RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 046506
(310 letters)
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 400 bits (1029), Expect = e-138
Identities = 174/309 (56%), Positives = 222/309 (71%), Gaps = 14/309 (4%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA QI GI +N R +KT S++Y L+P+ L I++D+ +GLIP FLCAT+GTT+ TAV
Sbjct: 196 KACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAV 255
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L +AK G+W HVDAAYAGSACICPE+RH+IDGVE ADSF++NAHKWF T DC
Sbjct: 256 DPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDC 315
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
LWVKD + L+ SLSTNPE+LKNKA+++ VVDYKDWQI L RRFRSLKLW VLR YGV
Sbjct: 316 SLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGV 375
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
NL+ ++R+H+ +AK FE+LV D RFEVV PR F++VCFR+ P
Sbjct: 376 ENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPK-------------- 421
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+ E+ N+ N +LL+++N+SGK +++H VL G Y +RFA GA LTEERHV AW V+Q+
Sbjct: 422 NNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDE 481
Query: 301 LEALLSASK 309
LL S
Sbjct: 482 ASKLLGKSS 490
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 352 bits (904), Expect = e-119
Identities = 161/300 (53%), Positives = 215/300 (71%), Gaps = 14/300 (4%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA I GI +N R +KT S++YG+ P+SL I+ D+ G IP F+CAT+GTT+ AV
Sbjct: 244 KACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV 303
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L PL ++AK++GIW+HVDAAYAG+ACICPE+R FIDG+E ADSF++NAHKW F C
Sbjct: 304 DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTC 363
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
LWVKD L+++L TNPEYL+ K ++ VV+YKDWQI+LSRRFRSLKLW VLR YG
Sbjct: 364 SPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGS 423
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
NLR+F+R HVN+AK FE V D FEVV R+F++VCFR++P +
Sbjct: 424 ENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAP--------------VD 469
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+E++ NE NRELL ++N++GK +++H L G + +RFA GA LTEE+HV AW ++Q+H
Sbjct: 470 GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKH 529
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 290 bits (744), Expect = 6e-97
Identities = 115/221 (52%), Positives = 142/221 (64%), Gaps = 5/221 (2%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA I G++ R I T ++ + L I D E GLIP F+CAT+GTT A
Sbjct: 156 KAALIAGVE---LREIPTDEN--GKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAF 210
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L+ L D+ ++ +W+HVDAAYAGSA ICPEFRH++ G+E ADSFS N HKW LDC
Sbjct: 211 DPLQELGDICNKYDLWLHVDAAYAGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDC 270
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
LWV+D L +L NPEYL + +S VDY DWQI LSRRFR LKLWFVLR+YGV
Sbjct: 271 SALWVRDKGALQQALQFNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGV 330
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFR 221
L++ +R HV +AK FE LV D RFE+ R +VCFR
Sbjct: 331 EGLQNQIRRHVELAKYFEALVRKDSRFEICAERGLGLVCFR 371
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 215 bits (549), Expect = 6e-68
Identities = 79/300 (26%), Positives = 126/300 (42%), Gaps = 64/300 (21%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA + + V R + + + P++L A I+ D GL P+ + AT GTT A+
Sbjct: 110 KAAAYLDVKV---RLVPVDEDGR--MDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAI 164
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L+ + D+A+++ +W+HVDAAY G PE RH G+E DS S++ HK+ L C
Sbjct: 165 DPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGC 224
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+ V R+LKLW LR +G
Sbjct: 225 SAVLV-----------------------------------------RALKLWATLRRFGR 243
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
+ V++AK L+ +D FE++ + ++VCFR+ PS +D+L
Sbjct: 244 DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDEL--------- 294
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
