Query 046501
Match_columns 100
No_of_seqs 109 out of 1032
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 12:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 99.9 1.9E-23 4.2E-28 133.8 9.3 98 2-100 23-121 (489)
2 PLN02971 tryptophan N-hydroxyl 99.7 1.1E-17 2.4E-22 109.0 8.3 96 4-100 56-153 (543)
3 PLN02655 ent-kaurene oxidase 99.7 1.4E-17 3E-22 106.8 8.5 93 7-100 1-93 (466)
4 PLN02687 flavonoid 3'-monooxyg 99.7 1.9E-17 4E-22 107.4 8.2 95 4-100 33-127 (517)
5 PLN03141 3-epi-6-deoxocathaste 99.7 3.4E-17 7.3E-22 104.7 6.4 97 1-100 3-102 (452)
6 PLN00110 flavonoid 3',5'-hydro 99.7 1.2E-16 2.7E-21 103.4 8.5 95 3-100 29-124 (504)
7 PLN02183 ferulate 5-hydroxylas 99.7 1.3E-16 2.7E-21 103.5 7.9 96 2-100 33-129 (516)
8 PLN00168 Cytochrome P450; Prov 99.7 2E-16 4.3E-21 102.7 8.2 96 3-100 33-131 (519)
9 PLN03018 homomethionine N-hydr 99.7 4.8E-16 1E-20 101.3 8.2 96 5-100 40-136 (534)
10 PTZ00404 cytochrome P450; Prov 99.6 8.6E-16 1.9E-20 98.9 6.6 93 4-100 28-120 (482)
11 PLN02500 cytochrome P450 90B1 99.6 6E-16 1.3E-20 99.8 5.6 94 4-100 37-133 (490)
12 PLN03112 cytochrome P450 famil 99.6 1.8E-15 3.9E-20 98.1 7.8 94 4-100 31-125 (514)
13 PLN03234 cytochrome P450 83B1; 99.6 2.4E-15 5.3E-20 97.1 8.3 75 3-78 26-100 (499)
14 PLN02394 trans-cinnamate 4-mon 99.6 4.9E-15 1.1E-19 95.8 8.8 96 3-100 28-124 (503)
15 PLN02774 brassinosteroid-6-oxi 99.6 1E-15 2.2E-20 98.2 5.0 93 3-100 29-121 (463)
16 PLN02987 Cytochrome P450, fami 99.6 1E-15 2.3E-20 98.5 4.9 94 4-100 29-125 (472)
17 PLN02966 cytochrome P450 83A1 99.6 5.2E-15 1.1E-19 95.8 7.7 74 2-76 26-99 (502)
18 PLN02290 cytokinin trans-hydro 99.6 2.1E-15 4.5E-20 97.8 5.5 95 4-100 41-152 (516)
19 PF00067 p450: Cytochrome P450 99.6 6.4E-16 1.4E-20 97.5 2.3 93 7-100 1-95 (463)
20 PLN02196 abscisic acid 8'-hydr 99.6 9.5E-15 2.1E-19 93.8 6.1 92 5-100 35-126 (463)
21 PLN02302 ent-kaurenoic acid ox 99.4 4.6E-13 1E-17 86.4 7.0 93 4-100 41-138 (490)
22 KOG0157 Cytochrome P450 CYP4/C 99.4 4.2E-13 9.1E-18 87.0 5.5 92 5-100 35-129 (497)
23 KOG0158 Cytochrome P450 CYP3/C 99.4 4.7E-13 1E-17 86.3 5.2 95 3-100 30-126 (499)
24 PLN02936 epsilon-ring hydroxyl 99.4 2E-12 4.2E-17 83.7 6.0 95 3-100 10-107 (489)
25 PLN02169 fatty acid (omega-1)- 99.3 3.4E-12 7.4E-17 82.9 6.6 95 2-100 29-127 (500)
26 PLN03195 fatty acid omega-hydr 99.3 1.2E-11 2.6E-16 80.6 6.1 88 7-100 32-123 (516)
27 PLN02738 carotene beta-ring hy 99.2 8.3E-11 1.8E-15 78.4 6.7 82 15-100 141-222 (633)
28 PLN02648 allene oxide synthase 99.1 4.5E-11 9.8E-16 77.4 2.0 92 5-100 17-126 (480)
29 KOG0159 Cytochrome P450 CYP11/ 98.9 2E-09 4.2E-14 69.5 4.9 92 7-100 52-150 (519)
30 KOG0684 Cytochrome P450 [Secon 98.8 1.9E-08 4.2E-13 64.2 5.5 65 6-72 32-97 (486)
31 PLN02426 cytochrome P450, fami 98.2 6E-06 1.3E-10 54.2 6.1 81 13-100 49-131 (502)
32 COG2124 CypX Cytochrome P450 [ 88.3 0.82 1.8E-05 29.9 3.4 41 29-69 25-67 (411)
33 PF13625 Helicase_C_3: Helicas 79.3 7.6 0.00017 21.1 4.3 38 27-66 75-112 (129)
34 KOG0114 Predicted RNA-binding 54.6 33 0.00072 18.5 6.0 47 29-75 32-85 (124)
35 cd01646 RT_Bac_retron_I RT_Bac 43.7 59 0.0013 18.2 4.4 54 4-65 52-106 (158)
36 PRK02302 hypothetical protein; 43.4 48 0.0011 17.1 4.8 34 34-67 21-54 (89)
37 PLN03134 glycine-rich RNA-bind 42.9 61 0.0013 18.1 5.7 40 28-67 47-95 (144)
38 COG1965 CyaY Protein implicate 41.5 52 0.0011 17.6 2.8 28 40-67 36-63 (106)
39 PRK02886 hypothetical protein; 41.0 53 0.0012 16.9 4.8 34 34-67 19-52 (87)
40 TIGR01661 ELAV_HUD_SF ELAV/HuD 39.3 1E+02 0.0022 19.6 6.0 47 29-75 283-339 (352)
41 PF10915 DUF2709: Protein of u 37.8 93 0.002 18.7 4.0 55 13-67 90-146 (238)
42 TIGR03422 mito_frataxin fratax 37.7 62 0.0013 16.9 2.8 28 40-67 35-62 (97)
43 KOG4241 Mitochondrial ribosoma 37.5 34 0.00074 20.8 2.0 27 41-67 138-164 (245)
44 PF13010 pRN1_helical: Primase 35.7 22 0.00047 19.5 0.9 25 55-79 93-117 (135)
45 COG4471 Uncharacterized protei 35.6 68 0.0015 16.6 4.6 35 33-67 19-53 (90)
46 COG3265 GntK Gluconate kinase 35.3 54 0.0012 18.9 2.4 48 29-76 71-119 (161)
47 PF13893 RRM_5: RNA recognitio 35.2 47 0.001 14.7 4.6 34 33-66 2-39 (56)
48 COG5329 Phosphoinositide polyp 34.6 59 0.0013 22.9 2.9 26 27-52 294-319 (570)
49 TIGR01659 sex-lethal sex-letha 32.3 1.5E+02 0.0032 19.4 6.0 39 29-67 207-254 (346)
50 PF09902 DUF2129: Uncharacteri 31.3 74 0.0016 15.7 4.7 34 34-67 15-48 (71)
51 PLN03120 nucleic acid binding 29.1 1.5E+02 0.0033 18.7 6.8 48 29-76 18-71 (260)
52 TIGR03421 FeS_CyaY iron donor 28.9 98 0.0021 16.3 2.8 28 40-67 33-60 (102)
53 smart00362 RRM_2 RNA recogniti 28.2 66 0.0014 14.1 5.5 39 29-67 13-58 (72)
54 PF09336 Vps4_C: Vps4 C termin 27.7 66 0.0014 15.2 1.8 13 28-40 50-62 (62)
55 cd00503 Frataxin Frataxin is a 27.3 1.1E+02 0.0023 16.2 2.8 28 40-67 36-63 (105)
56 cd00418 GlxRS_core catalytic c 26.7 1.4E+02 0.003 18.4 3.4 54 5-66 5-58 (230)
57 PRK05347 glutaminyl-tRNA synth 26.6 1.3E+02 0.0028 21.3 3.5 52 5-65 33-85 (554)
58 COG3657 Uncharacterized protei 25.1 55 0.0012 17.2 1.3 22 29-50 47-68 (100)
59 TIGR00440 glnS glutaminyl-tRNA 24.9 1.7E+02 0.0036 20.6 3.8 53 5-65 4-56 (522)
60 KOG0566 Inositol-1,4,5-triphos 24.6 1.2E+02 0.0025 23.2 3.1 23 28-50 298-320 (1080)
61 PF02951 GSH-S_N: Prokaryotic 24.6 66 0.0014 17.5 1.6 13 50-62 107-119 (119)
62 PRK00446 cyaY frataxin-like pr 24.4 97 0.0021 16.4 2.2 28 40-67 35-62 (105)
63 PF06953 ArsD: Arsenical resis 24.1 83 0.0018 17.3 2.0 37 31-67 31-68 (123)
64 TIGR00603 rad25 DNA repair hel 23.9 2.6E+02 0.0056 20.7 4.7 41 27-67 92-132 (732)
65 PF12385 Peptidase_C70: Papain 23.7 1.6E+02 0.0036 17.1 4.0 19 28-46 97-115 (166)
66 PF09926 DUF2158: Uncharacteri 23.5 94 0.002 14.3 2.4 17 39-55 3-19 (53)
67 COG0001 HemL Glutamate-1-semia 23.4 1.3E+02 0.0027 20.6 3.0 30 13-42 207-236 (432)
68 PF11411 DNA_ligase_IV: DNA li 23.3 35 0.00077 14.4 0.3 11 56-66 21-31 (36)
69 PF03625 DUF302: Domain of unk 23.0 81 0.0018 14.6 1.6 19 49-67 18-36 (65)
70 KOG0237 Glycinamide ribonucleo 22.3 1.4E+02 0.0031 21.5 3.1 39 29-67 710-753 (788)
71 PF05172 Nup35_RRM: Nup53/35/4 22.3 1.4E+02 0.003 15.7 4.5 49 27-75 17-81 (100)
72 PF14605 Nup35_RRM_2: Nup53/35 22.1 97 0.0021 14.0 4.8 37 28-64 13-52 (53)
73 PF08798 CRISPR_assoc: CRISPR 21.9 1.4E+02 0.003 17.9 2.8 16 52-67 182-197 (214)
74 TIGR03838 queuosine_YadB gluta 21.6 2.2E+02 0.0047 18.1 3.6 54 5-66 4-57 (272)
75 PRK10597 DNA damage-inducible 21.3 1.3E+02 0.0029 15.2 4.6 38 30-67 24-69 (81)
76 PF06884 DUF1264: Protein of u 21.3 1.2E+02 0.0027 17.8 2.3 19 29-47 100-118 (171)
77 TIGR01642 U2AF_lg U2 snRNP aux 21.1 2.8E+02 0.0061 18.8 5.9 47 30-76 434-493 (509)
78 PF03460 NIR_SIR_ferr: Nitrite 20.8 1.1E+02 0.0025 14.2 4.6 39 26-65 23-63 (69)
79 COG3789 Uncharacterized protei 20.8 1.7E+02 0.0038 16.3 3.6 36 37-72 44-89 (146)
80 PF08544 GHMP_kinases_C: GHMP 20.6 1.2E+02 0.0026 14.5 4.4 38 30-67 37-78 (85)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=1.9e-23 Score=133.78 Aligned_cols=98 Identities=41% Similarity=0.818 Sum_probs=86.6
Q ss_pred CCCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCc-hhH
Q 046501 2 KKRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPK-TLA 80 (100)
Q Consensus 2 ~~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~-~~~ 80 (100)
+++++||+|.++|++||++++.. ..++..+.+++++||+++.+++|..|+|||+|+++++|+|++++..|++|+. ...
