Query 046504
Match_columns 94
No_of_seqs 16 out of 18
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 12:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13762 tRNA-modifying enzyme 87.3 1.7 3.8E-05 34.0 5.5 63 3-66 71-161 (322)
2 COG0405 Ggt Gamma-glutamyltran 65.1 11 0.00023 32.8 4.2 49 35-87 124-172 (539)
3 PRK09417 mogA molybdenum cofac 63.8 6.2 0.00013 29.4 2.3 14 63-76 131-144 (193)
4 PF07508 Recombinase: Recombin 61.1 15 0.00033 22.6 3.3 31 26-66 4-34 (102)
5 PF11539 DUF3228: Protein of u 57.7 5.8 0.00013 31.1 1.3 40 43-82 151-194 (197)
6 PRK14866 hypothetical protein; 54.7 24 0.00051 30.2 4.5 60 7-69 352-413 (451)
7 PRK14348 lipoate-protein ligas 53.9 4.4 9.6E-05 31.2 0.1 17 41-57 86-102 (221)
8 PRK14341 lipoate-protein ligas 53.1 4.4 9.4E-05 31.0 -0.1 17 41-57 77-93 (213)
9 PF13366 PDDEXK_3: PD-(D/E)XK 51.6 32 0.00069 24.4 4.1 40 22-69 4-45 (118)
10 cd00758 MoCF_BD MoCF_BD: molyb 51.4 12 0.00026 25.1 1.8 16 62-77 112-127 (133)
11 cd00886 MogA_MoaB MogA_MoaB fa 51.1 16 0.00035 25.2 2.5 21 62-82 125-145 (152)
12 PF07848 PaaX: PaaX-like prote 50.9 21 0.00045 22.9 2.8 37 32-76 9-45 (70)
13 PRK14345 lipoate-protein ligas 50.1 4.8 0.0001 31.2 -0.2 17 41-57 83-99 (234)
14 PRK14347 lipoate-protein ligas 49.8 6.3 0.00014 30.3 0.3 16 41-56 75-90 (209)
15 KOG1460 GDP-mannose pyrophosph 48.7 8.3 0.00018 33.1 0.9 14 37-50 129-142 (407)
16 PRK14344 lipoate-protein ligas 48.1 6.4 0.00014 30.6 0.1 17 41-57 95-111 (223)
17 smart00852 MoCF_biosynth Proba 47.8 14 0.00029 24.6 1.7 16 62-77 119-134 (135)
18 PF07707 BACK: BTB And C-termi 47.3 28 0.00061 21.0 2.9 57 22-83 17-75 (103)
19 PRK08297 L-lysine aminotransfe 47.0 79 0.0017 25.5 6.1 63 18-81 58-133 (443)
20 TIGR00177 molyb_syn molybdenum 46.4 16 0.00034 25.0 1.8 15 63-77 126-140 (144)
21 PRK13276 cell wall biosynthesi 45.7 26 0.00057 27.1 3.2 71 14-91 3-75 (224)
22 PRK05917 DNA polymerase III su 45.6 1E+02 0.0022 24.5 6.5 58 22-83 199-257 (290)
23 PRK09856 fructoselysine 3-epim 45.2 41 0.00088 24.1 3.9 18 68-85 257-274 (275)
24 PF00994 MoCF_biosynth: Probab 43.9 13 0.00028 24.9 1.1 17 63-79 122-138 (144)
25 PRK14343 lipoate-protein ligas 43.4 8.3 0.00018 30.2 0.1 16 41-56 87-102 (235)
26 PF09128 RGS-like: Regulator o 43.1 16 0.00034 27.8 1.6 28 20-49 46-73 (188)
27 PF01170 UPF0020: Putative RNA 42.6 7 0.00015 27.7 -0.4 12 40-51 35-46 (179)
28 smart00875 BACK BTB And C-term 41.3 74 0.0016 18.6 5.2 38 45-82 35-74 (101)
29 PRK09946 hypothetical protein; 41.0 36 0.00078 27.7 3.4 50 27-92 12-61 (270)
30 TIGR00214 lipB lipoate-protein 40.6 7.8 0.00017 29.1 -0.4 17 41-57 57-73 (184)
31 TIGR01366 serC_3 phosphoserine 40.2 60 0.0013 25.1 4.4 30 52-81 219-256 (361)
32 TIGR00066 g_glut_trans gamma-g 39.8 50 0.0011 27.6 4.1 43 36-82 109-151 (516)
33 KOG0212 Uncharacterized conser 38.9 60 0.0013 29.7 4.7 64 17-83 215-279 (675)
34 PF14300 DUF4375: Domain of un 38.3 40 0.00086 22.6 2.8 49 29-82 24-72 (123)
35 PF10281 Ish1: Putative stress 38.2 23 0.00049 19.8 1.4 22 54-75 8-30 (38)
36 PRK01037 trmD tRNA (guanine-N( 37.9 24 0.00053 29.6 2.1 22 40-61 53-75 (357)
37 COG2039 Pcp Pyrrolidone-carbox 37.3 18 0.00038 28.7 1.1 21 50-70 115-136 (207)
38 PLN02198 glutathione gamma-glu 37.0 54 0.0012 28.1 4.0 44 36-83 136-179 (573)
39 COG0301 ThiI Thiamine biosynth 36.8 45 0.00098 27.9 3.4 53 9-66 203-257 (383)
40 TIGR02667 moaB_proteo molybden 36.2 28 0.0006 24.7 1.9 23 63-85 129-152 (163)
41 COG0521 MoaB Molybdopterin bio 35.9 24 0.00053 26.5 1.6 14 63-76 133-146 (169)
42 cd06590 RNaseH_typeII_bacteria 35.8 30 0.00064 25.3 2.0 38 35-75 159-201 (208)
43 PF12990 DUF3874: Domain of un 35.7 60 0.0013 21.3 3.3 35 28-65 27-61 (73)
44 COG0321 LipB Lipoate-protein l 34.9 14 0.0003 29.2 0.2 17 41-57 83-99 (221)
45 COG2818 Tag 3-methyladenine DN 34.5 49 0.0011 25.7 3.1 36 30-65 110-156 (188)
46 PRK03604 moaC bifunctional mol 34.4 36 0.00078 27.3 2.4 23 62-84 279-301 (312)
47 PF15203 TMEM95: TMEM95 family 34.0 29 0.00062 26.4 1.8 21 5-32 2-22 (152)
48 cd00119 LYZ1 C-type lysozyme ( 33.9 65 0.0014 23.1 3.5 29 54-82 7-36 (123)
49 smart00540 LEM in nuclear memb 33.7 32 0.0007 20.8 1.6 17 54-70 10-26 (44)
50 PRK11119 proX glycine betaine 33.3 62 0.0014 25.5 3.6 60 24-91 265-324 (331)
51 COG0116 Predicted N6-adenine-s 32.6 21 0.00046 29.9 0.9 42 41-89 199-240 (381)
52 PRK14346 lipoate-protein ligas 31.9 16 0.00034 28.7 0.0 17 41-57 74-90 (230)
53 PF09597 IGR: IGR protein moti 31.9 75 0.0016 20.2 3.2 24 57-82 32-55 (57)
54 COG2961 ComJ Protein involved 31.0 42 0.0009 27.7 2.3 29 48-76 76-108 (279)
55 PF04753 Corona_NS2: Coronavir 30.9 20 0.00043 26.1 0.4 8 5-12 37-44 (109)
56 PRK10992 iron-sulfur cluster r 30.8 58 0.0012 24.5 2.9 55 29-91 18-72 (220)
57 TIGR00213 GmhB_yaeD D,D-heptos 30.8 38 0.00083 23.1 1.8 17 51-67 30-46 (176)
58 PF03455 dDENN: dDENN domain; 30.6 29 0.00064 20.8 1.1 11 29-39 57-67 (68)
59 PLN02180 gamma-glutamyl transp 30.3 82 0.0018 27.8 4.1 44 36-83 186-229 (639)
60 TIGR02613 mob_myst_B mobile my 30.2 72 0.0016 23.1 3.2 41 47-90 120-182 (186)
61 TIGR02909 spore_YkwD uncharact 29.7 1.1E+02 0.0024 20.1 3.9 24 62-85 19-45 (127)
62 cd06099 CS_ACL-C_CCL Citrate s 29.3 71 0.0015 23.7 3.1 55 19-76 107-170 (213)
63 TIGR03251 LAT_fam L-lysine 6-t 29.0 2.3E+02 0.005 22.6 6.1 62 18-81 51-126 (431)
64 PF04378 RsmJ: Ribosomal RNA s 28.2 28 0.00062 27.2 0.9 28 48-75 45-76 (245)
65 TIGR03652 FeS_repair_RIC iron- 28.1 89 0.0019 22.9 3.4 56 29-91 11-68 (216)
66 PLN02875 4-hydroxyphenylpyruva 27.6 62 0.0013 27.0 2.8 34 30-65 249-290 (398)
67 COG1032 Fe-S oxidoreductase [E 27.6 45 0.00097 25.1 1.8 61 4-65 212-280 (490)
68 COG1410 MetH Methionine syntha 27.5 85 0.0018 29.4 3.9 51 13-67 729-787 (842)
69 PRK10886 DnaA initiator-associ 27.5 93 0.002 23.0 3.5 35 30-65 96-138 (196)
70 cd03038 GST_N_etherase_LigE GS 27.4 46 0.001 19.9 1.6 26 41-66 7-33 (84)
71 PF03562 MltA: MltA specific i 27.4 55 0.0012 24.2 2.3 36 50-85 108-144 (158)
72 PRK09989 hypothetical protein; 27.2 39 0.00085 24.3 1.4 32 50-81 219-257 (258)
73 PTZ00215 ribose 5-phosphate is 26.9 69 0.0015 23.4 2.7 31 29-62 120-150 (151)
74 PRK14342 lipoate-protein ligas 26.6 17 0.00037 27.9 -0.6 16 41-56 77-92 (213)
75 PF03033 Glyco_transf_28: Glyc 26.2 47 0.001 20.9 1.5 15 49-63 12-26 (139)
76 cd01158 SCAD_SBCAD Short chain 26.1 73 0.0016 23.6 2.7 33 32-68 44-78 (373)
77 COG2846 Regulator of cell morp 25.9 93 0.002 25.0 3.4 66 16-88 5-70 (221)
78 PF10115 HlyU: Transcriptional 25.4 75 0.0016 22.1 2.5 35 44-84 51-85 (91)
79 PF00615 RGS: Regulator of G p 24.7 1.6E+02 0.0035 17.4 5.3 48 29-83 11-59 (118)
80 COG0336 TrmD tRNA-(guanine-N1) 24.6 94 0.002 25.1 3.2 31 33-63 38-78 (240)
81 TIGR02463 MPGP_rel mannosyl-3- 24.4 55 0.0012 22.6 1.7 19 49-67 18-36 (221)
82 KOG4458 Nitric oxide synthase- 23.9 29 0.00062 24.0 0.2 9 6-14 19-27 (78)
83 PF02771 Acyl-CoA_dh_N: Acyl-C 23.8 61 0.0013 19.7 1.6 26 32-61 45-70 (113)
84 PF09999 DUF2240: Uncharacteri 23.5 1.6E+02 0.0035 21.6 4.1 58 8-71 69-142 (144)
85 KOG3670 Phospholipase [Lipid t 23.5 64 0.0014 27.6 2.2 52 31-87 123-186 (397)
86 TIGR02640 gas_vesic_GvpN gas v 23.1 91 0.002 23.1 2.7 34 47-81 203-236 (262)
87 PF03588 Leu_Phe_trans: Leucyl 23.0 59 0.0013 24.4 1.7 36 22-64 62-97 (173)
88 TIGR00511 ribulose_e2b2 ribose 23.0 1.4E+02 0.0029 23.5 3.8 32 53-84 3-34 (301)
89 PRK05630 adenosylmethionine--8 23.0 2.9E+02 0.0064 22.1 5.7 60 18-81 53-123 (422)
90 PF00135 COesterase: Carboxyle 22.9 64 0.0014 24.6 1.9 14 70-83 188-201 (535)
91 PF14698 ASL_C2: Argininosucci 22.9 61 0.0013 20.4 1.6 27 53-79 5-33 (70)
92 PRK11613 folP dihydropteroate 22.8 1.7E+02 0.0036 23.2 4.3 68 9-76 24-108 (282)
93 cd07250 HPPD_C_like C-terminal 22.8 1.1E+02 0.0024 21.7 3.0 32 34-66 73-108 (191)
94 PF11740 KfrA_N: Plasmid repli 22.6 1.1E+02 0.0024 19.7 2.8 39 53-91 7-46 (120)
95 PRK08360 4-aminobutyrate amino 22.6 3.2E+02 0.0069 22.1 5.9 61 18-82 54-125 (443)
96 PF00627 UBA: UBA/TS-N domain; 22.4 58 0.0013 17.7 1.2 29 54-84 4-32 (37)
97 PF12320 SbcD_C: Type 5 capsul 22.2 62 0.0014 19.9 1.5 13 30-42 87-99 (100)
98 COG1018 Hmp Flavodoxin reducta 22.0 61 0.0013 24.9 1.7 15 49-63 122-136 (266)
99 COG3730 SrlA Phosphotransferas 22.0 68 0.0015 25.0 1.9 31 43-75 118-148 (176)
100 PRK14349 lipoate-protein ligas 22.0 23 0.0005 27.6 -0.6 17 41-57 72-88 (220)
101 PHA00657 crystallin beta/gamma 21.8 1.1E+02 0.0023 31.2 3.5 56 32-91 791-852 (2052)
102 PF01019 G_glu_transpept: Gamm 21.7 53 0.0011 27.2 1.4 36 36-74 92-127 (510)
103 PF03608 EII-GUT: PTS system e 21.5 62 0.0013 25.0 1.6 31 43-75 115-145 (168)
104 TIGR00821 EII-GUT PTS system, 21.2 70 0.0015 25.0 1.9 31 43-75 118-148 (181)
105 TIGR03493 cellullose_BcsF cell 20.7 74 0.0016 21.1 1.6 39 18-64 2-40 (62)
106 PF12689 Acid_PPase: Acid Phos 20.7 98 0.0021 22.7 2.5 24 53-76 51-81 (169)
107 PRK09615 ggt gamma-glutamyltra 20.7 1.5E+02 0.0034 25.5 4.0 35 36-73 157-191 (581)
108 PF10093 DUF2331: Uncharacteri 20.6 1.1E+02 0.0025 25.5 3.1 43 4-61 2-44 (374)
109 KOG2407 GPI transamidase compl 20.3 12 0.00026 33.4 -2.7 31 60-90 94-130 (575)
110 PF02568 ThiI: Thiamine biosyn 20.2 1.7E+02 0.0037 22.0 3.7 49 9-63 31-83 (197)
111 PF12025 Phage_C: Phage protei 20.1 62 0.0013 21.9 1.2 12 53-64 56-67 (68)
112 PF00307 CH: Calponin homology 20.1 80 0.0017 19.1 1.7 28 9-36 78-107 (108)
113 cd04374 RhoGAP_Graf RhoGAP_Gra 20.1 82 0.0018 23.2 2.0 24 41-64 8-44 (203)
114 PF08612 Med20: TATA-binding r 20.0 99 0.0021 22.9 2.4 28 22-50 169-196 (225)
No 1
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=87.32 E-value=1.7 Score=33.98 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=42.7
Q ss_pred cceeeecccccc----cccccch-hHHHHHHhHHHHHHHhhhhcCC----------------------Cceeechh-hhH
Q 046504 3 TSVFCRVPLHFA----MHKNYGH-VKLWSVICSLIFNTFLHSEYGG----------------------PGTLLVLP-FID 54 (94)
Q Consensus 3 ~~~~~~~~~~f~----~~~~~Gd-~~~vV~vCteIF~~FLh~eYgG----------------------pGTLlV~P-F~D 54 (94)
.-+||-.|.... ...-+=+ +++||+---+.-..|+.. |+| .|+=++.| +.+
T Consensus 71 rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g-~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~p~l~e 149 (322)
T PRK13762 71 RCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSG-YKGNPKVDREKFEEAMEPKHVAISLSGEPTLYPYLPE 149 (322)
T ss_pred cCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhc-cCCCCCCCHHHhhhccCCCEEEEeCCccccchhhHHH
Confidence 347887765432 1222333 888888886666777744 766 57777777 558
Q ss_pred HHHHHhhCCCCC
Q 046504 55 MADTLNERGLPG 66 (94)
Q Consensus 55 M~~~l~E~glPG 66 (94)
++..++++|+.-
T Consensus 150 li~~~k~~Gi~~ 161 (322)
T PRK13762 150 LIEEFHKRGFTT 161 (322)
T ss_pred HHHHHHHcCCCE
Confidence 899999999863
No 2
>COG0405 Ggt Gamma-glutamyltransferase [Amino acid transport and metabolism]
Probab=65.09 E-value=11 Score=32.80 Aligned_cols=49 Identities=29% Similarity=0.362 Sum_probs=39.5
Q ss_pred HHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhhhhhh
Q 046504 35 TFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWK 87 (94)
Q Consensus 35 ~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vDkDWk 87 (94)
+.+|++| |||...=.++=+..|-++|+|-.|. ..+++...+...-+||+
T Consensus 124 ~~~~~~y---G~l~~~~ll~PAi~lA~~Gf~v~~~-~~~~~~~~~~~l~~~~~ 172 (539)
T COG0405 124 EEAHKRY---GTLPWADLLEPAIKLARDGFPVSPR-LAALIASAAERLAKDPE 172 (539)
T ss_pred HHHHHHh---CCCcHHHHHHHHHHHHHcCCccCHH-HHHHHhhhhHHHhhChh
Confidence 4688889 6787777777788999999999988 56677777778877775
No 3
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=63.78 E-value=6.2 Score=29.40 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=12.5
Q ss_pred CCCCchHHHHHHHH
Q 046504 63 GLPGGPQAARAAVK 76 (94)
Q Consensus 63 glPGap~AARaai~ 76 (94)
.|||+|.|+|.++.
