Query 046504
Match_columns 94
No_of_seqs 16 out of 18
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 22:36:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pd0_A Hypothetical protein; s 71.2 2.4 8.3E-05 32.7 2.6 39 43-81 177-218 (223)
2 4fbd_A Putative uncharacterize 66.5 3.2 0.00011 32.4 2.4 40 43-82 191-233 (243)
3 3gxq_A Putative regulator of t 63.3 6.2 0.00021 24.6 2.8 29 46-76 15-47 (54)
4 2is8_A Molybdopterin biosynthe 44.3 11 0.00039 25.1 1.9 22 62-83 126-147 (164)
5 2es4_D Lipase chaperone; prote 40.8 23 0.00079 27.4 3.4 51 32-86 88-138 (332)
6 3oak_C Transcription elongatio 40.1 12 0.00042 21.1 1.3 12 50-61 1-12 (31)
7 3vni_A Xylose isomerase domain 40.1 32 0.0011 23.1 3.6 52 30-83 227-289 (294)
8 2x7v_A Probable endonuclease 4 36.3 16 0.00056 24.3 1.7 32 51-82 239-279 (287)
9 1qtw_A Endonuclease IV; DNA re 36.3 23 0.0008 23.4 2.5 33 51-83 240-280 (285)
10 2pjk_A 178AA long hypothetical 36.1 13 0.00046 25.5 1.3 15 62-76 148-162 (178)
11 2bpt_A Importin beta-1 subunit 35.5 90 0.0031 23.6 5.7 57 24-84 797-857 (861)
12 3qc0_A Sugar isomerase; TIM ba 35.4 61 0.0021 21.2 4.4 14 68-81 261-274 (275)
13 2k5e_A Uncharacterized protein 33.8 43 0.0015 20.3 3.2 51 15-69 7-57 (73)
14 3iwt_A 178AA long hypothetical 33.7 15 0.0005 24.4 1.1 14 63-76 149-162 (178)
15 2pbq_A Molybdenum cofactor bio 33.6 16 0.00054 24.9 1.3 16 63-78 133-148 (178)
16 3pzy_A MOG; ssgcid, seattle st 32.8 20 0.0007 24.2 1.7 18 62-79 130-147 (164)
17 2bkm_A Truncated hemoglobin fr 32.8 84 0.0029 19.7 4.6 35 32-66 47-103 (128)
18 1mkz_A Molybdenum cofactor bio 32.5 17 0.00057 24.6 1.3 15 63-77 135-149 (172)
19 2g2c_A Putative molybdenum cof 32.2 23 0.00079 23.7 1.9 17 63-79 138-154 (167)
20 1bxb_A Xylose isomerase; xylos 31.4 72 0.0025 23.3 4.6 40 44-83 259-314 (387)
21 3c8f_A Pyruvate formate-lyase 31.2 27 0.00092 22.5 2.0 43 22-65 52-100 (245)
22 3rfq_A Pterin-4-alpha-carbinol 30.9 24 0.00083 24.8 1.9 16 63-78 155-170 (185)
23 1y5e_A Molybdenum cofactor bio 30.9 20 0.00068 24.0 1.4 15 62-76 138-152 (169)
24 1j0t_A MIH, MOLT-inhibiting ho 30.3 18 0.00063 23.3 1.1 23 13-35 12-34 (78)
25 3fvv_A Uncharacterized protein 30.2 63 0.0021 20.3 3.6 20 48-67 93-112 (232)
26 2vvp_A Ribose-5-phosphate isom 30.0 56 0.0019 23.2 3.7 31 29-61 120-150 (162)
27 3qxb_A Putative xylose isomera 29.5 55 0.0019 22.5 3.5 38 43-83 260-314 (316)
28 2qw5_A Xylose isomerase-like T 29.3 74 0.0025 22.1 4.2 49 31-84 265-331 (335)
29 1di6_A MOGA, molybdenum cofact 28.2 20 0.00068 25.2 1.1 16 62-77 130-145 (195)
30 1iiz_A Lysozyme; hydrolase; 2. 28.2 61 0.0021 21.9 3.5 28 54-81 7-34 (120)
31 2kpa_A ARNO(375-400); hydrolas 28.1 10 0.00035 20.6 -0.3 13 49-61 3-15 (26)
32 2g0w_A LMO2234 protein; putati 27.9 61 0.0021 22.2 3.5 21 68-88 272-292 (296)
33 1jlj_A Gephyrin; globular alph 27.2 31 0.0011 23.9 1.9 19 63-81 143-161 (189)
34 1uuy_A CNX1, molybdopterin bio 26.5 18 0.00062 24.1 0.6 17 62-78 135-151 (167)
35 3rxz_A Polysaccharide deacetyl 25.7 94 0.0032 21.9 4.3 51 21-81 215-265 (300)
36 2vvr_A Ribose-5-phosphate isom 25.0 68 0.0023 22.5 3.4 31 29-62 117-147 (149)
37 3lmz_A Putative sugar isomeras 24.4 1.3E+02 0.0045 19.8 4.6 16 68-83 240-255 (257)
38 1u5t_B Defective in vacuolar p 24.2 28 0.00095 24.3 1.2 29 14-43 8-37 (169)
39 3cuq_B Vacuolar protein-sortin 22.9 1.3E+02 0.0045 21.5 4.7 53 13-75 68-123 (218)
40 3isq_A 4-hydroxyphenylpyruvate 22.2 63 0.0022 24.9 3.0 33 33-66 245-281 (393)
41 2eqx_A Kelch repeat and BTB do 21.4 40 0.0014 20.7 1.4 48 30-83 37-84 (105)
42 1eye_A DHPS 1, dihydropteroate 21.3 1.3E+02 0.0044 22.4 4.4 69 9-77 15-99 (280)
43 1r9l_A Glycine betaine-binding 21.2 2.3E+02 0.0078 20.1 5.8 62 22-91 241-302 (309)
44 2g3q_A Protein YBL047C; endocy 21.1 1.1E+02 0.0036 16.3 3.3 32 51-84 3-34 (43)
45 3i3n_A Kelch-like protein 11; 20.5 1.7E+02 0.0058 20.1 4.7 38 45-82 178-217 (279)
46 2zds_A Putative DNA-binding pr 20.3 1.2E+02 0.0041 20.6 3.8 34 51-84 275-320 (340)
47 3bci_A Disulfide bond protein 20.1 1.6E+02 0.0054 18.6 4.2 40 27-75 24-69 (186)
No 1
>2pd0_A Hypothetical protein; structural genomics, structural genomics consortium, SGC, UN function; HET: MES; 2.30A {Cryptosporidium parvum}
Probab=71.16 E-value=2.4 Score=32.68 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=32.2
