Query 046501
Match_columns 100
No_of_seqs 109 out of 1032
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 22:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tbg_A Cytochrome P450 2D6; mo 99.8 3.1E-21 1.1E-25 121.9 6.0 98 2-100 7-106 (479)
2 3swz_A Steroid 17-alpha-hydrox 99.8 5.9E-21 2E-25 121.3 6.9 98 3-100 6-103 (494)
3 3pm0_A Cypib1, cytochrome P450 99.8 3.7E-19 1.3E-23 113.1 6.0 95 3-100 7-101 (507)
4 3e6i_A CYPIIE1, P450-J, cytoch 99.8 1E-18 3.4E-23 110.5 7.9 94 3-100 8-101 (476)
5 1po5_A Cytochrome P450 2B4; ox 99.7 3.7E-17 1.3E-21 103.6 5.3 95 3-100 8-102 (476)
6 2fdv_A Cytochrome P450 2A6; CY 99.7 8.3E-17 2.8E-21 102.0 6.2 95 3-100 8-102 (476)
7 3nxu_A Cytochrome P450 3A4; al 99.7 1.7E-17 5.9E-22 105.1 2.2 88 7-100 16-104 (485)
8 3ld6_A Lanosterol 14-alpha dem 99.7 3.1E-17 1E-21 103.7 3.0 86 12-100 19-104 (461)
9 2hi4_A Cytochrome P450 1A2; CY 99.7 1.4E-16 4.6E-21 101.5 5.5 94 4-100 13-109 (495)
10 3czh_A Cytochrome P450 2R1; vi 99.6 2E-16 6.7E-21 100.6 4.6 97 3-100 10-107 (481)
11 1r9o_A Cytochrome P450 2C9; mo 99.6 5.9E-17 2E-21 102.7 1.6 94 4-100 10-103 (477)
12 3i3k_A Lanosterol 14-alpha dem 99.6 1.5E-16 5.1E-21 100.4 3.0 70 4-75 10-80 (461)
13 3gw9_A Sterol 14alpha-demethyl 99.6 1.2E-16 4E-21 100.4 2.4 92 5-100 3-96 (450)
14 3v8d_A Cholesterol 7-alpha-mon 99.6 6.2E-16 2.1E-20 98.3 5.5 94 2-100 10-105 (491)
15 3s79_A Cytochrome P450 19A1; o 99.6 5.7E-16 2E-20 98.5 3.7 96 3-100 43-141 (503)
16 3k9v_A 1,25-dihydroxyvitamin D 99.6 2.1E-15 7E-20 95.4 4.7 92 7-100 26-123 (482)
17 3dax_A Cytochrome P450 7A1; ch 99.6 2.8E-15 9.6E-20 95.1 5.0 64 4-69 12-76 (491)
18 3b6h_A Prostacyclin synthase; 99.5 2.2E-15 7.4E-20 95.9 2.2 66 3-70 16-82 (498)
19 3dbg_A Putative cytochrome P45 99.5 1.1E-14 3.6E-19 92.2 3.5 90 4-100 22-112 (467)
20 2cib_A Cytochrome P450 51; hem 99.5 1.1E-13 3.6E-18 87.5 8.0 90 5-100 4-94 (455)
21 3qz1_A Steroid 21-hydroxylase; 99.5 6E-15 2E-19 93.7 2.2 90 4-100 28-117 (496)
22 2ve3_A Putative cytochrome P45 99.5 1.2E-14 4.2E-19 91.5 2.4 92 3-100 10-101 (444)
23 3b98_A Prostaglandin I2 syntha 99.5 5.6E-15 1.9E-19 93.4 -0.2 64 4-69 17-81 (475)
24 2ij2_A Cytochrome P450 BM3; mo 99.4 5.9E-13 2E-17 84.5 6.3 91 7-100 5-96 (470)
25 2cd8_A Cytochrome P450 monooxy 99.4 6.6E-14 2.3E-18 88.3 1.5 92 2-100 23-120 (436)
26 3n9y_A Cholesterol SIDE-chain 99.3 2.4E-12 8.2E-17 81.6 4.0 91 7-100 11-107 (487)
27 1n97_A CYP175A1; electron tran 99.1 3.5E-12 1.2E-16 79.3 -0.4 82 11-100 5-87 (389)
28 1jfb_A Nitric-oxide reductase 99.0 1.7E-10 5.8E-15 72.0 3.7 88 6-100 2-95 (404)
29 1ued_A P450 OXYC, P450 monooxy 99.0 3.1E-10 1.1E-14 71.0 4.0 87 3-100 8-105 (406)
30 1izo_A P450bsbeta, cytochrome 99.0 8.9E-11 3E-15 73.5 0.6 83 12-100 7-92 (417)
31 3awm_A Fatty acid alpha-hydrox 98.8 6E-10 2E-14 69.7 1.4 81 14-100 8-91 (415)
32 3dsk_A Cytochrome P450 74A, ch 98.8 5.9E-10 2E-14 71.0 1.3 62 4-65 27-99 (495)
33 2zbx_A Cytochrome P450-SU1; be 98.8 4.3E-09 1.5E-13 66.0 4.5 59 7-68 7-67 (412)
34 3mdm_A Cholesterol 24-hydroxyl 98.8 4.7E-09 1.6E-13 66.2 4.5 48 26-75 10-57 (456)
35 2zwu_A Camphor 5-monooxygenase 98.8 2E-08 6.9E-13 63.1 6.2 92 2-100 8-109 (415)
36 3ivy_A Cytochrome P450 CYP125; 98.8 9.6E-09 3.3E-13 64.8 4.7 72 26-100 37-124 (433)
37 1s1f_A Putative cytochrome P45 98.7 7.8E-09 2.7E-13 64.7 3.7 87 5-100 8-101 (406)
38 3ejb_B Biotin biosynthesis cyt 98.7 3.4E-08 1.2E-12 61.6 6.1 69 26-100 13-88 (404)
39 3oo3_A OXY protein; cytochrome 98.7 6E-09 2.1E-13 64.6 2.6 72 26-100 12-87 (384)
40 1cpt_A Cytochrome P450-TERP; o 98.7 8.5E-09 2.9E-13 64.9 3.1 91 2-100 3-110 (428)
41 4fb2_A P450CIN; heme, monooxyg 98.7 1E-08 3.5E-13 63.9 2.7 72 26-100 19-92 (398)
42 3a4g_A Vitamin D hydroxylase; 98.6 2.4E-08 8.4E-13 62.6 3.8 71 26-100 20-95 (411)
43 3abb_A CYP105D6, cytochrome P4 98.6 2.1E-08 7.3E-13 62.7 2.4 42 26-68 24-66 (408)
44 1z8o_A 6-deoxyerythronolide B 98.6 9.7E-08 3.3E-12 59.7 5.0 48 26-76 14-61 (404)
45 2y5n_A MYCG, P-450-like protei 98.5 4.9E-08 1.7E-12 61.4 2.4 71 26-100 37-111 (417)
46 3aba_A Cytochrome P450; oxidor 98.5 6E-08 2E-12 60.7 2.5 71 26-100 19-95 (403)
47 3lxh_A Cytochrome P450; heme, 98.5 3.3E-07 1.1E-11 57.6 5.9 72 26-100 38-110 (421)
48 2wm5_A CYP124, putative cytoch 98.3 2.6E-07 8.9E-12 58.4 2.8 71 27-100 45-125 (435)
49 2z36_A MOXA, cytochrome P450 t 98.3 1.7E-07 5.8E-12 58.9 1.7 48 26-76 22-70 (413)
50 3oft_A Cytochrome P450, CYP101 98.3 1.9E-07 6.6E-12 58.1 1.5 71 26-100 24-94 (396)
51 3tyw_A Putative cytochrome P45 98.3 1.9E-07 6.6E-12 58.6 1.1 47 26-75 29-76 (417)
52 2xbk_A PIMD protein; epoxidati 98.2 5.1E-07 1.8E-11 56.6 2.3 48 26-76 26-74 (404)
53 2uuq_A CYP130, cytochrome P450 98.2 7.6E-07 2.6E-11 55.9 2.5 70 26-100 25-104 (414)
54 3nc3_A Cytochrome P450 CYPX; c 98.2 1.1E-06 3.7E-11 55.7 2.8 68 27-100 54-121 (441)
55 3r9b_A Cytochrome P450 164A2; 98.1 3E-06 1E-10 53.1 4.7 69 26-100 29-105 (418)
56 2jjn_A Cytochrome P450 113A1; 98.1 1.9E-06 6.3E-11 54.0 2.8 68 26-100 28-95 (411)
57 1odo_A Putative cytochrome P45 98.1 6.7E-06 2.3E-10 51.5 5.1 42 26-68 15-56 (408)
58 3dan_A Cytochrome P450 74A2; A 98.1 8.6E-07 2.9E-11 56.1 0.9 46 6-51 10-60 (473)
59 3mgx_A Putative P450 monooxyge 98.0 1.1E-06 3.9E-11 55.2 1.3 50 26-77 37-88 (415)
60 1n40_A P450 MT2, cytochrome P4 98.0 9.5E-06 3.3E-10 50.6 5.1 45 26-73 16-61 (396)
61 1gwi_A CYP154C1, cytochrome P4 98.0 1.3E-05 4.6E-10 50.2 5.7 42 26-68 17-59 (411)
62 3tkt_A Cytochrome P450; aromat 98.0 1.6E-06 5.6E-11 55.0 1.6 48 28-77 47-97 (450)
63 2dkk_A Cytochrome P450; CYP158 98.0 2E-06 6.9E-11 54.0 2.0 71 26-100 27-104 (411)
64 2xkr_A CYP142, putative cytoch 98.0 2.2E-06 7.5E-11 53.5 1.9 66 26-100 18-83 (398)
65 2z3t_A Cytochrome P450; monoxy 98.0 2.3E-05 7.9E-10 49.4 6.0 48 26-76 20-69 (425)
66 1q5d_A P450 epoxidase; cytochr 97.9 2.9E-05 9.9E-10 48.8 5.7 46 26-76 26-71 (419)
67 3buj_A CALO2; heme, iron, meta 97.9 7.3E-06 2.5E-10 51.1 2.9 67 27-100 14-87 (397)
68 1lfk_A OXYB, P450 monooxygenas 97.9 6.6E-06 2.3E-10 51.4 2.3 65 32-100 19-96 (398)
69 1io7_A Cytochrome P450 CYP119; 97.8 2.2E-05 7.6E-10 48.5 3.7 65 29-100 2-76 (368)
70 3b4x_A 367AA long hypothetical 97.7 1.7E-05 5.8E-10 49.1 2.2 65 29-100 2-76 (367)
71 3rwl_A Cytochrome P450 alkane 97.5 0.00013 4.5E-09 46.0 4.1 49 26-76 38-87 (426)
72 2rfb_A Cytochrome P450; heme, 97.2 4.2E-05 1.4E-09 46.8 -0.7 54 37-100 2-55 (343)
73 3p3o_A Cytochrome P450; monoox 96.7 0.00014 4.7E-09 45.7 -1.3 40 26-68 33-72 (416)
74 4dnj_A Putative cytochrome P45 96.5 0.0022 7.4E-08 40.3 3.0 57 12-74 19-78 (412)
75 2yjn_B Erycii, DTDP-4-keto-6-d 96.2 0.0011 3.9E-08 41.5 0.8 57 12-75 42-101 (381)
76 2wiy_A XPLA-heme, cytochrome P 95.9 0.0027 9.3E-08 39.6 1.5 66 27-100 21-87 (394)
77 2diu_A KIAA0430 protein; struc 89.7 1.2 4E-05 22.5 5.2 62 14-76 12-75 (96)
78 4dxy_A Cytochrome P450, CYP101 84.9 2 7E-05 27.1 4.8 48 27-76 38-86 (417)
79 1nu4_A U1A RNA binding domain; 79.4 4 0.00014 19.7 5.7 60 13-72 10-76 (97)
80 1s79_A Lupus LA protein; RRM, 78.4 4.8 0.00016 20.1 6.2 59 14-76 14-80 (103)
81 1iqt_A AUF1, heterogeneous nuc 74.5 4.9 0.00017 18.3 5.4 46 29-74 13-67 (75)
82 2krb_A Eukaryotic translation 74.5 5.2 0.00018 18.6 7.1 58 15-74 5-74 (81)
83 3lqv_A PRE-mRNA branch site pr 74.0 6.7 0.00023 19.6 8.3 66 6-75 3-75 (115)
84 1whv_A Poly(A)-specific ribonu 73.7 4.6 0.00016 20.5 3.0 39 28-66 28-67 (100)
85 3s6e_A RNA-binding protein 39; 68.8 10 0.00034 19.5 4.7 71 6-76 2-84 (114)
86 3pgw_S U1-70K; protein-RNA com 68.4 21 0.00071 23.0 6.4 58 13-74 104-171 (437)
87 2dgx_A KIAA0430 protein; RRM d 66.1 9.8 0.00034 18.4 5.8 62 13-74 11-79 (96)
88 3s7r_A Heterogeneous nuclear r 65.2 9.5 0.00032 17.9 4.7 56 13-72 13-77 (87)
89 2a3j_A U1 small nuclear ribonu 63.3 14 0.00048 19.2 7.1 63 13-75 31-100 (127)
90 2mss_A Protein (musashi1); RNA 62.8 9.8 0.00033 17.2 4.9 46 29-74 13-67 (75)
91 1x4b_A Heterogeneous nuclear r 62.0 13 0.00046 18.5 3.8 56 15-74 31-95 (116)
92 2cpi_A CCR4-NOT transcription 61.4 10 0.00034 19.0 3.0 59 13-75 17-91 (111)
93 1x4c_A Splicing factor, argini 60.1 14 0.00049 18.2 7.5 51 13-67 17-69 (108)
94 3beg_B Splicing factor, argini 58.8 16 0.00055 18.4 6.6 59 13-75 18-79 (115)
95 3ctr_A Poly(A)-specific ribonu 58.2 4.3 0.00015 20.7 1.1 49 28-76 18-69 (101)
96 2cq4_A RNA binding motif prote 56.3 17 0.0006 18.0 5.5 47 29-75 39-94 (114)
97 2nlw_A Eukaryotic translation 55.6 17 0.0006 17.8 7.7 62 13-75 17-89 (105)
98 2jwn_A Embryonic polyadenylate 55.0 19 0.00066 18.1 5.0 46 29-74 50-104 (124)
99 1b35_D CRPV, protein (cricket 54.1 4.4 0.00015 17.7 0.7 12 12-23 30-41 (57)
100 3ex7_B RNA-binding protein 8A; 53.4 21 0.00071 18.1 7.5 58 14-75 25-92 (126)
101 4f25_A Polyadenylate-binding p 52.8 21 0.00072 17.9 5.9 56 13-72 7-70 (115)
102 4fxv_A ELAV-like protein 1; RN 51.5 21 0.00071 17.5 6.0 57 14-74 22-88 (99)
103 2cqc_A Arginine/serine-rich sp 51.1 19 0.00066 17.0 6.7 52 12-67 16-76 (95)
104 2xs2_A Deleted in azoospermia- 50.9 19 0.00064 17.4 2.9 56 14-74 12-75 (102)
105 2dnz_A Probable RNA-binding pr 50.3 20 0.00069 17.0 7.3 60 12-75 6-75 (95)
106 1x4e_A RNA binding motif, sing 49.5 20 0.00067 16.6 5.1 51 12-66 6-65 (85)
107 1p27_B RNA-binding protein 8A; 49.3 23 0.00077 17.2 6.6 57 14-74 26-92 (106)
108 3ulh_A THO complex subunit 4; 49.1 23 0.00078 17.3 6.3 57 13-73 31-96 (107)
109 2dgu_A Heterogeneous nuclear r 48.3 23 0.0008 17.2 6.9 58 13-74 13-72 (103)
110 3d2w_A TAR DNA-binding protein 48.1 22 0.00077 16.9 5.8 49 12-64 12-64 (89)
111 2voo_A Lupus LA protein; RNA-b 47.4 36 0.0012 19.0 5.0 48 28-75 122-177 (193)
112 2ad9_A Polypyrimidine tract-bi 47.2 29 0.00099 17.9 6.0 51 12-66 32-85 (119)
113 3s8s_A Histone-lysine N-methyl 47.1 27 0.00092 17.5 5.7 58 13-74 8-75 (110)
114 2cq0_A Eukaryotic translation 46.6 25 0.00085 17.0 3.8 51 13-67 17-76 (103)
115 2cqd_A RNA-binding region cont 46.3 27 0.00093 17.3 6.1 58 13-74 19-85 (116)
116 2rs2_A Musashi-1, RNA-binding 45.9 27 0.00094 17.3 6.2 52 14-69 28-88 (109)
117 3ucg_A Polyadenylate-binding p 45.3 24 0.00082 16.4 5.2 46 29-74 20-74 (89)
118 1rk8_A CG8781-PA, CG8781-PA pr 44.2 37 0.0013 18.2 5.7 57 14-74 75-141 (165)
119 1wi8_A EIF-4B, eukaryotic tran 44.1 28 0.00096 16.9 6.6 60 10-74 14-83 (104)
120 2zdj_A Hypothetical protein TT 43.7 25 0.00086 16.2 2.7 22 48-69 10-31 (69)
121 2d9p_A Polyadenylate-binding p 43.2 29 0.00099 16.8 6.8 60 12-75 16-83 (103)
122 2jvr_A Nucleolar protein 3; RN 43.0 33 0.0011 17.3 6.5 59 13-75 30-95 (111)
123 2dgv_A HnRNP M, heterogeneous 42.7 27 0.00094 16.3 7.1 59 13-75 10-76 (92)
124 3pgw_A U1-A; protein-RNA compl 42.6 49 0.0017 19.3 5.5 56 12-67 10-71 (282)
125 2do4_A Squamous cell carcinoma 42.4 29 0.001 16.6 7.3 58 13-74 19-85 (100)
126 2kvi_A Nuclear polyadenylated 42.0 30 0.001 16.5 6.6 59 13-75 12-73 (96)
127 3fgx_A Rbstp2171; structural g 41.5 26 0.00089 18.2 2.5 16 32-47 10-25 (114)
128 2xnq_A Nuclear polyadenylated 41.4 31 0.0011 16.6 7.1 50 14-67 25-76 (97)
129 2l82_A Designed protein OR32; 41.4 31 0.0011 17.8 2.8 16 52-67 6-21 (162)
130 2hvz_A Splicing factor, argini 41.1 31 0.0011 16.5 5.8 39 29-67 14-56 (101)
131 1oo0_B CG8781-PA, drosophila Y 41.0 33 0.0011 16.8 6.6 55 14-72 29-93 (110)
132 2dhg_A TRNA selenocysteine ass 40.9 32 0.0011 16.6 7.0 52 12-67 10-70 (104)
133 2fy1_A RNA-binding motif prote 40.8 35 0.0012 17.1 6.0 59 13-75 9-76 (116)
134 2dh8_A DAZ-associated protein 40.5 33 0.0011 16.6 6.2 59 13-75 18-85 (105)
135 2cqi_A Nucleolysin TIAR; RNA r 40.4 33 0.0011 16.6 6.4 58 13-74 17-82 (103)
136 1x4d_A Matrin 3; structural ge 40.1 36 0.0012 16.9 6.6 53 10-66 14-70 (102)
137 1uaw_A Mouse-musashi-1; RNP-ty 39.9 28 0.00095 15.6 3.2 43 30-72 15-66 (77)
138 3n9u_C Cleavage and polyadenyl 39.7 45 0.0015 17.9 6.2 47 29-75 69-127 (156)
139 2jvo_A Nucleolar protein 3; nu 39.5 36 0.0012 16.8 5.6 56 15-74 35-92 (108)
140 1sjq_A Polypyrimidine tract-bi 39.2 39 0.0013 17.0 6.8 51 12-66 17-70 (105)
141 2cjk_A Nuclear polyadenylated 38.6 44 0.0015 17.5 5.0 46 29-74 101-155 (167)
142 3bs9_A Nucleolysin TIA-1 isofo 37.9 32 0.0011 15.8 5.8 56 13-72 8-73 (87)
143 2adc_A Polypyrimidine tract-bi 37.8 56 0.0019 18.5 8.2 57 14-74 37-99 (229)
144 2plx_B Peptide inhibitor; heli 37.7 18 0.00063 12.9 1.8 11 56-66 12-22 (26)
145 1whw_A Hypothetical protein ri 37.1 37 0.0013 16.2 6.8 51 13-67 10-69 (99)
146 1x5p_A Negative elongation fac 36.1 38 0.0013 16.1 5.0 40 28-67 26-68 (97)
147 2bz2_A Negative elongation fac 36.0 45 0.0016 16.9 4.1 48 28-75 50-101 (121)
148 2ywk_A Putative RNA-binding pr 35.9 37 0.0013 16.0 5.4 56 13-72 18-82 (95)
149 1x5u_A Splicing factor 3B subu 35.8 40 0.0014 16.2 8.6 59 13-75 17-85 (105)
150 2cq1_A PTB-like protein L; RRM 35.6 43 0.0015 16.5 5.9 53 10-66 14-69 (101)
151 2la6_A RNA-binding protein FUS 35.3 40 0.0014 16.1 6.1 58 13-74 15-90 (99)
152 2pe8_A Splicing factor 45; RRM 34.8 45 0.0015 16.5 5.4 68 9-76 6-85 (105)
153 2dha_A FLJ20171 protein; RRM d 34.7 49 0.0017 17.0 3.0 58 14-75 26-95 (123)
154 2dnm_A SRP46 splicing factor; 34.5 42 0.0014 16.1 7.3 59 13-75 15-83 (103)
155 2cpf_A RNA binding motif prote 34.4 41 0.0014 15.9 6.5 58 13-74 7-77 (98)
156 1wf0_A TDP-43, TAR DNA-binding 34.1 40 0.0014 15.7 3.6 48 13-64 7-58 (88)
157 4a8x_A RNA-binding protein wit 34.0 39 0.0013 15.5 6.7 57 14-74 7-74 (88)
158 2dgs_A DAZ-associated protein 33.8 43 0.0015 16.0 8.0 59 13-75 12-79 (99)
159 2cq3_A RNA-binding protein 9; 33.7 44 0.0015 16.1 7.4 58 13-74 17-82 (103)
160 1l3k_A Heterogeneous nuclear r 33.4 59 0.002 17.5 5.9 56 13-72 15-79 (196)
161 1whx_A Hypothetical protein ri 32.9 49 0.0017 16.4 7.4 58 15-76 14-75 (111)
162 3md1_A Nuclear and cytoplasmic 32.3 41 0.0014 15.3 5.5 45 29-73 15-69 (83)
163 1sjr_A Polypyrimidine tract-bi 32.0 68 0.0023 17.7 6.8 49 15-67 50-103 (164)
164 2cph_A RNA binding motif prote 31.8 48 0.0016 16.0 9.1 59 13-75 17-87 (107)
165 2ghp_A U4/U6 snRNA-associated 31.8 80 0.0027 18.5 5.6 56 13-72 43-105 (292)
166 2err_A Ataxin-2-binding protei 31.7 51 0.0017 16.2 5.3 45 29-73 43-95 (109)
167 1p1t_A Cleavage stimulation fa 31.7 48 0.0016 15.9 5.0 58 14-75 11-78 (104)
168 1x4g_A Nucleolysin TIAR; struc 31.6 50 0.0017 16.1 6.9 58 13-74 27-88 (109)
169 3q2s_C Cleavage and polyadenyl 31.3 78 0.0027 18.2 5.0 47 29-75 82-140 (229)
170 2dgt_A RNA-binding protein 30; 31.0 47 0.0016 15.6 6.7 58 13-74 12-71 (92)
171 2e5h_A Zinc finger CCHC-type a 31.0 47 0.0016 15.6 7.0 51 13-67 18-77 (94)
172 3zzy_A Polypyrimidine tract-bi 30.4 64 0.0022 17.0 5.2 49 15-67 32-85 (130)
173 2hgn_A Heterogeneous nuclear r 29.7 67 0.0023 17.0 3.7 57 14-75 49-113 (139)
174 3tyt_A Heterogeneous nuclear r 29.6 79 0.0027 17.7 6.7 50 13-66 6-60 (205)
175 2cpz_A CUG triplet repeat RNA- 29.6 56 0.0019 16.1 6.3 57 13-73 27-93 (115)
176 2dnq_A RNA-binding protein 4B; 29.6 50 0.0017 15.4 7.3 60 12-75 9-70 (90)
177 1x4a_A Splicing factor, argini 29.5 55 0.0019 15.9 8.1 56 14-73 25-87 (109)
178 2cpx_A Hypothetical protein FL 29.2 57 0.0019 16.0 5.7 59 13-75 27-95 (115)
179 3md3_A Nuclear and cytoplasmic 29.1 65 0.0022 16.6 5.6 38 29-66 14-59 (166)
180 2qfj_A FBP-interacting repress 29.0 76 0.0026 17.4 7.5 39 29-67 42-89 (216)
181 2dis_A Unnamed protein product 29.0 56 0.0019 15.8 6.5 51 13-67 10-71 (109)
182 2kxn_B Transformer-2 protein h 28.9 65 0.0022 16.5 8.7 58 13-74 48-115 (129)
183 2cpd_A Apobec-1 stimulating pr 28.7 54 0.0019 15.6 6.5 57 13-73 17-77 (99)
184 3p5t_L Cleavage and polyadenyl 28.4 53 0.0018 15.4 3.9 47 29-75 15-73 (90)
185 2div_A TRNA selenocysteine ass 28.4 55 0.0019 15.5 6.3 60 12-75 10-80 (99)
186 2dnr_A Synaptojanin-1; RRM dom 28.4 61 0.0021 16.1 5.1 48 28-75 28-76 (91)
187 3v4m_A Splicing factor U2AF 65 28.0 62 0.0021 16.0 6.1 47 30-76 30-88 (105)
188 1wf1_A RNA-binding protein RAL 27.7 61 0.0021 15.8 6.5 57 13-73 29-88 (110)
189 1fxl_A Paraneoplastic encephal 27.4 71 0.0024 16.5 5.8 39 29-67 16-63 (167)
190 1wg5_A Heterogeneous nuclear r 27.2 61 0.0021 15.7 6.4 59 13-75 17-84 (104)
191 2dgo_A Cytotoxic granule-assoc 26.1 67 0.0023 15.8 6.9 51 13-67 17-76 (115)
192 2dng_A Eukaryotic translation 25.9 64 0.0022 15.5 5.4 63 7-74 11-82 (103)
193 2dnh_A Bruno-like 5, RNA bindi 25.9 64 0.0022 15.5 6.5 57 13-73 17-82 (105)
194 2cmy_B Beta trypsin, veronica 25.9 38 0.0013 12.9 1.3 12 56-67 17-28 (34)
195 2d9o_A DNAJ (HSP40) homolog, s 25.6 70 0.0024 15.8 6.3 40 28-67 30-73 (100)