T Consensus 131 nLPGSp~a~~~~le 144 (193)
T PRK09417 131 NLPGQPKSIKETLE 144 (193)
T ss_pred ECCCCHHHHHHHHH
Confidence 39999999999886
No 4
>PF07508 Recombinase: Recombinase; InterPro: IPR011109 This domain is usually found associated with IPR006119 from INTERPRO in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.
Probab=61.07 E-value=15 Score=22.60 Aligned_cols=31 Identities=32% Similarity=0.663 Sum_probs=24.3
Q ss_pred HHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCC
Q 046504 26 SVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPG 66 (94)
Q Consensus 26 V~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPG 66 (94)
+.+..+||..|+ .-+ +...+++.|+++|+|-
T Consensus 4 a~vVr~if~~~~-~g~---------s~~~I~~~ln~~gi~~ 34 (102)
T PF07508_consen 4 AEVVREIFELYL-EGY---------SLRQIARELNEKGIPT 34 (102)
T ss_pred HHHHHHHHHHHH-cCC---------CHHHHHHHHHhcCCcc
Confidence 456789999999 322 4678999999999964
No 5
>PF11539 DUF3228: Protein of unknown function (DUF3228); InterPro: IPR021610 This family of proteins has no known function. ; PDB: 2PD0_B 4FBD_B.
Probab=57.68 E-value=5.8 Score=31.11 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=22.7
Q ss_pred CCceeechhhhHHHHHH-hh---CCCCCchHHHHHHHHHHHhhh
Q 046504 43 GPGTLLVLPFIDMADTL-NE---RGLPGGPQAARAAVKWAQRHV 82 (94)
Q Consensus 43 GpGTLlV~PF~DM~~~l-~E---~glPGap~AARaai~WAq~~v 82 (94)
.|.+++|.|.|=|+.+| +| .|.|..-.+=++|+..=++|+
T Consensus 151 e~~E~PM~PITmmRNALG~eEGGSGVpLDRekY~~SV~yW~~ha 194 (197)
T PF11539_consen 151 EDYELPMQPITMMRNALGIEEGGSGVPLDREKYLESVEYWSKHA 194 (197)
T ss_dssp SSS-----HHHHHHTTS-CCCTS------HHHHHHHHHHHTTEE
T ss_pred CCCCCCCccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHhCc
Confidence 47789999999999999 66 556666778888887655553
No 6
>PRK14866 hypothetical protein; Provisional
Probab=54.69 E-value=24 Score=30.19 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=45.1
Q ss_pred eecccccccccccch-hHHHHHHhHHHHHHHhhhhcCCCceeechhh-hHHHHHHhhCCCCCchH
Q 046504 7 CRVPLHFAMHKNYGH-VKLWSVICSLIFNTFLHSEYGGPGTLLVLPF-IDMADTLNERGLPGGPQ 69 (94)
Q Consensus 7 ~~~~~~f~~~~~~Gd-~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF-~DM~~~l~E~glPGap~ 69 (94)
+-.++-|...+- + .+++|+-|.+|..+=-.++|-+=+.|...|= +| .+.+++.|+|.+|.
T Consensus 352 ~~~~~~~~~~~~--~~~~~lv~~~~~~l~~~y~~~~~~~~~l~~~~~kfd-~eKa~~lGIp~Gp~ 413 (451)
T PRK14866 352 LGGFIAFEAADS--DIREDLVDLCVKVLKEKYDSVYRGDNELVIRKERFD-PELARKLGVPEGPA 413 (451)
T ss_pred ecceEEecCccc--hhHHHHHHHHHHHHHhhceeEEecCceEEecCCCcC-HHHHHHcCCCCchH
Confidence 334455555554 5 8999999999999888899988887777665 44 45688899997774
No 7
>PRK14348 lipoate-protein ligase B; Provisional
Probab=53.94 E-value=4.4 Score=31.23 Aligned_cols=17 Identities=35% Similarity=1.021 Sum_probs=14.8
Q ss_pred cCCCceeechhhhHHHH
Q 046504 41 YGGPGTLLVLPFIDMAD 57 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~~ 57 (94)
|=|||-|.+-|.+|+..
T Consensus 86 yHGPGQlV~Ypil~L~~ 102 (221)
T PRK14348 86 YHGPGQLVCYPILNLEE 102 (221)
T ss_pred EECCCeEEEEEEEEccc
Confidence 67899999999999754
No 8
>PRK14341 lipoate-protein ligase B; Provisional
Probab=53.07 E-value=4.4 Score=31.04 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=14.8
Q ss_pred cCCCceeechhhhHHHH
Q 046504 41 YGGPGTLLVLPFIDMAD 57 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~~ 57 (94)
|=|||-|.+-|.+|+..
T Consensus 77 yHGPGQlV~YpIl~L~~ 93 (213)
T PRK14341 77 YHGPGQRVAYVMLDLKR 93 (213)
T ss_pred EECCCeEEEEEEEEccc
Confidence 67899999999999754
No 9
>PF13366 PDDEXK_3: PD-(D/E)XK nuclease superfamily
Probab=51.62 E-value=32 Score=24.36 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=27.9
Q ss_pred hHHHHHHhHHHHHHHhhhhcCCCceeechhh--hHHHHHHhhCCCCCchH
Q 046504 22 VKLWSVICSLIFNTFLHSEYGGPGTLLVLPF--IDMADTLNERGLPGGPQ 69 (94)
Q Consensus 22 ~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF--~DM~~~l~E~glPGap~ 69 (94)
..+|++.|-+++++. |||=| |.. --|..+|++||+|=..|
T Consensus 4 ~~~Iigaa~~Vh~~L------G~G~l--E~vYe~aL~~EL~~~gi~~~~q 45 (118)
T PF13366_consen 4 TYEIIGAAFEVHNEL------GPGFL--ESVYEEALEIELEKRGIPVERQ 45 (118)
T ss_pred HHHHHHHHHHHHHHh------CCCcc--HHHHHHHHHHHHHHCCCCeEEe
Confidence 467899998887763 56633 333 34788999999985543
No 10
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=51.43 E-value=12 Score=25.10 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.3
Q ss_pred CCCCCchHHHHHHHHH
Q 046504 62 RGLPGGPQAARAAVKW 77 (94)
Q Consensus 62 ~glPGap~AARaai~W 77 (94)
-+|||.|.|++.++..
T Consensus 112 ~~LPG~p~a~~~~~~~ 127 (133)
T cd00758 112 INLPGSPKSALTTFEA 127 (133)
T ss_pred EECCCCHHHHHHHHHH
Confidence 3799999999988754
No 11
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=51.15 E-value=16 Score=25.16 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=16.5
Q ss_pred CCCCCchHHHHHHHHHHHhhh
Q 046504 62 RGLPGGPQAARAAVKWAQRHV 82 (94)
Q Consensus 62 ~glPGap~AARaai~WAq~~v 82 (94)
-+|||.|.||+.++.+..-.+
T Consensus 125 ~~LPG~P~aa~~~~~~v~P~l 145 (152)
T cd00886 125 FNLPGSPKAVREALEVILPEL 145 (152)
T ss_pred EECCCCHHHHHHHHHHHHHHH
Confidence 389999999998887755444
No 12
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=50.87 E-value=21 Score=22.89 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=23.5
Q ss_pred HHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHH
Q 046504 32 IFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVK 76 (94)
Q Consensus 32 IF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~ 76 (94)
+|++++.. .| +++.+ -+....+++-|+. ++|+|.||.
T Consensus 9 l~Gdy~~~-~g--~~i~~---~~Li~ll~~~Gv~--e~avR~als 45 (70)
T PF07848_consen 9 LLGDYLRP-RG--GWIWV---ASLIRLLAAFGVS--ESAVRTALS 45 (70)
T ss_dssp HHHHHCCT-TT--S-EEH---HHHHHHHCCTT----HHHHHHHHH
T ss_pred HHHHHhcc-CC--CceeH---HHHHHHHHHcCCC--hHHHHHHHH
Confidence 67777766 54 55544 4555666777764 799999985
No 13
>PRK14345 lipoate-protein ligase B; Provisional
Probab=50.11 E-value=4.8 Score=31.20 Aligned_cols=17 Identities=41% Similarity=0.921 Sum_probs=14.9
Q ss_pred cCCCceeechhhhHHHH
Q 046504 41 YGGPGTLLVLPFIDMAD 57 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~~ 57 (94)
|=|||.|.+-|.+|+..
T Consensus 83 yHGPGQLV~YpIldL~~ 99 (234)
T PRK14345 83 WHGPGQLVGYPIIKLAE 99 (234)
T ss_pred EeCCCeEEEEEEEecCC
Confidence 66899999999999863
No 14
>PRK14347 lipoate-protein ligase B; Provisional
Probab=49.75 E-value=6.3 Score=30.27 Aligned_cols=16 Identities=31% Similarity=0.957 Sum_probs=14.6
Q ss_pred cCCCceeechhhhHHH
Q 046504 41 YGGPGTLLVLPFIDMA 56 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~ 56 (94)
|=|||.|.+-|.+|+.
T Consensus 75 yHGPGQlV~YpIldL~ 90 (209)
T PRK14347 75 FHGPGQRVIYPILNLA 90 (209)
T ss_pred EeCCCcEEEEEEEecc
Confidence 7789999999999985
No 15
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=48.70 E-value=8.3 Score=33.07 Aligned_cols=14 Identities=64% Similarity=1.013 Sum_probs=12.3
Q ss_pred hhhhcCCCceeech
Q 046504 37 LHSEYGGPGTLLVL 50 (94)
Q Consensus 37 Lh~eYgGpGTLlV~ 50 (94)
.|++|||+||||+.
T Consensus 129 ahr~~g~~~tll~t 142 (407)
T KOG1460|consen 129 AHRRYGGIGTLLVT 142 (407)
T ss_pred HHhhcCCceEEEEE
Confidence 47899999999986
No 16
>PRK14344 lipoate-protein ligase B; Provisional
Probab=48.07 E-value=6.4 Score=30.59 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.8
Q ss_pred cCCCceeechhhhHHHH
Q 046504 41 YGGPGTLLVLPFIDMAD 57 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~~ 57 (94)
|=|||.|.+-|.+|+..
