p 38.9 86 0.0029 21.0 6.1 56 36-93 42-108 (132)
11 3o7v_X PIWI-like protein 1; PI 37.6 10 0.00034 25.4 0.8 21 97-118 30-50 (124)
12 1odm_A Isopenicillin N synthas 35.3 14 0.00047 28.4 1.4 23 73-96 229-253 (331)
13 3qir_A PIWI-like protein 2; st 31.6 18 0.00062 24.9 1.4 19 97-116 30-48 (148)
14 4e1s_A Intimin; outer membrane 24.3 10 0.00035 28.6 -1.1 28 56-83 64-94 (242)
15 3on7_A Oxidoreductase, iron/as 23.9 25 0.00087 26.2 1.1 24 73-96 189-214 (280)
16 4e1t_A Invasin; outer membrane 23.1 11 0.00038 28.4 -1.1 29 55-83 66-97 (245)
17 3oox_A Putative 2OG-Fe(II) oxy 21.2 31 0.0011 26.1 1.1 24 73-96 206-231 (312)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=99.91 E-value=5.3e-25 Score=192.80 Aligned_cols=122 Identities=34% Similarity=0.626 Sum_probs=94.7
Q ss_pred hHHHHhhccCCCCCCCceEeCCCceeecCCCCCCCc--eEEEEecCCCCC------------------------------
Q 046499 2 KQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSK--DFNIKLIDRDES------------------------------ 49 (124)
Q Consensus 2 ~~l~~~~~~~~f~~~~~ayDG~k~lyt~~~L~~~~~--~f~V~l~~~~~~------------------------------ 49 (124)
++|+++++...|++..+||||+++|||+++||+++. ++.|+++.++++
T Consensus 78 ~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~~~~~~~~~v~~~~~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~ 157 (861)
T 4f3t_A 78 EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVP 157 (861)
T ss_dssp HHHHHHSCCCCCTTCCCEECSSSEEEESSCCSCSSCEEEEECCC-------CEEEEEEEEEEEEHHHHHHHHHTCSSSCC
T ss_pred HHHHHHhhhhhhcCceEEEcCcceEEECCcCCCCCcceEEEEecCCCCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCc
Confidence 456677776789988899999999999999997543 233333321110
Q ss_pred --------------CccceeeecccccCCCCC-CccCCCcEEEEeeeeeeeeccCCceEEEe------------------
Q 046499 50 --------------GDINCTVVGRSFFAPGFH-KSEIGFGVECWKGFYQSLRPTQMGMSLNM------------------ 96 (124)
Q Consensus 50 --------------~s~~~~~vgrsff~~~~~-~~~Lg~G~e~w~Gf~qSvR~~~~~l~LNv------------------ 96 (124)
|+.++..+|||||+++.+ ..+||+|+|+|+||||||||++++|+|||
T Consensus 158 ~~~iq~Lniilr~~~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~ 237 (861)
T 4f3t_A 158 FETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVC 237 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHH
Confidence 566789999999987654 56899999999999999999999999999
Q ss_pred ----------------------------ecEEEEeeCCCc--eeEEecCCCcccccC
Q 046499 97 ----------------------------GVKVEVAHGESK--RYRVSGITSQPTKKL 123 (124)
Q Consensus 97 ----------------------------g~kv~~~h~~~~--~y~i~gls~~pa~~~ 123 (124)
|++|+++|++.. +|+|.+|+..||+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~ 294 (861)
T 4f3t_A 238 EVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQ 294 (861)
T ss_dssp HHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTC
T ss_pred HHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCc
Confidence 889999997643 799999999898864
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=99.80 E-value=3.1e-20 Score=164.95 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=35.1
Q ss_pred eeeccc-ccCCCCC--CccCCCcEEEEeeeeeeeeccCCceEEEe
Q 046499 55 TVVGRS-FFAPGFH--KSEIGFGVECWKGFYQSLRPTQMGMSLNM 96 (124)
Q Consensus 55 ~~vgrs-ff~~~~~--~~~Lg~G~e~w~Gf~qSvR~~~~~l~LNv 96 (124)
..+|++ ||..+.. ..+||+|+|+|+||||||||+++||+|||
T Consensus 236 ~~vg~nkFF~~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNv 280 (1046)
T 4f1n_A 236 FQVQGNKFFIFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNT 280 (1046)
T ss_dssp EEETTTEEEECSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEE
T ss_pred EEcCCcccccCCCCCccccCCCcEEEEEeEeeeEEecCCceEEEE
Confidence 455555 8865432 67899999999999999999999999998
No 3
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=97.30 E-value=0.00018 Score=62.67 Aligned_cols=86 Identities=12% Similarity=-0.000 Sum_probs=64.5
Q ss_pred HHHhhccCCCCCCCceEeCCCc--eeecCCCCCCCceEEEEecCCCCC-------------Cccc-----eeeecccccC
Q 046499 4 LLEKHGKTHFNGCLPAYDGRKG--FYTAGALPFTSKDFNIKLIDRDES-------------GDIN-----CTVVGRSFFA 63 (124)
Q Consensus 4 l~~~~~~~~f~~~~~ayDG~k~--lyt~~~L~~~~~~f~V~l~~~~~~-------------~s~~-----~~~vgrsff~ 63 (124)
++.+|+ ..+| -.+||| .+ ||++++|+-++..+.|++...++- -+.+ ...+||+||.