T Consensus 23 ~~~~lPPGP~~lPiIGnl~~l~~-~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~ 101 (489)
T KOG0156|consen 23 KRRNLPPGPPPLPIIGNLHQLGS-LPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTAT 101 (489)
T ss_pred CCCCCCcCCCCCCccccHHHcCC-CchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhh
Confidence 34678999999999999999984 2589999999999999999999999999999999999999999999999997 334
Q ss_pred HHHhhcCccceEeCcCCCCC
Q 046501 81 MEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 81 ~~~~~~~~~gl~~~~~g~~W 100 (100)
...+..++.|++++.+|+.|
T Consensus 102 ~~~~~~~~~~i~~a~yG~~W 121 (489)
T KOG0156|consen 102 LKYLSYGGKGIVFAPYGDYW 121 (489)
T ss_pred HHHhcCCCCceEeCCCcHHH
Confidence 46666566899999779998
No 2
>PLN02971 tryptophan N-hydroxylase
Probab=99.74 E-value=1.1e-17 Score=109.00 Aligned_cols=96 Identities=22% Similarity=0.371 Sum_probs=74.3
Q ss_pred CCCCCCCcccceeccccccCCCCChHHHHHHHHHHhC-CeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 4 RRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYG-PIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg-~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
..+||+|.++|++||++++......+..+.+++++|| +++.+++|+.++|+++||++++++|++++..|.+++......
T Consensus 56 ~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~~~ 135 (543)
T PLN02971 56 HPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYAQK 135 (543)
T ss_pred CCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccchh
Confidence 3578888889999999887521234678889999999 799999999999999999999999999888998887544333
Q ss_pred HhhcCcc-ceEeCcCCCCC
Q 046501 83 IFGYNFS-MFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~-gl~~~~~g~~W 100 (100)
.++.+.. +++.++ |+.|
T Consensus 136 ~l~~~~~~~l~~~~-G~~W 153 (543)
T PLN02971 136 ILSNGYKTCVITPF-GEQF 153 (543)
T ss_pred hccCCCCceEecCC-cHHH
Confidence 3332212 355555 9988
No 3
>PLN02655 ent-kaurene oxidase
Probab=99.74 E-value=1.4e-17 Score=106.79 Aligned_cols=93 Identities=31% Similarity=0.505 Sum_probs=74.4
Q ss_pred CCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhc
Q 046501 7 PEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGY 86 (100)
Q Consensus 7 p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~ 86 (100)
||+|+++|++||++++.. ..++..+.+++++||++|++++++.++++|+||++++++|+++...|++++.......+.+
T Consensus 1 ppgp~~lP~iG~l~~~~~-~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~ 79 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKE-KKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTR 79 (466)
T ss_pred CcCCCCCCccccHHHcCC-CchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhc
Confidence 567778999999988863 4578899999999999999999999999999999999999998889988764433333433
Q ss_pred CccceEeCcCCCCC
Q 046501 87 NFSMFGFSPYGSYW 100 (100)
Q Consensus 87 ~~~gl~~~~~g~~W 100 (100)
++.+++++++|+.|
T Consensus 80 ~~~~~~~~~~g~~w 93 (466)
T PLN02655 80 DKSMVATSDYGDFH 93 (466)
T ss_pred CCCceeeCCCcHHH
Confidence 32456666557776
No 4
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.73 E-value=1.9e-17 Score=107.36 Aligned_cols=95 Identities=37% Similarity=0.772 Sum_probs=74.9
Q ss_pred CCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHH
Q 046501 4 RRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEI 83 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 83 (100)
..+||+|.++|++|++..+. .+++..+.+++++||+++++++++.++++++||++++++|+++...|.+++.......
T Consensus 33 ~~~pPgp~~~P~iG~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~~ 110 (517)
T PLN02687 33 RPLPPGPRGWPVLGNLPQLG--PKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAEH 110 (517)
T ss_pred CCCCccCCCCCccccHHhcC--CchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchhh
Confidence 34677887899999998886 4588899999999999999999999999999999999999988888888765443333
Q ss_pred hhcCccceEeCcCCCCC
Q 046501 84 FGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 84 ~~~~~~gl~~~~~g~~W 100 (100)
+...+.+++++.+|+.|
T Consensus 111 ~~~~~~~~l~~~~g~~W 127 (517)
T PLN02687 111 MAYNYQDLVFAPYGPRW 127 (517)
T ss_pred hccCCceeEeCCCCHHH
Confidence 33222355555448887
No 5
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.70 E-value=3.4e-17 Score=104.67 Aligned_cols=97 Identities=24% Similarity=0.346 Sum_probs=76.1
Q ss_pred CCCCCCCCCCcccceeccccccCC---CCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCc
Q 046501 1 KKKRRAPEAGGAWPVTGHLHLLGG---PEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPK 77 (100)
Q Consensus 1 ~~~~~~p~~p~~~p~lg~~~~~~~---~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~ 77 (100)
++++++||+|.++|++||++.+.. ...++.++.+++++||++|++++++.++++++||++++++|+++...|..+..
T Consensus 3 ~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~ 82 (452)
T PLN03141 3 KKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP 82 (452)
T ss_pred CCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc
Confidence 456677888888999999988731 14578899999999999999999999999999999999999988887765532
Q ss_pred hhHHHHhhcCccceEeCcCCCCC
Q 046501 78 TLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 78 ~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
......++ . .++++++ |+.|
T Consensus 83 ~~~~~l~g-~-~~~~~~~-g~~w 102 (452)
T PLN03141 83 KSLTELMG-K-SSILLIN-GSLQ 102 (452)
T ss_pred hhHHHHhC-c-ccccccC-cHHH
Confidence 22223332 2 4788887 8876
No 6
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.70 E-value=1.2e-16 Score=103.36 Aligned_cols=95 Identities=36% Similarity=0.578 Sum_probs=74.9
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
..+.||+|+++|++|+++.+. ..++..+.++.++||+++++++++.++|+++||++++++|+++...|++++......
T Consensus 29 ~~~~pPgp~~~Pl~G~l~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~ 106 (504)
T PLN00110 29 SRKLPPGPRGWPLLGALPLLG--NMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGAT 106 (504)
T ss_pred cCCCcccCCCCCeeechhhcC--CchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchh
Confidence 456688888899999988776 457889999999999999999999999999999999999998888888876543221
Q ss_pred -HhhcCccceEeCcCCCCC
Q 046501 83 -IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 -~~~~~~~gl~~~~~g~~W 100 (100)
.....+.++++.+ |+.|
T Consensus 107 ~~~~~~~~~l~~~~-g~~w 124 (504)
T PLN00110 107 HLAYGAQDMVFADY-GPRW 124 (504)
T ss_pred hhccCCCceeeCCC-CHHH
Confidence 2222224666665 8887
No 7
>PLN02183 ferulate 5-hydroxylase
Probab=99.69 E-value=1.3e-16 Score=103.52 Aligned_cols=96 Identities=27% Similarity=0.523 Sum_probs=74.4
Q ss_pred CCCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHH
Q 046501 2 KKRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAM 81 (100)
Q Consensus 2 ~~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~ 81 (100)
++.++||+|+++|++|++..+. ...+..+.+++++||++|++++++.++|+++||+++++++.++...|++++.....
T Consensus 33 ~~~~~ppgp~~~Pl~G~l~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~ 110 (516)
T PLN02183 33 RRLPYPPGPKGLPIIGNMLMMD--QLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAI 110 (516)
T ss_pred CCCCCCcCCCCCCeeccHHhcC--CcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccch
Confidence 3446688888899999998775 34567889999999999999999999999999999999999888888877653322
Q ss_pred HHh-hcCccceEeCcCCCCC
Q 046501 82 EIF-GYNFSMFGFSPYGSYW 100 (100)
Q Consensus 82 ~~~-~~~~~gl~~~~~g~~W 100 (100)
..+ +..+.+++..+ |+.|
T Consensus 111 ~~~~~~~~~~l~~~~-g~~w 129 (516)
T PLN02183 111 SYLTYDRADMAFAHY-GPFW 129 (516)
T ss_pred hccccCCCceEeCCC-ChHH
Confidence 222 21224666676 8887
No 8
>PLN00168 Cytochrome P450; Provisional
Probab=99.68 E-value=2e-16 Score=102.68 Aligned_cols=96 Identities=24% Similarity=0.442 Sum_probs=74.7
Q ss_pred CCCCCCCCcccceeccccccC-CCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLG-GPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAM 81 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~-~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~ 81 (100)
.+.+||+|+++|++|++..+. ....++..+.+++++||++|++++++.++++++|||+++++++++...|++++.....