T Consensus 95 yHGPGQLV~YpIl~L~~ 111 (223)
T PRK14344 95 HHMPGQLVTYLVLDLRR 111 (223)
T ss_pred EECCCcEEEEEEEEccc
Confidence 67899999999999764
No 17
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=47.83 E-value=14 Score=24.55 Aligned_cols=16 Identities=56% Similarity=0.866 Sum_probs=13.0
Q ss_pred CCCCCchHHHHHHHHH
Q 046504 62 RGLPGGPQAARAAVKW 77 (94)
Q Consensus 62 ~glPGap~AARaai~W 77 (94)
-+|||.|.+|+.++.+
T Consensus 119 ~~LPG~P~~~~~~~~~ 134 (135)
T smart00852 119 FGLPGSPVAARAMLEL 134 (135)
T ss_pred EECCCCHHHHHHHHHh
Confidence 4799999999887654
No 18
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=47.32 E-value=28 Score=20.99 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=39.2
Q ss_pred hHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCC--CchHHHHHHHHHHHhhhh
Q 046504 22 VKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLP--GGPQAARAAVKWAQRHVD 83 (94)
Q Consensus 22 ~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glP--Gap~AARaai~WAq~~vD 83 (94)
.++......+-|.+.+.++ .++=.|+-++...|+...|. ---+.-.+++.|.+.+..
T Consensus 17 ~~~~~~~i~~nf~~v~~~~-----~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 17 AEACLRFIAKNFNEVSKSD-----EFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHHTHHHHTTSH-----HHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHHHHccch-----hhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 4445555566666666542 57778999999999988774 335788999999998765
No 19
>PRK08297 L-lysine aminotransferase; Provisional
Probab=46.98 E-value=79 Score=25.49 Aligned_cols=63 Identities=13% Similarity=-0.009 Sum_probs=40.8
Q ss_pred ccch-hHHHHH--HhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCC----------chHHHHHHHHHHHhh
Q 046504 18 NYGH-VKLWSV--ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPG----------GPQAARAAVKWAQRH 81 (94)
Q Consensus 18 ~~Gd-~~~vV~--vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPG----------ap~AARaai~WAq~~ 81 (94)
++|. -.+|++ .=.+-..+..+. .+.+....-+|+++.+..|.+.-.|+ ++.|.-+||+.|+.|
T Consensus 58 ~lGh~~p~v~~~~ai~~ql~~l~~~-~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~ 133 (443)
T PRK08297 58 ALGMNHPALADDPEFRAELGRAALN-KPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDW 133 (443)
T ss_pred cCCCCChHHhhHHHHHHHHHHhhhh-ccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHH
Confidence 5676 556664 333333443322 33444566789999999988764232 699999999999876
No 20
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=46.43 E-value=16 Score=25.00 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHH
Q 046504 63 GLPGGPQAARAAVKW 77 (94)
Q Consensus 63 glPGap~AARaai~W 77 (94)
+|||.|.+|+.++..
T Consensus 126 ~LPG~P~aa~~~~~~ 140 (144)
T TIGR00177 126 GLPGNPVSALVTFEV 140 (144)
T ss_pred ECCCCHHHHHHHHHH
Confidence 899999999998764
No 21
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=45.68 E-value=26 Score=27.12 Aligned_cols=71 Identities=10% Similarity=-0.090 Sum_probs=40.7
Q ss_pred ccccccchhHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHH-hhCCCCCchHHHHHHHHHHHhh-hhhhhhhhcC
Q 046504 14 AMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTL-NERGLPGGPQAARAAVKWAQRH-VDKDWKEWTG 91 (94)
Q Consensus 14 ~~~~~~Gd~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l-~E~glPGap~AARaai~WAq~~-vDkDWk~Wt~ 91 (94)
.++...||+.+-.--.++||..|=..=.+| | ..-...++ +++|+......+.---.-++.. -..||+.|..
T Consensus 3 tk~~tigeIv~~~P~aa~VF~~~gIdfCcg-g------~~tLeeA~~~~~gld~~~ll~eLn~~~~~~~~~~~~~~~~~~ 75 (224)
T PRK13276 3 NKNDIVADVVTDYPKAADIFRSVGIDFCCG-G------QVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNV 75 (224)
T ss_pred CCcCCHHHHHHhCccHHHHHHHcCCCcCCC-C------ChhHHHHHHHHcCCCHHHHHHHHHHHhhccccCccChhhCCH
Confidence 456667774444455578999876663555 4 33345666 8899986543333221111111 2268999974
No 22
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=45.55 E-value=1e+02 Score=24.51 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=40.7
Q ss_pred hHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCch-HHHHHHHHHHHhhhh
Q 046504 22 VKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGP-QAARAAVKWAQRHVD 83 (94)
Q Consensus 22 ~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap-~AARaai~WAq~~vD 83 (94)
.+.+.+.+..+|++-|+-.+|+...+++ +.|..+.+++. +..+ ......|.=|+++++
T Consensus 199 ~~~~L~~ll~~~RD~l~~~~~~~~~~l~--~~d~~~~l~~~--~~~~l~~~i~~i~~a~~~l~ 257 (290)
T PRK05917 199 TKAMLEVLLQLFRDRFLLALKVPASALA--YPDLLKEILTL--PVLPLEKVLSIIERAVQALD 257 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhc--cHHHHHHHHhc--ccccHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999998777 77888888762 3332 233344444444443
No 23
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.20 E-value=41 Score=24.07 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhhhhhh
Q 046504 68 PQAARAAVKWAQRHVDKD 85 (94)
Q Consensus 68 p~AARaai~WAq~~vDkD 85 (94)
-++||.|+.|-+..++.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~ 274 (275)
T PRK09856 257 RLYARQALERFRALLPED 274 (275)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 578999999988877765
No 24
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=43.91 E-value=13 Score=24.90 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHHHH
Q 046504 63 GLPGGPQAARAAVKWAQ 79 (94)
Q Consensus 63 glPGap~AARaai~WAq 79 (94)
+|||.|.+++.++.+.-
T Consensus 122 ~LPG~P~~~~~~~~~~v 138 (144)
T PF00994_consen 122 GLPGNPVAAKVMLEVLV 138 (144)
T ss_dssp EE-SSHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHH
Confidence 79999999999987643
No 25
>PRK14343 lipoate-protein ligase B; Provisional
Probab=43.41 E-value=8.3 Score=30.24 Aligned_cols=16 Identities=31% Similarity=0.839 Sum_probs=14.2
Q ss_pred cCCCceeechhhhHHH
Q 046504 41 YGGPGTLLVLPFIDMA 56 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~ 56 (94)
|=|||.|.+-|++|+.
T Consensus 87 yHGPGQLV~YpIl~L~ 102 (235)
T PRK14343 87 YHGPGQVVAYLLLDLR 102 (235)
T ss_pred EeCCCeEEEEEEEEcc
Confidence 6789999999999975
No 26
>PF09128 RGS-like: Regulator of G protein signalling-like domain; InterPro: IPR015212 This entry represents a domain consisting of twelve helices that fold into a compact structure that contains the overall structural scaffold observed in other regulator of G protein signalling (RGS) proteins and three additional helical elements that pack closely to it. Helices 1-9 comprise the RGS fold, in which helices 4-7 form a classic antiparallel bundle adjacent to the other helices. Like other RGS structures, helices 7 and 8 span the length of the folded domain and form essentially one continuous helix with a kink in the middle. Helices 10-12 form an apparently stable C-terminal extension of the structural domain, and although other RGS proteins lack this structure, these elements are intimately associated with the rest of the structural framework by hydrophobic interactions. This domain binds to active G-alpha proteins, promoting GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. ; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0005737 cytoplasm; PDB: 3CX6_B 3CX8_B 3CX7_B 1HTJ_F 1SHZ_C 3AB3_D 1IAP_A.
Probab=43.12 E-value=16 Score=27.78 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=19.0
Q ss_pred chhHHHHHHhHHHHHHHhhhhcCCCceeec
Q 046504 20 GHVKLWSVICSLIFNTFLHSEYGGPGTLLV 49 (94)
Q Consensus 20 Gd~~~vV~vCteIF~~FLh~eYgGpGTLlV 49 (94)
|...++...|-|||++||.+ |.|=-+-|
T Consensus 46 ~~~Ke~rk~~~ei~stFL~~--~ApL~v~v 73 (188)
T PF09128_consen 46 GNAKEMRKWAYEIHSTFLDP--GAPLRVNV 73 (188)
T ss_dssp S-TTCHHHHHHHHHHHHTST--T-TT----
T ss_pred cCHHHHHHHHHHHHHHHcCC--CCCceecC
Confidence 33888999999999999998 55544433
No 27
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=42.65 E-value=7 Score=27.72 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=9.3
Q ss_pred hcCCCceeechh
Q 046504 40 EYGGPGTLLVLP 51 (94)
Q Consensus 40 eYgGpGTLlV~P 51 (94)
=+||+||+|+|=
T Consensus 35 P~CGsGtiliEa 46 (179)
T PF01170_consen 35 PFCGSGTILIEA 46 (179)
T ss_dssp TT-TTSHHHHHH
T ss_pred cCCCCCHHHHHH
Confidence 489999999884
No 28
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=41.25 E-value=74 Score=18.63 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=30.2
Q ss_pred ceeechhhhHHHHHHhhCCCC--CchHHHHHHHHHHHhhh
Q 046504 45 GTLLVLPFIDMADTLNERGLP--GGPQAARAAVKWAQRHV 82 (94)
Q Consensus 45 GTLlV~PF~DM~~~l~E~glP--Gap~AARaai~WAq~~v 82 (94)
..++-.|+..|...|+...|- ..-+.-.|++.|++.+.
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCH
Confidence 456777999999999887774 34677899999999875
No 29
>PRK09946 hypothetical protein; Provisional
Probab=40.96 E-value=36 Score=27.75 Aligned_cols=50 Identities=30% Similarity=0.701 Sum_probs=38.0
Q ss_pred HHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhhhhhhhhcCC
Q 046504 27 VICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTGD 92 (94)
Q Consensus 27 ~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vDkDWk~Wt~~ 92 (94)
.+|+..|+-||+.-=.| |+ +.|.+++|-+.|- +.||..-|+--|..|-++
T Consensus 12 ~~~~~~yRWFlr~fp~G-g~-----Y~~v~dALv~~gr----------~dwa~slv~y~~~~~~~~ 61 (270)
T PRK09946 12 RVGAVMYRWFLRHFPRG-GS-----YADIHHALIEEGY----------TDWAESLVEYAWKKWLAD 61 (270)
T ss_pred CcchhHHHHHHHhCCCC-Cc-----HHHHHHHHHHhhh----------hhHHHHHHHHHHHhhhch
Confidence 57999999999983333 32 6788888876543 469999999999999754
No 30
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=40.64 E-value=7.8 Score=29.06 Aligned_cols=17 Identities=29% Similarity=0.741 Sum_probs=15.0
Q ss_pred cCCCceeechhhhHHHH
Q 046504 41 YGGPGTLLVLPFIDMAD 57 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~~ 57 (94)
|=|||.|.+-|.+|++.
T Consensus 57 yHGPGQLV~YpIl~L~~ 73 (184)
T TIGR00214 57 YHGPGQQVMYVILDLKR 73 (184)
T ss_pred EECCCeEEEEEEEEchh
Confidence 77899999999999764
No 31
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=40.22 E-value=60 Score=25.06 Aligned_cols=30 Identities=13% Similarity=0.438 Sum_probs=19.4
Q ss_pred hhHHHHHHhh---CCCCCchHHH-----HHHHHHHHhh
Q 046504 52 FIDMADTLNE---RGLPGGPQAA-----RAAVKWAQRH 81 (94)
Q Consensus 52 F~DM~~~l~E---~glPGap~AA-----Raai~WAq~~ 81 (94)
+.|+...+++ .+-|+.|..+ ++||.|.+..
T Consensus 219 ~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~ 256 (361)
T TIGR01366 219 FLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGN 256 (361)
T ss_pred hhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHc
Confidence 4566655554 3556666555 8888888765
No 32
>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff.
Probab=39.76 E-value=50 Score=27.63 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=33.0
Q ss_pred HhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhh
Q 046504 36 FLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHV 82 (94)
Q Consensus 36 FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~v 82 (94)
-+|+.| |+|...=.+.-+..|-|+|+|-.|.-+++ |.-.+..+
T Consensus 109 ~~~~~~---G~L~w~~ll~PAI~lA~~Gf~v~~~l~~~-~~~~~~~l 151 (516)
T TIGR00066 109 AALKKY---GTLPLKDLIEPAIKLARNGFPINEALADT-LELYEEVL 151 (516)
T ss_pred HHHHHH---ccCCHHHHHHHHHHHHHcCccCCHHHHHH-HHHHHHHH
Confidence 377889 49988888888888999999999987775 44444444
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.88 E-value=60 Score=29.69 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=40.2
Q ss_pred cccch-hHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhh
Q 046504 17 KNYGH-VKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVD 83 (94)
Q Consensus 17 ~~~Gd-~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vD 83 (94)
++-|| -++|-.+|.-..++||+.-=--|--+ -+.||...|--.---.-|.-.+-||.|-|.+|.
T Consensus 215 ~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 215 NMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhc
Confidence 45688 88999999999999999733222222 222333322222222337788889999998874
No 34
>PF14300 DUF4375: Domain of unknown function (DUF4375); PDB: 3VJZ_A.
Probab=38.27 E-value=40 Score=22.55 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=33.2
Q ss_pred hHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhh
Q 046504 29 CSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHV 82 (94)
Q Consensus 29 CteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~v 82 (94)
..-=|..|+++-|| .+.+-. +.+.+|++-|.+-.+..-|.|+.+..++.
