BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046504
KNTSVFCRVPLHFAMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLN
ERGLPGGPQAARAAVKWAQRHVDKDWKEWTGDSD

High Scoring Gene Products

Symbol, full name Information P value
PRIN2
AT1G10522 		protein from Arabidopsis thaliana 1.0e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046504
        (94 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006116 - symbol:PRIN2 "AT1G10522" species:3...   310  1.0e-27   1


>TAIR|locus:505006116 [details] [associations]
            symbol:PRIN2 "AT1G10522" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009642
            "response to light intensity" evidence=IMP] [GO:0010468 "regulation
            of gene expression" evidence=IMP] [GO:0042646 "plastid nucleoid"
            evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC007067
            GO:GO:0010468 GO:GO:0009642 GO:GO:0042646 UniGene:At.42176
            UniGene:At.42177 EMBL:AY086634 EMBL:BT030627 IPI:IPI00526585
            RefSeq:NP_001077502.1 RefSeq:NP_563872.1 STRING:Q9XIK0 PaxDb:Q9XIK0
            PRIDE:Q9XIK0 EnsemblPlants:AT1G10522.1 EnsemblPlants:AT1G10522.2
            GeneID:837593 KEGG:ath:AT1G10522 TAIR:At1g10522 eggNOG:NOG307738
            HOGENOM:HOG000215006 InParanoid:Q9XIK0 OMA:FVCRRAK PhylomeDB:Q9XIK0
            ProtClustDB:CLSN2687759 Genevestigator:Q9XIK0 Uniprot:Q9XIK0
        Length = 179

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 55/64 (85%), Positives = 59/64 (92%)

Query:    28 ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87
             +C+ IF TFL SEYGGPGTLLV+PFIDMADTLNER LPGGPQAARAA+KWAQ HVDKDWK
Sbjct:   114 VCTEIFETFLRSEYGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWK 173

Query:    88 EWTG 91
             EWTG
Sbjct:   174 EWTG 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.469    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  11 22  0.50    29
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  146 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.00u 0.10s 11.10t   Elapsed:  00:00:02
  Total cpu time:  11.00u 0.10s 11.10t   Elapsed:  00:00:02
  Start:  Sat May 11 15:01:20 2013   End:  Sat May 11 15:01:22 2013

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