Q ss_pred CCceeechhhhHHHHHHhh---CCCCCchHHHHHHHHHHHhh
Q 046504 43 GPGTLLVLPFIDMADTLNE---RGLPGGPQAARAAVKWAQRH 81 (94)
Q Consensus 43 GpGTLlV~PF~DM~~~l~E---~glPGap~AARaai~WAq~~ 81 (94)
.|.+++|.|.|=|+.+|+| -|.|..-.+=++|+..=++|
T Consensus 177 e~~E~PM~PITmmRNAL~eEGGSGVpLDRekY~~SV~yW~~h 218 (223)
T 2pd0_A 177 ESFEVPMEPITILRNTLIEEGGSGVPLKREKYLESVEFWKEH 218 (223)
T ss_dssp CSSCCCCCHHHHHHTTCGGGCCCCCCCCHHHHHHHHHHHTTE
T ss_pred CCCCCCCccHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhc
Confidence 4678999999999999988 56777778888888865555
No 2
>4fbd_A Putative uncharacterized protein; conserved hypothetical, structural genomics, niaid, national institute of allergy and infectious diseases; 2.35A {Toxoplasma gondii}
Probab=66.49 E-value=3.2 Score=32.36 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=32.8
Q ss_pred CCceeechhhhHHHHHHhh---CCCCCchHHHHHHHHHHHhhh
Q 046504 43 GPGTLLVLPFIDMADTLNE---RGLPGGPQAARAAVKWAQRHV 82 (94)
Q Consensus 43 GpGTLlV~PF~DM~~~l~E---~glPGap~AARaai~WAq~~v 82 (94)
.|.+|+|.|.|=|+.+|+| .|.|..-.+=++|+..=++|+
T Consensus 191 e~~E~PM~PITmMRNAL~eEGGSGVpLDRekY~~SV~yW~~ha 233 (243)
T 4fbd_A 191 EKYSLPMAPITMLRNTLIEEGGSGVALDREAYKASVAYWKTHA 233 (243)
T ss_dssp SSSCCCCCHHHHHHTTCGGGSSCCCCCCHHHHHHHHHHHTSEE
T ss_pred CCCCCCCccHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCc
Confidence 4678999999999999988 567777788899988655553
No 3
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=63.27 E-value=6.2 Score=24.64 Aligned_cols=29 Identities=41% Similarity=0.588 Sum_probs=23.4
Q ss_pred eeechhhhHHHHHH----hhCCCCCchHHHHHHHH
Q 046504 46 TLLVLPFIDMADTL----NERGLPGGPQAARAAVK 76 (94)
Q Consensus 46 TLlV~PF~DM~~~l----~E~glPGap~AARaai~ 76 (94)
.|||.| ||.+++ .|+.+-.-+||.|.-++
T Consensus 15 hllvdp--dmkdeiikyaqekdfdnvsqagreilk 47 (54)
T 3gxq_A 15 HLLVDP--DMKDEIIKYAQEKDFDNVSQAGREILK 47 (54)
T ss_dssp EEEECH--HHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred EEeeCC--chhHHHHHHHHHccchhHHHHHHHHHH
Confidence 578888 888876 46888888999998775
No 4
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=44.33 E-value=11 Score=25.13 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=17.2
Q ss_pred CCCCCchHHHHHHHHHHHhhhh
Q 046504 62 RGLPGGPQAARAAVKWAQRHVD 83 (94)
Q Consensus 62 ~glPGap~AARaai~WAq~~vD 83 (94)
-+|||.|.+++.++.+..-.+.
T Consensus 126 ~~LPG~P~~~~~~~~~v~p~l~ 147 (164)
T 2is8_A 126 LNLPGSPKGARESLEAVLPVLP 147 (164)
T ss_dssp EEECSSHHHHHHHHHHHGGGHH
T ss_pred EECCCCHHHHHHHHHHHHHHHH
Confidence 3799999999999877654443
No 5
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=40.76 E-value=23 Score=27.40 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=38.4
Q ss_pred HHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhhhhh
Q 046504 32 IFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDW 86 (94)
Q Consensus 32 IF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vDkDW 86 (94)
.|.-||-. + |+.-.+=..+.....-.+.|||.|.++.+.-+|.++-.++.|
T Consensus 88 ~FDYfLs~-~---gE~~~~~i~~~v~~~i~~~lpg~~a~~~al~L~~rYl~Yk~A 138 (332)
T 2es4_D 88 FFDYCLTA-Q---GELTPAALDALVRREIAAQLDGSPAQAEALGVWRRYRAYFDA 138 (332)
T ss_dssp HHHHHHTT-G---GGSCHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-c---CCCCHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 46666654 4 566555566666666678899999999999999999888776
No 6
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=40.15 E-value=12 Score=21.14 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=10.5
Q ss_pred hhhhHHHHHHhh
Q 046504 50 LPFIDMADTLNE 61 (94)
Q Consensus 50 ~PF~DM~~~l~E 61 (94)
.||+-|.++|.+
T Consensus 1 ~~~~~~~~aled 12 (31)
T 3oak_C 1 DPFTHMSDKIDE 12 (31)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcchhHHHHHHH
Confidence 499999999987
No 7
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=40.07 E-value=32 Score=23.09 Aligned_cols=52 Identities=23% Similarity=0.471 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhcCCCceeechhhhHHHHHHhh-----CCCCCc-h-----HHHHHHHHHHHhhhh
Q 046504 30 SLIFNTFLHSEYGGPGTLLVLPFIDMADTLNE-----RGLPGG-P-----QAARAAVKWAQRHVD 83 (94)
Q Consensus 30 teIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E-----~glPGa-p-----~AARaai~WAq~~vD 83 (94)
.+|+...-...| .|.+.+|+|......+.+ |.+... - ..||.+|...|+.+.