196 3ns6_A Eukaryotic translation 25.5 66 0.0022 15.5 5.7 61 14-74 9-81 (100)
197 4f02_A Polyadenylate-binding p 25.4 95 0.0032 17.3 6.0 51 13-67 17-76 (213)
198 1x4f_A Matrin 3; structural ge 25.4 75 0.0026 16.1 3.9 51 12-66 26-80 (112)
199 2dnp_A RNA-binding protein 14; 25.2 62 0.0021 15.0 8.1 59 12-74 10-70 (90)
200 3mdf_A Peptidyl-prolyl CIS-tra 25.1 59 0.002 14.8 7.2 57 12-72 8-74 (85)
201 1x4h_A RNA-binding protein 28; 24.5 70 0.0024 15.5 8.1 51 13-67 17-76 (111)
202 2j76_E EIF-4B, EIF4B, eukaryot 24.3 69 0.0024 15.3 4.5 55 15-74 23-87 (100)
203 2x1f_A MRNA 3'-END-processing 24.2 67 0.0023 15.1 6.7 50 14-67 5-63 (96)
204 3kgk_A Arsenical resistance op 24.1 84 0.0029 16.2 2.8 36 30-65 30-66 (110)
205 1h2v_Z 20 kDa nuclear CAP bind 23.8 89 0.003 16.4 7.0 51 13-67 41-100 (156)
206 2ki2_A SS-DNA binding protein 23.5 67 0.0023 14.8 4.1 46 29-75 15-70 (90)
207 2ytc_A PRE-mRNA-splicing facto 23.3 65 0.0022 14.6 7.5 51 13-67 14-67 (85)
208 2cpe_A RNA-binding protein EWS 23.1 77 0.0026 15.4 4.7 57 14-74 18-92 (113)
209 2ek1_A RNA-binding protein 12; 22.8 58 0.002 15.2 1.9 58 13-74 17-84 (95)
210 1qm9_A Polypyrimidine tract-bi 22.6 1E+02 0.0035 16.7 6.1 47 29-75 18-69 (198)
211 2khc_A Testis-specific RNP-typ 22.2 83 0.0028 15.5 5.8 39 29-67 54-101 (118)
212 1wel_A RNA-binding protein 12; 21.6 90 0.0031 15.6 4.0 59 13-75 27-94 (124)
213 3nmr_A Cugbp ELAV-like family 20.9 1E+02 0.0035 16.1 5.9 39 29-67 109-155 (175)
214 1u6f_A Tcubp1, RNA-binding pro 20.8 98 0.0033 15.8 6.7 46 29-74 56-111 (139)
215 2kn4_A Immunoglobulin G-bindin 20.7 1E+02 0.0036 16.1 8.7 59 13-75 72-140 (158)
216 2do0_A HnRNP M, heterogeneous 20.7 89 0.003 15.2 6.8 58 13-74 17-83 (114)
217 1m1f_A KID toxin protein; toxi 20.4 93 0.0032 15.4 2.8 23 40-62 4-35 (110)
218 2cpj_A Non-POU domain-containi 20.2 85 0.0029 14.8 5.6 59 13-75 17-79 (99)
219 2ku7_A MLL1 PHD3-CYP33 RRM chi 20.2 1E+02 0.0034 15.6 7.8 39 29-67 77-124 (140)
220 2dit_A HIV TAT specific factor 20.2 94 0.0032 15.3 3.8 46 30-75 41-92 (112)
No 1
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.84 E-value=3.1e-21 Score=121.86 Aligned_cols=98 Identities=20% Similarity=0.394 Sum_probs=77.9
Q ss_pred CCCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHH
Q 046501 2 KKRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAM 81 (100)
Q Consensus 2 ~~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~ 81 (100)
++.++||||.++|++||++.+.. ..++..+.+++++||+||++++|+.++|+|+||++++++|++++..|++|+.....
T Consensus 7 s~~kLPPGP~~lP~iGn~~~~~~-~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~ 85 (479)
T 3tbg_A 7 SKGKLPPGPLPLPGLGNLLHVDF-QNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT 85 (479)
T ss_dssp --CCCCCCSCCBTTTBTGGGCCT-TSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGG
T ss_pred CCCCCCCCCCCcCcccchHhhcC-CCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHH
Confidence 34568999999999999998863 56888999999999999999999999999999999999999988899888765544
Q ss_pred HHhhc--CccceEeCcCCCCC
Q 046501 82 EIFGY--NFSMFGFSPYGSYW 100 (100)
Q Consensus 82 ~~~~~--~~~gl~~~~~g~~W 100 (100)
..+.. .+.+++++.+|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~w 106 (479)
T 3tbg_A 86 QILGFGPRSQGVFLARYGPAW 106 (479)
T ss_dssp GGGTCBTTBCCSTTCCSSHHH
T ss_pred HHhccCCCCCceeeCCCCHHH
Confidence 43332 22456665557765
No 2
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.83 E-value=5.9e-21 Score=121.31 Aligned_cols=98 Identities=28% Similarity=0.520 Sum_probs=78.1
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
..+.||+|.++|++||++++.....++..+.+++++||+++++++|+.++++++||++++++|.+++..|++++......
T Consensus 6 ~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~~ 85 (494)
T 3swz_A 6 GAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLD 85 (494)
T ss_dssp ------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHHH
T ss_pred CCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHHH
Confidence 34568888889999999988632457889999999999999999999999999999999999999999999888765555
Q ss_pred HhhcCccceEeCcCCCCC
Q 046501 83 IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~gl~~~~~g~~W 100 (100)
.++..+.|++++++|++|
T Consensus 86 ~~~~~~~gl~~~~~g~~w 103 (494)
T 3swz_A 86 IASNNRKGIAFADSGAHW 103 (494)
T ss_dssp HHTTTTCSSSSSCSSHHH
T ss_pred HhccCCCCeEeCCCCHHH
Confidence 555444688877668777
No 3
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=113.14 Aligned_cols=95 Identities=23% Similarity=0.531 Sum_probs=60.9
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
..+.||+|+++|++||+..+. ..++..+.+++++||+++++++++.++++++||+++++|+.++...|.+++......
T Consensus 7 ~~~~pPgP~~~P~iG~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~ 84 (507)
T 3pm0_A 7 SKGKPPGPFAWPLIGNAAAVG--QAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFR 84 (507)
T ss_dssp -----------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHH
T ss_pred CCCCCcCCCCCCeeCchhhcC--ccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHH
Confidence 345688888899999999887 678999999999999999999999999999999999999998888998887655443
Q ss_pred HhhcCccceEeCcCCCCC
Q 046501 83 IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~gl~~~~~g~~W 100 (100)
....+ .+++++.+|+.|
T Consensus 85 ~~~~g-~~l~~~~~g~~w 101 (507)
T 3pm0_A 85 VVSGG-RSMAFGHYSEHW 101 (507)
T ss_dssp HGGGG-TCSSSSCSSHHH
T ss_pred hhcCC-CceEECCCChHH
Confidence 33323 577666547776
No 4
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.77 E-value=1e-18 Score=110.46 Aligned_cols=94 Identities=24% Similarity=0.447 Sum_probs=76.9
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
..++||+|+++|++||+.++.. ..++..+.+++++||+++++++++.++++++||++++++|.++...|++++......
T Consensus 8 ~~~lpPgP~~~PliG~~~~~~~-~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~~ 86 (476)
T 3e6i_A 8 KGKLPPGPFPLPIIGNLFQLEL-KNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFH 86 (476)
T ss_dssp --CCCCCCCCBTTTBTGGGCCT-TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGGG
T ss_pred CCCCCcCCCCcccccChhhhcc-ccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchhh
Confidence 4567888889999999999853 578899999999999999999999999999999999999998888888776544333
Q ss_pred HhhcCccceEeCcCCCCC
Q 046501 83 IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~gl~~~~~g~~W 100 (100)
.+. + .|+++++ |+.|
T Consensus 87 ~~~-~-~~l~~~~-g~~w 101 (476)
T 3e6i_A 87 AHR-D-RGIIFNN-GPTW 101 (476)
T ss_dssp GGT-T-SSSTTCC-STTH
T ss_pred eec-C-CCEEecC-CcHH
Confidence 332 2 2888887 9887
No 5
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.68 E-value=3.7e-17 Score=103.64 Aligned_cols=95 Identities=23% Similarity=0.378 Sum_probs=74.0
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
+.+.||+|+++|++||+..+.. .+++..+.+++++||+++++++++.++++++||+++++|+.++...|++++......
T Consensus 8 ~~~~pPgP~~~p~iG~~~~~~~-~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 1po5_A 8 KGKLPPGPSPLPVLGNLLQMDR-KGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVD 86 (476)
T ss_dssp -CCCCCCSCCBTTTBTGGGCCT-TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGC
T ss_pred CCCCCcCCCCCCccccHHhccC-CcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHH
Confidence 3456788888999999998842 578899999999999999999999999999999999999987777787665432222
Q ss_pred HhhcCccceEeCcCCCCC
Q 046501 83 IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~gl~~~~~g~~W 100 (100)
.... +.|+++++ |+.|
T Consensus 87 ~~~~-~~~l~~~~-g~~w 102 (476)
T 1po5_A 87 PIFQ-GYGVIFAN-GERW 102 (476)
T ss_dssp SCCS-SCCCCCSS-HHHH
T ss_pred hhcC-CCceEecC-CcHH
Confidence 2222 25888886 7766
No 6
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.67 E-value=8.3e-17 Score=102.04 Aligned_cols=95 Identities=24% Similarity=0.390 Sum_probs=74.5
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
+.+.||+|.++|++||+..+.. ..++..+.+++++||+++++++++.++++++||+++++|+.++...|++++......
T Consensus 8 ~~~~pPgP~~~p~iG~~~~~~~-~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 2fdv_A 8 KGKLPPGPTPLPFIGNYLQLNT-EQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFD 86 (476)
T ss_dssp CCBCCCCCCCBTTTBTGGGCCT-TBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHH
T ss_pred cCCCCCCCCCCcccccHhhcCC-cchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHh
Confidence 3356788888999999998842 568899999999999999999999999999999999999987777787665433222
Q ss_pred HhhcCccceEeCcCCCCC
Q 046501 83 IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~gl~~~~~g~~W 100 (100)
....+ .|+++++ |+.|
T Consensus 87 ~~~~~-~~l~~~~-g~~~ 102 (476)
T 2fdv_A 87 WVFKG-YGVVFSN-GERA 102 (476)
T ss_dssp HHHTT-CSSSSCC-HHHH
T ss_pred hhcCC-CCeEecC-chHH
Confidence 22223 5888876 7765
No 7
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.66 E-value=1.7e-17 Score=105.10 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=70.1
Q ss_pred CCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHC-CcccccCCchhHHHHhh
Q 046501 7 PEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTH-DKVFASRPKTLAMEIFG 85 (100)
Q Consensus 7 p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~-~~~~~~~~~~~~~~~~~ 85 (100)
+|+|+++|++||+..+. ..++..+.+++++||+++++++++.++++++||++++++|.++ ...|.+++........+
T Consensus 16 ~PGP~~~PliGn~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~~~~ 93 (485)
T 3nxu_A 16 IPGPTPLPFLGNILSYH--KGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMK 93 (485)
T ss_dssp CCCCCCBTTTBTGGGGG--GCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCGGGG
T ss_pred CCCCCCcCeecCcHHhh--cChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcccccccccc
Confidence 66677899999999987 5788899999999999999999999999999999999999877 56676665432222221
Q ss_pred cCccceEeCcCCCCC
Q 046501 86 YNFSMFGFSPYGSYW 100 (100)
Q Consensus 86 ~~~~gl~~~~~g~~W 100 (100)
.++++++ |+.|
T Consensus 94 ---~~l~~~~-g~~w 104 (485)
T 3nxu_A 94 ---SAISIAE-DEEW 104 (485)
T ss_dssp ---GSTTTCC-HHHH
T ss_pred ---cCccccC-CcHH
Confidence 4777776 7665
No 8
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.66 E-value=3.1e-17 Score=103.67 Aligned_cols=86 Identities=15% Similarity=0.245 Sum_probs=66.4
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhcCccce
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGYNFSMF 91 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~gl 91 (100)
++|++||++++. .+++.++.+++++||++|++++++.++|+++||+++++++.++...|+.++..........+ .|+
T Consensus 19 ~lP~iG~~~~~~--~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~~~g-~~~ 95 (461)
T 3ld6_A 19 PIPFLGHAIAFG--KSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFG-KGV 95 (461)
T ss_dssp SSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHHHHC-TTS
T ss_pred CcCeeeeHHHhh--hCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhccCC-Ccc
Confidence 489999999887 67999999999999999999999999999999999999998888788766543322111112 455
Q ss_pred EeCcCCCCC
Q 046501 92 GFSPYGSYW 100 (100)
Q Consensus 92 ~~~~~g~~W 100 (100)
++..+|+.|
T Consensus 96 ~~~~~~~~~ 104 (461)
T 3ld6_A 96 AYDVPNPVF 104 (461)
T ss_dssp GGGSCHHHH
T ss_pred ccCCCcHHH
Confidence 554336554
No 9
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=101.54 Aligned_cols=94 Identities=27% Similarity=0.550 Sum_probs=73.6
Q ss_pred CCCC--CCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHH
Q 046501 4 RRAP--EAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAM 81 (100)
Q Consensus 4 ~~~p--~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~ 81 (100)
+++| |+|.++|++|++..+. .+++..+.+++++||+++++++++.++++++||+++++++.++...|++++.....
T Consensus 13 ~~lp~~PgP~~~p~~G~~~~~~--~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~ 90 (495)
T 2hi4_A 13 KGLKSPPEPWGWPLLGHVLTLG--KNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTS 90 (495)
T ss_dssp TTCBCCCCCCCBTTTBTHHHHT--TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHH
T ss_pred CCCCCCCCCCCCcceeeHHhcC--ccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHH
Confidence 3455 7787899999998886 56888999999999999999999999999999999999998777778777654333
Q ss_pred HHhhcCccceEeC-cCCCCC
Q 046501 82 EIFGYNFSMFGFS-PYGSYW 100 (100)
Q Consensus 82 ~~~~~~~~gl~~~-~~g~~W 100 (100)
..+.. +.|++++ ++|+.|
T Consensus 91 ~~~~~-~~~l~~~~~~g~~w 109 (495)
T 2hi4_A 91 TLITD-GQSLTFSTDSGPVW 109 (495)
T ss_dssp HTSTT-SCCTTTSSCCSHHH
T ss_pred HHhcC-CCCEEEcCCCChHH
Confidence 32222 2577777 337766
No 10
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.63 E-value=2e-16 Score=100.56 Aligned_cols=97 Identities=25% Similarity=0.448 Sum_probs=72.1
Q ss_pred CCCCCCCCcccceeccccccCCCC-ChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPE-PPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAM 81 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~-~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~ 81 (100)
.++.||+|+++|++|++..+.... .++..+.+++++||+++++++++.++++++||+++++++.++...|++++.....
T Consensus 10 ~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~ 89 (481)
T 3czh_A 10 PMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLF 89 (481)
T ss_dssp --CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHH
T ss_pred CCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHH
Confidence 346688888899999998775211 2788999999999999999999999999999999999998777788777644333
Q ss_pred HHhhcCccceEeCcCCCCC
Q 046501 82 EIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 82 ~~~~~~~~gl~~~~~g~~W 100 (100)
..+... .|+++..+|+.|
T Consensus 90 ~~~~~~-~~~~~~~~g~~w 107 (481)
T 3czh_A 90 MKMTKM-GGLLNSRYGRGW 107 (481)
T ss_dssp HHHHTT-CSSTTCCSSHHH
T ss_pred HhhcCC-CCeEeCCCChHH
Confidence 333322 465543337766
No 11
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.62 E-value=5.9e-17 Score=102.69 Aligned_cols=94 Identities=26% Similarity=0.421 Sum_probs=66.7
Q ss_pred CCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHH
Q 046501 4 RRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEI 83 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 83 (100)
.+.||+|+++|++|++..+.. .+++..+.+++++||+++++++++.++++++||+++++|+.++...|++++.......
T Consensus 10 ~~~pPgP~~~p~iG~~~~~~~-~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~ 88 (477)
T 1r9o_A 10 GKLPPGPTPLPVIGNILQIGI-KDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAER 88 (477)
T ss_dssp CBCCCCSSSCC-----CCBCH-HHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCT
T ss_pred CCCCCCCCCCceeccHhhcCC-CChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhh
Confidence 356788888999999988742 4578899999999999999999999999999999999999877777776543221111
Q ss_pred hhcCccceEeCcCCCCC
Q 046501 84 FGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 84 ~~~~~~gl~~~~~g~~W 100 (100)
...+ .|+++++ |+.|
T Consensus 89 ~~~~-~~l~~~~-g~~w 103 (477)
T 1r9o_A 89 ANRG-FGIVFSN-GKKW 103 (477)
T ss_dssp TTCT-TSSTTCC-HHHH
T ss_pred ccCC-CceEecC-ChHH
Confidence 1122 5777776 7665
No 12
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.62 E-value=1.5e-16 Score=100.44 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=61.1
Q ss_pred CCCCCC-CcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 4 RRAPEA-GGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 4 ~~~p~~-p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
.+.||+ |.++|++||++.+. .+++.++.+++++||+++++++++.+++++++++++++++.++...+..+
T Consensus 10 ~~~PPg~P~~lP~iG~l~~~~--~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~ 80 (461)
T 3i3k_A 10 VKSPPYIFSPIPFLGHAIAFG--KSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAE 80 (461)
T ss_dssp CCCCCBCCCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESH
T ss_pred CCCCCCCCCCCCccccHHhhc--cCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccc
Confidence 455776 77899999999887 57889999999999999999999999999999999999998777666543
No 13
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.62 E-value=1.2e-16 Score=100.38 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=69.7
Q ss_pred CCCCC-CcccceeccccccCCCCChHHHHHHHHHHhC-CeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 5 RAPEA-GGAWPVTGHLHLLGGPEPPHRVLGAMADKYG-PIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 5 ~~p~~-p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg-~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
++||+ |.++|++||+..+. .+++..+.+++++|| +++++++++.++++++||+++++++.++...|++++......