T Consensus 24 ~NGGf~Qf~~N~~g--~~~~~~---~~~~~L~~iGa~~~a~ll~~a~~~~~~~~ 72 (123)
T PF14300_consen 24 NNGGFVQFFYNSYG--EYIFWN---EALEALRAIGAKETAKLLRKAIALFGNHG 72 (123)
T ss_dssp HHHHHHHHHHCT-H--HHHHTS---SHHHHHHTTT--HHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHhcCCc--chhhHH---HHHHHHHHcCcHHHHHHHHHHHHHHhhCC
Confidence 34448889988553 122223 55688888999999999999999988776
No 35
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=38.24 E-value=23 Score=19.84 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.7
Q ss_pred HHHHHHhhCCCCCchHH-HHHHH
Q 046504 54 DMADTLNERGLPGGPQA-ARAAV 75 (94)
Q Consensus 54 DM~~~l~E~glPGap~A-ARaai 75 (94)
|+..-|++.|+|..+.+ .|.-|
T Consensus 8 ~L~~wL~~~gi~~~~~~~~rd~L 30 (38)
T PF10281_consen 8 DLKSWLKSHGIPVPKSAKTRDEL 30 (38)
T ss_pred HHHHHHHHcCCCCCCCCCCHHHH
Confidence 67888999999998776 67654
No 36
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=37.92 E-value=24 Score=29.57 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.0
Q ss_pred hcCCCceee-chhhhHHHHHHhh
Q 046504 40 EYGGPGTLL-VLPFIDMADTLNE 61 (94)
Q Consensus 40 eYgGpGTLl-V~PF~DM~~~l~E 61 (94)
-|||+|-|| .+|+.+..+.++.
T Consensus 53 pyGG~GMvm~~epi~~a~~~~~~ 75 (357)
T PRK01037 53 PFNGEGMLLMAEPVVQAIRSVRR 75 (357)
T ss_pred CCCCCCeEechHHHHHHHHHHHh
Confidence 499999876 6899999999986
No 37
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=37.31 E-value=18 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=17.3
Q ss_pred hhhhHHHHHHhhCCCCCc-hHH
Q 046504 50 LPFIDMADTLNERGLPGG-PQA 70 (94)
Q Consensus 50 ~PF~DM~~~l~E~glPGa-p~A 70 (94)
.|.-.|..+++|+|+|.+ ++.
T Consensus 115 lPvkamv~~~~~~GiPA~vS~s 136 (207)
T COG2039 115 LPVKAMVQAIREAGIPASVSNS 136 (207)
T ss_pred CcHHHHHHHHHHcCCChhhhcc
Confidence 477799999999999997 443
No 38
>PLN02198 glutathione gamma-glutamylcysteinyltransferase
Probab=36.97 E-value=54 Score=28.09 Aligned_cols=44 Identities=11% Similarity=0.051 Sum_probs=33.3
Q ss_pred HhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhh
Q 046504 36 FLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVD 83 (94)
Q Consensus 36 FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vD 83 (94)
-+|++| |+|...=.++-+..|-|+|+|-.|.-+++ |...++.+.
T Consensus 136 ~~~~~~---G~L~w~~ll~PAI~lAr~Gf~v~~~la~~-l~~~~~~l~ 179 (573)
T PLN02198 136 TAWKQH---GKLPWKRLVRPAEKLAAEGFKISKYLYMQ-MNATRSDIL 179 (573)
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHcCCccCHHHHHH-HHHHHHHHh
Confidence 478889 59987777777888889999999886665 555555443
No 39
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=36.81 E-value=45 Score=27.94 Aligned_cols=53 Identities=25% Similarity=0.440 Sum_probs=36.4
Q ss_pred cccccccccccch-hHHHHHHhH-HHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCC
Q 046504 9 VPLHFAMHKNYGH-VKLWSVICS-LIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPG 66 (94)
Q Consensus 9 ~~~~f~~~~~~Gd-~~~vV~vCt-eIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPG 66 (94)
.++||....+=.+ ..+.+-.+. +.+ ..|||..+|.+.||++....+++.--+.
T Consensus 203 ~~v~f~~~p~~~~~a~~k~~~l~~~~~-----~~~~~~~~~~~v~f~~v~~~i~~~~~~~ 257 (383)
T COG0301 203 IPVHFGNPPYTSEKAREKVVALALLRL-----TSYGGKVRLYVVPFTEVQEEILEKVPES 257 (383)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHhhhh-----cccCCceEEEEEchHHHHHHHHhhcCcc
Confidence 3788866665555 333333343 322 3489999999999999999999865543
No 40
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=36.18 E-value=28 Score=24.69 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=17.2
Q ss_pred CCCCchHHHHHHHHH-HHhhhhhh
Q 046504 63 GLPGGPQAARAAVKW-AQRHVDKD 85 (94)
Q Consensus 63 glPGap~AARaai~W-Aq~~vDkD 85 (94)
+|||.|.||+.++.. .+..++++
T Consensus 129 ~LPG~P~aa~~~~~~~v~P~l~~~ 152 (163)
T TIGR02667 129 CLPGSTGACRTAWDKIIAAQLDAR 152 (163)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHH
Confidence 799999999998854 55555543
No 41
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=35.93 E-value=24 Score=26.51 Aligned_cols=14 Identities=50% Similarity=0.902 Sum_probs=12.1
Q ss_pred CCCCchHHHHHHHH
Q 046504 63 GLPGGPQAARAAVK 76 (94)
Q Consensus 63 glPGap~AARaai~ 76 (94)
.|||+|.|.|-++.
T Consensus 133 ~LPGSp~Avr~~l~ 146 (169)
T COG0521 133 NLPGSPGAVRDALE 146 (169)
T ss_pred EcCCChhhHHHHHH
Confidence 58999999998874
No 42
>cd06590 RNaseH_typeII_bacteria_HIII_like bacterial Ribonuclease HIII-like. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII. RNases HIII are distinguished by having a large (70-90 residues) N-terminal extension of unknown function. In addition, the active site of RNase HIII differs from that of other RNases H; replacing the fourth residue (aspartate) of the acidic "DEDD" motif with a glutamate. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes, however, no prokaryotic genomes contain the combination of both RNase HI and HIII. This mutual exclusive gen
Probab=35.81 E-value=30 Score=25.33 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=26.0
Q ss_pred HHhhhhcC-----CCceeechhhhHHHHHHhhCCCCCchHHHHHHH
Q 046504 35 TFLHSEYG-----GPGTLLVLPFIDMADTLNERGLPGGPQAARAAV 75 (94)
Q Consensus 35 ~FLh~eYg-----GpGTLlV~PF~DM~~~l~E~glPGap~AARaai 75 (94)
+.|+++|| |.||- ++|++ +..|++.|...-|+.+|-+-
T Consensus 159 ~~l~~~yg~~~~~G~g~~-~~~~~--~~~l~~~g~~~l~~~~k~~~ 201 (208)
T cd06590 159 EKLSKQYGMKLPKGASSK-VDEQA--AEIIKKYGLEELKKVAKLHF 201 (208)
T ss_pred HHHHHHhCCCCCCCCCcH-HHHHH--HHHHHHhhHhHHHHHHHHhc
Confidence 34567788 88884 44443 57788888766678887653
No 43
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=35.75 E-value=60 Score=21.33 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=25.5
Q ss_pred HhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCC
Q 046504 28 ICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLP 65 (94)
Q Consensus 28 vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glP 65 (94)
.|++||. .|++.+ |..|-..=..-+-+.|+..|+|
T Consensus 27 sa~~If~-~L~k~~--~~~l~~~~~~~FGriL~~~gi~ 61 (73)
T PF12990_consen 27 SAAEIFE-RLQKKS--PAALRGSNPNHFGRILQKLGIP 61 (73)
T ss_pred cHHHHHH-HHHHhC--ccccccCCHHHHHHHHHHcCCC
Confidence 3677996 478878 6667666667777888888776
No 44
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=34.90 E-value=14 Score=29.23 Aligned_cols=17 Identities=41% Similarity=1.005 Sum_probs=15.4
Q ss_pred cCCCceeechhhhHHHH
Q 046504 41 YGGPGTLLVLPFIDMAD 57 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~~ 57 (94)
|=|||-|.+-|.+|.++
T Consensus 83 yHGPGQ~V~Y~ildLkr 99 (221)
T COG0321 83 YHGPGQLVAYPILDLKR 99 (221)
T ss_pred EeCCCcEEEEEEEeccc
Confidence 78999999999999766
No 45
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.48 E-value=49 Score=25.70 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHHHHHhhhhcCCCceee-----------chhhhHHHHHHhhCCCC
Q 046504 30 SLIFNTFLHSEYGGPGTLL-----------VLPFIDMADTLNERGLP 65 (94)
Q Consensus 30 teIF~~FLh~eYgGpGTLl-----------V~PF~DM~~~l~E~glP 65 (94)
..=|++||.+-=+|++.-+ -++=.+|..+||++|+-
T Consensus 110 ~Gsf~~flWsf~~~~~~~~~~~~~~~~pa~t~~S~~mskaLKkrGf~ 156 (188)
T COG2818 110 FGSFSEFLWSFVGGKPSRNQVNDGSEVPASTELSDAMSKALKKRGFK 156 (188)
T ss_pred cCCHHHHHHHhcCCCcccccccchhhccccchhHHHHHHHHHHccCe
Confidence 3458889988777777655 24556899999999864
No 46
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=34.39 E-value=36 Score=27.32 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=18.8
Q ss_pred CCCCCchHHHHHHHHHHHhhhhh
Q 046504 62 RGLPGGPQAARAAVKWAQRHVDK 84 (94)
Q Consensus 62 ~glPGap~AARaai~WAq~~vDk 84 (94)
-+|||.|.|++.++.+-...+.+
T Consensus 279 ~~LPG~P~aa~~~~~~llp~l~h 301 (312)
T PRK03604 279 VALPGSPGGASDALAVLLPALFH 301 (312)
T ss_pred EECCCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999887666544
No 47
>PF15203 TMEM95: TMEM95 family
Probab=34.04 E-value=29 Score=26.43 Aligned_cols=21 Identities=38% Similarity=0.790 Sum_probs=15.5
Q ss_pred eeeecccccccccccchhHHHHHHhHHH
Q 046504 5 VFCRVPLHFAMHKNYGHVKLWSVICSLI 32 (94)
Q Consensus 5 ~~~~~~~~f~~~~~~Gd~~~vV~vCteI 32 (94)
||||+|-| +. ..++...|+|+
T Consensus 2 vfCrLpah----~L---sgRLa~lcsq~ 22 (152)
T PF15203_consen 2 VFCRLPAH----DL---SGRLARLCSQM 22 (152)
T ss_pred eeeecccc----cc---chHHHHHHHhh
Confidence 79999977 22 45677788886
No 48
>cd00119 LYZ1 C-type lysozyme (1, 4-beta-N-acetylmuramidase, LYZ) and alpha-lactalbumin (lactose synthase B protein, LA). They have a close evolutionary relationship and similar tertiary structure, however, functionally they are quite different. Lysozymes have primarily bacteriolytic function; hydrolysis of peptidoglycan of prokaryotic cell walls and transglycosylation. LA is a calcium-binding metalloprotein that is expressed exclusively in the mammary gland during lactation. LA is the regulatory subunit of the enzyme lactose synthase. The association of LA with the catalytic component of lactose synthase, galactosyltransferase, alters the acceptor substrate specificity of this glycosyltransferase, facilitating biosynthesis of lactose.
Probab=33.89 E-value=65 Score=23.06 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.1
Q ss_pred HHHHHHhhCCC-CCchHHHHHHHHHHHhhh
Q 046504 54 DMADTLNERGL-PGGPQAARAAVKWAQRHV 82 (94)
Q Consensus 54 DM~~~l~E~gl-PGap~AARaai~WAq~~v 82 (94)
+.+++|++.|+ |+.+++-=.+|.+.+...
T Consensus 7 eLa~~L~~~g~~~~~~l~~Wvcia~~ES~~ 36 (123)
T cd00119 7 ELAKELKRLGLYPGISLANWVCLAEHESGF 36 (123)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHCC
Confidence 57899999999 999999999998877643
No 49
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=33.66 E-value=32 Score=20.83 Aligned_cols=17 Identities=35% Similarity=0.759 Sum_probs=14.1
Q ss_pred HHHHHHhhCCCCCchHH
Q 046504 54 DMADTLNERGLPGGPQA 70 (94)
Q Consensus 54 DM~~~l~E~glPGap~A 70 (94)
+.+..|++.|+|.+|-.
T Consensus 10 eL~~~L~~~G~~~gPIt 26 (44)
T smart00540 10 ELRAELKQYGLPPGPIT 26 (44)
T ss_pred HHHHHHHHcCCCCCCcC
Confidence 56788999999999854
No 50
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=33.31 E-value=62 Score=25.50 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=38.1
Q ss_pred HHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhhhhhhhhcC
Q 046504 24 LWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTG 91 (94)
Q Consensus 24 ~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vDkDWk~Wt~ 91 (94)
...+-|.++. +||.+ + +|-.+=.-+|...+++.+.++ -.+.++|..|-++|-|. |+.|..
T Consensus 265 ~f~e~~Pea~-~~L~~-~----~l~~e~~~~l~~~i~~~~~~~-~~~~~aA~~Wl~~n~d~-v~~Wl~ 324 (331)
T PRK11119 265 AFAEKNPAAA-KLFEI-M----KLPLADINAQNLRMHEGESSE-ADIERHVDGWIKAHQAQ-FDGWVK 324 (331)
T ss_pred HHHHHChHHH-HHHHh-c----CCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHCHHH-HHHHHH
Confidence 3445566543 46655 2 244444456666666666554 24458889999999986 999964
No 51
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=32.58 E-value=21 Score=29.92 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=23.7
Q ss_pred cCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhhhhhhhh
Q 046504 41 YGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEW 89 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vDkDWk~W 89 (94)
.||+||+++| .+|-.++++++=.= +=+-.+=+.+..+-|+++
T Consensus 199 mCGSGTi~IE------AAl~~~niAPg~~R-~~~f~~w~~~~~~lw~~~ 240 (381)
T COG0116 199 MCGSGTILIE------AALIAANIAPGLNR-RFGFEFWDWFDKDLWDKL 240 (381)
T ss_pred CCCccHHHHH------HHHhccccCCcccc-ccchhhhhhccHHHHHHH
Confidence 7999999988 34555555544222 333333344555555554
No 52
>PRK14346 lipoate-protein ligase B; Provisional
Probab=31.92 E-value=16 Score=28.68 Aligned_cols=17 Identities=41% Similarity=1.001 Sum_probs=14.7
Q ss_pred cCCCceeechhhhHHHH
Q 046504 41 YGGPGTLLVLPFIDMAD 57 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~~ 57 (94)
|=|||-|.+-|.+|+..