T Consensus 41 ~~~~~~-~~~g--~~~fdg-~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~i~r~~l~~~~~~~~~l~~~~r~~~~ 116 (771)
T 1u04_A 41 SIYRLA-YENV--GIVIDP-ENLIIATTKELEYEGEFIPEGEISFSELRNDYQSKLVLRLLKENGIGEYELSKLLRKFRK 116 (771)
T ss_dssp CHHHHH-HHTT--EEEEET-TTTEEEESSCCCCSSCCEEEEEECGGGSCHHHHHHHHHHHHHHTTCSHHHHHHHHTTTSC
T ss_pred HHHHHH-hhcC--cEEecC-cceeeeccceeccCCCeEEEEEEEcceecHHHHHHHHHHHHHHcccchHHHHHHhhhcCC
Confidence 455665 5576 459999 66 999999997777788877654421 2333 6688999996
Q ss_pred CCCCCccCCCcEEEEeeeeeeeeccCCceEEEeec
Q 046499 64 PGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98 (124)
Q Consensus 64 ~~~~~~~Lg~G~e~w~Gf~qSvR~~~~~l~LNvg~ 98 (124)
+ +++ +-+++|.||-.|||..+++++|++-+
T Consensus 117 ~----~~~-~~~~~~~~~~tsi~~~e~~~ll~~di 146 (771)
T 1u04_A 117 P----KTF-GDYKVIPSVEMSVIKHDEDFYLVIHI 146 (771)
T ss_dssp C----EEE-TTEEEEEEEEEEEEECSSCEEEEEEE
T ss_pred C----ccc-cccEEEECceeeEEecCCceEEEEEe
Confidence 5 345 46999999999999999999998733
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=96.67 E-value=0.00053 Score=59.20 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=56.2
Q ss_pred CceEeCCCceeecCCCCCC--------CceEEEEecCCCC----C---------------CccceeeecccccCCCCCCc
Q 046499 17 LPAYDGRKGFYTAGALPFT--------SKDFNIKLIDRDE----S---------------GDINCTVVGRSFFAPGFHKS 69 (124)
Q Consensus 17 ~~ayDG~k~lyt~~~L~~~--------~~~f~V~l~~~~~----~---------------~s~~~~~vgrsff~~~~~~~ 69 (124)
.+.|--....|++++..-+ +..+.+++..+-. + -...+..+||+||.+.. +.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~igr~~~~~~~-~~ 126 (706)
T 1yvu_A 48 LPTFRREDEFWCAGKVEKDTLYLTLSNGEIVELKRVGEEEFRGFQNERECQELFRDFLTKTKVKDKFISDFYKKFRD-KI 126 (706)
T ss_dssp SCEEEETTEEEESSCCTTCCCEEEECSSSCEEEEECCCEECCCCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH
T ss_pred CccccccccceeccccccceEEEEcCCCCEEEEEEEEEeeccCCCCCHHHHHHHHHHHHHcCChHhhhCccccCccc-cc
Confidence 5677777888999998643 3345565544322 1 11233479999997643 55
Q ss_pred cC---CCcEEEEeeeeeeeeccC-CceEEEe
Q 046499 70 EI---GFGVECWKGFYQSLRPTQ-MGMSLNM 96 (124)
Q Consensus 70 ~L---g~G~e~w~Gf~qSvR~~~-~~l~LNv 96 (124)
++ ..++|+|.||-.||+..+ ++++||+
T Consensus 127 ~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~ 157 (706)
T 1yvu_A 127 TVQGKNRKIALIPEVNEKVLKSEEGYFLLHL 157 (706)