T Consensus 3 ~~PPg~p~~~P~iG~~~~~~--~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~ 80 (450)
T 3gw9_A 3 KLPPVYPVTVPILGHIIQFG--KSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMV 80 (450)
T ss_dssp SCCCBCCCCSTTTBTHHHHH--HCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGH
T ss_pred CCCCCCCCCcchhccHHHHc--cCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHH
Confidence 44555 55599999999887 578899999999999 999999999999999999999999988777887765443322
Q ss_pred HhhcCccceEeCcCCCCC
Q 046501 83 IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~gl~~~~~g~~W 100 (100)
.... .|++++.+|+.|
T Consensus 81 ~~~g--~~~~~~~~~~~~ 96 (450)
T 3gw9_A 81 PVFG--EGVAYAAPYPRM 96 (450)
T ss_dssp HHHC--TTSGGGSCHHHH
T ss_pred HHhc--CCcccCCCcHHH
Confidence 2221 455554325544
No 14
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.61 E-value=6.2e-16 Score=98.30 Aligned_cols=94 Identities=19% Similarity=0.171 Sum_probs=69.4
Q ss_pred CCCCCCCCCcc-cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCC-cccccCCchh
Q 046501 2 KKRRAPEAGGA-WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHD-KVFASRPKTL 79 (100)
Q Consensus 2 ~~~~~p~~p~~-~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~-~~~~~~~~~~ 79 (100)
+..+.||+|++ +|++||+..+. .+++.++.+++++||+++++.+++.+++++++|+++++++.+.. ..+..+....
T Consensus 10 ~~~~~PPgp~~~lPliG~~~~~~--~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~~ 87 (491)
T 3v8d_A 10 RQTGEPPLENGLIPYLGCALQFG--ANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFAL 87 (491)
T ss_dssp CCTTSCCEEEEEESSTTTTGGGT--CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHHH
T ss_pred cCCCCCCCCCCCcceeccHHHHh--cCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHHH
Confidence 34566888887 69999999997 68999999999999999999999999999999999999996543 1233322222
Q ss_pred HHHHhhcCccceEeCcCCCCC
Q 046501 80 AMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 80 ~~~~~~~~~~gl~~~~~g~~W 100 (100)
....++.+ .+...+ |+.|
T Consensus 88 ~~~~~g~~--~~~~~~-g~~~ 105 (491)
T 3v8d_A 88 SAKAFGHR--SIDPMD-GNTT 105 (491)
T ss_dssp HHHHHTCC--CCCGGG-SSBC
T ss_pred HHHhcCCc--cccccc-chhH
Confidence 33334322 333445 7877
No 15
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.59 E-value=5.7e-16 Score=98.53 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=69.5
Q ss_pred CCCCCCCCcccceeccccccCC--CCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGG--PEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLA 80 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~--~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~ 80 (100)
+++.||+|+++|++||+..+.. .......+.+++++||+++++++++.++++++||+++++++.. ..|++++....
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~ 120 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKL 120 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHH
T ss_pred ccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhh
Confidence 3456888888999999987641 0134568889999999999999999999999999999999953 46766654332
Q ss_pred -HHHhhcCccceEeCcCCCCC
Q 046501 81 -MEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 81 -~~~~~~~~~gl~~~~~g~~W 100 (100)
....+..+.|++++.+|+.|
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~w 141 (503)
T 3s79_A 121 GLQCIGMHEKGIIFNNNPELW 141 (503)
T ss_dssp HHHHHTCTTSSSTTCCCHHHH
T ss_pred hhhhhccCCCceeeCCCccHH
Confidence 23333334576665546665
No 16
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.57 E-value=2.1e-15 Score=95.42 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=70.1
Q ss_pred CCCCcccceeccccccC---CCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchh---H
Q 046501 7 PEAGGAWPVTGHLHLLG---GPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTL---A 80 (100)
Q Consensus 7 p~~p~~~p~lg~~~~~~---~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~---~ 80 (100)
+|+|+++|++||+..+. ....++..+.+++++||+++++++++.++|+++||+++++|+.+ ...|.+++... .
T Consensus 26 ~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~-~~~~~~r~~~~~~~~ 104 (482)
T 3k9v_A 26 LPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRT-ESAHPQRLEIKPWKA 104 (482)
T ss_dssp CCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHT-CCSSCCCCCCHHHHH
T ss_pred CCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHh-cCCCCCCCCchHHHH
Confidence 66777899999998763 11357889999999999999999999999999999999999987 45777765432 1
Q ss_pred HHHhhcCccceEeCcCCCCC
Q 046501 81 MEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 81 ~~~~~~~~~gl~~~~~g~~W 100 (100)
.......+.|+++++ |+.|
T Consensus 105 ~~~~~~~~~~l~~~~-g~~w 123 (482)
T 3k9v_A 105 YRDHRNEAYGLMILE-GQEW 123 (482)
T ss_dssp HHHHHTCCCCTTTCC-HHHH
T ss_pred HHHhcCCCCCceeCC-CchH
Confidence 111222236888887 8776
No 17
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.56 E-value=2.8e-15 Score=95.13 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=55.7
Q ss_pred CCCCCCCcc-cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCC
Q 046501 4 RRAPEAGGA-WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHD 69 (100)
Q Consensus 4 ~~~p~~p~~-~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~ 69 (100)
.+.||+|++ +|++||+.++. ..++..+.+++++||+++++++++.++++++||+++++++.+..
T Consensus 12 ~~~pPgp~~~~P~iG~~~~~~--~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~ 76 (491)
T 3dax_A 12 TGEPPLENGLIPYLGCALQFG--ANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGK 76 (491)
T ss_dssp TTCCCEEEEEESCTTTTGGGT--CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCT
T ss_pred CCCCCcCCCcccchhhHHHHh--hCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCc
Confidence 345666666 79999999887 56888999999999999999999999999999999999996544
No 18
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.53 E-value=2.2e-15 Score=95.90 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCCCCCCCcc-cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCc
Q 046501 3 KRRAPEAGGA-WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDK 70 (100)
Q Consensus 3 ~~~~p~~p~~-~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~ 70 (100)
..+.||+|++ +|++||+..+. .+++..+.+++++||++|.+++++.++++++||+++++++.++..
T Consensus 16 ~~~~PPgp~~~~P~iG~~~~~~--~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~ 82 (498)
T 3b6h_A 16 RPGEPPLDLGSIPWLGYALDFG--KDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRT 82 (498)
T ss_dssp CTTCCCEECCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTT
T ss_pred CCCCCCCCCCCCcchhhHHHhc--cCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccc
Confidence 3456777767 89999999886 468899999999999999999999999999999999999976553
No 19
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.50 E-value=1.1e-14 Score=92.24 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=56.9
Q ss_pred CCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCc-hhHHH
Q 046501 4 RRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPK-TLAME 82 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~-~~~~~ 82 (100)
+.+||+|.++|++||+..+. .++..++.++++ ||+++++++++.++++++||+++++++.++ .|..+.. .....
T Consensus 22 ~eppPgP~~~P~iG~~~~~~--~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~ 96 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRLA--RDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLE 96 (467)
T ss_dssp CBCCEECCCCSTTHHHHHHH--HCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC-----------
T ss_pred CCCCCCCCCCCcccchHHhc--cCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHH
Confidence 56788888999999999887 578888988887 999999999999999999999999999765 5533322 22221
Q ss_pred HhhcCccceEeCcCCCCC
Q 046501 83 IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~gl~~~~~g~~W 100 (100)
.+... .++++++ |+.|
T Consensus 97 ~~~g~-~~l~~~d-g~~h 112 (467)
T 3dbg_A 97 GLLGK-EGVATAN-GPLH 112 (467)
T ss_dssp ------------------
T ss_pred HhcCC-CCcccCC-cHHH
Confidence 12221 4788887 8887
No 20
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.50 E-value=1.1e-13 Score=87.53 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=62.0
Q ss_pred CCCCC-CcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHH
Q 046501 5 RAPEA-GGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEI 83 (100)
Q Consensus 5 ~~p~~-p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 83 (100)
+.||+ |.++|++||+..+. .++...+.+++++||+++.+++++.++++++||+++++++.++...|+.+........
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~--~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~ 81 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFR--TDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTP 81 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHT--TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHH
T ss_pred CCCCCCCCCCCCccCHHHHh--hChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHh
Confidence 34554 77899999999886 5788999999999999999999999999999999999999876667766543322211
Q ss_pred hhcCccceEeCcCCCCC
Q 046501 84 FGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 84 ~~~~~~gl~~~~~g~~W 100 (100)
.. + .+++ .+ |+.|
T Consensus 82 ~~-g-~~~~-~~-~~~~ 94 (455)
T 2cib_A 82 IF-G-EGVV-FD-ASPE 94 (455)
T ss_dssp HH-C-------------
T ss_pred hc-C-Cccc-cC-cHHH
Confidence 11 1 3543 45 7766
No 21
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.49 E-value=6e-15 Score=93.73 Aligned_cols=90 Identities=17% Similarity=0.303 Sum_probs=67.6
Q ss_pred CCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHH
Q 046501 4 RRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEI 83 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 83 (100)
.+.||+|++ +..+.. ..++..+.+++++||+++++++++.++++++||+++++++.++...|++++.......
T Consensus 28 ~~lPPGP~~------l~~~~~-~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~~~ 100 (496)
T 3qz1_A 28 LHLPPLVPG------FLHLLQ-PNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKL 100 (496)
T ss_dssp -CCCCBCSC------SCTTSS-SCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTTTTT
T ss_pred CCCCcCCcc------ccccCC-CcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcchHHH
Confidence 355676654 444432 5789999999999999999999999999999999999999988888888765543322
Q ss_pred hhcCccceEeCcCCCCC
Q 046501 84 FGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 84 ~~~~~~gl~~~~~g~~W 100 (100)
...+..|++++++|+.|
T Consensus 101 ~~~~~~~l~~~~~g~~w 117 (496)
T 3qz1_A 101 VSQRCQDISLGDYSLLW 117 (496)
T ss_dssp SCTTCCCSSSSCCSHHH
T ss_pred hcCCCCceEECCCCHHH
Confidence 22232388888657766
No 22
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.47 E-value=1.2e-14 Score=91.54 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=67.6
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
+.+.||+|+++|++||+..+. .++. .+.+++++||+++++++++.+.++++||+++++++.++...|+.+.......
T Consensus 10 ~~~~pPgp~~~P~iG~~~~~~--~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~ 86 (444)
T 2ve3_A 10 SLPIPPGDFGLPWLGETLNFL--NDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPLSTRI 86 (444)
T ss_dssp CCCCCCCCCCBTTTBTHHHHH--HCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCHHHHH
T ss_pred CCCCCCCCCCCCccccHHHHh--cCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhHHHHH
Confidence 445678888899999998875 2345 7779999999999999888899999999999999977655666432222222
Q ss_pred HhhcCccceEeCcCCCCC
Q 046501 83 IFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ~~~~~~~gl~~~~~g~~W 100 (100)
.++ . .++++++ |+.|
T Consensus 87 ~~g-~-~~l~~~~-g~~~ 101 (444)
T 2ve3_A 87 LLG-P-NALATQM-GEIH 101 (444)
T ss_dssp HHC-T-TSGGGCC-HHHH
T ss_pred HhC-c-cccccCC-chHH
Confidence 332 2 3777766 7655
No 23
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.45 E-value=5.6e-15 Score=93.44 Aligned_cols=64 Identities=23% Similarity=0.307 Sum_probs=55.9
Q ss_pred CCCCCCCcc-cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCC
Q 046501 4 RRAPEAGGA-WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHD 69 (100)
Q Consensus 4 ~~~p~~p~~-~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~ 69 (100)
.+.||+|++ +|++||+..+. .+++..+.+++++||+++.+++++.++++++||+++++++.+..
T Consensus 17 ~~~pPgp~~~~P~iG~~~~~~--~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~ 81 (475)
T 3b98_A 17 RNEPPLDKGMIPWLGHALEFG--KDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVA 81 (475)
T ss_dssp TTCCCEECCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTT
T ss_pred CCCCCCCCCCcchHHhHHHHh--hCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCcc
Confidence 455777766 89999999886 56899999999999999999999999999999999999996543
No 24
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.40 E-value=5.9e-13 Score=84.48 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=64.1
Q ss_pred CCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhc
Q 046501 7 PEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGY 86 (100)
Q Consensus 7 p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~ 86 (100)
+|+|+++|++||+.++.. ..++..+.+++++||+++++++++.+.++++||+++++++.+ ..|.+............
T Consensus 5 ~PGP~~~p~iG~l~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f~~~~~~~~~~~~~~ 81 (470)
T 2ij2_A 5 MPQPKTFGELKNLPLLNT-DKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRFDKNLSQALKFVRDF 81 (470)
T ss_dssp CCCCCCCGGGTTGGGGCS-SCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTEEECCCHHHHHHHHH
T ss_pred CCCCCCCCccccHHHHhc-ccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCcCcCchhHHHHHHHh
Confidence 566778999999998863 467888899999999999999999999999999999999953 34533222111111111
Q ss_pred CccceEeC-cCCCCC
Q 046501 87 NFSMFGFS-PYGSYW 100 (100)
Q Consensus 87 ~~~gl~~~-~~g~~W 100 (100)
.+.|++++ .+|+.|
T Consensus 82 ~~~~l~~~~~~g~~w 96 (470)
T 2ij2_A 82 AGDGLFTSWTHEKNW 96 (470)
T ss_dssp HTTSGGGSCTTSHHH
T ss_pred cCCceEEcCCCchHH
Confidence 12477766 236665
No 25
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.39 E-value=6.6e-14 Score=88.32 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=60.0
Q ss_pred CCCCCCCCCcccceecccc-ccCCCCChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHHCCcccccCCchh
Q 046501 2 KKRRAPEAGGAWPVTGHLH-LLGGPEPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTTHDKVFASRPKTL 79 (100)
Q Consensus 2 ~~~~~p~~p~~~p~lg~~~-~~~~~~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~ 79 (100)
+.++.||+|+++|++|++. .+. .+++..+.++ ++||+++++++ ++.++++++|++++++++.++ .|++++...
T Consensus 23 ~~~~~~PGP~~~p~lG~~~~~~~--~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~ 97 (436)
T 2cd8_A 23 RTQQGTTASPPVLDLGALGQDFA--ADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNS 97 (436)
T ss_dssp -----------CCBHHHHHHHHH--HCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGC
T ss_pred hhccCCCCCCccccCCCCCcccc--cChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccc
Confidence 3456677888899999986 444 4678888899 99999999997 778999999999999999765 576654311
Q ss_pred HHHH----hhcCccceEeCcCCCCC
Q 046501 80 AMEI----FGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 80 ~~~~----~~~~~~gl~~~~~g~~W 100 (100)
.... .... .++++.+ |+.|
T Consensus 98 ~~~~~~~~~~~~-~~l~~~d-g~~h 120 (436)
T 2cd8_A 98 TTPLTEAEAALN-HNMLESD-PPRH 120 (436)
T ss_dssp SSCCCTTGGGTC-CSGGGCC-TTHH
T ss_pred cccccccccccc-ccccccC-chHH
Confidence 1110 1122 5777776 8876
No 26
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.28 E-value=2.4e-12 Score=81.65 Aligned_cols=91 Identities=16% Similarity=0.077 Sum_probs=64.5
Q ss_pred CCCCcccceeccccccC---CCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHH--
Q 046501 7 PEAGGAWPVTGHLHLLG---GPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAM-- 81 (100)
Q Consensus 7 p~~p~~~p~lg~~~~~~---~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~-- 81 (100)
+|||+..++. ++..+. ....++..+.+++++||+++++++++.+.|+++||+++++|+.++ ..|++++.....
T Consensus 11 ~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r~~~~~~~~ 88 (487)
T 3n9y_A 11 IPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPERFLIPPWVA 88 (487)
T ss_dssp SCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCCCCCHHHHH
T ss_pred CCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCCCCCcHHHH
Confidence 5666555554 555442 113577889999999999999999999999999999999999765 467777543221
Q ss_pred -HHhhcCccceEeCcCCCCC
Q 046501 82 -EIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 82 -~~~~~~~~gl~~~~~g~~W 100 (100)
......+.|+++++ |+.|
T Consensus 89 ~~~~~~~~~~l~~~~-g~~w 107 (487)
T 3n9y_A 89 YHQYYQRPIGVLLKK-SAAW 107 (487)
T ss_dssp HHHHTTCCCCGGGCC-HHHH
T ss_pred HHHHccccCCCccCC-cHHH
Confidence 11222235788776 7766
No 27
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.14 E-value=3.5e-12 Score=79.32 Aligned_cols=82 Identities=15% Similarity=0.029 Sum_probs=63.1
Q ss_pred cccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCC-chhHHHHhhcCcc
Q 046501 11 GAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRP-KTLAMEIFGYNFS 89 (100)
Q Consensus 11 ~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (100)
...|++||+..+. .+++..+.+++++||++++ ++++.++++++||+++++++.++ .|++++ .......+. + .
T Consensus 5 ~~~p~iGnl~~~~--~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~-g-~ 77 (389)
T 1n97_A 5 SLREAWPYLKDLQ--QDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT-G-R 77 (389)
T ss_dssp CHHHHHHHHHHHH--HCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH-C-S
T ss_pred ccccccccHHHHh--hChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh-C-C
Confidence 3479999998886 4688899999999999999 88999999999999999999765 777765 222222222 2 5
Q ss_pred ceEeCcCCCCC
Q 046501 90 MFGFSPYGSYW 100 (100)
Q Consensus 90 gl~~~~~g~~W 100 (100)
++++++ |+.|
T Consensus 78 ~l~~~~-g~~h 87 (389)
T 1n97_A 78 GLLTDW-GESW 87 (389)
T ss_dssp STTTCC-HHHH
T ss_pred ccccCC-cHHH
Confidence 777776 7665
No 28
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.03 E-value=1.7e-10 Score=72.00 Aligned_cols=88 Identities=10% Similarity=0.015 Sum_probs=55.5
Q ss_pred CCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-CccEEEEcCHHHHHHHHHHCC-cccccCCchhH---
Q 046501 6 APEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-VNRALVVSNWEMAKECLTTHD-KVFASRPKTLA--- 80 (100)
Q Consensus 6 ~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-~~~~v~i~~p~~~~~il~~~~-~~~~~~~~~~~--- 80 (100)
.||+|+++|++|++.. +++..+.+++ +||+++++.+. +.+.+++++++.++++|.++. ..+..++....
T Consensus 2 ~pPGp~~~P~~g~~~~-----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~ 75 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP-----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSA 75 (404)
T ss_dssp ----CCBSSCCCSSTT-----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSH
T ss_pred CCCCCCCCCCCCCcCC-----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccc
Confidence 4788888999999764 4566777775 69999999874 567778999999999997653 23333322111
Q ss_pred H-HHhhcCccceEeCcCCCCC
Q 046501 81 M-EIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 81 ~-~~~~~~~~gl~~~~~g~~W 100 (100)
. .....+..++++++ |+.|
T Consensus 76 ~~~~~~~~~~~l~~~~-g~~h 95 (404)
T 1jfb_A 76 SGKQAAKAKPTFVDMD-PPEH 95 (404)
T ss_dssp HHHHHTTSCCCGGGCC-TTHH
T ss_pred cccchhcccCcccccC-chhH
Confidence 1 11112224677777 8776
No 29
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.00 E-value=3.1e-10 Score=71.03 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=58.9
Q ss_pred CCCCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEE----e-CC-ccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 3 KRRAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIK----M-GV-NRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 3 ~~~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~----~-~~-~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
...+||+|+++|+. +. .+++..+.++ ++||++++++ + ++ .++++++||+++++++.++. .|++++
T Consensus 8 ~~~lppgp~~~p~~-----~~--~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~-~~~~~~ 78 (406)
T 1ued_A 8 VAPLLREPANFQLR-----TN--CDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE-HFTTRP 78 (406)
T ss_dssp CCCEEECCTTTTCE-----ET--TEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS-SEECCC
T ss_pred CCCCcccCcccCCC-----CC--CCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc-cccccc
Confidence 34567767778876 33 4678888899 9999999999 6 78 89999999999999993333 355544
Q ss_pred chhHH--HHh---hcCccceEeCcCCCCC
Q 046501 77 KTLAM--EIF---GYNFSMFGFSPYGSYW 100 (100)
Q Consensus 77 ~~~~~--~~~---~~~~~gl~~~~~g~~W 100 (100)
..... ... ... .++++++ |+.|
T Consensus 79 ~~~~~~~~~~~~~~~~-~~l~~~~-g~~~ 105 (406)
T 1ued_A 79 QFTQSKSGAHVEAQFV-GQISTYD-PPEH 105 (406)
T ss_dssp CC---------CGGGT-TCGGGCC-TTHH
T ss_pred cccccccccccccccc-cccccCC-CHHH
Confidence 31111 010 012 4777776 8876
No 30
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=98.96 E-value=8.9e-11 Score=73.51 Aligned_cols=83 Identities=11% Similarity=-0.004 Sum_probs=58.2
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhC-CeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCch--hHHHHhhcCc
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYG-PIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKT--LAMEIFGYNF 88 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg-~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~--~~~~~~~~~~ 88 (100)
+.|++||+..+. .+++.++.+++++|| +++++.+++.++++++++++++.++ . ...|+.+... .....+.+.