T Consensus 33 ~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~~ 112 (519)
T PLN00168 33 GRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVASS 112 (519)
T ss_pred CCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccch
Confidence 456788887899999998654 2235778899999999999999999999999999999999999988889888754433
Q ss_pred HHhhcCccceEe--CcCCCCC
Q 046501 82 EIFGYNFSMFGF--SPYGSYW 100 (100)
Q Consensus 82 ~~~~~~~~gl~~--~~~g~~W 100 (100)
..++.+ .+++. ++ |+.|
T Consensus 113 ~~~~~~-~~~~~~~~~-G~~W 131 (519)
T PLN00168 113 RLLGES-DNTITRSSY-GPVW 131 (519)
T ss_pred hhhccC-CCceeCCCC-CHHH
Confidence 344433 24444 44 8877
No 9
>PLN03018 homomethionine N-hydroxylase
Probab=99.66 E-value=4.8e-16 Score=101.26 Aligned_cols=96 Identities=25% Similarity=0.455 Sum_probs=71.5
Q ss_pred CCCCCCcccceeccccccCCCCChHHHHHHHHHHh-CCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHH
Q 046501 5 RAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKY-GPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEI 83 (100)
Q Consensus 5 ~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~y-g~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 83 (100)
++||+|.++|++||++++.........+.+..++| |+++++++|+.++|+++|||+++++|+++...|++++.......
T Consensus 40 ~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~~~ 119 (534)
T PLN03018 40 QLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIMET 119 (534)
T ss_pred CCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhhhh
Confidence 46888888999999988742111123455566665 79999999999999999999999999998888988875544443
Q ss_pred hhcCccceEeCcCCCCC
Q 046501 84 FGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 84 ~~~~~~gl~~~~~g~~W 100 (100)
++.++.+++++++|+.|
T Consensus 120 l~~~~~~i~~~~~G~~W 136 (534)
T PLN03018 120 IGDNYKSMGTSPYGEQF 136 (534)
T ss_pred hccCCCceEecCCCHHH
Confidence 44333467877558888
No 10
>PTZ00404 cytochrome P450; Provisional
Probab=99.63 E-value=8.6e-16 Score=98.87 Aligned_cols=93 Identities=30% Similarity=0.484 Sum_probs=74.0
Q ss_pred CCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHH
Q 046501 4 RRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEI 83 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 83 (100)
++.+|+|+++|++|++..+. ..++..+.++.++||+++++++++.++|+++||+++++++.++...|.+++.......
T Consensus 28 ~~~~pgp~~~p~~G~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~ 105 (482)
T PTZ00404 28 KNELKGPIPIPILGNLHQLG--NLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIKH 105 (482)
T ss_pred CCCCCCCCCCCeeccHhhhc--ccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceeee
Confidence 44566777899999998876 4688899999999999999999999999999999999999887777776654432211
Q ss_pred hhcCccceEeCcCCCCC
Q 046501 84 FGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 84 ~~~~~~gl~~~~~g~~W 100 (100)
... +.|+++++ |+.|
T Consensus 106 ~~~-~~~l~~~~-g~~w 120 (482)
T PTZ00404 106 GTF-YHGIVTSS-GEYW 120 (482)
T ss_pred ecc-CCceeccC-hHHH
Confidence 112 36888887 8887
No 11
>PLN02500 cytochrome P450 90B1
Probab=99.63 E-value=6e-16 Score=99.83 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=71.9
Q ss_pred CCCCCCCcccceeccccccC---CCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhH
Q 046501 4 RRAPEAGGAWPVTGHLHLLG---GPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLA 80 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~---~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~ 80 (100)
.+.||+|+++|++||+..+. ....+...+.+++++||+++.+++++.++|+++||++++++|+++...|.++.....
T Consensus 37 ~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~~~~ 116 (490)
T PLN02500 37 FNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYPRSI 116 (490)
T ss_pred CCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCchHH
Confidence 45688888899999976432 113567788999999999999999999999999999999999988777765432222
Q ss_pred HHHhhcCccceEeCcCCCCC
Q 046501 81 MEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 81 ~~~~~~~~~gl~~~~~g~~W 100 (100)
...++ . .++++++ |+.|
T Consensus 117 ~~~~g-~-~~~~~~~-g~~w 133 (490)
T PLN02500 117 GGILG-K-WSMLVLV-GDMH 133 (490)
T ss_pred HHHhC-c-ccccccC-CHHH
Confidence 23333 2 3788887 9887
No 12
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=98.09 Aligned_cols=94 Identities=35% Similarity=0.561 Sum_probs=72.7
Q ss_pred CCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHH
Q 046501 4 RRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEI 83 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 83 (100)
.+.||+|.++|++||+..+. ..+...+.+++++||+++++++++.++++++||+++++++.++...|++++.......
T Consensus 31 ~~~ppgp~~~pl~G~~~~~~--~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~~~~ 108 (514)
T PLN03112 31 LRLPPGPPRWPIVGNLLQLG--PLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAAVH 108 (514)
T ss_pred CCCccCCCCCCeeeeHHhcC--CchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCccccee
Confidence 35677888899999998876 5678899999999999999999999999999999999999988888887765422211
Q ss_pred -hhcCccceEeCcCCCCC
Q 046501 84 -FGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 84 -~~~~~~gl~~~~~g~~W 100 (100)
....+.+++..+ |+.|
T Consensus 109 ~~~g~~~~~~~~~-g~~w 125 (514)
T PLN03112 109 LAYGCGDVALAPL-GPHW 125 (514)
T ss_pred eccCCCceEeCCC-CHHH
Confidence 111223444455 8877
No 13
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.63 E-value=2.4e-15 Score=97.15 Aligned_cols=75 Identities=39% Similarity=0.596 Sum_probs=64.4
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCch
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKT 78 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~ 78 (100)
..+.||+|.++|++||+..+.. ..+...+.+++++||+++++++++.++++++|||++++++.++...|..++..
T Consensus 26 ~~~~pPgp~~~P~iG~~~~~~~-~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~ 100 (499)
T PLN03234 26 SLRLPPGPKGLPIIGNLHQMEK-FNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLL 100 (499)
T ss_pred CCCCCcCCCCCCeeccHHhcCC-CCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCc
Confidence 4466778878999999988752 35778899999999999999999999999999999999999888888877654
No 14
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.61 E-value=4.9e-15 Score=95.83 Aligned_cols=96 Identities=36% Similarity=0.573 Sum_probs=72.6
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
+.+.||+|+..|++|++..+.. ...+..+.+++++||+++++++++.++|+++|||++++++.++...|.+++......
T Consensus 28 ~~~~pPgp~~~p~~g~l~~~~~-~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~ 106 (503)
T PLN02394 28 KLKLPPGPAAVPIFGNWLQVGD-DLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFD 106 (503)
T ss_pred cCCCCcCCCCCCeeeeHHhcCC-CchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchHh
Confidence 3456778888999999988762 235678999999999999999999999999999999999998877787665433323
Q ss_pred Hh-hcCccceEeCcCCCCC
Q 046501 83 IF-GYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~-~~~~~gl~~~~~g~~W 100 (100)
.+ +.+..+++..+ |+.|
T Consensus 107 ~~~g~~~~~l~~~~-g~~w 124 (503)
T PLN02394 107 IFTGKGQDMVFTVY-GDHW 124 (503)
T ss_pred HhccCCCceeecCC-CHHH
Confidence 33 22223455555 8877
No 15
>PLN02774 brassinosteroid-6-oxidase
Probab=99.61 E-value=1e-15 Score=98.20 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=71.7
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
+++.||+|.++|++||+..+. .++...+.++.++||+++++++++.++++++||+++++++.++...|..+.......
T Consensus 29 r~~~ppgp~~~P~~G~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 106 (463)
T PLN02774 29 KKGLPPGTMGWPLFGETTEFL--KQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLD 106 (463)
T ss_pred CCCCCCCCCCCCchhhHHHHH--HhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHH
Confidence 456677777899999988775 456678899999999999999999999999999999999988777764432222233
Q ss_pred HhhcCccceEeCcCCCCC
Q 046501 83 IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~gl~~~~~g~~W 100 (100)
.++ . .+++.++ |+.|
T Consensus 107 ~lg-~-~~~~~~~-g~~w 121 (463)
T PLN02774 107 ILG-T-CNIAAVH-GSTH 121 (463)
T ss_pred HhC-c-cchhhcC-CHHH
Confidence 333 2 3777776 8877
No 16
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.60 E-value=1e-15 Score=98.46 Aligned_cols=94 Identities=17% Similarity=0.253 Sum_probs=74.4
Q ss_pred CCCCCCCcccceeccccccC---CCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhH
Q 046501 4 RRAPEAGGAWPVTGHLHLLG---GPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLA 80 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~---~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~ 80 (100)
..+||+|.++|++||++++. ...++...+.+++++||+++++++++.++++++||++++++++++...|..+.....