T ss_dssp EEECSSCEEEEEEEEEEEEEEBSSSCEEEEE
T ss_pred cccCCCCcEEEccCeEEEEEeccCCCeEEEE
Confidence 66 467999999999999988 9999998
No 5
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=94.81 E-value=0.0058 Score=41.81 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=23.3
Q ss_pred ecEEEEeeCC---C-c-eeEEecCCCcccccCC
Q 046499 97 GVKVEVAHGE---S-K-RYRVSGITSQPTKKLK 124 (124)
Q Consensus 97 g~kv~~~h~~---~-~-~y~i~gls~~pa~~~~ 124 (124)
|++|+++|++ . . .|+|.||+..||++++
T Consensus 37 Gl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~ 69 (124)
T 3mj0_A 37 GINVVYTPPQSFQSAPRVYRVNGLSRAPASSET 69 (124)
T ss_dssp TCEEEECCCGGGTCCCEEEECCEEEEEETTTCE
T ss_pred CeEEEEecccccccCCceEEEEeccCCCccccE
Confidence 9999999963 2 2 7999999999998763
No 6
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=94.73 E-value=0.0097 Score=41.41 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=23.0
Q ss_pred ecEEEEeeCC----Cc-eeEEecCCCcccccC
Q 046499 97 GVKVEVAHGE----SK-RYRVSGITSQPTKKL 123 (124)
Q Consensus 97 g~kv~~~h~~----~~-~y~i~gls~~pa~~~ 123 (124)
|++|.++|++ .. +|+|.||+..||+++
T Consensus 39 Gl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~ 70 (143)
T 1vyn_A 39 GINVVYTPPQSFQSAPRVYRVNGLSRAPASSE 70 (143)
T ss_dssp TEEEEECCCTTSCCCCEEEEEEEEEEEETTTC
T ss_pred CeEEEEecCCCccCCCceEEEeeccCCCccce
Confidence 9999999965 23 799999999999875
No 7
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=88.46 E-value=0.087 Score=42.58 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=23.5
Q ss_pred ecEEEEeeCCC----c-eeEEecCCCcccccC
Q 046499 97 GVKVEVAHGES----K-RYRVSGITSQPTKKL 123 (124)
Q Consensus 97 g~kv~~~h~~~----~-~y~i~gls~~pa~~~ 123 (124)
||+|+++|++. . +|||.||+..+|+++
T Consensus 419 ~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 450 (509)
T 1r6z_P 419 GINVVYTPPQSFQSAPRVYRVNGLSRAPASSE 450 (509)
T ss_dssp TCEEEECCCGGGCCCCEEEECCEEEEEETTTC
T ss_pred CcEEEEecCCCccCCCCeEEEeeCCCCChhhc
Confidence 99999999764 3 699999999999875
No 8
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=84.66 E-value=0.26 Score=34.29 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=21.7
Q ss_pred ecEEEEeeCCCceeEEecCCCcccccC
Q 046499 97 GVKVEVAHGESKRYRVSGITSQPTKKL 123 (124)
Q Consensus 97 g~kv~~~h~~~~~y~i~gls~~pa~~~ 123 (124)
|++|.++|.+. .|+|.+|+..++.+.