T Consensus 7 g~P~lG~~~~~~--~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~g~- 81 (417)
T 1izo_A 7 HDKSLDNSLTLL--KEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSLFGV- 81 (417)
T ss_dssp BCCCTTHHHHHH--HHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTTTCT-
T ss_pred CCCccchHHHHh--hCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhhccc-
Confidence 359999999886 568889999999998 8999998888999999999998544 2 3456543221 111111111
Q ss_pred cceEeCcCCCCC
Q 046501 89 SMFGFSPYGSYW 100 (100)
Q Consensus 89 ~gl~~~~~g~~W 100 (100)
.++++++ |+.|
T Consensus 82 ~~l~~~d-g~~h 92 (417)
T 1izo_A 82 NAIQGMD-GSAH 92 (417)
T ss_dssp TCGGGCC-HHHH
T ss_pred cceeecC-ChHH
Confidence 3677666 7655
No 31
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=98.85 E-value=6e-10 Score=69.74 Aligned_cols=81 Identities=9% Similarity=0.004 Sum_probs=56.2
Q ss_pred ceeccccccCCCCChHHHHHHHHHHh-CCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchh--HHHHhhcCccc
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKY-GPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTL--AMEIFGYNFSM 90 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~y-g~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~--~~~~~~~~~~g 90 (100)
|++||+..+. .++..++.+++++| |+++++.+++.+++++++++.++ ++.+ ...|+.+.... ....+... .+
T Consensus 8 P~iG~~~~~~--~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~-~~~f~~~~~~~~~~~~~~~g~-~~ 82 (415)
T 3awm_A 8 KGPDETLSLL--ADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYD-TTRFEREGAMPVAIQKTLLGQ-GG 82 (415)
T ss_dssp -CCCCHHHHH--HSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTC-TTTEECTTCSCHHHHTTTSCS-SS
T ss_pred CccchHHHHH--hChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhc-ccccccccccchhhhhhccCC-cc
Confidence 8999998876 46788999999999 79999998888999999999986 6643 34665543211 11111111 36
Q ss_pred eEeCcCCCCC
Q 046501 91 FGFSPYGSYW 100 (100)
Q Consensus 91 l~~~~~g~~W 100 (100)
+++++ |+.|
T Consensus 83 l~~~d-g~~h 91 (415)
T 3awm_A 83 VQGLD-GETH 91 (415)
T ss_dssp GGGCC-HHHH
T ss_pred eeecC-cHHH
Confidence 66666 6655
No 32
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=98.85 E-value=5.9e-10 Score=70.95 Aligned_cols=62 Identities=10% Similarity=0.100 Sum_probs=49.1
Q ss_pred CCCCCCCcccceeccccccC---CCCChHHHHHHHHHHhCC-eEEEEeCCccE-------EEEcCHHHHHHHH
Q 046501 4 RRAPEAGGAWPVTGHLHLLG---GPEPPHRVLGAMADKYGP-IFTIKMGVNRA-------LVVSNWEMAKECL 65 (100)
Q Consensus 4 ~~~p~~p~~~p~lg~~~~~~---~~~~~~~~~~~~~~~yg~-~~~~~~~~~~~-------v~i~~p~~~~~il 65 (100)
.+.||+|.++|++|++..+. ....+..++.++.++||+ ||++++++.++ +++.+++..+.++
T Consensus 27 ~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~ 99 (495)
T 3dsk_A 27 IRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLF 99 (495)
T ss_dssp BCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGG
T ss_pred CCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeec
Confidence 45688888999999997653 115788999999999999 99999998888 6667776655554
No 33
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=98.82 E-value=4.3e-09 Score=65.96 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=44.7
Q ss_pred CCCCcccceeccccccCCCCChHHHHHHHHHHh-CCeEEEEe-CCccEEEEcCHHHHHHHHHHC
Q 046501 7 PEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKY-GPIFTIKM-GVNRALVVSNWEMAKECLTTH 68 (100)
Q Consensus 7 p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~y-g~~~~~~~-~~~~~v~i~~p~~~~~il~~~ 68 (100)
||+|+..|.+.....+. .+++..+.++ ++| |+++++.+ ++.++++++|+++++++|.++
T Consensus 7 ~~~~~~~P~~~~~~~~~--~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~ 67 (412)
T 2zbx_A 7 TPQTTDAPAFPSNRSCP--YQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP 67 (412)
T ss_dssp -CCCCSSCBSSCCCSST--TSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT
T ss_pred CCCCCCCCCCCCCchhc--cChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc
Confidence 44444567553223344 5678889999 788 99999997 789999999999999999753
No 34
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=98.81 E-value=4.7e-09 Score=66.19 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
..++..+.+|+++||+++++++++.+.++++||+++++++.+ ..|.++
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~ 57 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKD 57 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCC
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--cccccc
Confidence 568889999999999999999999999999999999999953 344444
No 35
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=98.76 E-value=2e-08 Score=63.09 Aligned_cols=92 Identities=5% Similarity=-0.052 Sum_probs=60.1
Q ss_pred CCCCCCCCCccccee--ccccccCC---CCChHHHHHHHHHHhC--CeEEEE-eCCccEEEEcCHHHHHHHHHHCCcccc
Q 046501 2 KKRRAPEAGGAWPVT--GHLHLLGG---PEPPHRVLGAMADKYG--PIFTIK-MGVNRALVVSNWEMAKECLTTHDKVFA 73 (100)
Q Consensus 2 ~~~~~p~~p~~~p~l--g~~~~~~~---~~~~~~~~~~~~~~yg--~~~~~~-~~~~~~v~i~~p~~~~~il~~~~~~~~ 73 (100)
++.++||+|...|.. +.+-.+.. ..+++..+.+++ +|| +++++. ++ +.++++|++++++++. +...|+
T Consensus 8 ~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~-~~~~f~ 83 (415)
T 2zwu_A 8 SNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYE-DYRHFS 83 (415)
T ss_dssp ---CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHH-CTTTEE
T ss_pred CccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHc-CccccC
Confidence 456778888777764 43321111 135788888885 799 999988 55 6999999999999996 455787
Q ss_pred cCC-chhHHHHhhcCccc-eEeCcCCCCC
Q 046501 74 SRP-KTLAMEIFGYNFSM-FGFSPYGSYW 100 (100)
Q Consensus 74 ~~~-~~~~~~~~~~~~~g-l~~~~~g~~W 100 (100)
+++ ....... ..+ .+ +++++ |+.|
T Consensus 84 ~~~~~~~~~~~-~~~-~~~l~~~~-g~~~ 109 (415)
T 2zwu_A 84 SECPFIPREAG-EAY-DFIPTSMD-PPEQ 109 (415)
T ss_dssp TTSCSSSHHHH-HHC-CCTTTTCC-TTTT
T ss_pred CCcccCCCCcc-ccc-cccCccCC-CcHH
Confidence 775 2222111 112 46 88887 9888
No 36
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=98.76 E-value=9.6e-09 Score=64.81 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHhCCeEEEE--------eCCccEEEEcCHHHHHHHHHHCCcccccCCchhHH--------HHhhcCcc
Q 046501 26 EPPHRVLGAMADKYGPIFTIK--------MGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAM--------EIFGYNFS 89 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~--------~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~--------~~~~~~~~ 89 (100)
.+++..+.++ ++||+++++. +|+.+++++++++.++++|. +...|++++..... ......+.
T Consensus 37 ~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~-~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~ 114 (433)
T 3ivy_A 37 RLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISR-HSDVFSSYENGVIPRFKNDIAREDIEVQRF 114 (433)
T ss_dssp CCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHH-CTTTEESTTTCSCCCCCTTCCHHHHHGGGG
T ss_pred CCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHc-ChhhccCCcccccccccccccccccccccC
Confidence 4688888888 7899999998 44579999999999999995 44667766532211 11112225
Q ss_pred ceEeCcCCCCC
Q 046501 90 MFGFSPYGSYW 100 (100)
Q Consensus 90 gl~~~~~g~~W 100 (100)
++++++ |+.|
T Consensus 115 ~l~~~d-g~~h 124 (433)
T 3ivy_A 115 VMLNMD-APHH 124 (433)
T ss_dssp SGGGCC-TTHH
T ss_pred CccccC-hHHH
Confidence 788777 8876
No 37
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=98.73 E-value=7.8e-09 Score=64.69 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=58.2
Q ss_pred CCCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEe-CCcc-EEEEcCHHHHHHHHHHCCcccccCCchhHHH
Q 046501 5 RAPEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKM-GVNR-ALVVSNWEMAKECLTTHDKVFASRPKTLAME 82 (100)
Q Consensus 5 ~~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~-~~~~-~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 82 (100)
..+++++.+|+.++ .. .+++..+.+++ +||+++++.+ ++.+ +++++|++.++++|.+ ..|++++......
T Consensus 8 ~~~~~~~~~p~~~~---~~--~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~ 79 (406)
T 1s1f_A 8 QAVPPVRDWPAVDL---PG--SDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQV 79 (406)
T ss_dssp CCSCCEEECCCCCC---CT--TCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTB
T ss_pred hhccCCCCCCCCcc---cc--cCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCc
Confidence 44555555777665 22 46777888875 7999999986 5665 9999999999999974 4676654321110
Q ss_pred ----H-hhcCccceEeCcCCCCC
Q 046501 83 ----I-FGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 83 ----~-~~~~~~gl~~~~~g~~W 100 (100)
. ....+.++++++ |+.|
T Consensus 80 ~~~~~~~~~~~~~l~~~d-g~~h 101 (406)
T 1s1f_A 80 TRLAPHFIPARGAVGFLD-PPDH 101 (406)
T ss_dssp CBSSSSCSSCTTSGGGCC-TTHH
T ss_pred ccccccccccccccccCC-chHH
Confidence 0 111136888887 8876
No 38
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=98.71 E-value=3.4e-08 Score=61.61 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCch-------hHHHHhhcCccceEeCcCCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKT-------LAMEIFGYNFSMFGFSPYGS 98 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~-------~~~~~~~~~~~gl~~~~~g~ 98 (100)
.+++..+.++ ++||+++++.+++.+++++++++.++++|.+. ..|++++.. ......+ .++++++ |+
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~-g~ 86 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQN---QMMLFQN-QP 86 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHH---TSGGGCC-TT
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhh---cchhhcC-Cc
Confidence 4677888887 58999999999999999999999999999865 577766531 1122222 5787777 88
Q ss_pred CC
Q 046501 99 YW 100 (100)
Q Consensus 99 ~W 100 (100)
.|
T Consensus 87 ~h 88 (404)
T 3ejb_B 87 DH 88 (404)
T ss_dssp HH
T ss_pred hH
Confidence 76
No 39
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=98.71 E-value=6e-09 Score=64.62 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCC----ccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhcCccceEeCcCCCCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGV----NRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~----~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
.+++..+.++ ++||+++++.+++ .++++++||+++++++ ++...|++++...........+.+++..+ |+.|
T Consensus 12 ~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-g~~~ 87 (384)
T 3oo3_A 12 LDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADRALLPGILQAYD-PPDH 87 (384)
T ss_dssp TEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC-----CCCTTCGGGCC-TTHH
T ss_pred cChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCccccccccccccccccccCC-ChhH
Confidence 5688888888 5999999999876 8999999999999999 55678887765432222122224566665 7766
No 40
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=98.70 E-value=8.5e-09 Score=64.88 Aligned_cols=91 Identities=10% Similarity=0.084 Sum_probs=60.6
Q ss_pred CCCCCCCCCcccceeccccccC--CC-CChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHHCCcccccCCc
Q 046501 2 KKRRAPEAGGAWPVTGHLHLLG--GP-EPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTTHDKVFASRPK 77 (100)
Q Consensus 2 ~~~~~p~~p~~~p~lg~~~~~~--~~-~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~ 77 (100)
+++.+||+ ++|++.... .. .+++..+.++++ ||+++.+++ ++.+++++++++.++++|.+ ...|++++.
T Consensus 3 ~~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~-~~~fs~r~~ 75 (428)
T 1cpt_A 3 ARATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQ-PGLFSNAEG 75 (428)
T ss_dssp TTCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHC-TTTEESSSS
T ss_pred cccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcC-chhccCccc
Confidence 34556666 888754332 11 236778888876 799999997 67899999999999999964 457877654
Q ss_pred -hhH----H-H-H---hh---cCccceEeCcCCCCC
Q 046501 78 -TLA----M-E-I---FG---YNFSMFGFSPYGSYW 100 (100)
Q Consensus 78 -~~~----~-~-~---~~---~~~~gl~~~~~g~~W 100 (100)
... . . . .+ ....++++++ |+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~-g~~~ 110 (428)
T 1cpt_A 76 SEILYDQNNEAFMRSISGGCPHVIDSLTSMD-PPTH 110 (428)
T ss_dssp CSSCCCHHHHHHHHHHTTTSSCSSCCGGGCC-TTHH
T ss_pred cccCCcccccchhccccccccccccccccCC-hHHH
Confidence 211 1 1 2 22 1124788887 8876
No 41
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=98.66 E-value=1e-08 Score=63.92 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHh--CCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhcCccceEeCcCCCCC
Q 046501 26 EPPHRVLGAMADKY--GPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 26 ~~~~~~~~~~~~~y--g~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
.+++..+.+++++| |+++++.+++ +.++++|++.+++++ ++.+.|++++...........+.++++++ |+.|
T Consensus 19 ~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-g~~~ 92 (398)
T 4fb2_A 19 GTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYETGEFELMMAGQD-DPVH 92 (398)
T ss_dssp SSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC----CCCTTTTCC-TTHH
T ss_pred cChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCCCcccccCcccCC-chHH
Confidence 57899999999999 9999998875 699999999999999 55667877654322111111223556665 7766
No 42
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=98.63 E-value=2.4e-08 Score=62.62 Aligned_cols=71 Identities=8% Similarity=0.118 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHH-----HHhhcCccceEeCcCCCCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAM-----EIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~-----~~~~~~~~gl~~~~~g~~W 100 (100)
.+++..+.++ ++||+++++++++.+++++++++.++++|.++ .|++++..... ......+.++++++ |+.|
T Consensus 20 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~h 95 (411)
T 3a4g_A 20 QNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDP--RLSKDWRHTLPEDQRADMPATPTPMMILMD-PPDH 95 (411)
T ss_dssp TCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCT--TEESCGGGGSCGGGCTTCCSCSSCCGGGCC-TTHH
T ss_pred cCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCC--CcccccccccccccccccCcccccccccCC-chHH
Confidence 5688899999 89999999999999999999999999999764 37766432210 11111235777776 8776
No 43
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=98.58 E-value=2.1e-08 Score=62.72 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHHC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTTH 68 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~~ 68 (100)
.+++..+.++ ++||+++++++ ++.++++++|++++++++.++
T Consensus 24 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~ 66 (408)
T 3abb_A 24 YQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP 66 (408)
T ss_dssp TSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT
T ss_pred cCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC
Confidence 5678889999 89999999997 788999999999999999753
No 44
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=98.56 E-value=9.7e-08 Score=59.69 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
.+++..+.++ ++||+++++++++.+++++++++.+++++.++ .|++++
T Consensus 14 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~ 61 (404)
T 1z8o_A 14 VDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDP 61 (404)
T ss_dssp SSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCT
T ss_pred cCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccc
Confidence 5688899999 99999999999989999999999999999765 576654
No 45
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=98.49 E-value=4.9e-08 Score=61.41 Aligned_cols=71 Identities=11% Similarity=0.014 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHHCCcccccCCch-hHHHHhh--cCccceEeCcCCCCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTTHDKVFASRPKT-LAMEIFG--YNFSMFGFSPYGSYW 100 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~-~~~~~~~--~~~~gl~~~~~g~~W 100 (100)
.+++..+.++ ++||+++++++ ++.++++++|++.+++++.++ .|++++.. .....+. ..+.++++++ |+.|
T Consensus 37 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~d-g~~h 111 (417)
T 2y5n_A 37 LTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLLSMD-PPEH 111 (417)
T ss_dssp CCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGGGCC-TTHH
T ss_pred cCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCccCC-chHH
Confidence 4678889999 89999999997 789999999999999999753 46554322 1100011 0125777776 8876
No 46
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=98.48 E-value=6e-08 Score=60.66 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHHCCcccccCCc--h-hHHHHh-h-cCccceEeCcCCCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTTHDKVFASRPK--T-LAMEIF-G-YNFSMFGFSPYGSY 99 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~--~-~~~~~~-~-~~~~gl~~~~~g~~ 99 (100)
.+++..+.++ ++||+++++++ ++.++++++|++++++++.++ .|++++. . .....+ . ..+.++++++ |+.
T Consensus 19 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~ 94 (403)
T 3aba_A 19 FLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLLWQD-EPE 94 (403)
T ss_dssp TSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCTTCC-TTH
T ss_pred cChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--CcccccccccccccccccccccccccccCC-chh
Confidence 4567778888 89999999997 789999999999999999753 4666531 1 100001 0 0125777776 887
Q ss_pred C
Q 046501 100 W 100 (100)
Q Consensus 100 W 100 (100)
|
T Consensus 95 h 95 (403)
T 3aba_A 95 H 95 (403)
T ss_dssp H
T ss_pred H
Confidence 6
No 47
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=98.48 E-value=3.3e-07 Score=57.60 Aligned_cols=72 Identities=10% Similarity=-0.072 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHHhC-CeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhcCccceEeCcCCCCC
Q 046501 26 EPPHRVLGAMADKYG-PIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg-~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
.+++..+.++++++| +++.+..++ +.++++|++.+++++ ++...|++++...........+.++++++ |+.|
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~~~~~~~d-g~~h 110 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIY-RSPERFSSRVIWVPREAGEAYDMVPTKLD-PPEH 110 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHH-TCTTTEETTCCSSSHHHHHHCCCTTTTCC-TTTH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHH-cChhhccCCcccCCcccccccccCCccCC-cHHH
Confidence 468888888887765 899988765 589999999999999 45567877653222111121224677777 8877
No 48
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=98.33 E-value=2.6e-07 Score=58.41 Aligned_cols=71 Identities=10% Similarity=0.041 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHhCCeEEEEeC-------CccEEEEcCHHHHHHHHHHCCcccccCCch--h-HHHHhhcCccceEeCcC
Q 046501 27 PPHRVLGAMADKYGPIFTIKMG-------VNRALVVSNWEMAKECLTTHDKVFASRPKT--L-AMEIFGYNFSMFGFSPY 96 (100)
Q Consensus 27 ~~~~~~~~~~~~yg~~~~~~~~-------~~~~v~i~~p~~~~~il~~~~~~~~~~~~~--~-~~~~~~~~~~gl~~~~~ 96 (100)
+++..+.+++ +||+++++.++ +.++++++|++.++++|.++ +.|++++.. . ....+...+.++++++
T Consensus 45 ~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~d- 121 (435)
T 2wm5_A 45 VRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVLD- 121 (435)
T ss_dssp HHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGCC-
T ss_pred ChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccCC-
Confidence 4667788885 69999999876 66899999999999999864 467776521 1 1111111125788887
Q ss_pred CCCC
Q 046501 97 GSYW 100 (100)
Q Consensus 97 g~~W 100 (100)
|+.|
T Consensus 122 g~~h 125 (435)
T 2wm5_A 122 DPRH 125 (435)
T ss_dssp TTHH
T ss_pred cHHH
Confidence 8876
No 49
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=98.31 E-value=1.7e-07 Score=58.85 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
.+++..+.+++ +||+++++++ ++.+++++++++.++++|.+ ..|++++
T Consensus 22 ~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~--~~f~~~~ 70 (413)
T 2z36_A 22 FAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLAD--GRFSSDK 70 (413)
T ss_dssp TBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHC--TTEECCT
T ss_pred cCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcC--CCcccCc
Confidence 46778888887 7899999997 78999999999999999975 3566654
No 50
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=98.29 E-value=1.9e-07 Score=58.10 Aligned_cols=71 Identities=6% Similarity=-0.085 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhcCccceEeCcCCCCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
.+++..+.+++++ |+++++..++ +.++++|++.+++++.+ .+.|++++...........+.++++++ |+.|
T Consensus 24 ~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~-g~~h 94 (396)
T 3oft_A 24 QDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGD-AERLSSQCLAVTPGLGKVMQFIPLQQD-GAEH 94 (396)
T ss_dssp TCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHC-TTTEESTTCCSSTTHHHHHCCTTTTCC-HHHH
T ss_pred cChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcC-cccccCCcccCCCccccccccCccccC-CcHH
Confidence 5789999999998 9999998774 58999999999999954 467777653211111111113555555 6655
No 51
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=98.27 E-value=1.9e-07 Score=58.57 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHhCCeEEEEeC-CccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMG-VNRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~-~~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
.+++..+.+++++ |+++++.++ +.+++++++++.++++|.++ .|+++
T Consensus 29 ~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~ 76 (417)
T 3tyw_A 29 FAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSAD 76 (417)
T ss_dssp TSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECC
T ss_pred cCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccC
Confidence 5788889999988 999999986 58999999999999999765 66664
No 52
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=98.22 E-value=5.1e-07 Score=56.60 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
.+++..+.++ ++||+++++.+ ++.++++++|++++++++.++ .|++++
T Consensus 26 ~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~ 74 (404)
T 2xbk_A 26 LKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTH 74 (404)
T ss_dssp TBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBC
T ss_pred cCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCc
Confidence 4677888899 89999999997 789999999999999999753 465554
No 53
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=98.18 E-value=7.6e-07 Score=55.92 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHhCCeE-----EEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchh--HH-HHh-h-cCccceEeCc
Q 046501 26 EPPHRVLGAMADKYGPIF-----TIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTL--AM-EIF-G-YNFSMFGFSP 95 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~-----~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~--~~-~~~-~-~~~~gl~~~~ 95 (100)
.+++..+.+++ +||+++ ++.+ .++++++|++.+++++.++ ..|++++... .. ..+ . ..+.++++++
T Consensus 25 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (414)
T 2uuq_A 25 PNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQD 100 (414)
T ss_dssp TCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGCC
T ss_pred cCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccCC
Confidence 46788888884 799999 7765 6899999999999999865 5677765331 11 122 2 2236888887
Q ss_pred CCCCC
Q 046501 96 YGSYW 100 (100)
Q Consensus 96 ~g~~W 100 (100)
|+.|
T Consensus 101 -g~~h 104 (414)
T 2uuq_A 101 -PPVH 104 (414)
T ss_dssp -TTHH
T ss_pred -chhH
Confidence 8876
No 54
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=98.15 E-value=1.1e-06 Score=55.67 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhcCccceEeCcCCCCC
Q 046501 27 PPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 27 ~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
++...+.++ ++||+++++..++ ++++++++.++++|.+.. .|++++......... +..++++++ |+.|
T Consensus 54 ~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~-~~~~l~~~d-g~~h 121 (441)
T 3nc3_A 54 NPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVM-RGPVLAQMH-GKEH 121 (441)
T ss_dssp CGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSC-C-------------
T ss_pred ChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-ccccccccccccccc-CCCccccCC-cHHH
Confidence 455666665 6899999987655 899999999999997654 477665432221111 213577777 8887
No 55
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=98.15 E-value=3e-06 Score=53.11 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHH-Hhh-------cCccceEeCcCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAME-IFG-------YNFSMFGFSPYG 97 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~-~~~-------~~~~gl~~~~~g 97 (100)
.+++..+.++ ++||+++++.++ ++++++++.+++++.. ...+++++...... ..+ ..+.++++++ |
T Consensus 29 ~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g 102 (418)
T 3r9b_A 29 ADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRH-PSSCSDRTKSTIFQRQLAAETQPRPQGPASFLFLD-P 102 (418)
T ss_dssp TCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHC-TTEECCGGGCHHHHHHHC---------CCCGGGCC-T
T ss_pred cCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcC-cccccCcccccccccccccccccccccccchhhcC-C
Confidence 5788888888 578999987765 9999999999999964 44445554322221 111 1225788887 8
Q ss_pred CCC
Q 046501 98 SYW 100 (100)
Q Consensus 98 ~~W 100 (100)
+.|
T Consensus 103 ~~h 105 (418)
T 3r9b_A 103 PDH 105 (418)
T ss_dssp THH
T ss_pred chH
Confidence 776
No 56
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=98.08 E-value=1.9e-06 Score=54.04 Aligned_cols=68 Identities=15% Similarity=0.029 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhcCccceEeCcCCCCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
.+++..+.++++ ||++ +.++.+.+++++++.+++++.+. +.|++++..... .....+.++++++ |+.|
T Consensus 28 ~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~-~~~~~~~~~~~~~-g~~~ 95 (411)
T 2jjn_A 28 TALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRVIE-GASPTPGMIHEID-PPEH 95 (411)
T ss_dssp HHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGGST-TCCCCTTCGGGCC-TTHH
T ss_pred cChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCcccccCC-cccccccccccCC-chHH
Confidence 357778888876 9998 56777899999999999999753 467776532211 1112225777776 8876
No 57
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=98.07 E-value=6.7e-06 Score=51.47 Aligned_cols=42 Identities=21% Similarity=0.148 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTH 68 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~ 68 (100)
.+++..+.++ ++||+++++++++.++++++||+++++++.++
T Consensus 15 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~ 56 (408)
T 1odo_A 15 ADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSS 56 (408)
T ss_dssp TTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCT
T ss_pred CChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCC
Confidence 5788899999 99999999998888999999999999999654
No 58
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=98.06 E-value=8.6e-07 Score=56.09 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=36.1
Q ss_pred CCCCCcccceeccccccC---CCC-ChHHHHHHHHHHhCC-eEEEEeCCcc
Q 046501 6 APEAGGAWPVTGHLHLLG---GPE-PPHRVLGAMADKYGP-IFTIKMGVNR 51 (100)
Q Consensus 6 ~p~~p~~~p~lg~~~~~~---~~~-~~~~~~~~~~~~yg~-~~~~~~~~~~ 51 (100)
.+|+|.++|++|++..+. ... ++..++.++.++||+ +|++++++.+
T Consensus 10 ~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~ 60 (473)
T 3dan_A 10 EIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGP 60 (473)
T ss_dssp CCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCT
T ss_pred CCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCC
Confidence 367777899999997652 014 678899999999999 9999986443
No 59
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=98.04 E-value=1.1e-06 Score=55.20 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCC--ccEEEEcCHHHHHHHHHHCCcccccCCc
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGV--NRALVVSNWEMAKECLTTHDKVFASRPK 77 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~--~~~v~i~~p~~~~~il~~~~~~~~~~~~ 77 (100)
.+++..+.++++ ||+|+.+...+ .+++++++++.++++|. +...|++++.