T Consensus 29 ~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~ 108 (472)
T PLN02987 29 MRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPGSI 108 (472)
T ss_pred CCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcHHH
Confidence 34677888899999998763 114577888999999999999999999999999999999999988888866543333
Q ss_pred HHHhhcCccceEeCcCCCCC
Q 046501 81 MEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 81 ~~~~~~~~~gl~~~~~g~~W 100 (100)
...++ . .|+++++ |+.|
T Consensus 109 ~~~lg-~-~~l~~~~-g~~w 125 (472)
T PLN02987 109 SNLLG-K-HSLLLMK-GNLH 125 (472)
T ss_pred HHHhC-c-ccccccC-cHHH
Confidence 34443 2 5899997 8887
No 17
>PLN02966 cytochrome P450 83A1
Probab=99.60 E-value=5.2e-15 Score=95.77 Aligned_cols=74 Identities=39% Similarity=0.640 Sum_probs=63.5
Q ss_pred CCCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 2 KKRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 2 ~~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
+..++||+|.++|++||+..+.. .++...+.+++++||+++.+++++.++|+++||+++++++.++...|.+++
T Consensus 26 ~~~~~ppgp~~~p~~G~l~~l~~-~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~ 99 (502)
T PLN02966 26 KRYKLPPGPSPLPVIGNLLQLQK-LNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRP 99 (502)
T ss_pred CCCCCCcCCCCCCeeccHHhcCC-CChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCC
Confidence 34456888878999999988752 467889999999999999999999999999999999999998777777654
No 18
>PLN02290 cytokinin trans-hydroxylase
Probab=99.59 E-value=2.1e-15 Score=97.82 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=67.5
Q ss_pred CCCCCCCcccceeccccccCC-----------------CCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHH
Q 046501 4 RRAPEAGGAWPVTGHLHLLGG-----------------PEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLT 66 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~~-----------------~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~ 66 (100)
+..||+|+++|++||++++.. .......+.++.++||+++.+++++.++++++||++++++++
T Consensus 41 ~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~ 120 (516)
T PLN02290 41 RQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLT 120 (516)
T ss_pred HcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHh
Confidence 344777778999999987641 012234568899999999999999999999999999999998
Q ss_pred HCCcccccCCchhHHHHhhcCccceEeCcCCCCC
Q 046501 67 THDKVFASRPKTLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
++ ..+.+++...........+.|+++++ |+.|
T Consensus 121 ~~-~~~~~r~~~~~~~~~~~~g~~l~~~~-g~~W 152 (516)
T PLN02290 121 KY-NTVTGKSWLQQQGTKHFIGRGLLMAN-GADW 152 (516)
T ss_pred cC-CCCCCCcchhhhHHHHHhcCCccccC-chHH
Confidence 76 34555543221111111125888887 9988
No 19
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.58 E-value=6.4e-16 Score=97.55 Aligned_cols=93 Identities=33% Similarity=0.501 Sum_probs=72.3
Q ss_pred CCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHH--h
Q 046501 7 PEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEI--F 84 (100)
Q Consensus 7 p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~--~ 84 (100)
||+|.++|++||+..+.....++..+.+++++||+++++++++.++++|+||+++++++.++...++.++....... .
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 67788899999999876324678899999999999999999999999999999999999888777776543322221 1
Q ss_pred hcCccceEeCcCCCCC
Q 046501 85 GYNFSMFGFSPYGSYW 100 (100)
Q Consensus 85 ~~~~~gl~~~~~g~~W 100 (100)
...+.++++++ |+.|
T Consensus 81 ~~~~~~l~~~~-~~~~ 95 (463)
T PF00067_consen 81 PFGGKGLFFSD-GERW 95 (463)
T ss_dssp HHTTTSSTTSS-HHHH
T ss_pred ccccccccccc-cccc
Confidence 12236888776 6654
No 20
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.56 E-value=9.5e-15 Score=93.81 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=69.6
Q ss_pred CCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHh
Q 046501 5 RAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIF 84 (100)
Q Consensus 5 ~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~ 84 (100)
..||+|.++|++|++.++.. .+++..+.+++++||+++++++++.++++++||+++++++.++...|.... .......
T Consensus 35 ~~Ppgp~~~P~iG~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~-~~~~~~~ 112 (463)
T PLN02196 35 PLPPGTMGWPYVGETFQLYS-QDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPTF-PASKERM 112 (463)
T ss_pred CCCCCCCCCCccchHHHHHh-cCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcccccC-chHHHHH
Confidence 34666667999999887642 568889999999999999999999999999999999999988777663221 1122222
Q ss_pred hcCccceEeCcCCCCC
Q 046501 85 GYNFSMFGFSPYGSYW 100 (100)
Q Consensus 85 ~~~~~gl~~~~~g~~W 100 (100)
. +..++++++ |+.|
T Consensus 113 ~-g~~~l~~~~-g~~w 126 (463)
T PLN02196 113 L-GKQAIFFHQ-GDYH 126 (463)
T ss_pred c-CcccccccC-cHHH
Confidence 2 224788887 8887
No 21
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.44 E-value=4.6e-13 Score=86.38 Aligned_cols=93 Identities=22% Similarity=0.334 Sum_probs=67.6
Q ss_pred CCCCCCCcccceeccccccC---CCCChHHHHHHHHHHhCC--eEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCch
Q 046501 4 RRAPEAGGAWPVTGHLHLLG---GPEPPHRVLGAMADKYGP--IFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKT 78 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~---~~~~~~~~~~~~~~~yg~--~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~ 78 (100)
.++||+|.++|++|++.++. ...+++.++.++.++||+ ++++++++.++++++||+++++++.++ +.|.++...
T Consensus 41 ~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~~~ 119 (490)
T PLN02302 41 PPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGWPE 119 (490)
T ss_pred CCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCCch
Confidence 45688888899999988753 124678889999999997 789999999999999999999999754 556544322
Q ss_pred hHHHHhhcCccceEeCcCCCCC
Q 046501 79 LAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 79 ~~~~~~~~~~~gl~~~~~g~~W 100 (100)
.....++ . .+++..+ |+.|
T Consensus 120 ~~~~~~g-~-~~~~~~~-g~~w 138 (490)
T PLN02302 120 STVELIG-R-KSFVGIT-GEEH 138 (490)
T ss_pred hHHHHhc-c-ccccccC-cHHH
Confidence 2222222 2 3455566 7776
No 22
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.41 E-value=4.2e-13 Score=87.03 Aligned_cols=92 Identities=25% Similarity=0.510 Sum_probs=73.2
Q ss_pred CCCCCCcccceeccccccCCC-CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchh-HH-
Q 046501 5 RAPEAGGAWPVTGHLHLLGGP-EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTL-AM- 81 (100)
Q Consensus 5 ~~p~~p~~~p~lg~~~~~~~~-~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~-~~- 81 (100)
..|++|.++|++|++..+... ..+..++.++..+||+++..++++.++++++||+.+++||.++...+...+... ..
T Consensus 35 ~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~~~ 114 (497)
T KOG0157|consen 35 KLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPESLK 114 (497)
T ss_pred ccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHHHH
Confidence 457788889999999988632 457788899999999999999999999999999999999976666554443333 22
Q ss_pred HHhhcCccceEeCcCCCCC
Q 046501 82 EIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 82 ~~~~~~~~gl~~~~~g~~W 100 (100)
+.++ +|+++++ |+.|
T Consensus 115 ~~lG---~gll~~~-g~~W 129 (497)
T KOG0157|consen 115 PWLG---DGLLFSD-GEKW 129 (497)
T ss_pred HHhc---CccccCC-chHH
Confidence 3333 6999999 9988
No 23
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.40 E-value=4.7e-13 Score=86.29 Aligned_cols=95 Identities=28% Similarity=0.301 Sum_probs=68.2
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCC--chhH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRP--KTLA 80 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~--~~~~ 80 (100)
+++.|.++ ++|++||+..+...+.......+...++|++++++.+.+|.++|+|||++++|+++++++|.++. ....
T Consensus 30 rrGi~~~~-p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d 108 (499)
T KOG0158|consen 30 RRGIPGPK-PLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGD 108 (499)
T ss_pred cCCCCCCC-CCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCC
Confidence 45666655 58999999987632333444444444449999999999999999999999999999999999943 2211
Q ss_pred HHHhhcCccceEeCcCCCCC
Q 046501 81 MEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 81 ~~~~~~~~~gl~~~~~g~~W 100 (100)
... .....+++.++ |+.|
T Consensus 109 ~~~-~l~~~~Lf~~~-g~~W 126 (499)
T KOG0158|consen 109 PED-PLSALNLFFLR-GERW 126 (499)
T ss_pred CCC-cccccCchhcc-CchH
Confidence 111 11124788888 9988
No 24
>PLN02936 epsilon-ring hydroxylase
Probab=99.36 E-value=2e-12 Score=83.75 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=73.1
Q ss_pred CCCCCCCCcccceecccccc-C--CCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchh
Q 046501 3 KRRAPEAGGAWPVTGHLHLL-G--GPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTL 79 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~-~--~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~ 79 (100)
..++.++..++|++|+.... . .....+..+.+++++||+++++++++.++++++|||++++|+.+....|.++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~ 89 (489)
T PLN02936 10 LNRLWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAE 89 (489)
T ss_pred hhccCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhh
Confidence 35678888899999987643 2 11457889999999999999999999999999999999999988777887654322
Q ss_pred HHHHhhcCccceEeCcCCCCC
Q 046501 80 AMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 80 ~~~~~~~~~~gl~~~~~g~~W 100 (100)
....+. + .++++++ |+.|
T Consensus 90 ~~~~~~-~-~~i~~~~-g~~w 107 (489)
T PLN02936 90 VSEFLF-G-SGFAIAE-GELW 107 (489)
T ss_pred hhHHHh-c-CccccCC-chHH
Confidence 222222 2 5888887 8887
No 25
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.35 E-value=3.4e-12 Score=82.88 Aligned_cols=95 Identities=12% Similarity=0.005 Sum_probs=65.9
Q ss_pred CCCCCCCCCcccceeccccccC-CCCChHHHHHHHHHHhCCeEE---EEeCCccEEEEcCHHHHHHHHHHCCcccccCCc
Q 046501 2 KKRRAPEAGGAWPVTGHLHLLG-GPEPPHRVLGAMADKYGPIFT---IKMGVNRALVVSNWEMAKECLTTHDKVFASRPK 77 (100)
Q Consensus 2 ~~~~~p~~p~~~p~lg~~~~~~-~~~~~~~~~~~~~~~yg~~~~---~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~ 77 (100)
++++.|. |.++|++||+..+. ......+.+.+...+|+..+. .++++.++++++|||++++||+++...|.++..