T Consensus 31 g~~V~t~y~nr-~yrI~~i~~~~~p~~ 56 (150)
T 2xfm_A 31 GLIVLTKYNNK-TYRVDDIDWDQNPKS 56 (150)
T ss_dssp TCEEEETTTTE-EEECCEEETTCCTTC
T ss_pred CcEEEEeeCCc-eEEeeecCCCCCccC
Confidence 89999999653 899999998887654
No 9
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=52.18 E-value=16 Score=31.38 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=37.5
Q ss_pred CCcEEEEeeeeeeeeccC-CceEEEe----------------------ecEEEEeeCCCceeEEecCCCccccc
Q 046499 72 GFGVECWKGFYQSLRPTQ-MGMSLNM----------------------GVKVEVAHGESKRYRVSGITSQPTKK 122 (124)
Q Consensus 72 g~G~e~w~Gf~qSvR~~~-~~l~LNv----------------------g~kv~~~h~~~~~y~i~gls~~pa~~ 122 (124)
|.|+|+.+|+-=.|-++. ++++|+| -..|..++... .|+|..++.+..++
T Consensus 142 ~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~~~~~~~~~~l~~~~~~~~~v~~~y~~~-~~~~~~~~~~~p~~ 214 (685)
T 3ho1_A 142 GPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRR-TWELLRLGEEDPKE 214 (685)
T ss_dssp ETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEEECSCHHHHHHHSCCCCSEEEESSSCC-EECCCEEECCCTTC
T ss_pred CCceEEecceEEEEEECCCCcEEEEEeeheeecChhhHHHHHHhCCCccHHHhhhcccc-eEEEeecccCCchh
Confidence 789999999999999997 8999999 24466666533 67777666655544
No 10
>2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa}
Probab=38.95 E-value=86 Score=20.98 Aligned_cols=56 Identities=9% Similarity=0.189 Sum_probs=32.1
Q ss_pred CceEEEEecCCCCC--------Cc-cceeeecccccCCCCC-CccCC-CcEEEEeeeeeeeeccCCceE
Q 046499 36 SKDFNIKLIDRDES--------GD-INCTVVGRSFFAPGFH-KSEIG-FGVECWKGFYQSLRPTQMGMS 93 (124)
Q Consensus 36 ~~~f~V~l~~~~~~--------~s-~~~~~vgrsff~~~~~-~~~Lg-~G~e~w~Gf~qSvR~~~~~l~ 93 (124)
+..|.|.|+..... +. ..+..++..+|.++.. ..-+| +|.+.| .|+.+++++..+.
T Consensus 42 Ge~~~I~L~~NPTTGY~W~~~~~~~~vl~~l~~~~y~~~~~~~~~vGagG~~~w--~f~A~~~G~~~i~ 108 (132)
T 2wgn_B 42 GQELVLTLPSNPTTGFRWELRNPAASVLKRLGPEVYSNSEEDSGLVGSGGESTW--RFRVAASGDDRLE 108 (132)
T ss_dssp TCEEEEEECCCTTTSCEEEEEECCTTTEEECCSCCSCSSCSSCCCSSSSCCEEE--EEEECSCEEEEEE
T ss_pred CCEEEEEeCCCCCCCeEEEEecCCCceEEecccceecCCCCccCCcCCCceEEE--EEEEcCCceEEEE
Confidence 35688888754311 11 1233466678865411 22355 789999 5787787755443
No 11
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=37.59 E-value=10 Score=25.45 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.4
Q ss_pred ecEEEEeeCCCceeEEecCCCc
Q 046499 97 GVKVEVAHGESKRYRVSGITSQ 118 (124)
Q Consensus 97 g~kv~~~h~~~~~y~i~gls~~ 118 (124)
|+.|.+.|.+. .|+|.+++..
T Consensus 30 G~~V~t~ynnk-~YrI~~I~~~ 50 (124)
T 3o7v_X 30 GLVVLTKYNNK-TYRVDDIDWD 50 (124)
T ss_dssp TCEEEETTSSC-EEECCEEETT
T ss_pred CCEEEEeeCCe-EEEEeeeCCC
Confidence 89999999754 8999999843
No 12
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=35.26 E-value=14 Score=28.39 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.3
Q ss_pred CcEEEE--eeeeeeeeccCCceEEEe
Q 046499 73 FGVECW--KGFYQSLRPTQMGMSLNM 96 (124)
Q Consensus 73 ~G~e~w--~Gf~qSvR~~~~~l~LNv 96 (124)
+|||++ .| ...|.|..+.+.+||
T Consensus 229 ~GLQV~~~~g-Wi~V~p~pgalvVNi 253 (331)
T 1odm_A 229 QNLQVETAAG-YQDIEADDTGYLINC 253 (331)
T ss_dssp CCEEEEETTE-EEECCCCTTSEEEEE
T ss_pred CCEEEEcCCC-eEECCCCCCeEEEEc
Confidence 799999 38 999999999999999
No 13
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=31.60 E-value=18 Score=24.86 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.9
Q ss_pred ecEEEEeeCCCceeEEecCC
Q 046499 97 GVKVEVAHGESKRYRVSGIT 116 (124)
Q Consensus 97 g~kv~~~h~~~~~y~i~gls 116 (124)
|+.|.+.|.+. .|+|.+++
T Consensus 30 g~~V~t~ynnk-~YrI~~I~ 48 (148)
T 3qir_A 30 GNIVITRYNNR-TYRIDDVD 48 (148)
T ss_dssp TCEEEETTTCC-EEECCEEE
T ss_pred CCEEEEccCCc-EEEEeeec
Confidence 88999988643 89999995
No 14
>4e1s_A Intimin; outer membrane beta barrel, adhesin; HET: OLC OLB; 1.85A {Escherichia coli}
Probab=24.31 E-value=10 Score=28.57 Aligned_cols=28 Identities=25% Similarity=0.853 Sum_probs=19.5
Q ss_pred eeccc-ccCCCCC--CccCCCcEEEEeeeee
Q 046499 56 VVGRS-FFAPGFH--KSEIGFGVECWKGFYQ 83 (124)
Q Consensus 56 ~vgrs-ff~~~~~--~~~Lg~G~e~w~Gf~q 83 (124)
++|=| ||+.+.. -..+|-|.|+|.+++.