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~-~~~~fs~~~~ 88 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLA-PSAPLTSEYG 88 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSC-TTSSEECTTC
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHh-ChhhhcCCcc
Confidence 368888888876 99999986444 78999999999999994 4456777654
No 60
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=98.02 E-value=9.5e-06 Score=50.63 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=39.2
Q ss_pred CChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHHCCcccc
Q 046501 26 EPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTTHDKVFA 73 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~ 73 (100)
.+++..+.++ ++||+++++.+ ++.+.++++|++.+++++.++ .|+
T Consensus 16 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~ 61 (396)
T 1n40_A 16 DRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFS 61 (396)
T ss_dssp SSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEE
T ss_pred cCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--Ccc
Confidence 4678899999 99999999997 788999999999999999753 355
No 61
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=98.02 E-value=1.3e-05 Score=50.23 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHHC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTTH 68 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~~ 68 (100)
.+++..+.++ ++||+++++++ ++.++++++||+++++++.++
T Consensus 17 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~ 59 (411)
T 1gwi_A 17 TDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDP 59 (411)
T ss_dssp SCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCT
T ss_pred CChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCC
Confidence 5688889999 99999999997 788999999999999999754
No 62
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=98.01 E-value=1.6e-06 Score=54.95 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhCCeE--EEE-eCCccEEEEcCHHHHHHHHHHCCcccccCCc
Q 046501 28 PHRVLGAMADKYGPIF--TIK-MGVNRALVVSNWEMAKECLTTHDKVFASRPK 77 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~--~~~-~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~ 77 (100)
++..+.++ ++||+++ .+. +++.++++|++++.++++|.+ ...|++++.
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~-~~~fs~~~~ 97 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKD-NATFLNNPK 97 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHC-TTTEESSSS
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhC-cccccCCCc
Confidence 56667777 6789999 887 677899999999999999955 467777653
No 63
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=98.01 E-value=2e-06 Score=54.00 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCC--ccEEEEcCHHHHHHHHHHCCcccccCCchh----HH-HHhhcCccceEeCcCCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGV--NRALVVSNWEMAKECLTTHDKVFASRPKTL----AM-EIFGYNFSMFGFSPYGS 98 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~--~~~v~i~~p~~~~~il~~~~~~~~~~~~~~----~~-~~~~~~~~gl~~~~~g~ 98 (100)
..++..+.+++ +||+++++.+++ .+.+++++++.+++++.. ..|++++... .. ...+..+.++++++ |+
T Consensus 27 ~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g~ 102 (411)
T 2dkk_A 27 PEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSLAFAD-QP 102 (411)
T ss_dssp SCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCSTTCC-TT
T ss_pred ccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhccccccccCC-ch
Confidence 45668888887 899999998764 789999999999999964 4666543221 01 11111025777776 87
Q ss_pred CC
Q 046501 99 YW 100 (100)
Q Consensus 99 ~W 100 (100)
.|
T Consensus 103 ~h 104 (411)
T 2dkk_A 103 DH 104 (411)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 64
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=97.99 E-value=2.2e-06 Score=53.46 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhcCccceEeCcCCCCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
.+++..+.++++ ||+++++. . ++++++|++.+++++.+. ..|++++... .... . +.++++++ |+.|
T Consensus 18 ~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~-~-~~~l~~~~-g~~h 83 (398)
T 2xkr_A 18 REARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQP-A-LPMMIDMD-DPAH 83 (398)
T ss_dssp TTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCT-TTEESTTCSS-TTSC-C-CSSGGGCC-TTHH
T ss_pred cChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCc-ccccCccccC-Cccc-c-cccccccC-chHH
Confidence 568888988887 99998654 3 899999999999999653 4677765322 1111 2 25777777 8776
No 65
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=97.95 E-value=2.3e-05 Score=49.38 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHhCCeEEEEeC--CccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMG--VNRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~--~~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
.+++..+.+++ +||+++++.++ +.++++++|++.++++|.++ .|++++
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~ 69 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNA 69 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSC
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccc
Confidence 35778888876 59999999987 77899999999999999754 677764
No 66
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=97.90 E-value=2.9e-05 Score=48.80 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
.+++..+.++ ++||++++ . ++.+++++++++.++++|.++. |++++
T Consensus 26 ~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~ 71 (419)
T 1q5d_A 26 EDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSR 71 (419)
T ss_dssp TCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCG
T ss_pred hChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccc
Confidence 4688888888 78999998 5 7779999999999999997653 87775
No 67
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=97.89 E-value=7.3e-06 Score=51.10 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHH-------HHhhcCccceEeCcCCCC
Q 046501 27 PPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAM-------EIFGYNFSMFGFSPYGSY 99 (100)
Q Consensus 27 ~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~-------~~~~~~~~gl~~~~~g~~ 99 (100)
+++..+.++ ++||++++ . +.++++++|++.++++|.+ ..|++++..... ...+..+.++++++ |+.
T Consensus 14 ~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~ 86 (397)
T 3buj_A 14 DPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQD-EPD 86 (397)
T ss_dssp CCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGGGCC-TTH
T ss_pred CchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccccCC-chh
Confidence 567777766 58999998 5 5789999999999999964 466654322111 11111025788877 887
Q ss_pred C
Q 046501 100 W 100 (100)
Q Consensus 100 W 100 (100)
|
T Consensus 87 h 87 (397)
T 3buj_A 87 H 87 (397)
T ss_dssp H
T ss_pred H
Confidence 6
No 68
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=97.85 E-value=6.6e-06 Score=51.35 Aligned_cols=65 Identities=8% Similarity=0.108 Sum_probs=39.7
Q ss_pred HHHHHHHhCCeEEEEeC-Cc---cEEEEcCHHHHHHHHHHCCcccccCCc------hh---HHHHhhcCccceEeCcCCC
Q 046501 32 LGAMADKYGPIFTIKMG-VN---RALVVSNWEMAKECLTTHDKVFASRPK------TL---AMEIFGYNFSMFGFSPYGS 98 (100)
Q Consensus 32 ~~~~~~~yg~~~~~~~~-~~---~~v~i~~p~~~~~il~~~~~~~~~~~~------~~---~~~~~~~~~~gl~~~~~g~ 98 (100)
+.+++++ |+++++.++ +. ++++++|++.++++|+++ ..|++++. .. ....... +.++++++ |+
T Consensus 19 ~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-g~ 94 (398)
T 1lfk_A 19 ADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPREL-VGNLMDYD-PP 94 (398)
T ss_dssp CHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------CC-TTCGGGCC-TT
T ss_pred hHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCccccccccc-ccCccccC-CH
Confidence 3446666 999998865 45 899999999999999443 35666543 11 1111112 25788877 88
Q ss_pred CC
Q 046501 99 YW 100 (100)
Q Consensus 99 ~W 100 (100)
.|
T Consensus 95 ~~ 96 (398)
T 1lfk_A 95 EH 96 (398)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 69
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=97.78 E-value=2.2e-05 Score=48.49 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCc--h-hHHH----H--hhc-CccceEeCcCCC
Q 046501 29 HRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPK--T-LAME----I--FGY-NFSMFGFSPYGS 98 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~--~-~~~~----~--~~~-~~~gl~~~~~g~ 98 (100)
+..+.++ ++||+++++ + +.+++++++.++++|.+ ...|++++. . .... . ++. .+.++++++ |+
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~ 74 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNN-FSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSD-PP 74 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHC-TTTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCC-TT
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcC-cccccccccccccccccccccccccccccccccccCC-Ch
Confidence 4456666 589999976 3 68999999999999986 446877764 1 1111 1 111 115777777 88
Q ss_pred CC
Q 046501 99 YW 100 (100)
Q Consensus 99 ~W 100 (100)
.|
T Consensus 75 ~h 76 (368)
T 1io7_A 75 LH 76 (368)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 70
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=97.68 E-value=1.7e-05 Score=49.06 Aligned_cols=65 Identities=18% Similarity=0.088 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCc-hh-HH-----H-HhhcC--ccceEeCcCCC
Q 046501 29 HRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPK-TL-AM-----E-IFGYN--FSMFGFSPYGS 98 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~-~~-~~-----~-~~~~~--~~gl~~~~~g~ 98 (100)
+..+.++ ++||+++++. + .+++++++.++++|.+. +.|++++. .. .. . .+... ..++++++ |+
T Consensus 2 ~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g~ 74 (367)
T 3b4x_A 2 YDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSD-PP 74 (367)
T ss_dssp HHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGGCC-TT
T ss_pred CHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhcccccccccCC-ch
Confidence 3456666 5799999887 3 89999999999999754 47776632 11 11 1 11110 15788887 88
Q ss_pred CC
Q 046501 99 YW 100 (100)
Q Consensus 99 ~W 100 (100)
.|
T Consensus 75 ~h 76 (367)
T 3b4x_A 75 LH 76 (367)
T ss_dssp HH
T ss_pred hH
Confidence 76
No 71
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=97.48 E-value=0.00013 Score=46.02 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
.+++..+.+++++ |+|+.+.. ++.++++|++++.+++++.+. ..|+++.
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~ 87 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDA 87 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCG
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-ccccccc
Confidence 4578888888876 99999986 457899999999999998653 4565543
No 72
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=97.16 E-value=4.2e-05 Score=46.83 Aligned_cols=54 Identities=19% Similarity=0.067 Sum_probs=36.0
Q ss_pred HHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhHHHHhhcCccceEeCcCCCCC
Q 046501 37 DKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLAMEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 37 ~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~g~~W 100 (100)
++||+++++ + ++++++++.++++|.++ ..|++++....... . +.++++++ |+.|
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~--~-~~~l~~~~-g~~~ 55 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA--G-GISFITMD-NPEH 55 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCGGGGCC-HHHH
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc--c-ccccccCC-chHH
Confidence 579999876 3 99999999999999864 46777652110111 1 25777776 7765
No 73
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=96.69 E-value=0.00014 Score=45.74 Aligned_cols=40 Identities=10% Similarity=-0.082 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHC
Q 046501 26 EPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTH 68 (100)
Q Consensus 26 ~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~ 68 (100)
.++... +..++||+++.+.+++.. +++++++.++++|...
T Consensus 33 ~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~ 72 (416)
T 3p3o_A 33 NFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDK 72 (416)
T ss_dssp TCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCT
T ss_pred cCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCc
Confidence 445555 566789999998887666 9999999999999654
No 74
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=96.46 E-value=0.0022 Score=40.32 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=38.9
Q ss_pred ccceeccc---cccCCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCccccc
Q 046501 12 AWPVTGHL---HLLGGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 12 ~~p~lg~~---~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
++|.++-- ..+. .+++..+.+++ ++|+|++ ..+..+++|++++.++++|. +...|++
T Consensus 19 ~~P~~~~dp~~~~~~--~dP~~~~~~lR-~~gPV~~--~~~~~~~~vt~~~~v~~vl~-d~~~fs~ 78 (412)
T 4dnj_A 19 GVPHLGIDPFALDYF--ADPYPEQETLR-EAGPVVY--LDKWNVYGVARYAEVYAVLN-DPLTFCS 78 (412)
T ss_dssp TSCEECCCTTSHHHH--HSCHHHHHHHH-HHCSSEE--ETTTTEEEECSHHHHHHHHT-CTTTEES
T ss_pred CCCccCCCCCCHHHH--hCcHHHHHHHH-hcCCEEE--ECCCCEEEECCHHHHHHHHc-CCccccC
Confidence 46776621 2233 45777777765 5799975 45667899999999999995 3445544
No 75
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=96.21 E-value=0.0011 Score=41.48 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=41.5
Q ss_pred ccceecccccc---CCCCChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 12 AWPVTGHLHLL---GGPEPPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 12 ~~p~lg~~~~~---~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
++|++|+...+ ....++...+.+++++ ++++.. .+.+++++++.+++++.. ..|+++
T Consensus 42 ~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~ 101 (381)
T 2yjn_B 42 GYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRA 101 (381)
T ss_dssp HHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESS
T ss_pred cccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCC
Confidence 57999976432 1114688888888866 888654 468999999999999975 467655
No 76
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=95.92 E-value=0.0027 Score=39.59 Aligned_cols=66 Identities=11% Similarity=-0.004 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHhCCeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCCchhH-HHHhhcCccceEeCcCCCCC
Q 046501 27 PPHRVLGAMADKYGPIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRPKTLA-MEIFGYNFSMFGFSPYGSYW 100 (100)
Q Consensus 27 ~~~~~~~~~~~~yg~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~gl~~~~~g~~W 100 (100)
+++..+.++++ +|+++++..+ .+++++++.+++++.. ..|+.++.... ...... +.++++++ |+.|
T Consensus 21 dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d--~~fs~~~~~~~~~~~~~~-~~~l~~~d-g~~h 87 (394)
T 2wiy_A 21 NPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKL--PIMSVEPGWADAGPWAVA-SDTALGSD-PPHH 87 (394)
T ss_dssp CCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTS--TTEECHHHHHTCGGGGGG-GGSGGGCC-TTHH
T ss_pred CccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcC--CCccccccccccccchhc-ccccccCC-chHH
Confidence 56777777755 5899876533 7899999999999953 35554321111 111111 24677776 8766
No 77
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.67 E-value=1.2 Score=22.55 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=43.4
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhC-CeEEEEeCCccEEEEcCHHHHHHHHHH-CCcccccCC
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYG-PIFTIKMGVNRALVVSNWEMAKECLTT-HDKVFASRP 76 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg-~~~~~~~~~~~~v~i~~p~~~~~il~~-~~~~~~~~~ 76 (100)
-.++|+..-.........+.++..+|| +|..+ .+++-+|...+.+.++.++.+ +...+-+|+
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 348888764421223456888999995 88888 468899999999999888854 444554554
No 78
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=84.88 E-value=2 Score=27.07 Aligned_cols=48 Identities=13% Similarity=0.085 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHhC-CeEEEEeCCccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 27 PPHRVLGAMADKYG-PIFTIKMGVNRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 27 ~~~~~~~~~~~~yg-~~~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
+++..+.+++++.+ +++.... +....+|+..+.++++|. +...|++..
T Consensus 38 ~~~~~~~~lr~~~~~~~~~~~~-~gg~W~vtr~~dv~~vl~-d~~~fs~~~ 86 (417)
T 4dxy_A 38 GYHEAWKKVQHPGIPDLIWTPF-TGGHWIATNGDTVKEVYS-DPTRFSSEV 86 (417)
T ss_dssp CHHHHHHHHSCTTCCSEEEESS-TTSEEEECSHHHHHHHHT-CTTTEESSC
T ss_pred ChHHHHHHHHhhCCCCEEecCC-CCCEEEECCHHHHHHHHc-CchhccCCC
Confidence 46666766665543 3443332 335778999999999994 445676543
No 79
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=79.36 E-value=4 Score=19.72 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=38.7
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC------CccEEEEcCHHHHHHHHHH-CCccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG------VNRALVVSNWEMAKECLTT-HDKVF 72 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~------~~~~v~i~~p~~~~~il~~-~~~~~ 72 (100)
.-++|++..-.........+.+...+||.+..+.+. +.-+|...+++.++.++.. +...+
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 456777764331112223455888999999888764 4567777899998888864 44444
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.36 E-value=4.8 Score=20.10 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=38.9
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC--------CccEEEEcCHHHHHHHHHHCCcccccCC
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG--------VNRALVVSNWEMAKECLTTHDKVFASRP 76 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~~~ 76 (100)
-++|+++.-. ....+.++..+||+|..+.+. +.-+|...+++.++.++..+...+.++.
T Consensus 14 lfV~~Lp~~~----te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 14 VYIKGFPTDA----TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp EEEECCCTTC----CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred EEEECCCCCC----CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 4556655322 334566777899998777653 3356667899999999875555555554
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=74.54 E-value=4.9 Score=18.28 Aligned_cols=46 Identities=9% Similarity=0.085 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCccccc
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
.+.+.+...+||++..+.+.. .-+|...+++.++.++..+...+.+
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 67 (75)
T 1iqt_A 13 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGL 67 (75)
T ss_dssp HHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTT
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECC
Confidence 355677778899987776532 2455568999999998654444433
No 82
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=74.53 E-value=5.2 Score=18.63 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=37.3
Q ss_pred eeccccccCCCCC----hHHHHHHHHHHhCCeEEEEeC-------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 15 VTGHLHLLGGPEP----PHRVLGAMADKYGPIFTIKMG-------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 15 ~lg~~~~~~~~~~----~~~~~~~~~~~yg~~~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
++|+++.-. .. ..+.+.+...+||.+..+.+. +.-+|...+++.++.++.. +...+.+
T Consensus 5 ~V~nLp~~~--~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 5 VVDNVPQVG--PDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp EEESCCCCC--TTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred EEeCCCCCc--HHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 466665432 22 346677888899999887764 2345666899999888854 3334433
No 83
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=73.95 E-value=6.7 Score=19.62 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=42.2
Q ss_pred CCCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC------CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 6 APEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG------VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 6 ~p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~------~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.|+.+...-++|++..-. ....+.++..+||.+..+.+. +.-+|...+++.+..++.. +...+.++
T Consensus 3 ~~~~~~~~l~V~nlp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKI----TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp CCTTCCSEEEEESCCTTC----CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCCCCCEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 345454556788776432 334567777899998877652 2456667899988888763 44444443
No 84
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=73.74 E-value=4.6 Score=20.52 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhCCeEEEEeCCc-cEEEEcCHHHHHHHHH
Q 046501 28 PHRVLGAMADKYGPIFTIKMGVN-RALVVSNWEMAKECLT 66 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~~~~~-~~v~i~~p~~~~~il~ 66 (100)
-..-+.++...||.+..-|+-.. -++++++++.+++++.
T Consensus 28 Kt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 44567778888998888887665 5777899999999986
No 85
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=68.82 E-value=10 Score=19.47 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=41.7
Q ss_pred CCCCCcccceeccccccCC--CCC----hHHHHHHHHHHhCCeEEEEeC-----CccEEEEcCHHHHHHHHHH-CCcccc
Q 046501 6 APEAGGAWPVTGHLHLLGG--PEP----PHRVLGAMADKYGPIFTIKMG-----VNRALVVSNWEMAKECLTT-HDKVFA 73 (100)
Q Consensus 6 ~p~~p~~~p~lg~~~~~~~--~~~----~~~~~~~~~~~yg~~~~~~~~-----~~~~v~i~~p~~~~~il~~-~~~~~~ 73 (100)
.||.|...-+|-|+..... ... ..+-+.+...+||.|..+.+. |.-+|-..+++.++.++.. ++..|.
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3555655667777765431 111 223444555688998877763 3345556788887777654 566676
Q ss_pred cCC
Q 046501 74 SRP 76 (100)
Q Consensus 74 ~~~ 76 (100)
+|.