T Consensus 74 yHGPGQlV~YpildL~~ 90 (230)
T PRK14346 74 YHGPGQVVAYPLIDLRR 90 (230)
T ss_pred EECCCeEEEEEEEeccc
Confidence 77899999999999753
No 53
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=31.91 E-value=75 Score=20.17 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=17.9
Q ss_pred HHHhhCCCCCchHHHHHHHHHHHhhh
Q 046504 57 DTLNERGLPGGPQAARAAVKWAQRHV 82 (94)
Q Consensus 57 ~~l~E~glPGap~AARaai~WAq~~v 82 (94)
..|||.|+| |+.=|--|.|.++|-
T Consensus 32 ~~LK~~GIp--~r~RryiL~~~ek~r 55 (57)
T PF09597_consen 32 KQLKELGIP--VRQRRYILRWREKYR 55 (57)
T ss_pred HHHHHCCCC--HHHHHHHHHHHHHHh
Confidence 468999994 677777777777763
No 54
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=31.00 E-value=42 Score=27.69 Aligned_cols=29 Identities=34% Similarity=0.611 Sum_probs=23.9
Q ss_pred echhhhHHHHHHhh----CCCCCchHHHHHHHH
Q 046504 48 LVLPFIDMADTLNE----RGLPGGPQAARAAVK 76 (94)
Q Consensus 48 lV~PF~DM~~~l~E----~glPGap~AARaai~ 76 (94)
++.|++|+...||- +--||+|.-||..+.
T Consensus 76 ~l~~yl~~i~~lN~~~~l~~YpGSP~lA~~llR 108 (279)
T COG2961 76 ELEPYLDAVRQLNPGGGLRYYPGSPLLARQLLR 108 (279)
T ss_pred HHHHHHHHHHHhCCCCCcccCCCCHHHHHHHcc
Confidence 46899999999987 448999999987653
No 55
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=30.93 E-value=20 Score=26.09 Aligned_cols=8 Identities=63% Similarity=1.398 Sum_probs=6.7
Q ss_pred eeeecccc
Q 046504 5 VFCRVPLH 12 (94)
Q Consensus 5 ~~~~~~~~ 12 (94)
-+||||++
T Consensus 37 GYCrVP~~ 44 (109)
T PF04753_consen 37 GYCRVPLK 44 (109)
T ss_pred eeEEcccH
Confidence 37999997
No 56
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=30.81 E-value=58 Score=24.50 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=35.7
Q ss_pred hHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhhhhhhhhcC
Q 046504 29 CSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTG 91 (94)
Q Consensus 29 CteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vDkDWk~Wt~ 91 (94)
.+.||+.|=-.=+||-+. -...+.+|+|+......++-.-.=++.. ..||+.|+.
T Consensus 18 ~~~vf~~~~idfCcgG~~-------~l~ea~~~~~i~~~~~~~~l~~~~~~~~-~~~~~~~~~ 72 (220)
T PRK10992 18 ATALFREYDLDFCCGGKQ-------TLARAAARKNLDIDVIEARLAALQEQPI-EKDWRSAPL 72 (220)
T ss_pred HHHHHHHcCCcccCCCCc-------hHHHHHHHcCCCHHHHHHHHHHHHhccc-cCChhhCCH
Confidence 367898876664555543 2467889999997655554333323443 679999974
No 57
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=30.80 E-value=38 Score=23.12 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=14.4
Q ss_pred hhhHHHHHHhhCCCCCc
Q 046504 51 PFIDMADTLNERGLPGG 67 (94)
Q Consensus 51 PF~DM~~~l~E~glPGa 67 (94)
-..+++..|+++|++-+
T Consensus 30 gv~e~L~~Lk~~G~~l~ 46 (176)
T TIGR00213 30 GVIDALRELKKMGYALV 46 (176)
T ss_pred CHHHHHHHHHHCCCEEE
Confidence 47889999999999865
No 58
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form a globular domain that is completely alpha helical []. Although not statistically supported it has been suggested that this domain may be similar to members of the Rho/Rac/Cdc42 GEF family [].; PDB: 3TW8_A.
Probab=30.65 E-value=29 Score=20.75 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=8.5
Q ss_pred hHHHHHHHhhh
Q 046504 29 CSLIFNTFLHS 39 (94)
Q Consensus 29 CteIF~~FLh~ 39 (94)
+||.|+.|+.+
T Consensus 57 ~TQ~F~~Fi~~ 67 (68)
T PF03455_consen 57 ETQMFEQFIEE 67 (68)
T ss_dssp T-HHHHHHHHH
T ss_pred HHHhHHHHHhc
Confidence 59999999875
No 59
>PLN02180 gamma-glutamyl transpeptidase 4
Probab=30.26 E-value=82 Score=27.82 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=32.7
Q ss_pred HhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhh
Q 046504 36 FLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVD 83 (94)
Q Consensus 36 FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vD 83 (94)
-+|++| |+|...=.+.-+..|-|+|+|-+|.-|++ |...++.+.
T Consensus 186 ~ah~ry---GkLpwa~Ll~PAI~lAr~GfpVs~~la~~-l~~~~~~l~ 229 (639)
T PLN02180 186 EAWKRY---GRLPWKPLFEPAIELARDGFVVHPYLGKA-ISSHAAMIL 229 (639)
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHhcCcccCHHHHHH-HHHHHHHHh
Confidence 467889 48987777777888889999999987765 555544443
No 60
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=30.22 E-value=72 Score=23.07 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=27.2
Q ss_pred eechhhhH---------HHHHHhhCCCCCch-------------HHHHHHHHHHHhhhhhhhhhhc
Q 046504 47 LLVLPFID---------MADTLNERGLPGGP-------------QAARAAVKWAQRHVDKDWKEWT 90 (94)
Q Consensus 47 LlV~PF~D---------M~~~l~E~glPGap-------------~AARaai~WAq~~vDkDWk~Wt 90 (94)
.-++||.| |--.|.+.|+|+.. ..=..|+..|+. +||..|-
T Consensus 120 ~~IHPF~DGNGRt~Rll~~l~L~~~g~~p~~~~~~~~~~~~~~r~~Y~~aL~~a~~---~d~~~~~ 182 (186)
T TIGR02613 120 VAIHPFPNGNGRHARLATDLLLEQQGYSPFTWGSGSLALVGDLRKEYIAALKAADR---HDYGPLL 182 (186)
T ss_pred heecCcCCCCcHHHHHHHHHHHHHCCCCCccccccchhhHHhhHHHHHHHHHHHhc---cChHHHH
Confidence 56899998 45567889987651 233456777764 3777663
No 61
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=29.68 E-value=1.1e+02 Score=20.06 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.3
Q ss_pred CCCCCc---hHHHHHHHHHHHhhhhhh
Q 046504 62 RGLPGG---PQAARAAVKWAQRHVDKD 85 (94)
Q Consensus 62 ~glPGa---p~AARaai~WAq~~vDkD 85 (94)
+|||+= |.-+++|-.||++-..++
T Consensus 19 ~Gl~pL~~~~~L~~~A~~hA~~ma~~~ 45 (127)
T TIGR02909 19 NGLKPLKADPELSKVARLKSEDMRDKN 45 (127)
T ss_pred cCCCCCccCHHHHHHHHHHHHHHHhCC
Confidence 788764 889999999999876543
No 62
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=29.31 E-value=71 Score=23.71 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=29.3
Q ss_pred cch-hHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhh--------CCCCCchHHHHHHHH
Q 046504 19 YGH-VKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNE--------RGLPGGPQAARAAVK 76 (94)
Q Consensus 19 ~Gd-~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E--------~glPGap~AARaai~ 76 (94)
||+ +-+-.|=+.++..+++++-.-.+|. .|.++++.+|++ |+|++.-..+-++|.
T Consensus 107 FGH~vy~~~DPRa~~L~~~~~~l~~~~~~---~~~~~~a~~le~~~~~~~~~r~l~~Nvd~~~a~l~ 170 (213)
T cd06099 107 FGHRVYKKYDPRATVLKKFAEELLKEDGD---DPMFELAAELEKIAEEVLYEKKLYPNVDFYSGVLY 170 (213)
T ss_pred CCCCCCCCCCcchHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Confidence 555 4444566666666666553222221 477776666543 467666554444443
No 63
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=29.01 E-value=2.3e+02 Score=22.56 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=36.7
Q ss_pred ccch-hHHHH---HHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCC-C---------CCchHHHHHHHHHHHhh
Q 046504 18 NYGH-VKLWS---VICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERG-L---------PGGPQAARAAVKWAQRH 81 (94)
Q Consensus 18 ~~Gd-~~~vV---~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~g-l---------PGap~AARaai~WAq~~ 81 (94)
++|. -.+|+ .+..|+ .+-.+. +..+....-.|+.+.+..|.+.- . ..++.|.-+||+.|+.|
T Consensus 51 ~lGh~~p~v~~~~ai~~q~-~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~ 126 (431)
T TIGR03251 51 ALGMNHPALVDDLAFRARL-GAAAVN-KPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDW 126 (431)
T ss_pred CCCCCChhhhHHHHHHHHH-HHhhhc-ccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHH
Confidence 5677 55665 344443 222111 11233445677888887776642 2 23699999999999977
No 64
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=28.24 E-value=28 Score=27.17 Aligned_cols=28 Identities=32% Similarity=0.661 Sum_probs=22.2
Q ss_pred echhhhHHHHHHhhCC----CCCchHHHHHHH
Q 046504 48 LVLPFIDMADTLNERG----LPGGPQAARAAV 75 (94)
Q Consensus 48 lV~PF~DM~~~l~E~g----lPGap~AARaai 75 (94)
++.|++|+..+++..+ -||+|.-|+..+
T Consensus 45 ~l~~yl~~v~~~n~~~~l~~YPGSP~ia~~ll 76 (245)
T PF04378_consen 45 ALQPYLDAVRALNPDGELRFYPGSPAIAARLL 76 (245)
T ss_dssp GGHHHHHHHHHHSSSSS--EEE-HHHHHHHHS
T ss_pred HHHHHHHHHHHhccCCCcCcCCCCHHHHHHhC
Confidence 4789999999998754 799999888764
No 65
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=28.13 E-value=89 Score=22.90 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=33.1
Q ss_pred hHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhh--hhhhhhhhcC
Q 046504 29 CSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRH--VDKDWKEWTG 91 (94)
Q Consensus 29 CteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~--vDkDWk~Wt~ 91 (94)
..+||..|=.. ||=.| ..-...+.+++|+......+.---.=.+.. -..||+.|+.
T Consensus 11 ~~~vf~~~gid-~cc~g------~~~l~~a~~~~g~d~~~~l~~ln~~~~~~~~~~~~~~~~~~~ 68 (216)
T TIGR03652 11 AARIFRKYGID-FCCGG------NVSLAEACKEKGLDPDEILAELNALQQEPENSGAKDWREAPL 68 (216)
T ss_pred HHHHHHHcCCC-ccCCC------cchHHHHHHHcCCCHHHHHHHHHHHHhccccccccChhhCCH
Confidence 46788887766 55334 344577888999987644333221112111 2368999874
No 66
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=27.62 E-value=62 Score=26.95 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=28.1
Q ss_pred HHHHHHHhhhhcCCCc----eeechhhhHHHHHHhhC----CCC
Q 046504 30 SLIFNTFLHSEYGGPG----TLLVLPFIDMADTLNER----GLP 65 (94)
Q Consensus 30 teIF~~FLh~eYgGpG----TLlV~PF~DM~~~l~E~----glP 65 (94)
+|| .+||.+ |+||| -|.+.=.+.-.+.|+++ |++
T Consensus 249 SqI-~eFL~~-~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~ 290 (398)
T PLN02875 249 SQI-QTYLEH-NEGPGLQHLALKSDDIFGTLREMRARSHIGGFE 290 (398)
T ss_pred ChH-HHHHHh-cCCCCeeEEEeecCCHHHHHHHHHhccccCCee
Confidence 444 689997 99999 57888888999999998 764
No 67
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=27.60 E-value=45 Score=25.12 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=34.5
Q ss_pred ceeeeccccc-ccccccch-hHHHHHHhHHHHHHHh-----hhhcCCCceeechhhhHHHH-HHhhCCCC
Q 046504 4 SVFCRVPLHF-AMHKNYGH-VKLWSVICSLIFNTFL-----HSEYGGPGTLLVLPFIDMAD-TLNERGLP 65 (94)
Q Consensus 4 ~~~~~~~~~f-~~~~~~Gd-~~~vV~vCteIF~~FL-----h~eYgGpGTLlV~PF~DM~~-~l~E~glP 65 (94)
--||.++.++ ......-+ ++++....-++..... .--||+++ +..++.+.-+. .+.+++++
T Consensus 212 C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~~~~~ 280 (490)
T COG1032 212 CRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPA-LNDEKRFELLSLELIERGLR 280 (490)
T ss_pred CCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCcc-ccchhhcccchHHHHHHhcc
Confidence 3599999998 22222222 3344445555555533 22377777 56666666554 56666664
No 68
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=27.53 E-value=85 Score=29.43 Aligned_cols=51 Identities=27% Similarity=0.419 Sum_probs=40.3
Q ss_pred cccccccch--hHHHHHHhHHHHHHHhhh----hcCCCceeechhhhHHHHHHhh--CCCCCc
Q 046504 13 FAMHKNYGH--VKLWSVICSLIFNTFLHS----EYGGPGTLLVLPFIDMADTLNE--RGLPGG 67 (94)
Q Consensus 13 f~~~~~~Gd--~~~vV~vCteIF~~FLh~----eYgGpGTLlV~PF~DM~~~l~E--~glPGa 67 (94)
|+.+|+|.- ++.+-+--+|-|.|++|. ||.|-+ -+|| |+-+-++| ||+-+|
T Consensus 729 ~a~~d~~~~i~v~a~a~rlaEAfAE~~H~rvR~e~wg~~---~e~~-~~e~l~~~~Y~GiR~a 787 (842)
T COG1410 729 FAANDDYNYIMVHALADRLAEAFAEYLHERVRKELWGYA---DEPL-DNEDLIKERYQGIRPA 787 (842)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCcc-CHHHHHhhccCCccCC
Confidence 667788877 888888889999999986 888877 6665 67788888 777555
No 69
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.49 E-value=93 Score=22.98 Aligned_cols=35 Identities=11% Similarity=0.334 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhcCCCceeec--------hhhhHHHHHHhhCCCC
Q 046504 30 SLIFNTFLHSEYGGPGTLLV--------LPFIDMADTLNERGLP 65 (94)
Q Consensus 30 teIF~~FLh~eYgGpGTLlV--------~PF~DM~~~l~E~glP 65 (94)
.++|+.-|.. ++.||.+++ .-.++++...|++|.|
T Consensus 96 ~~~f~~ql~~-~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~ 138 (196)
T PRK10886 96 DEVYAKQVRA-LGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMT 138 (196)
T ss_pred HHHHHHHHHH-cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE
Confidence 5789999997 999999987 3477888999999875
No 70
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=27.41 E-value=46 Score=19.91 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=19.0
Q ss_pred cCCCceeechhhhH-HHHHHhhCCCCC
Q 046504 41 YGGPGTLLVLPFID-MADTLNERGLPG 66 (94)
Q Consensus 41 YgGpGTLlV~PF~D-M~~~l~E~glPG 66 (94)
.|++|+...-||.- ++-+|+++|+|=
T Consensus 7 ~~~~~~~~~Sp~~~kv~~~L~~~~i~~ 33 (84)
T cd03038 7 AGKDPVRAFSPNVWKTRLALNHKGLEY 33 (84)
T ss_pred cCCCCCCCcCChhHHHHHHHHhCCCCC
Confidence 46677777778877 566788888873
No 71
>PF03562 MltA: MltA specific insert domain; InterPro: IPR005300 This group of proteins includes MltA; a membrane-bound, murein degrading transglycosylase enzyme which plays an important role in the controlled growth of the stress-bearing sacculus of Escherichia coli [, ].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 2PI8_D 2AE0_X 2PIC_A 2GAE_A 2PJJ_A 3CZB_A 2G6G_A 2PNW_A 2G5D_A.