T Consensus 29 ~~~~~p~-p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~ 107 (500)
T PLN02169 29 KPHGQPI-LKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPE 107 (500)
T ss_pred ccCCCCC-CCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHH
Confidence 3445555 45799999997664 212344555565566886544 677899999999999999999988777776543
Q ss_pred hhHHHHhhcCccceEeCcCCCCC
Q 046501 78 TLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 78 ~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
..... ...++|+++++ |+.|
T Consensus 108 ~~~~~--~~~g~gl~~~~-g~~W 127 (500)
T PLN02169 108 FKKIF--DVLGEGILTVD-FELW 127 (500)
T ss_pred HHHHH--HhhcCcccccC-cHHH
Confidence 22211 11227999998 9988
No 26
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.28 E-value=1.2e-11 Score=80.55 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=62.3
Q ss_pred CCCCcccceeccccccCCCCChHHHHHHHHHHh---CCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchh-HHH
Q 046501 7 PEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKY---GPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTL-AME 82 (100)
Q Consensus 7 p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~y---g~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~-~~~ 82 (100)
+|+|+++|++||+..+.. . ...+.++.++| |+++.+++++.++++++||+++++|+.++...|.++.... ...
T Consensus 32 ~pgp~~~p~~G~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 108 (516)
T PLN03195 32 RKGPKSWPIIGAALEQLK--N-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYME 108 (516)
T ss_pred cCCCCCCCeecchHHHHh--c-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHH
Confidence 456667999999876541 1 23456667777 7999999999999999999999999987656665543221 112
Q ss_pred HhhcCccceEeCcCCCCC
Q 046501 83 IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~gl~~~~~g~~W 100 (100)
.+. + .|+++++ |+.|
T Consensus 109 ~~~-g-~~l~~~~-g~~w 123 (516)
T PLN03195 109 VLL-G-DGIFNVD-GELW 123 (516)
T ss_pred HHh-c-CeeeccC-cHHH
Confidence 222 2 5888876 8877
No 27
>PLN02738 carotene beta-ring hydroxylase
Probab=99.18 E-value=8.3e-11 Score=78.38 Aligned_cols=82 Identities=23% Similarity=0.333 Sum_probs=61.8
Q ss_pred eeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhcCccceEeC
Q 046501 15 VTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGYNFSMFGFS 94 (100)
Q Consensus 15 ~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~gl~~~ 94 (100)
.+|++..+.+ ...+..+.+++++||+++++++++.++++|+||+.+++|+.++...|.++......... .+ .|++++
T Consensus 141 ~~G~l~~i~~-g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~-~g-~~l~~~ 217 (633)
T PLN02738 141 AKGSISAVRG-EAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFV-MG-KGLIPA 217 (633)
T ss_pred ccCcHHHhcC-chHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhc-cC-CceecC
Confidence 3556555543 45788999999999999999999999999999999999998877677665332222222 22 588888
Q ss_pred cCCCCC
Q 046501 95 PYGSYW 100 (100)
Q Consensus 95 ~~g~~W 100 (100)
+ |+.|
T Consensus 218 d-ge~w 222 (633)
T PLN02738 218 D-GEIW 222 (633)
T ss_pred C-cHHH
Confidence 7 8877
No 28
>PLN02648 allene oxide synthase
Probab=99.09 E-value=4.5e-11 Score=77.42 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=64.5
Q ss_pred CCCCCCcccceeccccccC---CCCChHHHHHHHHHHhCC-eEEEEeCCccE-------EEEcCHHHHHHHHHH----CC
Q 046501 5 RAPEAGGAWPVTGHLHLLG---GPEPPHRVLGAMADKYGP-IFTIKMGVNRA-------LVVSNWEMAKECLTT----HD 69 (100)
Q Consensus 5 ~~p~~p~~~p~lg~~~~~~---~~~~~~~~~~~~~~~yg~-~~~~~~~~~~~-------v~i~~p~~~~~il~~----~~ 69 (100)
..||++.++|++|++.++. ...++..++.+..++||+ ||++.+++.|+ |+++|||+++.+|.. +.
T Consensus 17 ~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~~ 96 (480)
T PLN02648 17 REIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDKR 96 (480)
T ss_pred CCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhcccc
Confidence 3477777899999997543 114567999999999998 99999998766 999999999999974 33
Q ss_pred cccccCCchhHHHHhhcCcc---ceEeCcCCCCC
Q 046501 70 KVFASRPKTLAMEIFGYNFS---MFGFSPYGSYW 100 (100)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~---gl~~~~~g~~W 100 (100)
..+.... ......++ . . +++..+ |+.|
T Consensus 97 ~~~~~~~-~~~~~l~G-~-~~~~s~~~~~-g~~H 126 (480)
T PLN02648 97 DVFTGTY-MPSTAFTG-G-YRVLSYLDPS-EPKH 126 (480)
T ss_pred ccceeee-ccCccccC-C-ceeeeecCCC-CchH
Confidence 3343322 12223332 2 3 566666 7766
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.93 E-value=2e-09 Score=69.54 Aligned_cols=92 Identities=22% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCCCcccceeccccccC--CCCChHHHHHHHHHHhCCeEEEE-eCCccEEEEcCHHHHHHHHHHCCcccccCC-chh---
Q 046501 7 PEAGGAWPVTGHLHLLG--GPEPPHRVLGAMADKYGPIFTIK-MGVNRALVVSNWEMAKECLTTHDKVFASRP-KTL--- 79 (100)
Q Consensus 7 p~~p~~~p~lg~~~~~~--~~~~~~~~~~~~~~~yg~~~~~~-~~~~~~v~i~~p~~~~~il~~~~~~~~~~~-~~~--- 79 (100)
.|+|+.+|++|.+..+. +.+..++.....+++||+||+.. +|+...|++.||+.++.++...+ .+.-|+ ...
T Consensus 52 IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~~~~w~ 130 (519)
T KOG0159|consen 52 IPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLLIEPWV 130 (519)
T ss_pred cCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcccccchhh
Confidence 56677799999887543 23568899999999999999999 78889999999999999997655 335553 111
Q ss_pred HHHHhhcCccceEeCcCCCCC
Q 046501 80 AMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 80 ~~~~~~~~~~gl~~~~~g~~W 100 (100)
..+-......|++..+ |+.|
T Consensus 131 ~~rd~~~~~~Gl~~~~-G~~W 150 (519)
T KOG0159|consen 131 AYRDFRGGVCGLFLLE-GPEW 150 (519)
T ss_pred hhHHhhccCCCcccCC-CHHH
Confidence 1122233447999999 9998
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=1.9e-08 Score=64.15 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=55.8
Q ss_pred CCCCCc-ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCccc
Q 046501 6 APEAGG-AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVF 72 (100)
Q Consensus 6 ~p~~p~-~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~ 72 (100)
.||--. ..|++|+...+. +++..++.+.++|||+||.+.++++.+.++.+|+....++......+
T Consensus 32 ~PPli~gwiP~lG~a~~fg--k~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~l 97 (486)
T KOG0684|consen 32 EPPLIKGWIPWLGSALAFG--KDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADL 97 (486)
T ss_pred CCcccccCcchhhHHHHhc--cCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCccccc
Confidence 344433 469999999999 78999999999999999999999999999999999999997653333
No 31
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=98.20 E-value=6e-06 Score=54.24 Aligned_cols=81 Identities=10% Similarity=-0.044 Sum_probs=55.3
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhC-CeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCch-hHHHHhhcCccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYG-PIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKT-LAMEIFGYNFSM 90 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg-~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~-~~~~~~~~~~~g 90 (100)
.++.|+..... .+..+.+..+.++++ .++.+..++. ++++|||++++++.++...|.+.... .....+ .+ +|
T Consensus 49 ~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~-~g-~g 122 (502)
T PLN02426 49 AYLTASWAKDF--DNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDL-LG-RG 122 (502)
T ss_pred CCccHHHHHhc--ccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHh-cC-Cc
Confidence 56777776654 345666767788887 5667765544 89999999999998877778654322 122111 12 69
Q ss_pred eEeCcCCCCC
Q 046501 91 FGFSPYGSYW 100 (100)
Q Consensus 91 l~~~~~g~~W 100 (100)
+++++ |+.|
T Consensus 123 i~~~~-g~~w 131 (502)
T PLN02426 123 IFNVD-GDSW 131 (502)
T ss_pred eeecC-cHHH
Confidence 99998 8887
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.34 E-value=0.82 Score=29.86 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCeEEEEeCCc--cEEEEcCHHHHHHHHHHCC
Q 046501 29 HRVLGAMADKYGPIFTIKMGVN--RALVVSNWEMAKECLTTHD 69 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~~--~~v~i~~p~~~~~il~~~~ 69 (100)
........+.|+.++.+...+. .++++++++.+++++..+.
T Consensus 25 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~ 67 (411)
T COG2124 25 RFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR 67 (411)
T ss_pred hhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc
Confidence 3455567778888777765443 3899999999999997653
No 33
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=79.33 E-value=7.6 Score=21.11 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHH
Q 046501 27 PPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLT 66 (100)
Q Consensus 27 ~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~ 66 (100)
+....+.+|.++||.+-... +.-.+...|++.+++++.