T Consensus 82 GR~ 84 (114)
T 3s6e_A 82 GKM 84 (114)
T ss_dssp TEE
T ss_pred CEE
Confidence 664
No 86
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=68.42 E-value=21 Score=22.96 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=36.5
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-+||||..-. ....+.++..+||.|..+.+. +.-+|...+++.+..++.. +...+.+
T Consensus 104 ~lfV~nL~~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g 171 (437)
T 3pgw_S 104 TLFVARVNYDT----TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 (437)
T ss_pred EEEEeCCCCCC----CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC
Confidence 34566654322 234667777889998777653 2356667899999888855 4444433
No 87
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.14 E-value=9.8 Score=18.38 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=38.0
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-++|++..-.........+.++..+||.+..+.+. +.-+|...+++.++.++.. +...+.+
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456777764331112223344888899999888764 2346667899998888763 3334433
No 88
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=65.18 E-value=9.5 Score=17.88 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=35.6
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-----C----ccEEEEcCHHHHHHHHHHCCccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-----V----NRALVVSNWEMAKECLTTHDKVF 72 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-----~----~~~v~i~~p~~~~~il~~~~~~~ 72 (100)
.-++|++..-. ....+.++..+||.+..+.+. + .-+|...+++.++.++..+...+
T Consensus 13 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~ 77 (87)
T 3s7r_A 13 KMFVGGLSWDT----SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRL 77 (87)
T ss_dssp EEEEECCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEE
Confidence 45667765322 345566777899998776652 1 23555679999988886544333
No 89
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=63.29 E-value=14 Score=19.23 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=38.6
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC------CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG------VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~------~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-++|++..-.........+.++..+||.|..+.+. +.-+|...+.+.+..++.. +...+.++
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345677764321011223466788999999877653 3456777899988888754 34444444
No 90
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=62.83 E-value=9.8 Score=17.22 Aligned_cols=46 Identities=4% Similarity=0.029 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCccccc
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
.+.+.++..+||.+..+.+.. .-+|...+++.++.++.-+...+.+
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 67 (75)
T 2mss_A 13 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 67 (75)
T ss_dssp HHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSS
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECC
Confidence 455677778899987776532 2345557999998888544444433
No 91
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.97 E-value=13 Score=18.52 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=34.7
Q ss_pred eeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCccccc
Q 046501 15 VTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 15 ~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
+++++..-. ....+.++..+||.|..+.+.. .-+|...+.+.++.++..+...+.+
T Consensus 31 ~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 95 (116)
T 1x4b_A 31 FIGGLSFET----TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG 95 (116)
T ss_dssp EEECCTTCC----CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETT
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECC
Confidence 455554322 3355677778999887666422 2345567999999998654334433
No 92
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.35 E-value=10 Score=18.95 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=36.0
Q ss_pred cceeccccccCCCCChHHHHH---HHHHHhCCeEEEEeCC------------ccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLG---AMADKYGPIFTIKMGV------------NRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~---~~~~~yg~~~~~~~~~------------~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-++|++..-.. + +.+. ++..+||.|..+.+.. .-+|...+++.++.++.. +...+.++
T Consensus 17 ~l~V~nLp~~~~-~---~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 17 LVFVVGLSQRLA-D---PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CEEEEEECTTTC-C---HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEEECCCCCCC-H---HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 345676654331 1 2334 6678899987766531 334556799999888875 55555443
No 93
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.13 E-value=14 Score=18.23 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=36.1
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC--CccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG--VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~--~~~~v~i~~p~~~~~il~~ 67 (100)
.-+++++..-. ..+.+.++..+||.|..+.+. +.-+|...+.+.++.++..
T Consensus 17 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 17 RVVVSGLPPSG----SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEEEESCCSSC----CHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 35577766322 345677788899998877754 4567777899999888864
No 94
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=58.78 E-value=16 Score=18.37 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=38.6
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC--CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG--VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~--~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-+++++..-.. .+.+.++..+||.|..+.+. +.-+|...+.+.++.++.. +...+.++
T Consensus 18 ~l~V~nLp~~~t----~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 18 RVVVSGLPPSGS----WQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp CEEEEECCSSCC----TTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred EEEEeCCCCCCC----HHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 356777764331 23455667899999888765 4566777899998888863 44455443
No 95
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=58.15 E-value=4.3 Score=20.68 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhCCeEEEEeCCc-cEEEEcCHHHHHHHHHHC--CcccccCC
Q 046501 28 PHRVLGAMADKYGPIFTIKMGVN-RALVVSNWEMAKECLTTH--DKVFASRP 76 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~~~~~-~~v~i~~p~~~~~il~~~--~~~~~~~~ 76 (100)
-..-+.++...||.+..-|+-.. -++++++++.+++++..- ...|.-+.
T Consensus 18 Kt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~t 69 (101)
T 3ctr_A 18 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQT 69 (101)
T ss_dssp CHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCC
T ss_pred hhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEE
Confidence 34556677778887777787665 677889999999999742 44444333
No 96
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.29 E-value=17 Score=18.02 Aligned_cols=47 Identities=6% Similarity=-0.009 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 29 HRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
.+.+.++..+||.|..+.+. +.-+|...+.+.++.++.-+...+.++
T Consensus 39 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 94 (114)
T 2cq4_A 39 PRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGV 94 (114)
T ss_dssp HHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTE
T ss_pred HHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCe
Confidence 45677788899999887764 234566678888888874455555444
No 97
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=55.56 E-value=17 Score=17.82 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=40.9
Q ss_pred cceeccccccCCCCC---hHHHHHHHHHHhCCeEEEEeC-------CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEP---PHRVLGAMADKYGPIFTIKMG-------VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~---~~~~~~~~~~~yg~~~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-++|+++.-.. .. ....+.+...+||.|..+.+. +.-+|...+++.++.++.. +...+.++
T Consensus 17 ~l~V~nLp~~~~-~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 17 VIVVDNVPQVGP-DRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp EEEEESCCCCCT-TTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred EEEEeCCCcchh-hhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 356788775331 11 456778888999999888764 3346667888888888865 44444443
No 98
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=54.97 E-value=19 Score=18.14 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCccccc
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
.+.+.++..+||.|..+.+.. .-+|...+.+.++.++.-+...+.+
T Consensus 50 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 104 (124)
T 2jwn_A 50 AQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRG 104 (124)
T ss_dssp HHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECC
Confidence 456777888999987666521 2356678999998888334444433
No 99
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=54.06 E-value=4.4 Score=17.72 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=8.3
Q ss_pred ccceeccccccC
Q 046501 12 AWPVTGHLHLLG 23 (100)
Q Consensus 12 ~~p~lg~~~~~~ 23 (100)
..|++||+..-.
T Consensus 30 ~ipilgn~fs~p 41 (57)
T 1b35_D 30 HIPVLGNIFSTP 41 (57)
T ss_dssp CCCCSCCSSSSC
T ss_pred ccccccccccch
Confidence 468899886543
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=53.44 E-value=21 Score=18.07 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=37.6
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
-+++++..-. ....+.++..+||.|..+.+. +.-+|...+++.++.++.. +...+.++
T Consensus 25 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 25 LFVTGVHEEA----TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 4566655322 345667778899999887763 2346667899999888853 44444443
No 101
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=52.77 E-value=21 Score=17.89 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=36.3
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC-------ccEEEEcCHHHHHHHHHH-CCccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV-------NRALVVSNWEMAKECLTT-HDKVF 72 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~-------~~~v~i~~p~~~~~il~~-~~~~~ 72 (100)
.-++|++..-. ..+.+.++..+||.|..+.+.. .-+|...+++.++.++.. +...+
T Consensus 7 ~lfV~nLp~~~----te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~ 70 (115)
T 4f25_A 7 NIFIKNLDKSI----DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 70 (115)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred EEEECCCCCCC----CHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEE
Confidence 35677765432 2356677788999987666421 246667899999888854 44333
No 102
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=51.51 E-value=21 Score=17.46 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=35.5
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC-----c----cEEEEcCHHHHHHHHHH-CCccccc
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV-----N----RALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~-----~----~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
-++||++.-. ..+.+.++..+||.|..+.+.. . -+|...+++.++.++.. +...+.+
T Consensus 22 lfV~nLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 22 LIVNYLPQNM----TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4566665432 2356677778999987766521 1 34556799999888754 4444433
No 103
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.07 E-value=19 Score=17.00 Aligned_cols=52 Identities=25% Similarity=0.192 Sum_probs=34.0
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-----C----ccEEEEcCHHHHHHHHHH
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-----V----NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-----~----~~~v~i~~p~~~~~il~~ 67 (100)
..-+++++..-. ..+.+.++..+||.+..+.+. + .-+|...+++.++.++..
T Consensus 16 ~~l~v~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 16 CCLGVFGLSLYT----TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp GCEEEESCCSSC----CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCCC----CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 345667665432 334577778899998776652 1 235556799999888864
No 104
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=50.87 E-value=19 Score=17.42 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=34.6
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC--------CccEEEEcCHHHHHHHHHHCCccccc
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG--------VNRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
-++|++..-. ..+.+.++..+||.+..+.+. +.-+|...+++.++.++. +...+.+
T Consensus 12 l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g 75 (102)
T 2xs2_A 12 VFVGGIDVRM----DETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHG 75 (102)
T ss_dssp EEEECCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECC
Confidence 4566665322 345567778899998776652 223555678888888886 4334433
No 105
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.33 E-value=20 Score=16.97 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=38.0
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
..-+++++..-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++.. +...+.++
T Consensus 6 ~~l~v~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 6 SGLYVGSLHFNI----TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp CEEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred cEEEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 345667765432 3345677778999987776532 245566899999888863 44444444
No 106
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.52 E-value=20 Score=16.61 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=32.8
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHH
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLT 66 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~ 66 (100)
..-++|++..-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++.
T Consensus 6 ~~l~v~nlp~~~----t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 6 SGLYIRGLQPGT----TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CEEEEESCCTTC----CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred cEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 345667765332 2345666777899987776422 24566689998888875
No 107
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=49.29 E-value=23 Score=17.24 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=35.8
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
-++|++..-. ....+.++..+||.|..+.+. +.-+|...+.+.++.++.. +...+.+
T Consensus 26 l~V~nlp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 26 LFVTGVHEEA----TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp EEEECCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred EEEeCCCCCC----CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 3456655322 335577788999998777652 1245556899998888864 4444443
No 108
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=49.13 E-value=23 Score=17.26 Aligned_cols=57 Identities=5% Similarity=0.013 Sum_probs=35.5
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC--------CccEEEEcCHHHHHHHHHH-CCcccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG--------VNRALVVSNWEMAKECLTT-HDKVFA 73 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~--------~~~~v~i~~p~~~~~il~~-~~~~~~ 73 (100)
.-+++++..-. ..+.+.++..+||.+..+.+. +.-+|...+++.++.++.. +...+.
T Consensus 31 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 31 KLLVSNLDFGV----SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp EEEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34566655322 335567777899998766643 1245556799999888864 444443
No 109
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=48.26 E-value=23 Score=17.16 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=38.3
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-+++++..-. ..+.+.++..+||.|..+.+. +.-+|...+++.++.++.. +...+.+
T Consensus 13 ~l~V~nl~~~~----t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 13 VLFVRNLANTV----TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CEEEECCCTTC----CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 34566665322 335667778899999888764 3456667899999888864 4444433
No 110
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=48.12 E-value=22 Score=16.89 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=33.6
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC----CccEEEEcCHHHHHHH
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG----VNRALVVSNWEMAKEC 64 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~----~~~~v~i~~p~~~~~i 64 (100)
..-++|++..-. ..+.+.+...+||.|..+.+. +.-+|...+++.++.+
T Consensus 12 ~~l~V~~Lp~~~----te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 12 SKVFVGRCTEDM----TAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp CEEEEESCCTTC----CHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCC----CHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 355677766433 234566777899999888865 3456777899988753
No 111
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=47.36 E-value=36 Score=19.01 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhCCeEEEEeC--------CccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 28 PHRVLGAMADKYGPIFTIKMG--------VNRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
....+.++..+||.|..+.+. +.-+|...+.+.++.++......+.++
T Consensus 122 t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr 177 (193)
T 2voo_A 122 TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKET 177 (193)
T ss_dssp CHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTE
T ss_pred CHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 446777888899998766542 234566689999999986544444443
No 112
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.21 E-value=29 Score=17.93 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=34.2
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---CccEEEEcCHHHHHHHHH
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---VNRALVVSNWEMAKECLT 66 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---~~~~v~i~~p~~~~~il~ 66 (100)
..-++|++..-. ....+.++..+||.|..+.+. +.-+|...+.+.+..++.
T Consensus 32 ~~LfVgNLp~~v----te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 32 RVIHIRKLPIDV----TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SEEEEESCCTTC----CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 345677776432 234566778899998777654 345666678888887775
No 113
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=47.10 E-value=27 Score=17.48 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=37.3
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-----C----ccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-----V----NRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-----~----~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
--+++++..-. ..+.+.++..+||.|..+.+. + .-+|...+++.++.++.. +...+.+
T Consensus 8 ~lfV~nL~~~~----te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 8 EVTFARLNDNV----RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp EEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEECCCCCC----CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45667765322 345666777899998877652 1 236667899999888864 4444444
No 114
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.63 E-value=25 Score=16.99 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=33.1
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~ 67 (100)
.-+++++..-. ..+.+.++..+||.|..+.+.. .-+|...+.+.++.++..
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 17 TIRVTNLSEDT----RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEEEESCCTTC----CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 44567665432 2345666778899987776532 235566899999888864
No 115
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.30 E-value=27 Score=17.33 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=37.3
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
.-+++++..-. ..+.+.++..+||.|..+.+.. .-+|...+.+.++.++......+.+
T Consensus 19 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 85 (116)
T 2cqd_A 19 KIFVGGLPYHT----TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG 85 (116)
T ss_dssp EEEEECCCSSC----CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETT
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCC
Confidence 34566665332 3355677778999998777643 2355668999999988654333333
No 116
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=45.95 E-value=27 Score=17.27 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=34.6
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCC
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHD 69 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~ 69 (100)
-++|++..-. ..+.+.++..+||.+..+.+.. .-+|...+.+.++.++....
T Consensus 28 lfV~nLp~~~----te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 28 MFIGGLSWQT----TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp EEEESCCTTC----CHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred EEEeCCCCCC----CHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 3455554322 3355677788999988777632 34666789999999986544
No 117
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=45.28 E-value=24 Score=16.40 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCccccc
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
.+.+.++..+||.+..+.+.. .-+|...+++.++.++.-+...+.+
T Consensus 20 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g 74 (89)
T 3ucg_A 20 AEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRG 74 (89)
T ss_dssp HHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETT
T ss_pred HHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECC
Confidence 455677788999987665421 2355667899888887444444443
No 118
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=44.21 E-value=37 Score=18.23 Aligned_cols=57 Identities=11% Similarity=0.048 Sum_probs=35.9
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
-+++++..-. ....+.++..+||.|..+.+. +.-+|...+.+.++.++.. +...+.+
T Consensus 75 l~V~nLp~~~----t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 75 LFVTSIHEEA----QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEeCCCCCC----CHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4556655322 345677888999998776653 2345566889988888754 4444433
No 119
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.06 E-value=28 Score=16.86 Aligned_cols=60 Identities=7% Similarity=0.020 Sum_probs=37.1
Q ss_pred CcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC----------ccEEEEcCHHHHHHHHHHCCccccc
Q 046501 10 GGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV----------NRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 10 p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~----------~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
+...-+++++..-. ..+.+.++..+|| +..+.+.. .-+|...+++.++.++.-+...+.+
T Consensus 14 ~~~~l~V~nlp~~~----t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g 83 (104)
T 1wi8_A 14 PPYTAFLGNLPYDV----TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 83 (104)
T ss_dssp SCEEEEEESCCSSC----CHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETT
T ss_pred CCCEEEEeCCCCcC----CHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCC
Confidence 33345677765433 2345667778899 87777631 2456678999998888434444433
No 120
>2zdj_A Hypothetical protein TTMA177; alpha and beta proteins (A+B), cystatin-like, NPPSFA; 2.20A {Thermus thermophilus phage tma}
Probab=43.72 E-value=25 Score=16.18 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=17.6
Q ss_pred CCccEEEEcCHHHHHHHHHHCC
Q 046501 48 GVNRALVVSNWEMAKECLTTHD 69 (100)
Q Consensus 48 ~~~~~v~i~~p~~~~~il~~~~ 69 (100)
++...+++.|+..+|.||..-+
T Consensus 10 F~D~Y~l~qdsq~VK~iLeyIG 31 (69)
T 2zdj_A 10 FGDDYTLIQDSQEVKAILEYIG 31 (69)
T ss_dssp CCTTCEEECCHHHHHHHHHHHT
T ss_pred cCCCeEEEeCHHHHHHHHHHhc
Confidence 4557889999999999996543
No 121
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.24 E-value=29 Score=16.75 Aligned_cols=60 Identities=17% Similarity=0.069 Sum_probs=37.7
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-------CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-------VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
..-+++++..-. ..+.+.++..+||.|..+.+. +.-+|...+++.++.++.. +...+.++
T Consensus 16 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 16 VNLYVKNLDDGI----DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCEEEECCCTTC----CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 355677765432 234566777889998776653 1245666899999888864 44444443
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=43.02 E-value=33 Score=17.34 Aligned_cols=59 Identities=15% Similarity=0.028 Sum_probs=39.0
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhC-CeEEEEeC-----CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYG-PIFTIKMG-----VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg-~~~~~~~~-----~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-++||+..-. ..+.+.++..+|| .+..+.+. +.-+|...+.+.++.++.. +...+.++
T Consensus 30 ~l~VgnLp~~~----te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 30 RITMKNLPEGC----SWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp EEEEECSSCCC----CHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred EEEEECCCCCC----CHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45677766432 3456777888999 77776653 4567777899999888854 44444443
No 123
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=42.71 E-value=27 Score=16.34 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=37.0
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-------CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-------VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-+++++..-. ..+.+.++..+||.+..+.+. +.-+|...+.+.++.++.. +...+.++
T Consensus 10 ~l~V~nlp~~~----t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 10 QIFVRNLPFDF----TWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp EEEECSCCTTC----CHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 45567766322 345677788899998766543 2245556799988888764 44444443
No 124
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=42.64 E-value=49 Score=19.27 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=35.8
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC------ccEEEEcCHHHHHHHHHH
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV------NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~------~~~v~i~~p~~~~~il~~ 67 (100)
..-++|++..-.......+.+.++..+||.|..+.+.. .-+|...+.+.++.++..
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~ 71 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34567777643321222234667888999988776532 356667899998888743
No 125
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.40 E-value=29 Score=16.61 Aligned_cols=58 Identities=9% Similarity=0.019 Sum_probs=36.5
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC--------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG--------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~--------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-+++++..-. ..+.+.++..+||.+..+.+. +.-+|...+++.++.++.. +...+.+
T Consensus 19 ~l~v~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 19 KLFISGLPFSC----TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp CEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 44566665322 334567777899998776653 2345667899999888854 4444433
No 126
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=42.01 E-value=30 Score=16.54 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=39.1
Q ss_pred cceeccccc-cCCCCChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHL-LGGPEPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~-~~~~~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-++|++.. -. ..+.+.++..+||.|..+.+ -+.-+|...+++.++.++.. +...+.++
T Consensus 12 ~l~V~nlp~~~~----t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 12 RLFIGNLPLKNV----SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp EEEEESSTTSCC----CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred EEEEeCCCcccC----CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 456777764 32 23456777789999877765 44567777899999888864 44444443
No 127
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=41.47 E-value=26 Score=18.24 Aligned_cols=16 Identities=25% Similarity=0.752 Sum_probs=13.2
Q ss_pred HHHHHHHhCCeEEEEe
Q 046501 32 LGAMADKYGPIFTIKM 47 (100)
Q Consensus 32 ~~~~~~~yg~~~~~~~ 47 (100)
-.++.++||.+|++.+
T Consensus 10 ~~~lk~kygk~y~v~~ 25 (114)
T 3fgx_A 10 TDELKQKYGRVYEIRI 25 (114)
T ss_dssp HHHHHHHHSSEEEEEE
T ss_pred HHHHHHHhCceEEEEe
Confidence 4578899999998876
No 128
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=41.41 E-value=31 Score=16.62 Aligned_cols=50 Identities=18% Similarity=0.184 Sum_probs=34.4
Q ss_pred ceeccccc-cCCCCChHHHHHHHHHHhCCeEEEEeC-CccEEEEcCHHHHHHHHHH
Q 046501 14 PVTGHLHL-LGGPEPPHRVLGAMADKYGPIFTIKMG-VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 14 p~lg~~~~-~~~~~~~~~~~~~~~~~yg~~~~~~~~-~~~~v~i~~p~~~~~il~~ 67 (100)
-++|++.. -. ..+.+.++..+||.+..+.+. +.-+|...+.+.++.++..
T Consensus 25 l~V~nLp~~~~----t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 25 LFIGNLPLKNV----SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEEESCCSSCC----CHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCcccC----CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 45666653 22 335567788899999887764 4456667899999888863
No 129
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=41.37 E-value=31 Score=17.85 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=12.3
Q ss_pred EEEEcCHHHHHHHHHH
Q 046501 52 ALVVSNWEMAKECLTT 67 (100)
Q Consensus 52 ~v~i~~p~~~~~il~~ 67 (100)
+++-+||+..++|..+
T Consensus 6 vvfssdpeilkeivre 21 (162)
T 2l82_A 6 VVFSSDPEILKEIVRE 21 (162)
T ss_dssp EEEESCHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHH
Confidence 4566899999998743
No 130
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=41.07 E-value=31 Score=16.54 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCeEEEEeC----CccEEEEcCHHHHHHHHHH
Q 046501 29 HRVLGAMADKYGPIFTIKMG----VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~----~~~~v~i~~p~~~~~il~~ 67 (100)
.+.+.++..+||.+..+.+. +.-+|...+++.++.++..
T Consensus 14 ~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 14 KGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp HHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH
Confidence 45677788899998776653 2345566899998888763
No 131
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=41.01 E-value=33 Score=16.78 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=35.8
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH-CCccc
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT-HDKVF 72 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~ 72 (100)
-++|++..-. ....+.++..+||.+..+.+. +.-+|...+++.++.++.. +...+
T Consensus 29 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 29 LFVTSIHEEA----QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4566655322 345577788999999888764 2345667899999888863 34343
No 132
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.90 E-value=32 Score=16.59 Aligned_cols=52 Identities=17% Similarity=-0.070 Sum_probs=34.4
Q ss_pred ccceeccccccCCCCChHHHHHHHHHH-hCCeEEEEeC--------CccEEEEcCHHHHHHHHHH
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADK-YGPIFTIKMG--------VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~-yg~~~~~~~~--------~~~~v~i~~p~~~~~il~~ 67 (100)
..-++|++..-. ..+.+.++..+ ||.|..+.+. +.-+|...+.+.++.++..