Probab=27.38 E-value=55 Score=24.23 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=21.9
Q ss_pred hhhhHHHHHHhhCCCCCchHHHHHH-HHHHHhhhhhh
Q 046504 50 LPFIDMADTLNERGLPGGPQAARAA-VKWAQRHVDKD 85 (94)
Q Consensus 50 ~PF~DM~~~l~E~glPGap~AARaa-i~WAq~~vDkD 85 (94)
+||+-+...|.|+|.=..-++.-.+ ..|.++|-++-
T Consensus 108 ~pY~sIGr~Li~~G~i~~~~~Smq~Ir~wl~~~P~~~ 144 (158)
T PF03562_consen 108 HPYTSIGRLLIDRGEIPREQMSMQAIRAWLRAHPEEA 144 (158)
T ss_dssp S----HHHHHHHTTSS-TTS-SHHHHHHHHHHTGGGH
T ss_pred CccccHHHHHHHcCCcChhhCCHHHHHHHHHHCHHHH
Confidence 6999999999999954444444444 46999998764
No 72
>PRK09989 hypothetical protein; Provisional
Probab=27.21 E-value=39 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.377 Sum_probs=23.4
Q ss_pred hhhhHHHHHHhhCCCCCc------hHH-HHHHHHHHHhh
Q 046504 50 LPFIDMADTLNERGLPGG------PQA-ARAAVKWAQRH 81 (94)
Q Consensus 50 ~PF~DM~~~l~E~glPGa------p~A-ARaai~WAq~~ 81 (94)
.||..++.+|++.|.-|- |.. +++|+.|...+
T Consensus 219 id~~~i~~al~~~Gy~g~is~E~~~~~~~~~~~~~~~~~ 257 (258)
T PRK09989 219 INYPWLFRLFDEVGYQGWIGCEYKPRGLTEEGLGWFDAW 257 (258)
T ss_pred cCHHHHHHHHHHcCCCeEEEEEEeeCCCCHHHHHhHhhc
Confidence 467778889999887654 322 78899998654
No 73
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=26.94 E-value=69 Score=23.45 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=23.2
Q ss_pred hHHHHHHHhhhhcCCCceeechhhhHHHHHHhhC
Q 046504 29 CSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNER 62 (94)
Q Consensus 29 CteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~ 62 (94)
--+|..+||..+|.| | -=.+-+||+..++++
T Consensus 120 a~~iv~~fL~t~F~g-g--rh~~Rv~~i~~~e~~ 150 (151)
T PTZ00215 120 AKEIIDTFLSTPFEG-G--RHTERIDKISAIEEE 150 (151)
T ss_pred HHHHHHHHHcCCCCC-c--cHHHHHHHHHHHHhc
Confidence 457999999999976 4 234568888888764
No 74
>PRK14342 lipoate-protein ligase B; Provisional
Probab=26.62 E-value=17 Score=27.91 Aligned_cols=16 Identities=38% Similarity=0.930 Sum_probs=14.1
Q ss_pred cCCCceeechhhhHHH
Q 046504 41 YGGPGTLLVLPFIDMA 56 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~ 56 (94)
|=|||.|.+-|.+|+.
T Consensus 77 yHGPGQLV~YpIl~L~ 92 (213)
T PRK14342 77 YHGPGQLVMYVLLDLK 92 (213)
T ss_pred EECCCeEEEEEEEEcc
Confidence 6789999999999865
No 75
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=26.20 E-value=47 Score=20.93 Aligned_cols=15 Identities=47% Similarity=0.933 Sum_probs=12.8
Q ss_pred chhhhHHHHHHhhCC
Q 046504 49 VLPFIDMADTLNERG 63 (94)
Q Consensus 49 V~PF~DM~~~l~E~g 63 (94)
|.|++-.+.+|+++|
T Consensus 12 v~P~lala~~L~~rG 26 (139)
T PF03033_consen 12 VYPFLALARALRRRG 26 (139)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccC
Confidence 578888888888887
No 76
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=26.07 E-value=73 Score=23.60 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=23.3
Q ss_pred HHHHHhhhhcCCCceeechhhhHHHHHHhh--CCCCCch
Q 046504 32 IFNTFLHSEYGGPGTLLVLPFIDMADTLNE--RGLPGGP 68 (94)
Q Consensus 32 IF~~FLh~eYgGpGTLlV~PF~DM~~~l~E--~glPGap 68 (94)
+|+-++=+||||+|. ++.+++..+++ +..|..+
T Consensus 44 l~~l~vP~e~GG~g~----~~~~~~~v~~~l~~~~~s~~ 78 (373)
T cd01158 44 LMGIPIPEEYGGAGL----DFLAYAIAIEELAKVDASVA 78 (373)
T ss_pred CCcccCCHHHCCCCC----CHHHHHHHHHHHHhhCccHH
Confidence 677788899999984 56677777777 4444333
No 77
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=25.89 E-value=93 Score=25.00 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=46.0
Q ss_pred ccccchhHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhhhhhhh
Q 046504 16 HKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKE 88 (94)
Q Consensus 16 ~~~~Gd~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vDkDWk~ 88 (94)
+|..||+..=.---++||+.+=.. ||=-|-. -..++.+|+|+-.++..||-+-.=.++.-++||+.
T Consensus 5 dq~lg~la~~iP~A~~iFr~y~iD-FCCGG~~------~L~~Aa~~k~l~~~~i~a~L~~l~~~~~~~~dw~~ 70 (221)
T COG2846 5 DQPLGDLAISIPRAAEIFRSYDID-FCCGGKV------TLERAAAEKGLDIDEIEARLNALQQEPTPSKDWAT 70 (221)
T ss_pred cchHHHHHHhCccHHHHHHHcCCc-eecCChH------HHHHHHHHcCCCHHHHHHHHHHHHhccCcccCccc
Confidence 345565332233358999998776 6444442 34678899999999999998877777777899974
No 78
>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function. One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.
Probab=25.39 E-value=75 Score=22.10 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=25.4
Q ss_pred CceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhhh
Q 046504 44 PGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDK 84 (94)
Q Consensus 44 pGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vDk 84 (94)
-|++.++=|+- --=+|....|+..+|.|||-.+|+
T Consensus 51 ~ge~k~H~FIR------sD~~~s~edA~e~~lrKak~~IDq 85 (91)
T PF10115_consen 51 DGETKTHRFIR------SDLFPSREDAAEFMLRKAKQFIDQ 85 (91)
T ss_pred CCcEEEEEEEE------ccccCCHHHHHHHHHHHHHHHHHh
Confidence 35555555542 123678889999999999999997
No 79
>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....
Probab=24.65 E-value=1.6e+02 Score=17.37 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=29.7
Q ss_pred hHHHHHHHhhhhcCCCceeechhhhHHHHHHhh-CCCCCchHHHHHHHHHHHhhhh
Q 046504 29 CSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNE-RGLPGGPQAARAAVKWAQRHVD 83 (94)
Q Consensus 29 CteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E-~glPGap~AARaai~WAq~~vD 83 (94)
+.+.|.+||.++.++ --++...++++ +..+..++..+.|-.--+.|+.
T Consensus 11 ~~~~F~~Fl~~~~~~-------~~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~fi~ 59 (118)
T PF00615_consen 11 GLELFKEFLEKENCE-------ENLQFWLEVEEFKSSESEEQRKKLAQQIYNKFIS 59 (118)
T ss_dssp HHHHHHHHHHHTTTT-------HHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhHCCCH-------HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhc
Confidence 567999999999866 22344444554 3335556666666555555553
No 80
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.58 E-value=94 Score=25.10 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=24.5
Q ss_pred HHHHhhhhc---------CCCceee-chhhhHHHHHHhhCC
Q 046504 33 FNTFLHSEY---------GGPGTLL-VLPFIDMADTLNERG 63 (94)
Q Consensus 33 F~~FLh~eY---------gGpGTLl-V~PF~DM~~~l~E~g 63 (94)
+++|.+..| ||||-+| .+|..+.++.+++..
T Consensus 38 ~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~ 78 (240)
T COG0336 38 PRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAK 78 (240)
T ss_pred HHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHhcc
Confidence 567776555 7899876 689999999999864
No 81
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=24.36 E-value=55 Score=22.62 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=14.6
Q ss_pred chhhhHHHHHHhhCCCCCc
Q 046504 49 VLPFIDMADTLNERGLPGG 67 (94)
Q Consensus 49 V~PF~DM~~~l~E~glPGa 67 (94)
..+..+.+..|+++|+|-.
T Consensus 18 ~~~~~~~l~~l~~~gi~~~ 36 (221)
T TIGR02463 18 WQPAAPWLTRLQEAGIPVI 36 (221)
T ss_pred cHHHHHHHHHHHHCCCeEE
Confidence 4566788888888998754
No 82
>KOG4458 consensus Nitric oxide synthase-binding protein, contains PTB domain [Signal transduction mechanisms]
Probab=23.88 E-value=29 Score=23.96 Aligned_cols=9 Identities=56% Similarity=1.084 Sum_probs=7.3
Q ss_pred eeecccccc
Q 046504 6 FCRVPLHFA 14 (94)
Q Consensus 6 ~~~~~~~f~ 14 (94)
-||+|||-.
T Consensus 19 d~riplhne 27 (78)
T KOG4458|consen 19 DCRIPLHNE 27 (78)
T ss_pred cceeeccch
Confidence 499999954
No 83
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=23.78 E-value=61 Score=19.74 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=17.8
Q ss_pred HHHHHhhhhcCCCceeechhhhHHHHHHhh
Q 046504 32 IFNTFLHSEYGGPGTLLVLPFIDMADTLNE 61 (94)
Q Consensus 32 IF~~FLh~eYgGpGTLlV~PF~DM~~~l~E 61 (94)
+|+-.+-++|||.| -+++++...+++
T Consensus 45 ~~~~~~p~~~GG~~----~~~~~~~~~~e~ 70 (113)
T PF02771_consen 45 LLGLAVPEEYGGLG----LSPLELAIVLEE 70 (113)
T ss_dssp TTSTTSCGGGTSEB-----THHHHHHHHHH
T ss_pred HhhhhccccccCcc----hhhhhHHHHHHh
Confidence 45555668999988 356677766666
No 84
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=23.53 E-value=1.6e+02 Score=21.58 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=34.3
Q ss_pred eccccccccc-ccc--h-hHHHHHHhH------------HHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHH
Q 046504 8 RVPLHFAMHK-NYG--H-VKLWSVICS------------LIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAA 71 (94)
Q Consensus 8 ~~~~~f~~~~-~~G--d-~~~vV~vCt------------eIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AA 71 (94)
.||+-|.-+. +|. + .++|++..+ +| ++ ++.+||| +|.|=+=....-+|+|++=++.+.