T Consensus 227 ~~~~~~L~~~gy--~g~~~lE~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~l~~~~~ 289 (294)
T 3vni_A 227 VEIGEALADIGY--NGSVVMEPFVRMGGTVGSNIKVWRDISNGADEKMLDREAQAALDFSRYVLE 289 (294)
T ss_dssp HHHHHHHHHTTC--CSCEEECCCCCCCHHHHHHHTCCSCTTCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC--CCcEEEEeccCCCccccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHh
Confidence 445655555555 677888888765444432 344443 4 789999998887653
No 8
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=36.30 E-value=16 Score=24.26 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=22.2
Q ss_pred hhhHHHHHHhhCCCCC---------chHHHHHHHHHHHhhh
Q 046504 51 PFIDMADTLNERGLPG---------GPQAARAAVKWAQRHV 82 (94)
Q Consensus 51 PF~DM~~~l~E~glPG---------ap~AARaai~WAq~~v 82 (94)
+|-.++.+|++.|..| .|.+++.++.|.+...
T Consensus 239 d~~~~~~~L~~~gy~g~~~~lE~~~~~~~~~~s~~~l~~~~ 279 (287)
T 2x7v_A 239 GEEGFAVFFSFKEIQEVPWILETPGGNEEHAEDIKKVFEII 279 (287)
T ss_dssp HHHHHHHHHTCHHHHTSCEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccCCCCCcEEEecCCCCcchHHHHHHHHHHH
Confidence 5666667777644333 3788999999988754
No 9
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=36.30 E-value=23 Score=23.45 Aligned_cols=33 Identities=9% Similarity=0.228 Sum_probs=22.3
Q ss_pred hhhHHHHHHhhCCCCC--------chHHHHHHHHHHHhhhh
Q 046504 51 PFIDMADTLNERGLPG--------GPQAARAAVKWAQRHVD 83 (94)
Q Consensus 51 PF~DM~~~l~E~glPG--------ap~AARaai~WAq~~vD 83 (94)
+|-.++..|++.|..| .|.+.+.++.|.+....
T Consensus 240 d~~~~~~~L~~~gy~g~~~~lE~~~~~~~~~s~~~lr~~~~ 280 (285)
T 1qtw_A 240 GHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLKAQQT 280 (285)
T ss_dssp CSHHHHHHHTCGGGTTSEEEECCSCGGGHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhccCcCCCCEEEecCCCcchHHHHHHHHHHHh
Confidence 4555566666655544 26788999999887643
No 10
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=36.09 E-value=13 Score=25.47 Aligned_cols=15 Identities=47% Similarity=0.718 Sum_probs=13.1
Q ss_pred CCCCCchHHHHHHHH
Q 046504 62 RGLPGGPQAARAAVK 76 (94)
Q Consensus 62 ~glPGap~AARaai~ 76 (94)
-+|||.|.||+.++.
T Consensus 148 ~~LPG~P~aa~~~~~ 162 (178)
T 2pjk_A 148 YLLPGSPDAVKLALK 162 (178)
T ss_dssp EEECSCHHHHHHHHH
T ss_pred EECCCCcHHHHHHHH
Confidence 389999999998876
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=35.45 E-value=90 Score=23.55 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=32.8
Q ss_pred HHHHHhHHHHHHHhhhhcCCCceeechhhhH---HHHHHhh-CCCCCchHHHHHHHHHHHhhhhh
Q 046504 24 LWSVICSLIFNTFLHSEYGGPGTLLVLPFID---MADTLNE-RGLPGGPQAARAAVKWAQRHVDK 84 (94)
Q Consensus 24 ~vV~vCteIF~~FLh~eYgGpGTLlV~PF~D---M~~~l~E-~glPGap~AARaai~WAq~~vDk 84 (94)
.+...+.+.++.++.. |||+- +.||.. +..-|+. ++.+-..+..+.+..||+..+.+
T Consensus 797 ~vr~~a~~~l~~l~~~-~~g~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 797 ATSRAAVGLIGDIAAM-FPDGS---IKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHHHHH-CTTST---TGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCch---HHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 3445556677777665 85553 445554 2222333 22233345678889999988754
No 12
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=35.41 E-value=61 Score=21.20 Aligned_cols=14 Identities=7% Similarity=0.053 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHhh
Q 046504 68 PQAARAAVKWAQRH 81 (94)
Q Consensus 68 p~AARaai~WAq~~ 81 (94)
.+++|.|+.|.++.
T Consensus 261 ~~~~~~~~~~l~~~ 274 (275)
T 3qc0_A 261 DEVIATCVERYRNC 274 (275)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC
Confidence 46888888888764
No 13
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=33.76 E-value=43 Score=20.28 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchH
Q 046504 15 MHKNYGHVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQ 69 (94)
Q Consensus 15 ~~~~~Gd~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~ 69 (94)
.+...||+.+----..+||..|=...+|=||. .+.-..++.+++||.....