T Consensus 10 ~~l~V~nLp~~~----t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 10 YSLFVGDLTPDV----DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp CCEEEECCCTTC----CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred cEEEEeCCCCCC----CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 455677776433 23456667777 9998776652 1245667899999888864
No 133
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=40.82 E-value=35 Score=17.09 Aligned_cols=59 Identities=20% Similarity=0.155 Sum_probs=36.9
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC--------ccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV--------NRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~--------~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-++|++..-. ..+.+.++..+||.|..+.+.. .-+|...+.+.++.++.. +...+.++
T Consensus 9 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 9 KLFIGGLNRET----NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp EEEEECCTTTC----CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34566665322 3455677788999987666532 345566899999888864 34444443
No 134
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.50 E-value=33 Score=16.61 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=37.4
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
.-+++++..-. ..+.+.++..+||.|..+.+.. .-+|...+++.++.++..+...+.++
T Consensus 18 ~l~V~nlp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 85 (105)
T 2dh8_A 18 KLFVGGLDWST----TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 85 (105)
T ss_dssp EECCBSCCTTC----CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 34566665332 3455677788999987666422 23556689999999887654444443
No 135
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.41 E-value=33 Score=16.55 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=36.6
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC-------ccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV-------NRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~-------~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-+++++..-. ..+.+.++..+||.|..+.+.. .-+|...+++.++.++.. +...+.+
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 17 TLYVGNLSRDV----TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp EEEEESCCTTC----CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred EEEEeCCCccC----CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 34566665322 3456677788999987776532 345667899998888863 3434433
No 136
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.08 E-value=36 Score=16.94 Aligned_cols=53 Identities=9% Similarity=-0.032 Sum_probs=36.5
Q ss_pred Ccccceeccccc-cCCCCChHHHHHHHHHHhCCeEEEEeCC---ccEEEEcCHHHHHHHHH
Q 046501 10 GGAWPVTGHLHL-LGGPEPPHRVLGAMADKYGPIFTIKMGV---NRALVVSNWEMAKECLT 66 (100)
Q Consensus 10 p~~~p~lg~~~~-~~~~~~~~~~~~~~~~~yg~~~~~~~~~---~~~v~i~~p~~~~~il~ 66 (100)
|...-++||+.. -. ....+.++..+||.|..+.+.. .-+|...+.+.+..++.
T Consensus 14 p~~~l~V~nLp~~~~----te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKN----LRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSS----HHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcC----CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 333456777764 22 3345667788999998888653 45777788888888775
No 137
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.94 E-value=28 Score=15.60 Aligned_cols=43 Identities=7% Similarity=0.000 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCccc
Q 046501 30 RVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVF 72 (100)
Q Consensus 30 ~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~ 72 (100)
+.+.+...+||++..+.+.. .-+|...+++.++.++......+
T Consensus 15 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~ 66 (77)
T 1uaw_A 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 66 (77)
T ss_dssp HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCC
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCcc
Confidence 34666778899876555421 12344568888888886544333
No 138
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=39.70 E-value=45 Score=17.92 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhC--CeEEEEeC-----C----ccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 29 HRVLGAMADKYG--PIFTIKMG-----V----NRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 29 ~~~~~~~~~~yg--~~~~~~~~-----~----~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.+.+.++..+|| .+..+.+. + .-+|...+.+.++.++.. +...+.++
T Consensus 69 e~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 69 DQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred HHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 456777889999 88777652 1 246667899999999876 55555444
No 139
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=39.55 E-value=36 Score=16.83 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=35.8
Q ss_pred eeccccccCCCCChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 15 VTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 15 ~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
++|++..-. ..+.+.++..+||.|..+.+ -+.-+|...+.+.++.++.. +...+.+
T Consensus 35 ~V~nLp~~~----t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 35 FVRPFPLDV----QESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp EECSSCTTC----CHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred EEECCCCCC----CHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 455554322 34567778889999877665 44556667899998888864 4444433
No 140
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.21 E-value=39 Score=17.05 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=35.1
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---CccEEEEcCHHHHHHHHH
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---VNRALVVSNWEMAKECLT 66 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---~~~~v~i~~p~~~~~il~ 66 (100)
..-++|++..-. ..+.+.++..+||.|..+.+. +.-+|...+.+.+..++.
T Consensus 17 ~~LfV~nLp~~v----te~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 17 RVIHIRKLPIDV----TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CEEEECSCCTTS----CHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 345677776432 234566778899999887754 345677789998888876
No 141
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=38.58 E-value=44 Score=17.49 Aligned_cols=46 Identities=7% Similarity=0.090 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCccccc
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
.+.+.+...+||.+..+.+.. .-+|-..+++.+..++..+...+.+
T Consensus 101 ~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g 155 (167)
T 2cjk_A 101 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKD 155 (167)
T ss_dssp HHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSS
T ss_pred HHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCC
Confidence 455677778999987776542 2345567999999988643333333
No 142
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=37.92 E-value=32 Score=15.82 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=35.0
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH-CCccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT-HDKVF 72 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~ 72 (100)
.-++|++..-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++.. +...+
T Consensus 8 ~l~v~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (87)
T 3bs9_A 8 HVFVGDLSPEI----TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 73 (87)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34566665322 3345677778999987766522 235556799999888864 33333
No 143
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=37.80 E-value=56 Score=18.50 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=37.9
Q ss_pred ceeccccc-cCCCCChHHHHHHHHHHhCCeEEEEeC----CccEEEEcCHHHHHHHHH-HCCccccc
Q 046501 14 PVTGHLHL-LGGPEPPHRVLGAMADKYGPIFTIKMG----VNRALVVSNWEMAKECLT-THDKVFAS 74 (100)
Q Consensus 14 p~lg~~~~-~~~~~~~~~~~~~~~~~yg~~~~~~~~----~~~~v~i~~p~~~~~il~-~~~~~~~~ 74 (100)
-+++++.. -. ..+.+.++..+||.|..+.+. +.-+|...+++.++.++. -+...+.+
T Consensus 37 l~V~nLp~~~~----te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 37 LLVSNLNPERV----TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp EEEESCCTTTC----CHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred EEEeCCCcccC----CHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 45666654 22 235667778899999888764 345677789999988885 34444433
No 144
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=37.72 E-value=18 Score=12.91 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=8.3
Q ss_pred cCHHHHHHHHH
Q 046501 56 SNWEMAKECLT 66 (100)
Q Consensus 56 ~~p~~~~~il~ 66 (100)
++||+.+..|.
T Consensus 12 sspellrrcld 22 (26)
T 2plx_B 12 SSPELLRRCLD 22 (26)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 57888888774
No 145
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.12 E-value=37 Score=16.18 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=34.2
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~ 67 (100)
.-+++++..-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++..
T Consensus 10 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 10 RLFVRNLSYTS----SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEEEECCCTTC----CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 34566665322 3346677788999998887632 245667899999888844
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.15 E-value=38 Score=16.13 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhCCeEEEEeC---CccEEEEcCHHHHHHHHHH
Q 046501 28 PHRVLGAMADKYGPIFTIKMG---VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~~~---~~~~v~i~~p~~~~~il~~ 67 (100)
..+.+.++..+||.|..+.+. +.-+|...+++.+..++..
T Consensus 26 t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 26 TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 345677888999999887764 3345666799999888854
No 147
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=36.03 E-value=45 Score=16.94 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhCCeEEEEeC---CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 28 PHRVLGAMADKYGPIFTIKMG---VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~~~---~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
..+.+.++..+||.|..+.+. +.-+|...+.+.++.++.. +...+.++
T Consensus 50 te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 50 TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 345677888899988766653 3355566788988888754 44444443
No 148
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=35.93 E-value=37 Score=15.95 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=35.4
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC--------ccEEEEcCHHHHHHHHHH-CCccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV--------NRALVVSNWEMAKECLTT-HDKVF 72 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~--------~~~v~i~~p~~~~~il~~-~~~~~ 72 (100)
.-+++++..-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++.. +...+
T Consensus 18 ~l~v~nlp~~~----~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (95)
T 2ywk_A 18 TVFVGNLEARV----REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL 82 (95)
T ss_dssp EEEEECCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34566665322 3456777888999987776532 235566789988888863 34343
No 149
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.82 E-value=40 Score=16.25 Aligned_cols=59 Identities=14% Similarity=0.010 Sum_probs=38.7
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-+++++..-. ..+.+.++..+||.|..+.+.. .-+|...+++.++.++.. +...+.++
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 17 TVYVGGLDEKV----SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp EEEEECCCTTC----CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34566665332 3456778888999998877643 345667899999999875 44444443
No 150
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.58 E-value=43 Score=16.51 Aligned_cols=53 Identities=15% Similarity=-0.028 Sum_probs=35.2
Q ss_pred CcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---CccEEEEcCHHHHHHHHH
Q 046501 10 GGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---VNRALVVSNWEMAKECLT 66 (100)
Q Consensus 10 p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---~~~~v~i~~p~~~~~il~ 66 (100)
|...-++||+..-. ....+.++..+||.|..+.+. +.-+|...+.+.++.++.
T Consensus 14 p~~~l~V~nLp~~~----te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 14 PSRVLHIRKLPGEV----TETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp CCSEEEEESCCTTC----CHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 33356677776422 234566777899998877653 345666788888888775
No 151
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=35.31 E-value=40 Score=16.10 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=34.6
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEE--------EEeCC---------ccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFT--------IKMGV---------NRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~--------~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-++|++..-. ..+.+.++..+||.+.. +.+.. .-+|...+.+.++.++.. +...+.+
T Consensus 15 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 15 TIFVQGLGENV----TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp EEEEECCCSSC----CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34566665322 34556777789998765 44321 234556788988888753 4444443
No 152
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=34.83 E-value=45 Score=16.55 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=40.0
Q ss_pred CCcccceeccccccC-CCCChHHHHHHHHHHhCCeEEEEeCC----------ccEEEEcCHHHHHHHHHH-CCcccccCC
Q 046501 9 AGGAWPVTGHLHLLG-GPEPPHRVLGAMADKYGPIFTIKMGV----------NRALVVSNWEMAKECLTT-HDKVFASRP 76 (100)
Q Consensus 9 ~p~~~p~lg~~~~~~-~~~~~~~~~~~~~~~yg~~~~~~~~~----------~~~v~i~~p~~~~~il~~-~~~~~~~~~ 76 (100)
.|...-+|.|+.... -.....+-+.+...+||.|..+.+.. .-+|...+++.+..++.. ++..|.+|.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 344456777776321 01234566777778999987766421 124445788887777654 566666654
No 153
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.69 E-value=49 Score=17.03 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=34.2
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCe------EEEEe--C----CccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPI------FTIKM--G----VNRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~------~~~~~--~----~~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
-++++++.-. ..+.+.++..+||.| +.+-. - +.-+|...+++.++.++..+...+.+|
T Consensus 26 v~V~nLp~~~----te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR 95 (123)
T 2dha_A 26 VRMRGLPFTA----TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 95 (123)
T ss_dssp EEECSCCTTC----CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSC
T ss_pred EEEeCCCCCC----CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCe
Confidence 4456555322 345566777888864 22211 1 224566689999999997765555444
No 154
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.53 E-value=42 Score=16.13 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=37.9
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-+++++..-. ..+.+.++..+||.|..+.+. +.-+|...+++.++.++.. +...+.++
T Consensus 15 ~l~V~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 15 TLKVDNLTYRT----SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp EEEEESCCTTC----CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 34567665432 335567778899999887764 2346667888888888863 44444443
No 155
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.36 E-value=41 Score=15.95 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=36.6
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC------------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG------------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~------------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-+++++..-. ..+.+.++..+||.+..+.+. +.-+|...+++.++.++.. +...+.+
T Consensus 7 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 7 GLFIKNLNFST----TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CEEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 45566665432 334567777899998766543 1345566899999999875 4444433
No 156
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.14 E-value=40 Score=15.68 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=31.9
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC----CccEEEEcCHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG----VNRALVVSNWEMAKEC 64 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~----~~~~v~i~~p~~~~~i 64 (100)
.-++|++..-. ..+.+.++..+||.|..+.+. +.-+|...+.+.++.+
T Consensus 7 ~l~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 7 GVFVGRCTGDM----TEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEEEESCCSSS----CHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred EEEEeCCCCCC----CHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 34566665332 235566777899998888764 3456677888888754
No 157
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=34.02 E-value=39 Score=15.54 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=35.7
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC----------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG----------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~----------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
-+++++..-. ..+.+.+...+||.+..+.+. +.-+|...+++.++.++.. +...+.+
T Consensus 7 l~V~nlp~~~----t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 7 VHIGRLTRNV----TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp EEEECCCTTC----CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 3455554322 334566777899998776652 2345667899999888864 4444433
No 158
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.83 E-value=43 Score=15.96 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=38.3
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
.-+++++..-. ..+.+.++..+||.+..+.+.. .-+|...+.+.++.++.-+...+.++
T Consensus 12 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 79 (99)
T 2dgs_A 12 KIFVGGIPHNC----GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 79 (99)
T ss_dssp EEEEESCCSSC----CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSC
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCe
Confidence 45567665432 3345677778899988777632 24556689999988886555455444
No 159
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.71 E-value=44 Score=16.06 Aligned_cols=58 Identities=14% Similarity=0.089 Sum_probs=37.0
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-+++++..-. ..+.+.++..+||.|..+.+. +.-+|...+.+.++.++.. +...+.+
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 17 RLHVSNIPFRF----RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp EEEEESCCTTC----CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 44567665332 334567777899998877653 2345667899999888864 4444433
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=33.39 E-value=59 Score=17.51 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=36.6
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVF 72 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~ 72 (100)
.-++|+++.-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++..+...+
T Consensus 15 ~l~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 79 (196)
T 1l3k_A 15 KLFIGGLSFET----TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79 (196)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEE
Confidence 34667765432 3456677888999987665421 34566789999999987644333
No 161
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.90 E-value=49 Score=16.39 Aligned_cols=58 Identities=9% Similarity=0.083 Sum_probs=37.5
Q ss_pred eeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---CccEEEEcCHHHHHHHHHH-CCcccccCC
Q 046501 15 VTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---VNRALVVSNWEMAKECLTT-HDKVFASRP 76 (100)
Q Consensus 15 ~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---~~~~v~i~~p~~~~~il~~-~~~~~~~~~ 76 (100)
+++|+..- -....+.++..+||.|..+.+. +.-+|...+++.++.++.. +...+.++.
T Consensus 14 ~V~nLp~~----~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 14 LAKNLPAG----TLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEESCCTT----CCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEeCCCCC----CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 45555422 2345677788899999888763 3456667889988887754 444554443
No 162
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=32.31 E-value=41 Score=15.28 Aligned_cols=45 Identities=4% Similarity=0.046 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH-CCcccc
Q 046501 29 HRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT-HDKVFA 73 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~ 73 (100)
.+.+.+...+||.+..+.+. +.-+|...+++.++.++.. +...+.
T Consensus 15 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 15 DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred HHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 35566777899998766642 1235667899999888864 444443
No 163
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=32.01 E-value=68 Score=17.72 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=32.8
Q ss_pred eeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-----CccEEEEcCHHHHHHHHHH
Q 046501 15 VTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-----VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 15 ~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-----~~~~v~i~~p~~~~~il~~ 67 (100)
++||+..- -..+.+.++..+||.|-.+.+. +.-+|...|.+.++..+..
T Consensus 50 ~VgNL~~~----vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 50 IVENLFYP----VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp EECSCCSC----CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EEeCcCCC----CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 36666532 2335677888999998777763 2356667788888877764
No 164
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.82 E-value=48 Score=15.98 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=38.5
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCc----------cEEEEcCHHHHHHHHHH--CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVN----------RALVVSNWEMAKECLTT--HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~----------~~v~i~~p~~~~~il~~--~~~~~~~~ 75 (100)
.-+++++..-. ..+.+.++..+||.|..+.+... -+|...+.+.++.++.. +...+.++
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 17 KILVRNIPFQA----NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp CEEEESCCTTC----CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred EEEEeCCCCcC----CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 44567665432 33457777889999988876432 35556899999888865 34454444
No 165
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=31.79 E-value=80 Score=18.48 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=36.3
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-------CccEEEEcCHHHHHHHHHHCCccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-------VNRALVVSNWEMAKECLTTHDKVF 72 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-------~~~~v~i~~p~~~~~il~~~~~~~ 72 (100)
.-++++++.-. ..+.+.++..+||.+..+.+. +.-+|...+++.++.++..+...+
T Consensus 43 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~ 105 (292)
T 2ghp_A 43 TVLVKNLPKSY----NQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVV 105 (292)
T ss_dssp EEEEEEECTTC----CHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEe
Confidence 34566665422 345677788899998766642 234666789999999985444333
No 166
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.74 E-value=51 Score=16.21 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCeEEEEeC-------CccEEEEcCHHHHHHHHHH-CCcccc
Q 046501 29 HRVLGAMADKYGPIFTIKMG-------VNRALVVSNWEMAKECLTT-HDKVFA 73 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~-------~~~~v~i~~p~~~~~il~~-~~~~~~ 73 (100)
.+.+.++..+||.+..+.+. +.-+|...+.+.++.++.. +...+.
T Consensus 43 e~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 43 DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp HHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred HHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45677788899988766653 2345556788888888753 343443
No 167
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.65 E-value=48 Score=15.88 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=34.9
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
-++|++..-. ..+.+.++..+||.+..+.+. +.-+|...+.+.++.++.. +...+.++
T Consensus 11 l~V~nlp~~~----~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 11 VFVGNIPYEA----TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp EEEESCCTTS----CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred EEEeCCCCcC----CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 4566655322 335567777899987666542 1234556799999888854 34444333
No 168
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.65 E-value=50 Score=16.11 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=36.8
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-++|++..-. ....+.++..+||.|..+.+. +.-+|...+.+.+..++.. +...+.+
T Consensus 27 ~l~V~nl~~~~----t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 27 TVYCGGIASGL----TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp EEEEECCSSCC----CHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34556665322 335666777899999877763 3456667899988888754 4434433
No 169
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=31.34 E-value=78 Score=18.20 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhC--CeEEEEeCC---------ccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 29 HRVLGAMADKYG--PIFTIKMGV---------NRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 29 ~~~~~~~~~~yg--~~~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.+.+.++..+|| .|..+.+.. .-+|...+.+.++.++.. +...+.++
T Consensus 82 e~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 82 DEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp HHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred HHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 456777888999 887776522 246667889888888863 33444443
No 170
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.01 E-value=47 Score=15.57 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=37.9
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC-ccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV-NRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~-~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-+++++..-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++.. +...+.+
T Consensus 12 ~l~V~nLp~~~----t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 12 KLHVGNISPTC----TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp EEEEESCCSSC----CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 45667765332 3456777888999988877654 345556788988888854 4444433
No 171
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.00 E-value=47 Score=15.56 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=34.7
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~ 67 (100)
.-++++++.-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++..
T Consensus 18 ~l~V~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 18 TVYVSNLPFSL----TNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp SEEEESCCTTS----CHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 45677766322 3345677778999988777632 346667899999888853
No 172
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=30.39 E-value=64 Score=16.97 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=31.8
Q ss_pred eeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC----c-cEEEEcCHHHHHHHHHH
Q 046501 15 VTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV----N-RALVVSNWEMAKECLTT 67 (100)
Q Consensus 15 ~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~----~-~~v~i~~p~~~~~il~~ 67 (100)
++||+..-. ..+.+.++..+||.|..+.+.. . -+|...+++.++..+..
T Consensus 32 ~V~NL~~~v----te~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 32 IVENLFYPV----TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEESCCSCC----CHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred EECCCCCCC----CHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Confidence 466664322 3456778889999987776533 2 56667788777776643
No 173
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=29.73 E-value=67 Score=16.95 Aligned_cols=57 Identities=7% Similarity=0.010 Sum_probs=34.8
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC--------CccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG--------VNRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
-+++++..-. ..+.+.++..+|| +..+.+. +.-+|...+++.++.++..+...+.++
T Consensus 49 lfV~nLp~~~----te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR 113 (139)
T 2hgn_A 49 VHMRGLPYKA----TENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR 113 (139)
T ss_dssp EECCSCCTTC----CHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSC
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCE
Confidence 3455554322 3456677778899 5466653 235667788999988885454444444
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=29.61 E-value=79 Score=17.74 Aligned_cols=50 Identities=10% Similarity=-0.062 Sum_probs=34.9
Q ss_pred cceecccc-ccCCCCChHHHHHHHHHHhCCeEEEEeC----CccEEEEcCHHHHHHHHH
Q 046501 13 WPVTGHLH-LLGGPEPPHRVLGAMADKYGPIFTIKMG----VNRALVVSNWEMAKECLT 66 (100)
Q Consensus 13 ~p~lg~~~-~~~~~~~~~~~~~~~~~~yg~~~~~~~~----~~~~v~i~~p~~~~~il~ 66 (100)
.-++||+. .-. ..+.+.++..+||.|..+.+. +.-+|...+++.++.++.
T Consensus 6 ~l~V~nL~~~~~----~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 6 VLMVYGLDQSKM----NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp EEEEECCCTTTC----CHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCcccC----CHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 45667766 322 234567778899999988764 346777789999888775
No 175
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=29.59 E-value=56 Score=16.07 Aligned_cols=57 Identities=14% Similarity=-0.012 Sum_probs=35.2
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH-CCcccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT-HDKVFA 73 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~ 73 (100)
.-+++++..-. ..+.+.++..+||.|..+.+.. .-+|...+.+.++.++.. +...+.
T Consensus 27 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 27 NLFIYHLPQEF----GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp CEEEESCCSSC----CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34566665432 3356777788999887665422 234556789988888854 343443
No 176
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.55 E-value=50 Score=15.40 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=38.6
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
..-+++++..-. ..+.+.++..+||.+..+.+. +.-+|...+++.++.++.. +...+.++
T Consensus 9 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 70 (90)
T 2dnq_A 9 VKLFIGNLPREA----TEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 70 (90)
T ss_dssp EEEEEESCCSSC----CHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred eEEEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 345677765432 334567788899998877753 4456667899998888743 33344333
No 177
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.47 E-value=55 Score=15.92 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=35.9
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC------ccEEEEcCHHHHHHHHHH-CCcccc
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV------NRALVVSNWEMAKECLTT-HDKVFA 73 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~------~~~v~i~~p~~~~~il~~-~~~~~~ 73 (100)
-+++++..-. ..+.+.++..+||.|..+.+.. .-+|...+.+.++.++.. +...+.
T Consensus 25 l~V~nLp~~~----t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 25 IYVGNLPPDI----RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4566665322 3456778889999987776532 346667899998888843 333443
No 178
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.24 E-value=57 Score=15.99 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=34.3
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCe----EEEEe-C----CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPI----FTIKM-G----VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~----~~~~~-~----~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-++|++..-. ..+.+.++..+||.+ ..+.. - +.-+|...+.+.++.++.. +...+.++
T Consensus 27 ~l~V~nLp~~~----t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 27 VLYLKNLSPRV----TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp EEEEECCCTTC----CHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred EEEEeCCCCCC----CHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 45677765322 334566677788875 44332 1 2345666899999888864 44444333
No 179
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=29.07 E-value=65 Score=16.64 Aligned_cols=38 Identities=21% Similarity=0.117 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCeEEEEeC--------CccEEEEcCHHHHHHHHH
Q 046501 29 HRVLGAMADKYGPIFTIKMG--------VNRALVVSNWEMAKECLT 66 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~--------~~~~v~i~~p~~~~~il~ 66 (100)
.+.+.++..+||.+..+.+. +.-+|...+.+.++.++.