T Consensus 69 ~iP~~FkP~~~~l~e~~~fe~ild~ia~~~g~~~~evv~~i-n~-~q~~~~~----~l~~e~aall~ake~Gvdv~~~~~ 142 (144)
T PF09999_consen 69 EIPLGFKPDEEILQERDPFERILDYIAAKTGIEKQEVVAEI-NE-LQEELGG----LLDPEAAALLYAKEKGVDVSDFAD 142 (144)
T ss_pred ccCCCCCCcHHHHhcccHHHHHHHHHHHhcCCCHHHHHHHH-HH-HHHHHhc----cCCHHHHHHHHHHHhCCCHHHHhh
Confidence 5788887542 221 1 444444443 34 33 8999987 455555555666788887665544
No 85
>KOG3670 consensus Phospholipase [Lipid transport and metabolism]
Probab=23.48 E-value=64 Score=27.58 Aligned_cols=52 Identities=33% Similarity=0.555 Sum_probs=39.9
Q ss_pred HHHHHHhhhhcC---CCceeechhhhHHHHHHhhCCCCCc-----hHHHHHHHHHHHhhh--h--hhhh
Q 046504 31 LIFNTFLHSEYG---GPGTLLVLPFIDMADTLNERGLPGG-----PQAARAAVKWAQRHV--D--KDWK 87 (94)
Q Consensus 31 eIF~~FLh~eYg---GpGTLlV~PF~DM~~~l~E~glPGa-----p~AARaai~WAq~~v--D--kDWk 87 (94)
-||+.|-.+-|| |=|+..+.++...=++ .||+ |.-||.-+.=-|++. + .|||
T Consensus 123 NIlr~f~p~l~g~s~g~~s~~~~~~s~lNvA-----~~Ga~s~Dlp~QAr~Lv~rik~~~~i~~~~dWK 186 (397)
T KOG3670|consen 123 NILRKFNPKLYGKSFGIGSVNVLRNSQLNVA-----EPGAESEDLPDQARDLVSRIKKDKEINMKNDWK 186 (397)
T ss_pred hHHhhhCcccccccccCCccccccccccccc-----cccccchhhHHHHHHHHHHHHhccCcccccceE
Confidence 399999999998 7788888888765433 5777 788898887777653 3 7887
No 86
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=23.08 E-value=91 Score=23.10 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=24.8
Q ss_pred eechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhh
Q 046504 47 LLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRH 81 (94)
Q Consensus 47 LlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~ 81 (94)
=+++-+++....+.+.++...|. .|++|.||+--
T Consensus 203 ~~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~ 236 (262)
T TIGR02640 203 DSAATIVRLVREFRASGDEITSG-LRASLMIAEVA 236 (262)
T ss_pred HHHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHH
Confidence 35677888888888655555553 99999999754
No 87
>PF03588 Leu_Phe_trans: Leucyl/phenylalanyl-tRNA protein transferase; InterPro: IPR004616 Leucyl/phenylalanyl-tRNA--protein transferase 2.3.2.6 from EC transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.; GO: 0008914 leucyltransferase activity, 0030163 protein catabolic process; PDB: 2Z3L_A 2Z3O_A 2Z3P_A 2DPT_B 2Z3M_B 2Z3N_B 2DPS_B 2Z3K_B 2CXA_A.
Probab=23.04 E-value=59 Score=24.36 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=28.2
Q ss_pred hHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCC
Q 046504 22 VKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGL 64 (94)
Q Consensus 22 ~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~gl 64 (94)
-++|+.-|.+. |. +.+||-+.++++++-..|-++|.
T Consensus 62 F~~Vi~~Ca~~-----~~--~~~~TWI~~~~~~aY~~Lh~~G~ 97 (173)
T PF03588_consen 62 FEEVIRACAEP-----RR--GQDGTWITPEMIEAYTELHELGY 97 (173)
T ss_dssp HHHHHHHHHTS-----S----STGTTS-HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHccC-----CC--CCCCCCcCHHHHHHHHHHHHcCe
Confidence 46788899775 22 67999999999999999999884
No 88
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=23.03 E-value=1.4e+02 Score=23.45 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.8
Q ss_pred hHHHHHHhhCCCCCchHHHHHHHHHHHhhhhh
Q 046504 53 IDMADTLNERGLPGGPQAARAAVKWAQRHVDK 84 (94)
Q Consensus 53 ~DM~~~l~E~glPGap~AARaai~WAq~~vDk 84 (94)
-|+.++||+..+-|||..|++|+..-...+++
T Consensus 3 ~~~~~~ik~~~vrGa~~ia~~aa~~l~~~~~~ 34 (301)
T TIGR00511 3 EETAEKIRSMEIRGAGRIARAAAAALMEQAAK 34 (301)
T ss_pred HHHHHHHHhCcccCcHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999988777666654
No 89
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=22.96 E-value=2.9e+02 Score=22.11 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=37.3
Q ss_pred ccch-hHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCC----------chHHHHHHHHHHHhh
Q 046504 18 NYGH-VKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPG----------GPQAARAAVKWAQRH 81 (94)
Q Consensus 18 ~~Gd-~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPG----------ap~AARaai~WAq~~ 81 (94)
++|. -.+|++.=++-..+..|.-+ +...-+|-.+++..|.+. +|+ ++.|..+||+.|+.+
T Consensus 53 ~lGh~~p~i~~ai~~q~~~~~~~~~---~~~~~~~~~~lae~L~~~-~p~~~~~v~f~~SGseA~e~AlklAr~~ 123 (422)
T PRK05630 53 AHGHGHPRLKAAAHKQIDTMSHVMF---GGLTHEPAIKLTRKLLNL-TDNGLDHVFYSDSGSVSVEVAIKMALQY 123 (422)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCccc---CCcCCHHHHHHHHHHHhh-CCCCcCEEEEeCCcHHHHHHHHHHHHHH
Confidence 5677 55666544333333222211 223456777888888775 343 699999999999987
No 90
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=22.94 E-value=64 Score=24.60 Aligned_cols=14 Identities=36% Similarity=0.741 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhh
Q 046504 70 AARAAVKWAQRHVD 83 (94)
Q Consensus 70 AARaai~WAq~~vD 83 (94)
=-|+||+|-|+|+.
T Consensus 188 Dq~~AL~WV~~nI~ 201 (535)
T PF00135_consen 188 DQRLALKWVQDNIA 201 (535)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred hhHHHHHHHHhhhh
Confidence 35899999999985
No 91
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=22.93 E-value=61 Score=20.38 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=16.6
Q ss_pred hHHHHHHhhCCCCCc--hHHHHHHHHHHH
Q 046504 53 IDMADTLNERGLPGG--PQAARAAVKWAQ 79 (94)
Q Consensus 53 ~DM~~~l~E~glPGa--p~AARaai~WAq 79 (94)
||+++.|-.+|+|=- =...-..+++|.
T Consensus 5 TdlAD~LVr~GipFR~AH~iVg~~V~~a~ 33 (70)
T PF14698_consen 5 TDLADYLVRKGIPFREAHHIVGRLVRLAE 33 (70)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 789999988899842 333334445543
No 92
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=22.83 E-value=1.7e+02 Score=23.20 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=46.2
Q ss_pred cccccccccccchhHHHHHHhHHHHHHHhh-hhcCC----CceeechhhhHHHH------HHhh-CCCCCc-----hHHH
Q 046504 9 VPLHFAMHKNYGHVKLWSVICSLIFNTFLH-SEYGG----PGTLLVLPFIDMAD------TLNE-RGLPGG-----PQAA 71 (94)
Q Consensus 9 ~~~~f~~~~~~Gd~~~vV~vCteIF~~FLh-~eYgG----pGTLlV~PF~DM~~------~l~E-~glPGa-----p~AA 71 (94)
-|=.|++...|.++++++.-.-+...+=.. =+-|| ||.-.|.|-.+|.+ +|++ .++|-+ |.+|
T Consensus 24 TpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va 103 (282)
T PRK11613 24 TPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVI 103 (282)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHH
Confidence 377899999999999888877554432110 13454 88777666666544 3343 378877 9999
Q ss_pred HHHHH
Q 046504 72 RAAVK 76 (94)
Q Consensus 72 Raai~ 76 (94)
++||+
T Consensus 104 ~~AL~ 108 (282)
T PRK11613 104 RESAK 108 (282)
T ss_pred HHHHH
Confidence 99996
No 93
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=22.80 E-value=1.1e+02 Score=21.72 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=26.3
Q ss_pred HHHhhhhcCCCce----eechhhhHHHHHHhhCCCCC
Q 046504 34 NTFLHSEYGGPGT----LLVLPFIDMADTLNERGLPG 66 (94)
Q Consensus 34 ~~FLh~eYgGpGT----LlV~PF~DM~~~l~E~glPG 66 (94)
.+||.. ++|||. +.|.-.......|+++|++-
T Consensus 73 ~~fl~~-~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~ 108 (191)
T cd07250 73 QEFLEY-YGGAGVQHIALATDDIFATVAALRARGVEF 108 (191)
T ss_pred HHHHHH-hCCCceeEEEEECCCHHHHHHHHHHcCCee
Confidence 577765 788985 77888999999999999754
No 94
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=22.62 E-value=1.1e+02 Score=19.71 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=22.8
Q ss_pred hHHHHHHhhCCCCCchHHHHHHHH-HHHhhhhhhhhhhcC
Q 046504 53 IDMADTLNERGLPGGPQAARAAVK-WAQRHVDKDWKEWTG 91 (94)
Q Consensus 53 ~DM~~~l~E~glPGap~AARaai~-WAq~~vDkDWk~Wt~ 91 (94)
.+..+.|-.+|-.+...+-|..|+ =+.+.+-+-|++|..
T Consensus 7 ~~Aa~~L~~~G~~pT~~~Vr~~lG~GS~~ti~~~l~~w~~ 46 (120)
T PF11740_consen 7 IEAADELLAAGKKPTVRAVRERLGGGSMSTISKHLKEWRE 46 (120)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 345556666666666666666666 445555566666643
No 95
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=22.60 E-value=3.2e+02 Score=22.07 Aligned_cols=61 Identities=23% Similarity=0.212 Sum_probs=38.2
Q ss_pred ccch-hHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCC----------CchHHHHHHHHHHHhhh
Q 046504 18 NYGH-VKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLP----------GGPQAARAAVKWAQRHV 82 (94)
Q Consensus 18 ~~Gd-~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glP----------Gap~AARaai~WAq~~v 82 (94)
++|. -.+|+..-.+-..+..| .++....-+|-++.+..|.+. +| .++.|..+||+.|+.|-
T Consensus 54 ~lGh~~p~v~~Ai~~ql~~~~~---~~~~~~~~~~~~~la~~L~~~-~p~~~~~v~f~~sGsEAve~AlklAr~~t 125 (443)
T PRK08360 54 NVGHNNPRVVKAIKEQTDKLIH---YTPIYGFPVEPLLLAEKLIEI-APGDNPKVSFGLSGSDANDGAIKFARAYT 125 (443)
T ss_pred ccCCCCHHHHHHHHHHHHhccC---ccccccCcHHHHHHHHHHHHh-CCCCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 5677 56666554443333222 222333345678888888874 23 36999999999999874
No 96
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=22.38 E-value=58 Score=17.74 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=20.3
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHHhhhhh
Q 046504 54 DMADTLNERGLPGGPQAARAAVKWAQRHVDK 84 (94)
Q Consensus 54 DM~~~l~E~glPGap~AARaai~WAq~~vDk 84 (94)
++...|.+.|+|- ..+|.|+.=+.+++++
T Consensus 4 ~~v~~L~~mGf~~--~~~~~AL~~~~~nve~ 32 (37)
T PF00627_consen 4 EKVQQLMEMGFSR--EQAREALRACNGNVER 32 (37)
T ss_dssp HHHHHHHHHTS-H--HHHHHHHHHTTTSHHH
T ss_pred HHHHHHHHcCCCH--HHHHHHHHHcCCCHHH
Confidence 4566777888874 5888888877776654
No 97
>PF12320 SbcD_C: Type 5 capsule protein repressor C-terminal domain; PDB: 3QF7_C 3QG5_D 3THN_A 3THO_B 2Q8U_B.
Probab=22.22 E-value=62 Score=19.89 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=11.1
Q ss_pred HHHHHHHhhhhcC
Q 046504 30 SLIFNTFLHSEYG 42 (94)
Q Consensus 30 teIF~~FLh~eYg 42 (94)
.++|..|+.+.||
T Consensus 87 ~elF~~f~~~~~g 99 (100)
T PF12320_consen 87 EELFEDFYQEKTG 99 (100)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHHhhC
Confidence 5799999999886
No 98
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=22.03 E-value=61 Score=24.92 Aligned_cols=15 Identities=47% Similarity=0.888 Sum_probs=13.6
Q ss_pred chhhhHHHHHHhhCC
Q 046504 49 VLPFIDMADTLNERG 63 (94)
Q Consensus 49 V~PF~DM~~~l~E~g 63 (94)
|.||+-|+..++.++
T Consensus 122 ITP~lSml~~~~~~~ 136 (266)
T COG1018 122 ITPFLSMLRTLLDRG 136 (266)
T ss_pred HhHHHHHHHHHHHhC
Confidence 789999999999876
No 99
>COG3730 SrlA Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]
Probab=21.97 E-value=68 Score=25.01 Aligned_cols=31 Identities=39% Similarity=0.690 Sum_probs=24.6
Q ss_pred CCceeechhhhHHHHHHhhCCCCCchHHHHHHH
Q 046504 43 GPGTLLVLPFIDMADTLNERGLPGGPQAARAAV 75 (94)
Q Consensus 43 GpGTLlV~PF~DM~~~l~E~glPGap~AARaai 75 (94)
-||+|.| ..-.+.-+.|-|+|-+|.|-|-.+
T Consensus 118 npgElFV--ylGIa~Gv~~lgl~~~~lAi~Y~l 148 (176)
T COG3730 118 NPGELFV--YLGIAAGVTELGLPLGPLAISYFL 148 (176)
T ss_pred CchHhhh--hhhhhhhhhhccCcccHHHHHHHH
Confidence 3777766 356677899999999999988654
No 100
>PRK14349 lipoate-protein ligase B; Provisional
Probab=21.97 E-value=23 Score=27.59 Aligned_cols=17 Identities=35% Similarity=0.839 Sum_probs=14.7
Q ss_pred cCCCceeechhhhHHHH
Q 046504 41 YGGPGTLLVLPFIDMAD 57 (94)
Q Consensus 41 YgGpGTLlV~PF~DM~~ 57 (94)
|=|||.|.+-|.+|+..
T Consensus 72 yHGPGQLV~YpIldL~~ 88 (220)
T PRK14349 72 YHGPGQVLAYTLFDLRR 88 (220)
T ss_pred EeCCCcEEEEEEEEccc
Confidence 77899999999998753
No 101
>PHA00657 crystallin beta/gamma motif-containing protein
Probab=21.77 E-value=1.1e+02 Score=31.18 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=38.1
Q ss_pred HHHHHhhhhcCCCceeechhhhHHHHHHhhCCC-----CCchHHHHHHHHHHHhhhh-hhhhhhcC
Q 046504 32 IFNTFLHSEYGGPGTLLVLPFIDMADTLNERGL-----PGGPQAARAAVKWAQRHVD-KDWKEWTG 91 (94)
Q Consensus 32 IF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~gl-----PGap~AARaai~WAq~~vD-kDWk~Wt~ 91 (94)
=||||+|. .|-.+.|-..||+..|.++-+ |-+|+..|+-+.=-.++.. +|=++|+.