T Consensus 7 ~d~tI~eiv~~~P~~~~vf~~~G~~c~~C~~a----~~~tL~~Aa~~~gid~~~l 57 (73)
T 2k5e_A 7 KDMTFAQALQTHPGVAGVLRSYNLGCIGCMGA----QNESLEQGANAHGLNVEDI 57 (73)
T ss_dssp SSSBHHHHHHHCTHHHHHHHHTTGGGGGTTTG----GGSBHHHHHHHTTCCHHHH
T ss_pred CCCCHHHHHHHCHHHHHHHHHcCCCCCCCCcc----ccccHHHHHHHcCCCHHHH
Confidence 34445554444444578888887776888876 6777788899999986543
No 14
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=33.66 E-value=15 Score=24.43 Aligned_cols=14 Identities=50% Similarity=0.812 Sum_probs=12.2
Q ss_pred CCCCchHHHHHHHH
Q 046504 63 GLPGGPQAARAAVK 76 (94)
Q Consensus 63 glPGap~AARaai~ 76 (94)
+|||.|.+++.++.
T Consensus 149 ~LPG~P~~~~~~~~ 162 (178)
T 3iwt_A 149 LLPGSPDAVKLALK 162 (178)
T ss_dssp EECSCHHHHHHHHH
T ss_pred ECCCCHHHHHHHHH
Confidence 69999999998764
No 15
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=33.60 E-value=16 Score=24.91 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=14.2
Q ss_pred CCCCchHHHHHHHHHH
Q 046504 63 GLPGGPQAARAAVKWA 78 (94)
Q Consensus 63 glPGap~AARaai~WA 78 (94)
+|||.|.+++.++.+-
T Consensus 133 ~LPG~P~~~~~~~~~~ 148 (178)
T 2pbq_A 133 NLPGKPQSIKVCLDAV 148 (178)
T ss_dssp EECSSHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHH
Confidence 7999999999998774
No 16
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=32.78 E-value=20 Score=24.24 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=14.4
Q ss_pred CCCCCchHHHHHHHHHHH
Q 046504 62 RGLPGGPQAARAAVKWAQ 79 (94)
Q Consensus 62 ~glPGap~AARaai~WAq 79 (94)
-+|||.|.||+.++....
T Consensus 130 ~~LPG~P~aa~~~~~~v~ 147 (164)
T 3pzy_A 130 VNLPGSPGGVRDGLGVLA 147 (164)
T ss_dssp EEECSSHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHH
Confidence 489999999998876443
No 17
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=32.78 E-value=84 Score=19.68 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=23.5
Q ss_pred HHHHHhhhhcCCCceee---chhh-------------------hHHHHHHhhCCCCC
Q 046504 32 IFNTFLHSEYGGPGTLL---VLPF-------------------IDMADTLNERGLPG 66 (94)
Q Consensus 32 IF~~FLh~eYgGpGTLl---V~PF-------------------~DM~~~l~E~glPG 66 (94)
-+..||..--|||.+.- -+|. -.|..+|+|.|+|+
T Consensus 47 ~l~~Fl~~~~GGp~~Y~~~~G~p~l~~~H~~~~I~~~~fd~wl~~~~~al~e~~~~~ 103 (128)
T 2bkm_A 47 KQKQFLTQYLGGPPLYTAEHGHPMLRARHLRFEITPKRAEAWLACMRAAMDEIGLSG 103 (128)
T ss_dssp HHHHHHHHHTTSCCHHHHHHCCCCHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCCCccccccCCccHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCH
Confidence 45567777778887651 1121 25888999999885
No 18
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=32.50 E-value=17 Score=24.63 Aligned_cols=15 Identities=33% Similarity=0.559 Sum_probs=13.4
Q ss_pred CCCCchHHHHHHHHH
Q 046504 63 GLPGGPQAARAAVKW 77 (94)
Q Consensus 63 glPGap~AARaai~W 77 (94)
+|||.|.+++.++.+
T Consensus 135 ~LPG~P~~~~~~~~~ 149 (172)
T 1mkz_A 135 AMPGSTKACRTAWEN 149 (172)
T ss_dssp EECSSHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHH
Confidence 799999999998775
No 19
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=32.19 E-value=23 Score=23.66 Aligned_cols=17 Identities=6% Similarity=0.014 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHHHH
Q 046504 63 GLPGGPQAARAAVKWAQ 79 (94)
Q Consensus 63 glPGap~AARaai~WAq 79 (94)
+|||.|.+++..+....
T Consensus 138 ~LPG~P~~~~~~~~~v~ 154 (167)
T 2g2c_A 138 NAPSSSGGITDTWAVIS 154 (167)
T ss_dssp EECSSHHHHHHHHHHHG
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 79999999999876443
No 20
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=31.39 E-value=72 Score=23.34 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=26.0
Q ss_pred CceeechhhhHHHHHHhhCCCCCc----------------hHHHHHHHHHHHhhhh
Q 046504 44 PGTLLVLPFIDMADTLNERGLPGG----------------PQAARAAVKWAQRHVD 83 (94)
Q Consensus 44 pGTLlV~PF~DM~~~l~E~glPGa----------------p~AARaai~WAq~~vD 83 (94)
||+.-..++..|+.+|++.|.-|. -.+++.++.+.+....