T Consensus 75 ~v~~~i~~w~~~~g~v~l~~--~~~~l~~~d~~~l~~l~~ 112 (129)
T PF13625_consen 75 NVEQSIEDWARRYGRVRLYK--GAYLLECDDPELLDELLA 112 (129)
T ss_pred HHHHHHHHHHHhcCCEEEec--CeEEEEECCHHHHHHHHh
Confidence 45678889999999876532 456777899999999984
No 34
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=54.63 E-value=33 Score=18.48 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCeEEEEeCC------ccEEEEcCHHHHHHHHHHC-CcccccC
Q 046501 29 HRVLGAMADKYGPIFTIKMGV------NRALVVSNWEMAKECLTTH-DKVFASR 75 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~------~~~v~i~~p~~~~~il~~~-~~~~~~~ 75 (100)
.+-+.++..+||.|..+.+|. ..+||-.|-..++..+..- ...+.++
T Consensus 32 seemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 32 SEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred HHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 456677888999999888764 3567777877787777542 3333444
No 35
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=43.68 E-value=59 Score=18.17 Aligned_cols=54 Identities=11% Similarity=-0.017 Sum_probs=27.9
Q ss_pred CCCCCCCcccceeccccccCCCCChHHHHHHHHHH-hCCeEEEEeCCccEEEEcCHHHHHHHH
Q 046501 4 RRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADK-YGPIFTIKMGVNRALVVSNWEMAKECL 65 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~-yg~~~~~~~~~~~~v~i~~p~~~~~il 65 (100)
+++|.|....|+++++... .+.+...+ .+.+..+.....=+++..+.+.+++++
T Consensus 52 ~GlpqG~~lS~~L~~~~l~--------~~d~~i~~~~~~~~~~RY~DD~~i~~~~~~~~~~~~ 106 (158)
T cd01646 52 NGLPIGPLTSRFLANIYLN--------DVDHELKSKLKGVDYVRYVDDIRIFADSKEEAEEIL 106 (158)
T ss_pred ceEccCcchHHHHHHHHHH--------HHHHHHHhccCCceEEEecCcEEEEcCCHHHHHHHH
Confidence 4556666556777654321 22222222 455555555555555666666554444
No 36
>PRK02302 hypothetical protein; Provisional
Probab=43.44 E-value=48 Score=17.13 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=25.3
Q ss_pred HHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 34 AMADKYGPIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 34 ~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
+-.++||++..+.=-..-+++-.|.+.+++++.+
T Consensus 21 r~LrkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~k 54 (89)
T PRK02302 21 RKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEE 54 (89)
T ss_pred HHHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 4457899998887666666766788888877754
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=42.94 E-value=61 Score=18.09 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH
Q 046501 28 PHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~ 67 (100)
..+.+.++.++||.|..+.+. +.-+|-..+++.++.++..
T Consensus 47 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 345677778899998766542 2356667899999999864
No 38
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=41.49 E-value=52 Score=17.61 Aligned_cols=28 Identities=11% Similarity=0.284 Sum_probs=24.8
Q ss_pred CCeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 40 GPIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 40 g~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
|.|+.+.+.....+||+-.+.+++|=..
T Consensus 36 g~VlTl~f~ngs~iiINkQ~P~~qiWlA 63 (106)
T COG1965 36 GGVLTLTFDNGSQIIINKQEPLQQIWLA 63 (106)
T ss_pred CCEEEEEECCCcEEEEeCCChHHHHHhh
Confidence 6789999999999999999999999765
No 39
>PRK02886 hypothetical protein; Provisional
Probab=40.96 E-value=53 Score=16.90 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 34 AMADKYGPIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 34 ~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
+-.++||++..+.=-..-+++-.|.+.+++++.+
T Consensus 19 r~LrkyG~I~Y~Skr~kYvvlYvn~~~~e~~~~k 52 (87)
T PRK02886 19 KQLRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNK 52 (87)
T ss_pred HHHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 4457899998887666666766788888877754
No 40
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=39.32 E-value=1e+02 Score=19.63 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCeEEEEeCCc---------cEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 29 HRVLGAMADKYGPIFTIKMGVN---------RALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~~---------~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.+.+.++..+||+|..+.+... -+|...+++.+..++.. ++..+.+|
T Consensus 283 e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr 339 (352)
T TIGR01661 283 ETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNR 339 (352)
T ss_pred HHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4566677789999987776432 26677888888777754 55555554
No 41
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=37.80 E-value=93 Score=18.75 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=34.9
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeE-EEE-eCCccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIF-TIK-MGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~-~~~-~~~~~~v~i~~p~~~~~il~~ 67 (100)
.|+-|.+..-....+|.+.+..|.-+...-. +.. +.-..++|--||+.|+...+.
T Consensus 90 CPFTGKVF~DNt~~nPQDAIYDWvSkCPeN~ER~~G~rVKRF~VSeDPevIk~Yi~~ 146 (238)
T PF10915_consen 90 CPFTGKVFGDNTHPNPQDAIYDWVSKCPENTERQGGVRVKRFFVSEDPEVIKEYIVP 146 (238)
T ss_pred cCCcCccccCCCCCChHHHHHHHHhhCCccchhccCeEEEEEeecCCHHHHHHhccC
Confidence 3677766554434678888888887776322 221 111356667799999988744
No 42
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=37.74 E-value=62 Score=16.93 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=24.2
Q ss_pred CCeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 40 GPIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 40 g~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
+.|..+.+.....+||+-...++||=..
T Consensus 35 ~gVLti~~~~~~~~VINkQ~p~~QIWls 62 (97)
T TIGR03422 35 SGVLTLELPSVGTYVINKQPPNKQIWLS 62 (97)
T ss_pred CCEEEEEECCCCEEEEeCCChhhHHhee
Confidence 5788898888889999999999999754
No 43
>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=37.45 E-value=34 Score=20.76 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=22.2
Q ss_pred CeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 41 PIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 41 ~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
.+.-+..|...+++..|++.++.++..
T Consensus 138 ~l~plfvgnh~ill~~d~~kik~~lri 164 (245)
T KOG4241|consen 138 SLNPLFVGNHAILLAKDISKIKSILRI 164 (245)
T ss_pred hhhhheeccceEEEcCChHHHHHHHHH
Confidence 455566788899999999999999854
No 44
>PF13010 pRN1_helical: Primase helical domain; PDB: 1RO0_A 1RNI_A 1RO2_A 3M1M_A.
Probab=35.68 E-value=22 Score=19.53 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=14.5
Q ss_pred EcCHHHHHHHHHHCCcccccCCchh
Q 046501 55 VSNWEMAKECLTTHDKVFASRPKTL 79 (100)
Q Consensus 55 i~~p~~~~~il~~~~~~~~~~~~~~ 79 (100)
++|++.+.++|-+++..|......+
T Consensus 93 vtd~d~l~qlLP~DSKvf~pKWdkY 117 (135)
T PF13010_consen 93 VTDLDVLLQLLPEDSKVFAPKWDKY 117 (135)
T ss_dssp ---HHHHHHHS-TT-TTTS-HHHHH
T ss_pred CCCHHHHHHHCcccccccccchhHH
Confidence 4899999999988888877544333
No 45
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.63 E-value=68 Score=16.58 Aligned_cols=35 Identities=9% Similarity=0.144 Sum_probs=25.7
Q ss_pred HHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 33 GAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 33 ~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
.+-.++||++....--..-++.-++-+.+.+++.+
T Consensus 19 aRqLrkfG~v~Y~Skk~kY~vlYvn~~~ve~~~~k 53 (90)
T COG4471 19 ARQLRKFGDVHYVSKKSKYVVLYVNEQDVEQIVEK 53 (90)
T ss_pred hHHHHhcCCEEEEecceeEEEEEECHHHHHHHHHH
Confidence 34567899998877555566666788888888865
No 46
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=35.28 E-value=54 Score=18.95 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCeEEEEeCCccEEEE-cCHHHHHHHHHHCCcccccCC
Q 046501 29 HRVLGAMADKYGPIFTIKMGVNRALVV-SNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~~~~v~i-~~p~~~~~il~~~~~~~~~~~ 76 (100)
.-....+.++|.++.+-..++..+|++ .+.+.+.+-+..+..+|.+..
T Consensus 71 vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ 119 (161)
T COG3265 71 VIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPAS 119 (161)
T ss_pred EEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHH
Confidence 344556777888877777777666666 488888888887777886643
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=35.24 E-value=47 Score=14.65 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=22.8
Q ss_pred HHHHHHhCCeEEEEeCC----ccEEEEcCHHHHHHHHH
Q 046501 33 GAMADKYGPIFTIKMGV----NRALVVSNWEMAKECLT 66 (100)
Q Consensus 33 ~~~~~~yg~~~~~~~~~----~~~v~i~~p~~~~~il~ 66 (100)
.+...+||.|-.+.+.. .-+|-..+.+.++.++.
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~ 39 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE 39 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 45667899988777543 23455678888888775
No 48
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=34.64 E-value=59 Score=22.90 Aligned_cols=26 Identities=12% Similarity=0.432 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHhCCeEEEEeCCccE
Q 046501 27 PPHRVLGAMADKYGPIFTIKMGVNRA 52 (100)
Q Consensus 27 ~~~~~~~~~~~~yg~~~~~~~~~~~~ 52 (100)
.....+.++.++||+++.+.+....-
T Consensus 294 af~kHF~~L~~~YG~v~vvNLl~tK~ 319 (570)
T COG5329 294 AFDKHFDKLREKYGDVYVVNLLKTKG 319 (570)
T ss_pred HHHHHHHHHHHHcCCEEEEEcccCCc
Confidence 35678899999999999998766543
No 49
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=32.31 E-value=1.5e+02 Score=19.44 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~ 67 (100)
.+.+.++..+||.|..+.+.. .-+|...+.+.+++++..
T Consensus 207 ee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 207 DDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred HHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 356777889999987766532 236667888888888764
No 50
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=31.33 E-value=74 Score=15.66 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=25.2
Q ss_pred HHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 34 AMADKYGPIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 34 ~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
+-.++||++..+.=-..-+++-.|.+.+.++..+
T Consensus 15 r~L~kfG~i~Y~Skk~kYvvlYvn~~~~e~~~~k 48 (71)
T PF09902_consen 15 RQLRKFGDIHYVSKKMKYVVLYVNEEDVEEIIEK 48 (71)
T ss_pred HhHhhcccEEEEECCccEEEEEECHHHHHHHHHH
Confidence 4457899998887666666777788888877754
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=29.12 E-value=1.5e+02 Score=18.67 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCeEEEEeC------CccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 29 HRVLGAMADKYGPIFTIKMG------VNRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~------~~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
.+-+.++...||.|-.+.+. +.-+|...+++.++..+.-+...+.++.