T Consensus 791 D~STFvHE----~gH~fLE~~~dia~~~~~~~~~g~~l~dA~~q~~~D~~tv~dWfgvkD~~~wd~ 852 (2052)
T PHA00657 791 DLSTFLHE----SGHFFLEVQLDIATRLAEKQRAGATLIDAETEVQRDAQTLLDWFGVRDLAAWND 852 (2052)
T ss_pred cHHHHHHH----HHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHcCccchhhhcc
Confidence 38999998 788888888888888877554 4457777765443333322 57677753
No 102
>PF01019 G_glu_transpept: Gamma-glutamyltranspeptidase; InterPro: IPR000101 Gamma-glutamyltranspeptidase (2.3.2.2 from EC) (GGT) [] catalyzes the transfer of the gamma-glutamyl moiety of glutathione to an acceptor that may be an amino acid, a peptide or water (forming glutamate). GGT plays a key role in the gamma-glutamyl cycle, a pathway for the synthesis and degradation of glutathione and drug and xenobiotic detoxification []. In prokaryotes and eukaryotes, it is an enzyme that consists of two polypeptide chains, a heavy and a light subunit, processed from a single chain precursor by an autocatalytic cleavage. The active site of GGT is known to be located in the light subunit. The sequences of mammalian and bacterial GGT show a number of regions of high similarity []. Pseudomonas cephalosporin acylases (3.5.1 from EC) that convert 7-beta-(4-carboxybutanamido)-cephalosporanic acid (GL-7ACA) into 7-aminocephalosporanic acid (7ACA) and glutaric acid are evolutionary related to GGT and also show some GGT activity []. Like GGT, these GL-7ACA acylases, are also composed of two subunits. As an autocatalytic peptidase GGT belongs to MEROPS peptidase family T3 (gamma-glutamyltransferase family, clan PB(T)). The active site residue for members of this family and family T1 is C-terminal to the autolytic cleavage site. The type example is gamma-glutamyltransferase 1 from Escherichia coli. ; GO: 0003840 gamma-glutamyltransferase activity; PDB: 2DBX_A 2Z8K_D 2Z8I_B 2DBU_D 2E0X_B 2DBW_B 2E0W_B 2DG5_A 2E0Y_C 2Z8J_C ....
Probab=21.72 E-value=53 Score=27.19 Aligned_cols=36 Identities=36% Similarity=0.446 Sum_probs=24.4
Q ss_pred HhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHH
Q 046504 36 FLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAA 74 (94)
Q Consensus 36 FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaa 74 (94)
-+|++|| +|...=.+.-+..|-|.|+|-.|..|++.
T Consensus 92 ~~h~~~G---~lpw~~l~~PAI~lA~~Gf~v~~~la~~l 127 (510)
T PF01019_consen 92 EAHERYG---TLPWADLLAPAIRLARDGFPVSPSLARAL 127 (510)
T ss_dssp HHHHHH----SS-HHHHHHHHHHHHHH-EE--HHHHHHH
T ss_pred HHHHHhc---chhHHHHHHHHHHHhcCCeEechhHHhHH
Confidence 4788895 89777777777788899999998877653
No 103
>PF03608 EII-GUT: PTS system enzyme II sorbitol-specific factor; InterPro: IPR004699 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIC component.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=21.51 E-value=62 Score=24.96 Aligned_cols=31 Identities=32% Similarity=0.556 Sum_probs=25.6
Q ss_pred CCceeechhhhHHHHHHhhCCCCCchHHHHHHH
Q 046504 43 GPGTLLVLPFIDMADTLNERGLPGGPQAARAAV 75 (94)
Q Consensus 43 GpGTLlV~PF~DM~~~l~E~glPGap~AARaai 75 (94)
-||+|.| +.-.+.-+.+.|+|.+++|.|--+
T Consensus 115 NpgELFV--~lGIA~Gi~~lGl~~~~LAvrY~l 145 (168)
T PF03608_consen 115 NPGELFV--WLGIAAGITKLGLSLGDLAVRYFL 145 (168)
T ss_pred ChhHHHH--HHHHHHhHHHhCCCchHHHHHHHH
Confidence 4888876 567788899999999999999654
No 104
>TIGR00821 EII-GUT PTS system, glucitol/sorbitol-specific, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIC component.
Probab=21.17 E-value=70 Score=24.97 Aligned_cols=31 Identities=39% Similarity=0.723 Sum_probs=26.3
Q ss_pred CCceeechhhhHHHHHHhhCCCCCchHHHHHHH
Q 046504 43 GPGTLLVLPFIDMADTLNERGLPGGPQAARAAV 75 (94)
Q Consensus 43 GpGTLlV~PF~DM~~~l~E~glPGap~AARaai 75 (94)
-||+|.| +.-.+.-+.+-|||-+++|.|--+
T Consensus 118 NpgELFV--~lGIA~Git~lgl~~~~LAvrY~l 148 (181)
T TIGR00821 118 NPGELFV--YLGIANGLTTLGLPLGPLAVSYLL 148 (181)
T ss_pred ChhHHHH--HHHHHHHHHHcCCCcchHHHHHHH
Confidence 4888877 678888899999999999999654
No 105
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=20.71 E-value=74 Score=21.12 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=23.4
Q ss_pred ccchhHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCC
Q 046504 18 NYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGL 64 (94)
Q Consensus 18 ~~Gd~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~gl 64 (94)
++-|+..+|.+|.-||=- =|-|+..-+--+...+.-+-+
T Consensus 2 ~i~DilQli~lcALIf~p--------Lgyl~~r~~~r~r~~~r~~~~ 40 (62)
T TIGR03493 2 NISDILQLVLLCALIFFP--------LGYLARRSLRRIRTTLRLRLA 40 (62)
T ss_pred CHHHHHHHHHHHHHHHHh--------HHHHHHhhhHHHHHHHHHhcC
Confidence 355778899999999831 122444555555555544444
No 106
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=20.70 E-value=98 Score=22.67 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=14.3
Q ss_pred hHHHHHHhhCCCCCc-------hHHHHHHHH
Q 046504 53 IDMADTLNERGLPGG-------PQAARAAVK 76 (94)
Q Consensus 53 ~DM~~~l~E~glPGa-------p~AARaai~ 76 (94)
-+.+..|+++|..-| |..||.+|.
T Consensus 51 ~~iL~~L~~~gv~lavASRt~~P~~A~~~L~ 81 (169)
T PF12689_consen 51 PEILQELKERGVKLAVASRTDEPDWARELLK 81 (169)
T ss_dssp HHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence 356667777888765 666666654
No 107
>PRK09615 ggt gamma-glutamyltranspeptidase; Reviewed
Probab=20.70 E-value=1.5e+02 Score=25.52 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=28.4
Q ss_pred HhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHH
Q 046504 36 FLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARA 73 (94)
Q Consensus 36 FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARa 73 (94)
-+|++| |+|...=.+.-+..|-|+|+|-.|.-+++
T Consensus 157 ~~~~r~---G~L~w~~ll~PAI~lA~~Gf~v~~~la~~ 191 (581)
T PRK09615 157 LALDKY---GTMPLNKVVQPAFKLARDGFIVNDALADD 191 (581)
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHcCccCCHHHHHH
Confidence 367889 48988877888888899999999886664
No 108
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=20.59 E-value=1.1e+02 Score=25.50 Aligned_cols=43 Identities=26% Similarity=0.519 Sum_probs=27.0
Q ss_pred ceeeecccccccccccchhHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhh
Q 046504 4 SVFCRVPLHFAMHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNE 61 (94)
Q Consensus 4 ~~~~~~~~~f~~~~~~Gd~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E 61 (94)
-+|||| =||||| ++||=..=+.. +.|+|=. |.=++|=+.++..
T Consensus 2 DIFC~V------IDNfGD----IGVcWRLArqL-a~e~g~~----VrLwvDdl~af~~ 44 (374)
T PF10093_consen 2 DIFCRV------IDNFGD----IGVCWRLARQL-AAEHGQQ----VRLWVDDLAAFAR 44 (374)
T ss_pred ceeEEe------ccCCcc----hHHHHHHHHHH-HHHhCCe----EEEEECCHHHHHH
Confidence 379999 499999 46775554443 4467654 4445555555544
No 109
>KOG2407 consensus GPI transamidase complex, GPI16/PIG-T component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=20.31 E-value=12 Score=33.39 Aligned_cols=31 Identities=45% Similarity=0.747 Sum_probs=25.7
Q ss_pred hhCCCCCchHHHHHHHHHH------Hhhhhhhhhhhc
Q 046504 60 NERGLPGGPQAARAAVKWA------QRHVDKDWKEWT 90 (94)
Q Consensus 60 ~E~glPGap~AARaai~WA------q~~vDkDWk~Wt 90 (94)
+-=|+||-++++.+|=.|| |..+|+.||+-+
T Consensus 94 e~WG~~p~~s~psGaElWa~f~~~~~~~vd~~WK~Lt 130 (575)
T KOG2407|consen 94 EGWGLPPFPSGPSGAELWAWFQADQQEDVDKSWKKLT 130 (575)
T ss_pred cccCCCCccCCCcceEEEEEecCcchhhHHHHHHHHH
Confidence 3357899999999999998 556999999865
No 110
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=20.24 E-value=1.7e+02 Score=21.97 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=31.6
Q ss_pred cccccccccccch--hHHHHHHhHHHHHHHhhhhcCC--CceeechhhhHHHHHHhhCC
Q 046504 9 VPLHFAMHKNYGH--VKLWSVICSLIFNTFLHSEYGG--PGTLLVLPFIDMADTLNERG 63 (94)
Q Consensus 9 ~~~~f~~~~~~Gd--~~~vV~vCteIF~~FLh~eYgG--pGTLlV~PF~DM~~~l~E~g 63 (94)
++|||.-.-+.++ .+.+..++ +.++ +|++ .-.|.+.||+++...+....
T Consensus 31 ~~l~f~~~~~~~~~~~~k~~~l~-~~l~-----~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 31 IALHFDSPPFTGEKAREKVEELA-EKLS-----EYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp EEEEEE-TTTSSCCCHHHHHHHH-HHHH-----CCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-HHHH-----HhCCCcceeEEEECcHHHHHHHHhcC
Confidence 4788876655565 44444333 3333 4655 77899999999999888766
No 111
>PF12025 Phage_C: Phage protein C; InterPro: IPR016407 This family of phage proteins is functionally uncharacterised. Proteins in this family are typically between 68 to 86 amino acids in length.; GO: 0019073 viral DNA genome packaging
Probab=20.13 E-value=62 Score=21.92 Aligned_cols=12 Identities=50% Similarity=0.772 Sum_probs=10.2
Q ss_pred hHHHHHHhhCCC
Q 046504 53 IDMADTLNERGL 64 (94)
Q Consensus 53 ~DM~~~l~E~gl 64 (94)
-.|++.|||||+
T Consensus 56 ~sllDiLkeRgl 67 (68)
T PF12025_consen 56 KSLLDILKERGL 67 (68)
T ss_pred HHHHHHHHHccC
Confidence 468999999986
No 112
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=20.13 E-value=80 Score=19.11 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=19.4
Q ss_pred ccccccccccc-ch-hHHHHHHhHHHHHHH
Q 046504 9 VPLHFAMHKNY-GH-VKLWSVICSLIFNTF 36 (94)
Q Consensus 9 ~~~~f~~~~~~-Gd-~~~vV~vCteIF~~F 36 (94)
+|.++.-.|++ +. ...|+....+||+.|
T Consensus 78 ~~~~~~~~dl~~~~~~~~vl~~l~~l~~~~ 107 (108)
T PF00307_consen 78 IPPLLSPEDLVEKGDEKSVLSFLWQLFRYF 107 (108)
T ss_dssp SSCTS-HHHHHSTT-HHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 55666666776 33 788888888888766
No 113
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.08 E-value=82 Score=23.21 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=15.2
Q ss_pred cCCCceeech------------hhh-HHHHHHhhCCC
Q 046504 41 YGGPGTLLVL------------PFI-DMADTLNERGL 64 (94)
Q Consensus 41 YgGpGTLlV~------------PF~-DM~~~l~E~gl 64 (94)
|-|||.++.+ ||+ +..+.|+++||
T Consensus 8 ~~~~~~~~~~~~~~~~l~~~~~~iv~~ci~~le~~gl 44 (203)
T cd04374 8 YHSPGRLQSEVEGEAQLDDIGFKFVRKCIEAVETRGI 44 (203)
T ss_pred ccCccccccccccccccccccHHHHHHHHHHHHHcCC
Confidence 6667777665 455 45666666665
No 114
>PF08612 Med20: TATA-binding related factor (TRF) of subunit 20 of Mediator complex; InterPro: IPR013921 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Proteins in this entry are subunit Med20 of the Mediator complex, and is found in the non-essential part of the head []. and related to the TATA-binding protein (TBP). TBP is a highly conserved RNA polymerase II general transcription factor that binds to the core promoter and initiates assembly of the pre-initiation complex. Human TRF has been shown to associate with an RNA polymerase II-SRB complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZS_C 3RJ1_M 2HZM_G.
Probab=20.04 E-value=99 Score=22.87 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=20.5
Q ss_pred hHHHHHHhHHHHHHHhhhhcCCCceeech
Q 046504 22 VKLWSVICSLIFNTFLHSEYGGPGTLLVL 50 (94)
Q Consensus 22 ~~~vV~vCteIF~~FLh~eYgGpGTLlV~ 50 (94)
....++.|.++++||+.+ +|.|+.-+..
T Consensus 169 p~~~~~~~~~li~efl~~-~~~~~~~~~~ 196 (225)
T PF08612_consen 169 PCVSFEQCWELIREFLQS-FGIPDAKESI 196 (225)
T ss_dssp SSTTHHHHHHHHHHHHHH-TTS-S-EEE-
T ss_pred ccccHHHHHHHHHHHHHH-hCCCCCcccc
Confidence 456788999999999999 8888665444
Done!