T Consensus 259 ~G~~d~~~~~~i~~~L~~~Gy~G~i~~E~~~~~~dp~~~~~~~~~~~~~~l~~~l~ 314 (387)
T 1bxb_A 259 FGSENLKAAFFLVDLLESSGYQGPRHFDAHALRTEDEEGVWAFARGCMRTYLILKE 314 (387)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCCSCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEeeecccCCchhHHHHHHHHHHHHHHHHHH
Confidence 666666677777777777665332 2677777777665443
No 21
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=31.15 E-value=27 Score=22.52 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=25.2
Q ss_pred hHHHHHHhHHHHHHH----hhhhcCCCceeechh-h-hHHHHHHhhCCCC
Q 046504 22 VKLWSVICSLIFNTF----LHSEYGGPGTLLVLP-F-IDMADTLNERGLP 65 (94)
Q Consensus 22 ~~~vV~vCteIF~~F----Lh~eYgGpGTLlV~P-F-~DM~~~l~E~glP 65 (94)
++++++...+....+ -.=-+.| |+-++.| | .+++..++++|++
T Consensus 52 ~~~i~~~i~~~~~~~~~~~~~i~~~G-GEP~l~~~~l~~l~~~~~~~~~~ 100 (245)
T 3c8f_A 52 VEDLMKEVVTYRHFMNASGGGVTASG-GEAILQAEFVRDWFRACKKEGIH 100 (245)
T ss_dssp HHHHHHHHGGGHHHHTSTTCEEEEEE-SCGGGGHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhhhhhcCCCCeEEEEC-CCcCCCHHHHHHHHHHHHHcCCc
Confidence 566666554432221 0112455 7666666 3 6889999998875
No 22
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=30.93 E-value=24 Score=24.80 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHHH
Q 046504 63 GLPGGPQAARAAVKWA 78 (94)
Q Consensus 63 glPGap~AARaai~WA 78 (94)
+|||.|.||+.++...
T Consensus 155 ~LPGnP~aa~~~~~~l 170 (185)
T 3rfq_A 155 NLAGSRYAVRDGMATL 170 (185)
T ss_dssp EECSSHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHH
Confidence 7999999999987653
No 23
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=30.89 E-value=20 Score=24.04 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=13.1
Q ss_pred CCCCCchHHHHHHHH
Q 046504 62 RGLPGGPQAARAAVK 76 (94)
Q Consensus 62 ~glPGap~AARaai~ 76 (94)
-+|||.|.+++..+.
T Consensus 138 ~~LPG~P~~~~~~~~ 152 (169)
T 1y5e_A 138 FSMPGSSGAVRLAMN 152 (169)
T ss_dssp EEECSSHHHHHHHHH
T ss_pred EECCCCHHHHHHHHH
Confidence 379999999999876
No 24
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=30.32 E-value=18 Score=23.34 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=18.9
Q ss_pred cccccccchhHHHHHHhHHHHHH
Q 046504 13 FAMHKNYGHVKLWSVICSLIFNT 35 (94)
Q Consensus 13 f~~~~~~Gd~~~vV~vCteIF~~ 35 (94)
+-+.++|..+++|-+-|..+|++
T Consensus 12 ygdr~lf~kldrVCdDCyNLyR~ 34 (78)
T 1j0t_A 12 MGNRDIYKKVVRVCEDCTNIFRL 34 (78)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHHhcC
Confidence 44667788899999999999974
No 25
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=30.21 E-value=63 Score=20.29 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=15.2
Q ss_pred echhhhHHHHHHhhCCCCCc
Q 046504 48 LVLPFIDMADTLNERGLPGG 67 (94)
Q Consensus 48 lV~PF~DM~~~l~E~glPGa 67 (94)
+..-..+++..|+++|+|-+
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~ 112 (232)
T 3fvv_A 93 LTVQAVDVVRGHLAAGDLCA 112 (232)
T ss_dssp CCHHHHHHHHHHHHTTCEEE
T ss_pred cCHHHHHHHHHHHHCCCEEE
Confidence 45557788889999998843
No 26
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=30.03 E-value=56 Score=23.24 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=22.2
Q ss_pred hHHHHHHHhhhhcCCCceeechhhhHHHHHHhh
Q 046504 29 CSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNE 61 (94)
Q Consensus 29 CteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E 61 (94)
--+|+.+||..+|.|-+ -=..=+||...+++
T Consensus 120 A~~iv~~fL~t~F~gg~--rh~~Rv~ki~~~e~ 150 (162)
T 2vvp_A 120 ALAIVDAFVTTPWSKAQ--RHQRRIDILAEYER 150 (162)
T ss_dssp HHHHHHHHHHSCCCCCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCh--hHHHHHHHHHHHHh
Confidence 34899999999996531 23455788888876
No 27
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=29.52 E-value=55 Score=22.54 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=24.6
Q ss_pred CCceeechhhhHHHHHHhhCCCCCch-----------------HHHHHHHHHHHhhhh
Q 046504 43 GPGTLLVLPFIDMADTLNERGLPGGP-----------------QAARAAVKWAQRHVD 83 (94)
Q Consensus 43 GpGTLlV~PF~DM~~~l~E~glPGap-----------------~AARaai~WAq~~vD 83 (94)
|-|++ +|-.++.+|++.|..|.| .+++.|+.+.++++.