T Consensus 18 E~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 18 ERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred HHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 34566777889998877762 3456677899999988876666555543
No 52
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=28.88 E-value=98 Score=16.32 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 40 GPIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 40 g~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
|.|..+.+.....+||+-.+.++||=..
T Consensus 33 ~gVLti~f~~~~~~VINkQ~p~~QIWla 60 (102)
T TIGR03421 33 GGVLTLTFENGSQIIINKQEPLHQIWLA 60 (102)
T ss_pred CCEEEEEECCCCEEEEeCCchhhhheee
Confidence 5788888888889999999999998754
No 53
>smart00362 RRM_2 RNA recognition motif.
Probab=28.22 E-value=66 Score=14.14 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCeEEEEeC-------CccEEEEcCHHHHHHHHHH
Q 046501 29 HRVLGAMADKYGPIFTIKMG-------VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~-------~~~~v~i~~p~~~~~il~~ 67 (100)
...+.++.++||++..+.+. +.-++...+++.+++++..
T Consensus 13 ~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 13 EEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 45666777899987665543 2235556789888888754
No 54
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=27.69 E-value=66 Score=15.19 Aligned_cols=13 Identities=8% Similarity=0.274 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHhC
Q 046501 28 PHRVLGAMADKYG 40 (100)
Q Consensus 28 ~~~~~~~~~~~yg 40 (100)
-+..+.+|.++||
T Consensus 50 dl~~ye~w~~~FG 62 (62)
T PF09336_consen 50 DLKKYEEWTKEFG 62 (62)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcC
Confidence 4677888888887
No 55
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=27.32 E-value=1.1e+02 Score=16.25 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 40 GPIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 40 g~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
|.|..+.+.....+||+-.+.++||=..
T Consensus 36 ~gVLti~f~~~~~~VINkQ~p~~QIWla 63 (105)
T cd00503 36 GGVLTLTFGNGSTIVINRQEPLRQIWLA 63 (105)
T ss_pred CCEEEEEECCCCEEEEeCCchhhhhhee
Confidence 5788888888889999999999998754
No 56
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=26.73 E-value=1.4e+02 Score=18.37 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=32.6
Q ss_pred CCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHH
Q 046501 5 RAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLT 66 (100)
Q Consensus 5 ~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~ 66 (100)
+.+|.|.+..-+||+.... .-...++++|.-+.+.+=.... --+.++.++.|+.
T Consensus 5 RFAPsPtG~lHlG~~r~al-------~n~l~Ar~~~G~~iLRieDtD~-~R~~~~~~~~I~~ 58 (230)
T cd00418 5 RFAPSPTGYLHIGHARTAL-------FNFAFARKYGGKFILRIEDTDP-ERSRPEYVESILE 58 (230)
T ss_pred EeCCCCCCcccHHHHHHHH-------HHHHHHHHcCCeEEEEeCcCCC-CCCChHHHHHHHH
Confidence 4577888888899876543 2224567788777666533222 2255666666653
No 57
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=26.56 E-value=1.3e+02 Score=21.27 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCc-cEEEEcCHHHHHHHH
Q 046501 5 RAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVN-RALVVSNWEMAKECL 65 (100)
Q Consensus 5 ~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~-~~v~i~~p~~~~~il 65 (100)
+.+|.|.+..-+||+.... .-..++++||..+.+.+=.. +.- ..++.++.|+
T Consensus 33 RFaPsPtG~LHiG~ar~al-------~n~~~Ar~~~G~~iLRieDTd~~r--~~~e~~~~I~ 85 (554)
T PRK05347 33 RFPPEPNGYLHIGHAKSIC-------LNFGLAQDYGGKCNLRFDDTNPEK--EDQEYVDSIK 85 (554)
T ss_pred EeCCCCCCcccHHHHHHHH-------HHHHHHHHhCCEEEEEECCCCCCc--CChHHHHHHH
Confidence 4578888888899876543 12234567777666655322 111 4555555554
No 58
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.13 E-value=55 Score=17.18 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCeEEEEeCCc
Q 046501 29 HRVLGAMADKYGPIFTIKMGVN 50 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~~ 50 (100)
-+-+.+++-.+|+-+++|+...
T Consensus 47 geGV~ELRId~GpGyRvY~~~~ 68 (100)
T COG3657 47 GEGVSELRIDHGPGYRVYFQQR 68 (100)
T ss_pred ccchhhheeccCCceEEEEEec
Confidence 3566778888999898887543
No 59
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=24.91 E-value=1.7e+02 Score=20.58 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=29.6
Q ss_pred CCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHH
Q 046501 5 RAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECL 65 (100)
Q Consensus 5 ~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il 65 (100)
+.+|.|.+..-+||+.... .-..++++||..+.+.+=.... --..++.++.|+
T Consensus 4 RFaPsPtG~LHiG~ar~al-------~n~~~A~~~~G~~iLRieDTd~-~r~~~e~~~~I~ 56 (522)
T TIGR00440 4 RFPPEPNGYLHIGHAKSIC-------LNFGYAKYYNGTCNLRFDDTNP-VKEDPEYVESIK 56 (522)
T ss_pred ecCCCCCCcccHHHHHHHH-------HHHHHHHHhCCEEEEEEcCCCc-ccCChHHHHHHH
Confidence 4678888899999876543 1123456677666555432211 223445544444
No 60
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.59 E-value=1.2e+02 Score=23.16 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhCCeEEEEeCCc
Q 046501 28 PHRVLGAMADKYGPIFTIKMGVN 50 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~~~~~ 50 (100)
+...+.++.++||+++-+.+.+.
T Consensus 298 FdrHf~~L~~~YG~v~IVNLLgt 320 (1080)
T KOG0566|consen 298 FDRHFSKLREKYGPVYIVNLLGT 320 (1080)
T ss_pred HHHHHHHHHHhcCcEEEEEcccC
Confidence 56889999999999999997765
No 61
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=24.58 E-value=66 Score=17.50 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=7.8
Q ss_pred ccEEEEcCHHHHH
Q 046501 50 NRALVVSNWEMAK 62 (100)
Q Consensus 50 ~~~v~i~~p~~~~ 62 (100)
.-++|+++|+.++
T Consensus 107 ~gv~VvN~P~~lR 119 (119)
T PF02951_consen 107 QGVLVVNDPQSLR 119 (119)
T ss_dssp TT-EEES-HHHHH
T ss_pred CCcEEEeChhhcC
Confidence 3577888888764
No 62
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=24.40 E-value=97 Score=16.45 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 40 GPIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 40 g~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
|.|..+.+.....+||+-.+..+||=..
T Consensus 35 ~gVLti~f~~~~~~VINkQ~p~~QIWla 62 (105)
T PRK00446 35 GGVLTLTFENGSKIIINRQEPLHELWLA 62 (105)
T ss_pred CCEEEEEECCCCEEEEeCCCchhheeEe
Confidence 5688888888889999998888888654
No 63
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=24.10 E-value=83 Score=17.29 Aligned_cols=37 Identities=16% Similarity=0.030 Sum_probs=23.9
Q ss_pred HHHHHHHHhC-CeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 31 VLGAMADKYG-PIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 31 ~~~~~~~~yg-~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
...++.++-| .+.++.+-..|..++.++...+.+..+
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~ 68 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE 68 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc
Confidence 3444555666 566777788899999998855555433
No 64
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.86 E-value=2.6e+02 Score=20.68 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 27 PPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 27 ~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
....++.+.-..||.+-.+---..-++-..|++.+++++..
T Consensus 92 ~i~~~i~~~~~~ygk~klv~~~~~~~~es~~~~~l~~l~~~ 132 (732)
T TIGR00603 92 GIIEFIRLCTQSYGKVKLVLKHNRYFVESPHPEVLQRLLKD 132 (732)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCCceEEecCCHHHHHHHHhc
Confidence 45678888889999977665555557777999999999843
No 65
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=23.73 E-value=1.6e+02 Score=17.15 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHhCCeEEEE
Q 046501 28 PHRVLGAMADKYGPIFTIK 46 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~ 46 (100)
..+.+..+.++||++..-+
T Consensus 97 t~e~~~~LL~~yGPLwv~~ 115 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAW 115 (166)
T ss_pred CHHHHHHHHHHcCCeEEEe
Confidence 3578889999999986444
No 66
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=23.53 E-value=94 Score=14.28 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=13.8
Q ss_pred hCCeEEEEeCCccEEEE
Q 046501 39 YGPIFTIKMGVNRALVV 55 (100)
Q Consensus 39 yg~~~~~~~~~~~~v~i 55 (100)
-|++..+..|+..+.|.
T Consensus 3 ~GDvV~LKSGGp~MTV~ 19 (53)
T PF09926_consen 3 IGDVVQLKSGGPRMTVT 19 (53)
T ss_pred CCCEEEEccCCCCeEEE
Confidence 37888898888888776
No 67
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=23.39 E-value=1.3e+02 Score=20.58 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=21.8
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCe
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPI 42 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~ 42 (100)
-|+.||+..+...+.+++.+.++.+++|-+
T Consensus 207 EPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~l 236 (432)
T COG0001 207 EPVAGNMGVVPPEPGFLEGLRELTEEHGAL 236 (432)
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHcCcE
Confidence 367777777664456788888888888853
No 68
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=23.31 E-value=35 Score=14.39 Aligned_cols=11 Identities=18% Similarity=0.281 Sum_probs=5.5
Q ss_pred cCHHHHHHHHH
Q 046501 56 SNWEMAKECLT 66 (100)
Q Consensus 56 ~~p~~~~~il~ 66 (100)
.|.+..++++.
