BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046506
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 168/309 (54%), Gaps = 26/309 (8%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +K AI + ++ + +L + D AGLIP F+ AT+GTT +
Sbjct: 197 RAGLIGGVKLK---AIPS--DGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N HKW DC
Sbjct: 252 DNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + +P YLK+ +S + DY+ WQI L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L+ ++R HV ++ FE LV D RFE+ +VCFR+ S
Sbjct: 372 KGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGS--------------- 416
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
N+ N LL+ IN++ K ++ L + +RFA + E HV AW ++E
Sbjct: 417 ------NKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKEL 470
Query: 301 LEALLSASK 309
+L A +
Sbjct: 471 AADVLRAER 479
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 167/309 (54%), Gaps = 26/309 (8%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +K AI + ++ + +L + D AGLIP F+ AT+GTT +
Sbjct: 197 RAGLIGGVKLK---AIPS--DGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N H W DC
Sbjct: 252 DNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHXWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + +P YLK+ +S + DY+ WQI L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L+ ++R HV ++ FE LV D RFE+ +VCFR+ S
Sbjct: 372 KGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGS--------------- 416
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
N+ N LL+ IN++ K ++ L + +RFA + E HV AW ++E
Sbjct: 417 ------NKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKEL 470
Query: 301 LEALLSASK 309
+L A +
Sbjct: 471 AADVLRAER 479
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 162/298 (54%), Gaps = 26/298 (8%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +K AI + + + +L + D AGLIP F+ AT+GTT+ +
Sbjct: 197 RAGLIGGVKLK---AIPS--DGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N HKW DC
Sbjct: 252 DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + +P YLK+ S + DY+ WQ+ L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L+ ++R HV ++ FE V D RFEV +VCFR+ S
Sbjct: 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS--------------- 416
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQ 298
+ N LLE IN++ K ++ L G + +RFA + E HV +AW ++
Sbjct: 417 ------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIR 468
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 154/282 (54%), Gaps = 23/282 (8%)
Query: 16 IKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGI 75
+++ +S ++ + +L I DV GLIP + T+GTT A D L V + +
Sbjct: 206 LRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNL 265
Query: 76 WVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSL 135
W+HVDAAYAGSA ICPE+RH + G+E ADSF+ N H W DC +W+KDPS +VN+
Sbjct: 266 WIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAF 325
Query: 136 STNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAK 195
+ +P YLK+ S DY+ WQI L RRFR+LKLWFVLR YGV NL+ +R H N AK
Sbjct: 326 NVDPLYLKHDMQGSAP--DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAK 383
Query: 196 LFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLE 255
F L +D RFE+ + +VCFR+ S NE N LL+
Sbjct: 384 QFGDLCVADSRFELAAEINMGLVCFRLKGS---------------------NERNEALLK 422
Query: 256 SINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVV 297
IN G ++ A + +Y +R A + T+ + +W V
Sbjct: 423 RINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEV 464
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 210 bits (535), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 157/284 (55%), Gaps = 23/284 (8%)
Query: 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAA 82
++ L ++L I D + GL+P+F+CAT+GTT + A D L L + + G+W+H+DAA
Sbjct: 220 NFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAA 279
Query: 83 YAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYL 142
YAG+A +CPEFR F+ G+E ADSF+ N KW DC WVKD L + S NP YL
Sbjct: 280 YAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYL 339
Query: 143 KNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFERLVG 202
++ S D+ WQI LSRRFRS+KLWFV+R++GV NL+ +R MAK FE LV
Sbjct: 340 RH--ANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVR 397
Query: 203 SDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGK 262
+D FE+ RH +V FR+ K NSL +L+ I +G+
Sbjct: 398 NDPSFEIPAKRHLGLVVFRL-----------KGPNSL----------TENVLKEIAKAGR 436
Query: 263 AYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLEALLS 306
++ A + IRF + T ++ W ++++ +LS
Sbjct: 437 LFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLILS 480
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 127/286 (44%), Gaps = 12/286 (4%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K A +G+ + R +K + + P+ L +I G +P + AT GTT + A
Sbjct: 218 KGAAFLGLGTDSVRVVKADERGK--MVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAF 275
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L+ + DV ++ G+W+HVDAA+ GS + RH +DG++ ADS + N HK L C
Sbjct: 276 DPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQC 335
Query: 121 CCLWVKDPSDLVNSL-STNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG 179
L ++D S+L+ + YL + +D D + RR LKLW + + G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395
Query: 180 VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239
L + +A+ + + FE+V F VCF P + L+ K E+
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPS----LRGKQESP- 450
Query: 240 LSEEERINEFNRELLESINASGK---AYMTHAVLGGIYAIRFAAGA 282
ER+++ L E + G Y H G + + A A
Sbjct: 451 -DYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSA 495