T Consensus 260 G~G~i---d~~~i~~~L~~~gy~g~~v~lE~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 314 (316)
T 3qxb_A 260 QPGVV---TPQRLQDFWDKYALTDQTFFAEILYPFEARDEDVLADMIASVKALKAASP 314 (316)
T ss_dssp SCSSC---CHHHHHHHHHHTTCSSCCEEECCCCCTTSCHHHHHHHHHHHHHHHHTCCC
T ss_pred CCceE---CHHHHHHHHHHcCCCCceEEEEecCccccCcHHHHHHHHHHHHHHHhcCC
Confidence 44544 677777788887665531 467777777776543
No 28
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=29.34 E-value=74 Score=22.09 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=30.0
Q ss_pred HHHHHHhhhhcCCCceeechhhhHHHHHHhhCCC------------------CCchHHHHHHHHHHHhhhhh
Q 046504 31 LIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGL------------------PGGPQAARAAVKWAQRHVDK 84 (94)
Q Consensus 31 eIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~gl------------------PGap~AARaai~WAq~~vDk 84 (94)
+||+.... .| .|.+.||.|.+... ..+.+ +-.-+.||.|+.+-+..+.+
T Consensus 265 ~i~~~L~~-gy--~G~~~~E~~~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~ 331 (335)
T 2qw5_A 265 SFLTPIVK-VY--DGPIAVEIFNAIPA--FTNSLRLTRRKFWIPDEDPPNQYPNAYDIADEAIKVTRKELKK 331 (335)
T ss_dssp HHHHHHHH-HC--CSCEEECCCCSCHH--HHTTTTCCSCCCBCBTTBCCCSSCBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-cC--CccEEEEecCCCch--HHHHhhhcchhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 35555544 56 55777777765322 12222 45567899999998876543
No 29
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=28.19 E-value=20 Score=25.22 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=12.9
Q ss_pred CCCCCchHHHHHHHHH
Q 046504 62 RGLPGGPQAARAAVKW 77 (94)
Q Consensus 62 ~glPGap~AARaai~W 77 (94)
-+|||.|.+++.++..
T Consensus 130 ~~LPG~P~a~~~~~~~ 145 (195)
T 1di6_A 130 LNLPGQPKSIKETLEG 145 (195)
T ss_dssp EEECSSHHHHHHHHHE
T ss_pred EECCCCHHHHHHHHHH
Confidence 3799999999987643
No 30
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB: 1gd6_A
Probab=28.18 E-value=61 Score=21.94 Aligned_cols=28 Identities=7% Similarity=0.129 Sum_probs=23.5
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHHhh
Q 046504 54 DMADTLNERGLPGGPQAARAAVKWAQRH 81 (94)
Q Consensus 54 DM~~~l~E~glPGap~AARaai~WAq~~ 81 (94)
+.+++|++.|+||..++--..|.+.+..
T Consensus 7 eLar~L~~~g~~~~~l~~WvCia~~ES~ 34 (120)
T 1iiz_A 7 GLVNELRKQGFDENLMRDWVCLVENESA 34 (120)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCccchhheeeeeehhhC
Confidence 5788999999999999988888877643
No 31
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=28.12 E-value=10 Score=20.57 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=9.5
Q ss_pred chhhhHHHHHHhh
Q 046504 49 VLPFIDMADTLNE 61 (94)
Q Consensus 49 V~PF~DM~~~l~E 61 (94)
..||.||+.+=|.
T Consensus 3 ~dPFYdml~~RKk 15 (26)
T 2kpa_A 3 VDPFYEMLAARKK 15 (26)
T ss_dssp SHHHHHHHTCTHH
T ss_pred cchHHHHHHHHHH
Confidence 4799999865443
No 32
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=27.92 E-value=61 Score=22.18 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhh
Q 046504 68 PQAARAAVKWAQRHVDKDWKE 88 (94)
Q Consensus 68 p~AARaai~WAq~~vDkDWk~ 88 (94)
.++++.++.+.+..+.+-|.+
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~ 292 (296)
T 2g0w_A 272 EYAALKVYNATKKVLDEAWPE 292 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 568899999999998887765
No 33
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=27.24 E-value=31 Score=23.92 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=14.5
Q ss_pred CCCCchHHHHHHHHHHHhh
Q 046504 63 GLPGGPQAARAAVKWAQRH 81 (94)
Q Consensus 63 glPGap~AARaai~WAq~~ 81 (94)
+|||.|.++...+.+..-.
T Consensus 143 ~LPG~P~s~~~~~~~v~P~ 161 (189)
T 1jlj_A 143 NLPGSKKGSQECFQFILPA 161 (189)
T ss_dssp EECSSHHHHHHHHHHHGGG
T ss_pred ECCCCHHHHHHHHHHHHHH
Confidence 4999999998877655433
No 34
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=26.46 E-value=18 Score=24.11 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=13.8
Q ss_pred CCCCCchHHHHHHHHHH
Q 046504 62 RGLPGGPQAARAAVKWA 78 (94)
Q Consensus 62 ~glPGap~AARaai~WA 78 (94)
-+|||.|.+++.++.+-
T Consensus 135 ~~LPG~P~s~~~~~~~~ 151 (167)
T 1uuy_A 135 INMPGNPNAVAECMEAL 151 (167)
T ss_dssp EEECSSTTHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHH
Confidence 38999999999986543
No 35
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}
Probab=25.71 E-value=94 Score=21.94 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=32.5
Q ss_pred hhHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhh
Q 046504 21 HVKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRH 81 (94)
Q Consensus 21 d~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~ 81 (94)
..+++.+.....|.. +..+ |+|=+|.++|.+- |-|+--.+-+..|.+++.+
T Consensus 215 ~~~~~~~~~~~~fd~-~~~~-g~~~~i~~H~~~~--------g~p~~~~~l~~~l~~~~~~ 265 (300)
T 3rxz_A 215 TPAKAIELWRAELNA-MRDI-GGAWVLTNHPFLS--------GRPGRAAALREFIAEVCAM 265 (300)
T ss_dssp CHHHHHHHHHHHHHH-HHHH-TCEEEEEECHHHH--------TSHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHH-HHHc-CCeEEEEEChhhc--------CCHHHHHHHHHHHHHHHhC
Confidence 367777777777743 4444 8999999998542 3333344555666666655
No 36
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=24.99 E-value=68 Score=22.45 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=23.1
Q ss_pred hHHHHHHHhhhhcCCCceeechhhhHHHHHHhhC
Q 046504 29 CSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNER 62 (94)
Q Consensus 29 CteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~ 62 (94)
--+|+.+||..+|.|. -=.+=+||...++++
T Consensus 117 a~~iv~~fL~t~f~gg---rh~~Rv~ki~~~e~~ 147 (149)
T 2vvr_A 117 AKMIVDAWLGAQYEGG---RHQQRVEAITAIEQR 147 (149)
T ss_dssp HHHHHHHHHHCCCCCT---THHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCc---cHHHHHHHHHHHHhc
Confidence 3479999999999643 455667888777664
No 37
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=24.43 E-value=1.3e+02 Score=19.85 Aligned_cols=16 Identities=6% Similarity=0.027 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHhhhh
Q 046504 68 PQAARAAVKWAQRHVD 83 (94)
Q Consensus 68 p~AARaai~WAq~~vD 83 (94)
..++|.++.|.++.+.