T Consensus 21 td~~~Lk~vF~ 31 (36)
T PF11411_consen 21 TDEDQLKEVFN 31 (36)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55666666663
No 69
>PF03625 DUF302: Domain of unknown function DUF302 ; InterPro: IPR005180 This domain is found in an undescribed set of proteins. It normally occurs uniquely within a sequence, but is found as a tandem repeat (Q9X8B8 from SWISSPROT). It has an interesting phylogenetic distribution with the majority of examples in bacteria and archaea, but it is also found in Drosophila melanogaster (e.g. Q9VA18 from SWISSPROT). The hypothetical protein TT1751 from Thermus thermophilus has a beta-alpha-beta(4)-alpha structural fold [].; PDB: 1Q9U_A 1J3M_B.
Probab=22.99 E-value=81 Score=14.64 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=13.9
Q ss_pred CccEEEEcCHHHHHHHHHH
Q 046501 49 VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 49 ~~~~v~i~~p~~~~~il~~ 67 (100)
...++.+++|..+.+++..
T Consensus 18 ~~~i~~~cnp~~a~~ll~~ 36 (65)
T PF03625_consen 18 PYRILEFCNPKIAYQLLKA 36 (65)
T ss_dssp -EEEEEEE-HHHHHHHHCC
T ss_pred CeEEEEECChHHHHHHHHh
Confidence 3457788999999999954
No 70
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=22.32 E-value=1.4e+02 Score=21.55 Aligned_cols=39 Identities=10% Similarity=-0.091 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCe-----EEEEeCCccEEEEcCHHHHHHHHHH
Q 046501 29 HRVLGAMADKYGPI-----FTIKMGVNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 29 ~~~~~~~~~~yg~~-----~~~~~~~~~~v~i~~p~~~~~il~~ 67 (100)
..-+.+|.++-|++ .+.+..+--+|++.+||.+++++.+
T Consensus 710 ~p~vF~Wl~~aG~v~~~em~RTfN~GiGmVlvVs~e~ve~v~ke 753 (788)
T KOG0237|consen 710 LPPVFKWLQQAGNVPDSEMARTFNCGIGMVLVVSPENVERVLKE 753 (788)
T ss_pred CcHHHHHHHHcCCCCHHHHHHHhccccceEEEEcHHHHHHHHHH
Confidence 34566788888864 4566677789999999999999965
No 71
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=22.28 E-value=1.4e+02 Score=15.74 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHhCCeEEEE--------------eCCccEEEE--cCHHHHHHHHHHCCcccccC
Q 046501 27 PPHRVLGAMADKYGPIFTIK--------------MGVNRALVV--SNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 27 ~~~~~~~~~~~~yg~~~~~~--------------~~~~~~v~i--~~p~~~~~il~~~~~~~~~~ 75 (100)
.....+.+...+||.|.... .-+..++-| .++..++++|.+++..+.+.
T Consensus 17 ~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~ 81 (100)
T PF05172_consen 17 SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGS 81 (100)
T ss_dssp GGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTC
T ss_pred HHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCc
Confidence 45567778888999987553 223445444 68889999999988887654
No 72
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=22.14 E-value=97 Score=13.96 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHhCCeEEEEeC-CccEEEEc--CHHHHHHH
Q 046501 28 PHRVLGAMADKYGPIFTIKMG-VNRALVVS--NWEMAKEC 64 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~~~-~~~~v~i~--~p~~~~~i 64 (100)
....+.....++|.|...++. ..+.+++. +...++..
T Consensus 13 ~~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~A 52 (53)
T PF14605_consen 13 LAEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKA 52 (53)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhh
Confidence 334455556679999998887 35666554 66655543
No 73
>PF08798 CRISPR_assoc: CRISPR associated protein; InterPro: IPR010179 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a family of Cas proteins, including CT1974 from Chlorobium tepidum. This family is found in a minority of Cas regions.; PDB: 2Y9H_G 2Y8W_A 3QRP_A 1WJ9_A 3QRQ_A 2Y8Y_A 3QRR_A.
Probab=21.88 E-value=1.4e+02 Score=17.86 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.3
Q ss_pred EEEEcCHHHHHHHHHH
Q 046501 52 ALVVSNWEMAKECLTT 67 (100)
Q Consensus 52 ~v~i~~p~~~~~il~~ 67 (100)
++.|+|||..+++|.+
T Consensus 182 ~L~VtD~~~f~~~L~~ 197 (214)
T PF08798_consen 182 VLTVTDPEAFRQALRN 197 (214)
T ss_dssp EEEESSHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHh
Confidence 4468999999999965
No 74
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=21.56 E-value=2.2e+02 Score=18.07 Aligned_cols=54 Identities=13% Similarity=-0.114 Sum_probs=31.3
Q ss_pred CCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHH
Q 046501 5 RAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLT 66 (100)
Q Consensus 5 ~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~ 66 (100)
+..|.|.+..-+||+.... .-..+++++|..|.+.+=.... -=+.++.++.|+.
T Consensus 4 RFAPSPtG~lHiG~~rtAL-------~n~l~Ar~~gG~~iLRiEDtD~-~R~~~~~~~~I~~ 57 (272)
T TIGR03838 4 RFAPSPSGPLHFGSLVAAL-------GSYLDARAHGGRWLVRIEDLDP-PREVPGAADDILR 57 (272)
T ss_pred eeCCCCCCcccHHHHHHHH-------HHHHHHHHhCCEEEEEeCcCCC-CCCChHHHHHHHH
Confidence 4577788888899876433 2224566778766666532211 1145566666553
No 75
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=21.32 E-value=1.3e+02 Score=15.22 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCe---EEEEeCCccEEEEc-----CHHHHHHHHHH
Q 046501 30 RVLGAMADKYGPI---FTIKMGVNRALVVS-----NWEMAKECLTT 67 (100)
Q Consensus 30 ~~~~~~~~~yg~~---~~~~~~~~~~v~i~-----~p~~~~~il~~ 67 (100)
+...++.+.|.++ +++..+...-+-|. |-+.+.++|++
T Consensus 24 EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k~dK~~i~eiLqE 69 (81)
T PRK10597 24 ELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDRISEILQE 69 (81)
T ss_pred HHHHHHHhhCCCCCccEEEeecCCCceEecCCCcchHHHHHHHHHH
Confidence 3455677788876 78887777766663 44667777754
No 76
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=21.30 E-value=1.2e+02 Score=17.76 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCeEEEEe
Q 046501 29 HRVLGAMADKYGPIFTIKM 47 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~ 47 (100)
...+.++.+.||+++.+|-
T Consensus 100 ~~~m~~l~~tYGKt~HtWq 118 (171)
T PF06884_consen 100 KAEMEKLVKTYGKTWHTWQ 118 (171)
T ss_pred HHHHHHHHhhhCCeEEecc
Confidence 4678889999999999885
No 77
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=21.07 E-value=2.8e+02 Score=18.84 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCeEEEEeC------------CccEEEEcCHHHHHHHHHH-CCcccccCC
Q 046501 30 RVLGAMADKYGPIFTIKMG------------VNRALVVSNWEMAKECLTT-HDKVFASRP 76 (100)
Q Consensus 30 ~~~~~~~~~yg~~~~~~~~------------~~~~v~i~~p~~~~~il~~-~~~~~~~~~ 76 (100)
+-+.+...+||.|..+.+. +.-+|...+.+.++.++.. ++..|.++.
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~ 493 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRV 493 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4566778899998877753 1235667899998888865 455665554
No 78
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=20.81 E-value=1.1e+02 Score=14.22 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHhC-CeEEEEeCCccEEEE-cCHHHHHHHH
Q 046501 26 EPPHRVLGAMADKYG-PIFTIKMGVNRALVV-SNWEMAKECL 65 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg-~~~~~~~~~~~~v~i-~~p~~~~~il 65 (100)
......+.+.+++|| ..+++.... .+.+. .+.+.+..++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q-~l~l~~v~~~~~~~i~ 63 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQ-NLQLRGVPEENLPAIF 63 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTS-CEEEEEEEGGGHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCC-eEEEeCCCHHHHHHHH
Confidence 346788889999999 455655433 34433 4555555544
No 79
>COG3789 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.76 E-value=1.7e+02 Score=16.33 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=21.2
Q ss_pred HHhCCeE-EEEeCCccEEE---------EcCHHHHHHHHHHCCccc
Q 046501 37 DKYGPIF-TIKMGVNRALV---------VSNWEMAKECLTTHDKVF 72 (100)
Q Consensus 37 ~~yg~~~-~~~~~~~~~v~---------i~~p~~~~~il~~~~~~~ 72 (100)
++||+.= .+-..+..+++ ++|+....+.+.++.+.+
T Consensus 44 ~eyGDLpi~V~~~g~Qiivetllwp~s~i~n~aeFNeflL~~qk~~ 89 (146)
T COG3789 44 NEYGDLPINVLFTGRQIIVETLLWPVSSISNPAEFNEFLLRNQKMM 89 (146)
T ss_pred hhcCCcceEEccCccEEeEEEEeccccccCCHHHHHHHHHhhcccc
Confidence 4688642 23334444443 578888877777766544
No 80
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=20.58 E-value=1.2e+02 Score=14.50 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=21.9
Q ss_pred HHHHHHHHHhC-CeEEEE-eC-CccEEEEc-CHHHHHHHHHH
Q 046501 30 RVLGAMADKYG-PIFTIK-MG-VNRALVVS-NWEMAKECLTT 67 (100)
Q Consensus 30 ~~~~~~~~~yg-~~~~~~-~~-~~~~v~i~-~p~~~~~il~~ 67 (100)
..+.+..+++| -...+. .| |..++.++ +.+.++++...
T Consensus 37 ~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~ 78 (85)
T PF08544_consen 37 DELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERVAEA 78 (85)
T ss_dssp HHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHHHHH
Confidence 45556678888 334444 22 33455566 77777776643
Done!