T Consensus 64 m~G~N~FyD~d~~~~h~R~glG~E~~~d~l~ 94 (242)
T 4e1s_A 64 MLGYNVFIDQDFSGDNTRLGIGGEYWRDYFK 94 (242)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEETTEE
T ss_pred EEEeEEEEeccCCCCceeEEeEEEEEecceE
Confidence 56666 8864332 3568889999998764
No 15
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=23.89 E-value=25 Score=26.25 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=21.6
Q ss_pred CcEEEE--eeeeeeeeccCCceEEEe
Q 046499 73 FGVECW--KGFYQSLRPTQMGMSLNM 96 (124)
Q Consensus 73 ~G~e~w--~Gf~qSvR~~~~~l~LNv 96 (124)
+|||++ .|=...|.|..+.+.+||
T Consensus 189 ~GLqV~~~~g~W~~V~p~pg~~vVNi 214 (280)
T 3on7_A 189 PGLQVKAKDGSWLDVPSDFGNIIINI 214 (280)
T ss_dssp CCEEEECTTSCEEECCCCTTCEEEEE
T ss_pred CCeEEEcCCCCEEECcCCCCEEEEEc
Confidence 799998 478889999999999999
No 16
>4e1t_A Invasin; outer membrane beta barrel, adhesin, integrin, cell adhesion; HET: OLC OLB; 2.26A {Yersinia pseudotuberculosis}
Probab=23.13 E-value=11 Score=28.43 Aligned_cols=29 Identities=28% Similarity=0.710 Sum_probs=19.7
Q ss_pred eeeccc-ccCCCCC--CccCCCcEEEEeeeee
Q 046499 55 TVVGRS-FFAPGFH--KSEIGFGVECWKGFYQ 83 (124)
Q Consensus 55 ~~vgrs-ff~~~~~--~~~Lg~G~e~w~Gf~q 83 (124)
-++|=| ||+.... ...+|-|.|+|..|+.
T Consensus 66 wm~G~N~FyD~d~t~~h~R~glG~E~~~d~l~ 97 (245)
T 4e1t_A 66 WLYGLNTFYDNDLTGHNHRIGLGAEAWTDYLQ 97 (245)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEEETTEE
T ss_pred EEEEeEEEEecCCCCCCceeEeEEEEEeCceE
Confidence 356656 8864332 4568889999998764
No 17
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=21.19 E-value=31 Score=26.08 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.2
Q ss_pred CcEEEE--eeeeeeeeccCCceEEEe
Q 046499 73 FGVECW--KGFYQSLRPTQMGMSLNM 96 (124)
Q Consensus 73 ~G~e~w--~Gf~qSvR~~~~~l~LNv 96 (124)
+|||++ .|=...|.|..+.+.+||
T Consensus 206 ~GLqV~~~~g~W~~V~p~pg~~vVNi 231 (312)
T 3oox_A 206 GGLEVLDRDGQWLPINPPPGCLVINI 231 (312)
T ss_dssp SCEEEECTTSCEEECCCCSSCEEEEE
T ss_pred CceEEECCCCcEEECCCCCCeEEEEh
Confidence 799997 377888999989999999
Done!