T Consensus 240 ~~~~~~s~~~l~~~l~ 255 (257)
T 3lmz_A 240 FLGIAESIGYFKAVSD 255 (257)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4789999999887654
No 38
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=24.16 E-value=28 Score=24.35 Aligned_cols=29 Identities=7% Similarity=-0.133 Sum_probs=17.2
Q ss_pred ccccccch-hHHHHHHhHHHHHHHhhhhcCC
Q 046504 14 AMHKNYGH-VKLWSVICSLIFNTFLHSEYGG 43 (94)
Q Consensus 14 ~~~~~~Gd-~~~vV~vCteIF~~FLh~eYgG 43 (94)
+..++|=+ -.+|+++|..-|+.=+ .+.||
T Consensus 8 ~~~~f~~ELa~qi~e~c~~~~~~~~-~~~GG 37 (169)
T 1u5t_B 8 NKELFLDEIAREIYEFTLSEFKDLN-SDTNY 37 (169)
T ss_dssp SSTTHHHHHHHHHHHHHHTTTTTSS-SCCCC
T ss_pred ChhHHHHHHHHHHHHHHhhcchhhH-HhcCc
Confidence 44556666 7789999974443112 33566
No 39
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=22.94 E-value=1.3e+02 Score=21.53 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=34.3
Q ss_pred cccccccch-hHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhh-CCCC-CchHHHHHHH
Q 046504 13 FAMHKNYGH-VKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNE-RGLP-GGPQAARAAV 75 (94)
Q Consensus 13 f~~~~~~Gd-~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E-~glP-Gap~AARaai 75 (94)
.+..++|=+ -.+|+++|..- .++.|| +.+..|....++. ||.. -+|.=-+.|+
T Consensus 68 ~s~~~f~~ELa~qi~e~c~~~-----~~~~GG-----~I~L~dl~~~~nraRG~~lVSp~Dl~~A~ 123 (218)
T 3cuq_B 68 GSGTQYHMQLAKQLAGILQVP-----LEERGG-----IMSLTEVYCLVNRARGMELLSPEDLVNAC 123 (218)
T ss_dssp SCSCHHHHHHHHHHHHHHHHH-----HHHTTS-----EEEHHHHHHHHHHTCSSSCCCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHH-----HHhCCC-----eEEHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 455666667 78899999864 244777 5778888888877 6642 1344443333
No 40
>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A*
Probab=22.22 E-value=63 Score=24.89 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=26.0
Q ss_pred HHHHhhhhcCCCc----eeechhhhHHHHHHhhCCCCC
Q 046504 33 FNTFLHSEYGGPG----TLLVLPFIDMADTLNERGLPG 66 (94)
Q Consensus 33 F~~FLh~eYgGpG----TLlV~PF~DM~~~l~E~glPG 66 (94)
-.+||.+ |+||| -|-|.=.......|+++|++-
T Consensus 245 I~~fL~~-~~G~Gi~HiA~~~dDi~~~~~~l~~~Gv~~ 281 (393)
T 3isq_A 245 IQEYVDY-NGGAGVQHIALKTEDIITAIRHLRERGLEF 281 (393)
T ss_dssp HHHHHHH-HTSSEEEEEEEEESCHHHHHHHHHHTTCCB
T ss_pred HHHHHHH-cCCCCcceEEEEcCCHHHHHHHHHHcCCcc
Confidence 3689987 89999 355677778889999999853
No 41
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.38 E-value=40 Score=20.71 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=32.3
Q ss_pred HHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhh
Q 046504 30 SLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVD 83 (94)
Q Consensus 30 teIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vD 83 (94)
.+=|.+...+ ...+-.|.-.+...|... .+.--.+-+|++.|.+....
