BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046504
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NYI|A Chain A, Crystal Structure Of An Unknown Protein From Galdieria
          Sulphuraria
 pdb|2NYI|B Chain B, Crystal Structure Of An Unknown Protein From Galdieria
          Sulphuraria
          Length = 195

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 61 ERGLPGGPQAARAAVKWAQRHVDKDWKEW 89
          E  LPG   + R A   A+RHV  D +E+
Sbjct: 66 ESALPGFQISTRRASSVAERHVSPDTREY 94


>pdb|3PFS|A Chain A, Pwwp Domain Of Human Bromodomain And Phd
          Finger-Containing Protein 3
 pdb|3PFS|B Chain B, Pwwp Domain Of Human Bromodomain And Phd
          Finger-Containing Protein 3
          Length = 158

 Score = 25.4 bits (54), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 34 NTFLHSEYGGPGTLLVLPFIDMAD 57
          N +   +Y G G  L+LPF D  D
Sbjct: 13 NLYFQGDYNGSGRSLLLPFEDRGD 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.469 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,528,868
Number of Sequences: 62578
Number of extensions: 135626
Number of successful extensions: 321
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 3
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)