T Consensus 14 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~ 59 (166)
T 3md3_A 14 EDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 59 (166)
T ss_dssp HHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHH
Confidence 45667788899998877652 124556679999988883
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=29.04 E-value=76 Score=17.39 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH
Q 046501 29 HRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~ 67 (100)
.+.+.++..+||.|..+.+. +.-+|...+.+.++.++..
T Consensus 42 ~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 89 (216)
T 2qfj_A 42 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89 (216)
T ss_dssp HHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH
Confidence 45677888999998877763 2246667899999988863
No 181
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.03 E-value=56 Score=15.83 Aligned_cols=51 Identities=6% Similarity=-0.077 Sum_probs=34.5
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCC-eEEEEeC----------CccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGP-IFTIKMG----------VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~-~~~~~~~----------~~~~v~i~~p~~~~~il~~ 67 (100)
.-++|++..-. ..+.+.++..+||. +..+.+. +.-+|...+++.+..++..
T Consensus 10 ~l~V~nLp~~~----t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 10 RLFIGGIPKMK----KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEEECCCTTS----CHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEEEeCCCCcC----CHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 34567665322 34566778889998 8877764 2345666899999988864
No 182
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=28.87 E-value=65 Score=16.53 Aligned_cols=58 Identities=22% Similarity=0.162 Sum_probs=36.4
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-+++++..-. ..+.+.++..+||.|..+.+. +.-+|...+++.++.++.. +...+.+
T Consensus 48 ~l~V~nLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 48 CLGVFGLSLYT----TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CBCEETCTTSC----CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 44566655322 234567777899998877653 1245566899999888864 3444433
No 183
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.71 E-value=54 Score=15.59 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=37.3
Q ss_pred cceeccccccCCCCChHHHHHHHHHHh--CCeEEEEeC-CccEEEEcCHHHHHHHHHH-CCcccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKY--GPIFTIKMG-VNRALVVSNWEMAKECLTT-HDKVFA 73 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~y--g~~~~~~~~-~~~~v~i~~p~~~~~il~~-~~~~~~ 73 (100)
.-++|++..-. ....+.++..+| |.+..+.+. +.-+|...+++.++.++.. +...+.
T Consensus 17 ~l~V~nLp~~~----t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 17 ILYVRNLMLST----SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp EEEEESCCTTC----CHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 44566665432 335567778899 888877754 4456667899999888863 444443
No 184
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=28.41 E-value=53 Score=15.36 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhC--CeEEEEeCC---------ccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 29 HRVLGAMADKYG--PIFTIKMGV---------NRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 29 ~~~~~~~~~~yg--~~~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.+.+.++..+|| .+..+.+.. .-+|...+.+.++.++.. +...+.++
T Consensus 15 ~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 15 DEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp HHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred HHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 355667778999 776554321 134455788888888743 33344444
No 185
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.40 E-value=55 Score=15.52 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=36.9
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeE-EEEeCC---------ccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIF-TIKMGV---------NRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~-~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
..-++|++..-. ..+.+.++..+||.+. .+.+.. .-+|...+++.++.++.. +...+.++
T Consensus 10 ~~l~V~nLp~~~----t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 10 ASLWMGDLEPYM----DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp SEEEECSCCTTC----CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred cEEEEeCCCCCC----CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 345677765432 3356677788999877 665421 234556799999888863 34444443
No 186
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.36 E-value=61 Score=16.06 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhCCeEEEEeCC-ccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 28 PHRVLGAMADKYGPIFTIKMGV-NRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~~~~-~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
....+.+...+||.+..+.+.. +-+|...|.+.+..++.-+...+.+|
T Consensus 28 l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 28 LIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCe
Confidence 3455667777899999888654 44555678888888776555444443
No 187
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=28.02 E-value=62 Score=16.00 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCeEEEEeCC-----------ccEEEEcCHHHHHHHHHH-CCcccccCC
Q 046501 30 RVLGAMADKYGPIFTIKMGV-----------NRALVVSNWEMAKECLTT-HDKVFASRP 76 (100)
Q Consensus 30 ~~~~~~~~~yg~~~~~~~~~-----------~~~v~i~~p~~~~~il~~-~~~~~~~~~ 76 (100)
+-+.+...+||.|..+.+.. .-+|...+++.++.++.. ++..|.+|.
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 44556667899998887642 224556788888777644 566666654
No 188
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=27.67 E-value=61 Score=15.82 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=36.0
Q ss_pred cceecccccc-CCCCChHHHHHHHHHHhCCeEEEEe-CCccEEEEcCHHHHHHHHHH-CCcccc
Q 046501 13 WPVTGHLHLL-GGPEPPHRVLGAMADKYGPIFTIKM-GVNRALVVSNWEMAKECLTT-HDKVFA 73 (100)
Q Consensus 13 ~p~lg~~~~~-~~~~~~~~~~~~~~~~yg~~~~~~~-~~~~~v~i~~p~~~~~il~~-~~~~~~ 73 (100)
.-++|++..- . ..+.+.++..+||.|..+.+ -+.-+|...+.+.++.++.. +...+.
T Consensus 29 ~l~V~nl~~~~~----t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 29 RVFIGNLNTALV----KKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp EEEECSCCCSSC----CHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCcccC----CHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456666543 2 34567778889999877665 33445556788888888744 444443
No 189
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=27.39 E-value=71 Score=16.52 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~ 67 (100)
.+.+.++..+||.+..+.+.. .-+|...+++.++.++..
T Consensus 16 ~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 16 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp HHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 455677888999987766522 245667899999998863
No 190
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.21 E-value=61 Score=15.70 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=37.2
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEE-EEeC--------CccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFT-IKMG--------VNRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~-~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
.-++|++..-. ..+.+.++..+||.+.. +.+. +.-+|...+++.++.++..+...+.++
T Consensus 17 ~l~V~nLp~~~----te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr 84 (104)
T 1wg5_A 17 FVRLRGLPFGC----SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 84 (104)
T ss_dssp EEEEESCCTTC----CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCc
Confidence 34566665433 33456677788897654 4432 235667789999999997755555444
No 191
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=26.10 E-value=67 Score=15.76 Aligned_cols=51 Identities=14% Similarity=0.009 Sum_probs=34.0
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~ 67 (100)
.-+++++..-. ..+.+.++..+||.|..+.+.. .-+|...+.+.++.++..
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 17 HVFVGDLSPEI----TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 45566665332 3355777788999987766532 235566899999988864
No 192
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.93 E-value=64 Score=15.47 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=36.4
Q ss_pred CCCCcccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHHCCccccc
Q 046501 7 PEAGGAWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 7 p~~p~~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
+..+...-+++++..-. ..+.+.++..+|| +..+.+.. .-+|...+++.++.++.-+...+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~----t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g 82 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNT----VQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGD 82 (103)
T ss_dssp CSSSCEEEEEESCCTTC----CHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CCCCCeEEEEeCCCCCC----CHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECC
Confidence 33343345677776433 2345666677886 76665431 2355668999998888434434433
No 193
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=25.92 E-value=64 Score=15.47 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=35.9
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC--------ccEEEEcCHHHHHHHHHH-CCcccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV--------NRALVVSNWEMAKECLTT-HDKVFA 73 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~--------~~~v~i~~p~~~~~il~~-~~~~~~ 73 (100)
.-++|++..-. ..+.+.++..+||.|..+.+.. .-+|...+++.++.++.. +...+.
T Consensus 17 ~l~v~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 82 (105)
T 2dnh_A 17 KLFVGMLNKQQ----SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM 82 (105)
T ss_dssp EEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 45567765432 3355677788999987766532 245566899998888753 333333
No 194
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=25.87 E-value=38 Score=12.87 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=8.1
Q ss_pred cCHHHHHHHHHH
Q 046501 56 SNWEMAKECLTT 67 (100)
Q Consensus 56 ~~p~~~~~il~~ 67 (100)
++||+.+..|.+
T Consensus 17 sspellrrcldn 28 (34)
T 2cmy_B 17 SSPELLRRCLDN 28 (34)
T ss_dssp -CCHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 578888887753
No 195
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.55 E-value=70 Score=15.78 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHhCCeEEEEeC----CccEEEEcCHHHHHHHHHH
Q 046501 28 PHRVLGAMADKYGPIFTIKMG----VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 28 ~~~~~~~~~~~yg~~~~~~~~----~~~~v~i~~p~~~~~il~~ 67 (100)
..+.+.++..+||.|..+.+. +.-+|...+++.+..++..
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 356788888999999877763 2346667899999888865
No 196
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=25.51 E-value=66 Score=15.48 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=38.8
Q ss_pred ceeccccccCCC--CChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 14 PVTGHLHLLGGP--EPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 14 p~lg~~~~~~~~--~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
-++|+++.+... ......+.+...+||.+..+.+. +.-+|...+++.++.++.. +...+.+
T Consensus 9 vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 9 IVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp EEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred EEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 456776653310 11235677778899999887764 2346667899998888853 5555554
No 197
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=25.44 E-value=95 Score=17.29 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=33.8
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-----C----ccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-----V----NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-----~----~~~v~i~~p~~~~~il~~ 67 (100)
.-++|++..-. ..+.+.++..+||.|..+.+. + .-+|...+++.++.++..
T Consensus 17 tlfVgnLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 17 SLYVGDLHPDV----TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 34667765322 345667778899998776642 1 246667899998888754
No 198
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.44 E-value=75 Score=16.13 Aligned_cols=51 Identities=14% Similarity=0.034 Sum_probs=33.7
Q ss_pred ccceecccccc-CCCCChHHHHHHHHHHhCCeEEEEeC---CccEEEEcCHHHHHHHHH
Q 046501 12 AWPVTGHLHLL-GGPEPPHRVLGAMADKYGPIFTIKMG---VNRALVVSNWEMAKECLT 66 (100)
Q Consensus 12 ~~p~lg~~~~~-~~~~~~~~~~~~~~~~yg~~~~~~~~---~~~~v~i~~p~~~~~il~ 66 (100)
..-++||+..- . ....+.++..+||.|..+.+. +.-+|-..+.+.+..++.
T Consensus 26 ~~l~V~NLp~~~~----te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 26 RVIHLSNLPHSGY----SDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CEEEEESCCCSSC----CSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred CEEEEeCCCCccC----CHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 35667777653 2 123456777899998877764 334666678888877775
No 199
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.16 E-value=62 Score=15.04 Aligned_cols=59 Identities=10% Similarity=0.069 Sum_probs=38.8
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC-ccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV-NRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~-~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
..-++|++..-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++.. +...+.+
T Consensus 10 ~~l~V~nlp~~~----t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 10 WKIFVGNVSAAC----TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp CCEEEESCCTTC----CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 355677776432 3345667778999998887654 456667899988888764 4444433
No 200
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=25.11 E-value=59 Score=14.78 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=36.5
Q ss_pred ccceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH-CCccc
Q 046501 12 AWPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT-HDKVF 72 (100)
Q Consensus 12 ~~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~ 72 (100)
..-+++++..-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++.. +...+
T Consensus 8 ~~l~V~nl~~~~----~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 8 RVLYVGGLAEEV----DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp SEEEEECCCTTC----CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CEEEEECCCCCC----CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345667665332 3456677788999988776521 245667889998888843 44444
No 201
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.47 E-value=70 Score=15.47 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=34.4
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~ 67 (100)
.-+++++..-. ..+.+.++..+||.|..+.+. +.-+|...+.+.++.++..
T Consensus 17 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 17 TVFIRNLSFDS----EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CEEEESCCTTC----CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 45667665432 334567777899999877764 1235566799999888864
No 202
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=24.31 E-value=69 Score=15.33 Aligned_cols=55 Identities=7% Similarity=0.066 Sum_probs=33.0
Q ss_pred eeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC----------ccEEEEcCHHHHHHHHHHCCccccc
Q 046501 15 VTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV----------NRALVVSNWEMAKECLTTHDKVFAS 74 (100)
Q Consensus 15 ~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~----------~~~v~i~~p~~~~~il~~~~~~~~~ 74 (100)
++|++..-.. .+.+.++..+|| +..+.+.. .-+|...+.+.++.++.-+...+.+
T Consensus 23 ~V~nLp~~~t----~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 23 FLGNLPYDVT----EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp EESCCSSCCS----SSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred EEeCCCCCCC----HHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 4566543221 224556667889 88777632 3456678999998888434444443
No 203
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=24.19 E-value=67 Score=15.13 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=32.8
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---------CccEEEEcCHHHHHHHHHH
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---------VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---------~~~~v~i~~p~~~~~il~~ 67 (100)
-++|++..-. ..+.+.++..+||.+..+.+. +.-+|...+.+.+..++..
T Consensus 5 l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 5 VYLGSIPYDQ----TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCCC----CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3456554322 345567778899999887763 2245566899988888753
No 204
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=24.15 E-value=84 Score=16.22 Aligned_cols=36 Identities=11% Similarity=-0.048 Sum_probs=25.7
Q ss_pred HHHHHHHHHhC-CeEEEEeCCccEEEEcCHHHHHHHH
Q 046501 30 RVLGAMADKYG-PIFTIKMGVNRALVVSNWEMAKECL 65 (100)
Q Consensus 30 ~~~~~~~~~yg-~~~~~~~~~~~~v~i~~p~~~~~il 65 (100)
....+|.++.| .+-++.+...|..++.++...+.+.
T Consensus 30 ~~~~~~lk~~Gi~V~RyNL~~~P~aF~~N~~V~~~L~ 66 (110)
T 3kgk_A 30 STDVQWLKQSGVQIERFNLAQQPMSFVQNEKVKAFIE 66 (110)
T ss_dssp HHHHHHHHHHTCCEEEEETTTCTTHHHHSHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEccccChHHHhcCHHHHHHHH
Confidence 34456667777 5667778888999999988555444
No 205
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=23.78 E-value=89 Score=16.38 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=34.3
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC-----C----ccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG-----V----NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~-----~----~~~v~i~~p~~~~~il~~ 67 (100)
.-+++++..-. ..+.+.++..+||.|..+.+. + .-+|...+++.++.++..
T Consensus 41 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 41 TLYVGNLSFYT----TEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34566665322 345677888999998877762 1 235667899999988874
No 206
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=23.50 E-value=67 Score=14.85 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.+.+.++..+||.+..+.+.. .-+|...+.+ +..++.. +...+.++
T Consensus 15 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~ 70 (90)
T 2ki2_A 15 SEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR 70 (90)
T ss_dssp HHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS
T ss_pred HHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe
Confidence 345666677899987776532 2355567888 7777654 33444443
No 207
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.29 E-value=65 Score=14.65 Aligned_cols=51 Identities=16% Similarity=0.005 Sum_probs=34.7
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeC---CccEEEEcCHHHHHHHHHH
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMG---VNRALVVSNWEMAKECLTT 67 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~---~~~~v~i~~p~~~~~il~~ 67 (100)
.-++|++..-. ..+.+.++..+||.+..+.+. +.-+|-..+++.++.++..
T Consensus 14 ~l~V~~l~~~~----t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 14 TLYVGGLGDTI----TETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CEEEECCTTTS----CHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred EEEEcCCCCCC----CHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 34566665322 345667778899998877754 3456667899999998864
No 208
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.08 E-value=77 Score=15.44 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=35.2
Q ss_pred ceeccccccCCCCChHHHHHHHHHHhCCeE--------EEEeCC---------ccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 14 PVTGHLHLLGGPEPPHRVLGAMADKYGPIF--------TIKMGV---------NRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 14 p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~--------~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
-+++++..-. ..+.+.++..+||.+. .+.+.. .-+|...+++.++.++.. +...+.+
T Consensus 18 l~V~nLp~~~----t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 18 IYVQGLNDSV----TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp EEEECCCTTC----CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred EEEcCCCCCC----CHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4566665322 3456777888999886 344422 235566899999888864 4444443
No 209
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=22.77 E-value=58 Score=15.24 Aligned_cols=58 Identities=10% Similarity=0.018 Sum_probs=32.5
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeE---EEE--eC----CccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIF---TIK--MG----VNRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~---~~~--~~----~~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-++++++.-. ..+.+.++..+||.+. .+. .- +.-+|...+++.++.++.. +...+.+
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 17 VIKVQNMPFTV----SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp EEEEECCCTTC----CHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34566665322 3345667778888653 221 11 2245566899998888864 4444433
No 210
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=22.59 E-value=1e+02 Score=16.68 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCeEEEEeC----CccEEEEcCHHHHHHHHH-HCCcccccC
Q 046501 29 HRVLGAMADKYGPIFTIKMG----VNRALVVSNWEMAKECLT-THDKVFASR 75 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~----~~~~v~i~~p~~~~~il~-~~~~~~~~~ 75 (100)
.+.+.++..+||.+..+.+. +.-+|...+++.++.++. -+...+.++
T Consensus 18 ~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (198)
T 1qm9_A 18 PQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK 69 (198)
T ss_dssp HHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCe
Confidence 35667788899998888764 345677789999888885 244444333
No 211
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=22.21 E-value=83 Score=15.48 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~ 67 (100)
.+.+.++..+||.+..+.+.. .-+|...+.+.++.++..
T Consensus 54 ~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 54 DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 456777778999988777642 235566789988888864
No 212
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.58 E-value=90 Score=15.64 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=33.9
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCe---EEEEe--C----CccEEEEcCHHHHHHHHHHCCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPI---FTIKM--G----VNRALVVSNWEMAKECLTTHDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~---~~~~~--~----~~~~v~i~~p~~~~~il~~~~~~~~~~ 75 (100)
.-++|++..-. ..+.+.++..+||.+ ..+.. - +.-+|...+.+.++.++..+...+.++
T Consensus 27 ~l~V~nLp~~~----te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 94 (124)
T 1wel_A 27 CVYLKGLPFEA----ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNR 94 (124)
T ss_dssp EEEEECCCTTC----CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCc
Confidence 34566665332 234566666788864 22221 1 124556679999988887555555444
No 213
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=20.94 E-value=1e+02 Score=16.06 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCeEEEEeCCc--------cEEEEcCHHHHHHHHHH
Q 046501 29 HRVLGAMADKYGPIFTIKMGVN--------RALVVSNWEMAKECLTT 67 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~~--------~~v~i~~p~~~~~il~~ 67 (100)
.+.+.+...+||.+..+.+... -+|-..+++.+..++..
T Consensus 109 ~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 109 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 4567778889999876665321 45566899998888754
No 214
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=20.80 E-value=98 Score=15.76 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.+.+.++..+||.|..+.+.. .-+|...+.+.++.++.. +...+.+
T Consensus 56 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 56 EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456777888999987766521 245666899999888864 3434433
No 215
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=20.74 E-value=1e+02 Score=16.05 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=37.9
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCCc---------cEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGVN---------RALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~---------~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-++|++..-. ..+.+.++..+||.+..+.+... -+|...+.+.++.++.. +...+.++
T Consensus 72 ~l~v~nl~~~~----~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 72 SLKVDNLTYRT----SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp EEEEESCCTTC----CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34456654322 34556677789999988876432 35667899999999865 44444443
No 216
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.67 E-value=89 Score=15.22 Aligned_cols=58 Identities=7% Similarity=0.002 Sum_probs=36.4
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC--------ccEEEEcCHHHHHHHHHH-CCccccc
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV--------NRALVVSNWEMAKECLTT-HDKVFAS 74 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~--------~~~v~i~~p~~~~~il~~-~~~~~~~ 74 (100)
.-+++++..-. ..+.+.++..+||.|..+.+.. .-+|...+.+.++.++.. +...+.+
T Consensus 17 ~l~V~nlp~~~----~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 17 TVFVANLDYKV----GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45566665322 3456777888999987665432 245666799998888763 4444433
No 217
>1m1f_A KID toxin protein; toxin-antitoxin, plasmid maintenance, post segregational killing, DNA replication, mutational analysis, CCDB; 1.40A {Escherichia coli} SCOP: b.34.6.2 PDB: 2c06_A
Probab=20.37 E-value=93 Score=15.36 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=14.5
Q ss_pred CCeEEEEeC---------CccEEEEcCHHHHH
Q 046501 40 GPIFTIKMG---------VNRALVVSNWEMAK 62 (100)
Q Consensus 40 g~~~~~~~~---------~~~~v~i~~p~~~~ 62 (100)
|+++.+.+. .+|++++++-+..+
T Consensus 4 GdI~~v~~~p~~g~E~~k~RP~lVvs~~~~n~ 35 (110)
T 1m1f_A 4 GEIWLVSLDPTAGHEQQGTRPVLIVTPAAFNR 35 (110)
T ss_dssp TEEEEEECCSCCTTSCCSEEEEEECSCHHHHH
T ss_pred cEEEEEECCCCCCcccCCcccEEEEecccccc
Confidence 566666652 25788887766544
No 218
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.22 E-value=85 Score=14.85 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=36.5
Q ss_pred cceeccccccCCCCChHHHHHHHHHHhCCeEEEEeCC---ccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 13 WPVTGHLHLLGGPEPPHRVLGAMADKYGPIFTIKMGV---NRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 13 ~p~lg~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~---~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
.-++|++..-. ..+.+.++..+||.+..+.+.. .-+|...+++.++.++.. +...+.++
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 17 RLFVGNLPPDI----TEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp EEEEESCCTTC----CHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred EEEEeCCCCCC----CHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 44567665432 3345677788999987776543 345556788888887744 44444443
No 219
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=20.20 E-value=1e+02 Score=15.62 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCeEEEEeCC---------ccEEEEcCHHHHHHHHHH
Q 046501 29 HRVLGAMADKYGPIFTIKMGV---------NRALVVSNWEMAKECLTT 67 (100)
Q Consensus 29 ~~~~~~~~~~yg~~~~~~~~~---------~~~v~i~~p~~~~~il~~ 67 (100)
.+.+.++..+||.+..+.+.. .-+|...+++.++.++..
T Consensus 77 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 77 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp HHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 356778888999998887632 245667899999888854
No 220
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.15 E-value=94 Score=15.28 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCeEEEEeC-----CccEEEEcCHHHHHHHHHH-CCcccccC
Q 046501 30 RVLGAMADKYGPIFTIKMG-----VNRALVVSNWEMAKECLTT-HDKVFASR 75 (100)
Q Consensus 30 ~~~~~~~~~yg~~~~~~~~-----~~~~v~i~~p~~~~~il~~-~~~~~~~~ 75 (100)
+.+.+...+||.|..+.+. +.-+|...+.+.++.++.. +...+.++
T Consensus 41 ~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 41 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp HHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred HHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4566777899988766552 3345556788888888754 33344333
Done!