T Consensus 37 ~~nF~~v~~~-----~eFl~L~~~~L~~lL~sd-v~~E~~vf~av~~Wv~~d~~ 84 (105)
T 2eqx_A 37 KTHLAQLQNT-----EEFLHLPHRLLTDIISDG-VPCSQNPTEAIEAWINFNKE 84 (105)
T ss_dssp HHTCHHHHTS-----HHHHHSCHHHHHHHHHTC-EETTSCHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhc-----ccHhhCCHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCHH
Confidence 4445555543 345667777777777764 55556789999999876544
No 42
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=21.31 E-value=1.3e+02 Score=22.36 Aligned_cols=69 Identities=22% Similarity=0.180 Sum_probs=38.3
Q ss_pred cccccccccccchhHHHHHHhHHHHHHHhh-hhcCC----Cceeechhh------hHHHHHHhhCCCCCc-----hHHHH
Q 046504 9 VPLHFAMHKNYGHVKLWSVICSLIFNTFLH-SEYGG----PGTLLVLPF------IDMADTLNERGLPGG-----PQAAR 72 (94)
Q Consensus 9 ~~~~f~~~~~~Gd~~~vV~vCteIF~~FLh-~eYgG----pGTLlV~PF------~DM~~~l~E~glPGa-----p~AAR 72 (94)
-|=.||+.-.|-+.++++...-+...+=.+ =+-|| ||.-.|.+= +....+|.+.++|-+ |.+|+
T Consensus 15 TpDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piSIDT~~~~va~ 94 (280)
T 1eye_A 15 TDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDTMRADVAR 94 (280)
T ss_dssp SCCTTCSSCCCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEEEECSCHHHHH
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEEeCCCHHHHH
Confidence 477899987777777777665443322111 03455 664444433 333345555589987 99999
Q ss_pred HHHHH
Q 046504 73 AAVKW 77 (94)
Q Consensus 73 aai~W 77 (94)
+||+-
T Consensus 95 aAl~a 99 (280)
T 1eye_A 95 AALQN 99 (280)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 99973
No 43
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=21.21 E-value=2.3e+02 Score=20.14 Aligned_cols=62 Identities=11% Similarity=0.229 Sum_probs=40.7
Q ss_pred hHHHHHHhHHHHHHHhhhhcCCCceeechhhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhhhhhhhhcC
Q 046504 22 VKLWSVICSLIFNTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTG 91 (94)
Q Consensus 22 ~~~vV~vCteIF~~FLh~eYgGpGTLlV~PF~DM~~~l~E~glPGap~AARaai~WAq~~vDkDWk~Wt~ 91 (94)
..++.+-+.++ .+||.+ + +|-.+=..+|...+.+.+.++ ..++++|-.|.++|-+. |+.|..
T Consensus 241 ~~~~~~~~P~~-~~~L~~-~----~lt~~~~~~l~~~v~~~~~~~-~~~~~vA~~wl~~~~~~-~~~Wl~ 302 (309)
T 1r9l_A 241 NKAWAEKNPAA-AKLFAI-M----QLPVADINAQNAIMHDGKASE-GDIQGHVDGWIKAHQQQ-FDGWVN 302 (309)
T ss_dssp EHHHHHHCHHH-HHHHHH-C----CCCHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHHTHHH-HHHHHH
T ss_pred chhHHHHChHH-HHHHHh-C----CCCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHCHHH-HHHHHH
Confidence 35677778877 778877 4 244444445555555555433 24668888999999874 888864
No 44
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.12 E-value=1.1e+02 Score=16.30 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=22.4
Q ss_pred hhhHHHHHHhhCCCCCchHHHHHHHHHHHhhhhh
Q 046504 51 PFIDMADTLNERGLPGGPQAARAAVKWAQRHVDK 84 (94)
Q Consensus 51 PF~DM~~~l~E~glPGap~AARaai~WAq~~vDk 84 (94)
|--+....|.+-|+|- ..|+.|+.=..+++++
T Consensus 3 p~e~~i~~L~~MGF~~--~~a~~AL~~~~~n~e~ 34 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTE--EEAHNALEKCNWDLEA 34 (43)
T ss_dssp HHHHHHHHHHTTTSCH--HHHHHHHHHHTSCHHH
T ss_pred CCHHHHHHHHHcCCCH--HHHHHHHHHhCcCHHH
Confidence 4446778899999984 6677777766555553
No 45
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=20.51 E-value=1.7e+02 Score=20.07 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=28.9
Q ss_pred ceeechhhhHHHHHHhhCCCCCc--hHHHHHHHHHHHhhh
Q 046504 45 GTLLVLPFIDMADTLNERGLPGG--PQAARAAVKWAQRHV 82 (94)
Q Consensus 45 GTLlV~PF~DM~~~l~E~glPGa--p~AARaai~WAq~~v 82 (94)
..++-.|.-.+...|+...|.-. -+.-+|++.|.+.+.
T Consensus 178 ~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~ 217 (279)
T 3i3n_A 178 EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNA 217 (279)
T ss_dssp SGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTH
T ss_pred cChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCH
Confidence 35666788888888888777554 578899999998653
No 46
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=20.29 E-value=1.2e+02 Score=20.58 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=21.4
Q ss_pred hhhHHHHHHhhCCCCC-----------c-hHHHHHHHHHHHhhhhh
Q 046504 51 PFIDMADTLNERGLPG-----------G-PQAARAAVKWAQRHVDK 84 (94)
Q Consensus 51 PF~DM~~~l~E~glPG-----------a-p~AARaai~WAq~~vDk 84 (94)
+|-.++.+|++.|..| . .++++.++.|.++...+
T Consensus 275 d~~~i~~~L~~~gy~g~~~lE~~~~~~~~~~~~~~s~~~l~~~~~~ 320 (340)
T 2zds_A 275 PWEDVFRMLRSIDYQGPVSVEWEDAGMDRLQGAPEALTRLKAFDFE 320 (340)
T ss_dssp CHHHHHHHHHHTTCCSCEEECCCCTTSCHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHhcCCCccEEEEeeCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4555555666555432 2 36889999998876543
No 47
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=20.11 E-value=1.6e+02 Score=18.56 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=21.9
Q ss_pred HHhHHHHHHH---hhhhcCCCc--eeechhhhHHHHHHhhCCC-CCchHHHHHHH
Q 046504 27 VICSLIFNTF---LHSEYGGPG--TLLVLPFIDMADTLNERGL-PGGPQAARAAV 75 (94)
Q Consensus 27 ~vCteIF~~F---Lh~eYgGpG--TLlV~PF~DM~~~l~E~gl-PGap~AARaai 75 (94)
-.|.+...+. |.++|+-.| ++...||-= + |.+-.|||+++
T Consensus 24 p~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~---------~~~~s~~aa~a~~ 69 (186)
T 3bci_A 24 PYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAF---------LGKDSIVGSRASH 69 (186)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTSSEEEEEECCC---------SCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccCCeEEEEEEecCc---------CCcchHHHHHHHH
Confidence 3576665543 557897545 444555420 1 44556666655
Done!