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 101/230 (43%), Gaps = 6/230 (2%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA +G N IK + + P AKI + G +P ++ AT GTT A
Sbjct: 207 KAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF 264
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D ++ + D+ +++ +W+HVDAA+ G + + RH ++G+E A+S + N H L C
Sbjct: 265 DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQC 324
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+ VK+ L + YL + D D I R K W + + G
Sbjct: 325 SAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT 384
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVF---PRHFAVVCFRVSPSAV 227
+ + + +A+ + + + FE+VF P H VCF P ++
Sbjct: 385 VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH-TNVCFWYIPQSL 433
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 15/254 (5%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K A +GI + IK + + P L +I + G +P + AT GTT A
Sbjct: 200 KGAAALGIGTDSVILIKCDERGK--MIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAF 257
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + D+ K++ IW+HVDAA+ G + + + + GVE A+S + N H L C
Sbjct: 258 DPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQC 317
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
L V++ + N + YL + D D + R KLW + R G
Sbjct: 318 SALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGT 377
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVF---PRHFAVVCFRVSPSAVMDKLKTKYEN 237
+ + +A+ ++ + + +E+VF P+H V + + PS L+T +N
Sbjct: 378 TGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTNVCFWYIPPS-----LRTLEDN 432
Query: 238 SLLSEEERINEFNR 251
EER++ ++
Sbjct: 433 -----EERMSRLSK 441
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 6/230 (2%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA +G N IK + + P AKI + G +P ++ AT GTT A
Sbjct: 204 KAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF 261
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D ++ + D+ +++ +W+HVDAA+ G + + RH ++G+E A+S + N H L C
Sbjct: 262 DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQC 321
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+ VK+ L YL + D D I R K W + + G
Sbjct: 322 SAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT 381
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVF---PRHFAVVCFRVSPSAV 227
+ + + +A+ + + + FE+VF P H VCF P ++
Sbjct: 382 VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH-TNVCFWYIPQSL 430
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 122/270 (45%), Gaps = 31/270 (11%)
Query: 14 RAIKTTKSSSYGLSPDSLMAKINSDVEA-GLIPLFLCATIGTTAITAVDTLKPLCDVAKQ 72
+A+ T +++ G + + ++ + +A GLIP + T GTT A+D L + D A +
Sbjct: 227 KAVXTVDANADGTXDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADXAVK 286
Query: 73 FGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLV 132
W HVD AY G A I + + GVE A S S++ HK F+ T+ C L V D S+
Sbjct: 287 HDXWXHVDGAYGG-ALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF- 344
Query: 133 NSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANL----RHFLR 188
L + +YL + E +VD I ++RF +LK++ +N G L H L
Sbjct: 345 KFLLHHADYLNREHDELPNLVDK---SIATTKRFDALKVFXTXQNVGPKALGDXYDHLLA 401
Query: 189 SHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINE 248
+ +A + ++ +FE++ + V FR + E ++E
Sbjct: 402 QTLEVAD----XIRTNDQFELLAEPSLSTVLFRAT-----------------HETADLDE 440
Query: 249 FNRELLESINASGKAYMTHAVLGGIYAIRF 278
N+ L G A + ++ G A++F
Sbjct: 441 LNKALRLEALTRGIAVLGETIVDGKTALKF 470
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 53 GTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE-------GADS 105
GTT + +D ++ L +AK+ I++HVDAA+ G + ++ GV G DS
Sbjct: 180 GTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDS 239
Query: 106 FSLNAHKWFFTTLDCCCLWVKD 127
+++ HK + + KD
Sbjct: 240 ITIDPHKXGHCPIPSGGILFKD 261
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 57 ITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACIC 90
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 182
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 57 ITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACIC 90
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 157 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 190
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 57 ITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACIC 90
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 182
>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
pdb|4EU1|B Chain B, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
Length = 409
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 22 SSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81
++ GL+ ++ ++ E +I + CA T D + +CDV K+ VD
Sbjct: 164 ATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDM 223
Query: 82 AYAGSACICPEF-----RHFIDGVEG---ADSFSLN 109
AY G A ++ RH +D V A SFS N
Sbjct: 224 AYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSXN 259
>pdb|3EBB|A Chain A, PlapP97 COMPLEX
pdb|3EBB|B Chain B, PlapP97 COMPLEX
pdb|3EBB|C Chain C, PlapP97 COMPLEX
pdb|3EBB|D Chain D, PlapP97 COMPLEX
Length = 304
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 202 GSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESI 257
+ K + FP+ AV + +P+ ++ KLK N EE+++ E + LLE I
Sbjct: 35 AASKTXNIYFPKKEAVTFDQANPTQILGKLKEL--NGTAPEEKKLTEDDLILLEKI 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,528,426
Number of Sequences: 62578
Number of extensions: 328551
Number of successful extensions: 831
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 16
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)