N +L + +N G ++ LGG +RF LT ++
Sbjct: 295 ---------NYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIERA 345
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 140 bits (356), Expect = 2e-38
Identities = 67/305 (21%), Positives = 128/305 (41%), Gaps = 27/305 (8%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA+ +G+ ++ + T Y + D+L I+ + G++ T GTT ++
Sbjct: 172 KAARYLGLGLRRVPTVPTD----YRIDVDALEEAIDENTIGGVV----VGTAGTTDTGSI 223
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRH-FIDGVEGADSFSLNAHKWFFTTLD 119
D ++ L D+A+++GIW+HVDAA+ G E + G+EG DS +++ HK+ +
Sbjct: 224 DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIG 283
Query: 120 CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG 179
C + +D L L YL + ++ R ++L L+ LR G
Sbjct: 284 CGVVLFRDEEALRRILIFADYYL-----PGGGIPNFTILGSRPGR--QALALYANLRRLG 336
Query: 180 VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239
R L + +A+ + FE+V +V FR+ E++L
Sbjct: 337 REGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDD----------EDTL 386
Query: 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299
ER++ ++ + G A + + G ++F L +R + +++E
Sbjct: 387 ADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDREESL-LALIEE 445
Query: 300 HLEAL 304
+
Sbjct: 446 PGREI 450
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 84.7 bits (210), Expect = 3e-18
Identities = 70/269 (26%), Positives = 124/269 (46%), Gaps = 14/269 (5%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA ++GI N AIKT ++ + D+L K E + PL + GTT +
Sbjct: 224 KAADVLGIGRDNLIAIKTDANNR--IDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNI 281
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + D+A++ G HVDAA+ G+ + +RH + G+E ADS +++AHK + +
Sbjct: 282 DPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGA 341
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDW-QITL--SRRFRSLKLWFVLRN 177
+ KDP+ L++++ + EY+ K + KD TL SR ++ ++ L
Sbjct: 342 GMVLFKDPA-LMSAIEHHAEYILRKGS--------KDLGSHTLEGSRPGMAMLVYAGLHI 392
Query: 178 YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYEN 237
G + + AK F L+ FE+V ++ +R P V L E
Sbjct: 393 IGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEE 452
Query: 238 SLLSEEERINEFNRELLESINASGKAYMT 266
E ++ + + + +GK++++
Sbjct: 453 QREKINELLDRLTKFIQKRQREAGKSFVS 481
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 56.6 bits (137), Expect = 5e-09
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA+++G+++ Y + + I D G++ GTT + +
Sbjct: 121 KAAEMLGLEL-----RYAPLDEDYTVDVKDVEDLI-DDNTIGIV-----GIAGTTELGQI 169
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGS----ACICPEFRHFIDGVEGADSFSLNAHKWFFT 116
D ++ L +A + GI++HVDAA+ G F + G S +++ HK +
Sbjct: 170 DDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLS 229
Query: 117 TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ 151
+ + + S L LS + YL T KQ
Sbjct: 230 PIPAGGILFRSKSYL-KYLSVDAPYL----TVKKQ 259
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 51.2 bits (123), Expect = 5e-08
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 38 DVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFI 97
+++A + T TT+ + LK + +AK++GI + VDAA AG A P
Sbjct: 86 ELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVL--- 142
Query: 98 DGVEGADSFSLNAHKWF 114
GAD + + HK
Sbjct: 143 IPEGGADVVTFSLHKNL 159
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 52.4 bits (126), Expect = 9e-08
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 33/183 (18%)
Query: 29 DSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGI---WVHVDAAYAG 85
D L++KI + P + A IGTT A+D +K + ++ K+ GI ++H DAA +G
Sbjct: 148 DDLISKIKENKNQ---PPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSG 204
Query: 86 SACICPEFRHFIDGV------EGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNP 139
I P F++ +G DS +++ HK+ + + C + K V +S +
Sbjct: 205 M--ILP----FVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAK--KKYVERISVDV 256
Query: 140 EYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFVLRNYGVANLRHFLRSHVNMAK-LF 197
+Y + +D I+ SR +L LW +R+ G LR ++ ++MA+
Sbjct: 257 DY-----------IGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAV 305
Query: 198 ERL 200
+RL
Sbjct: 306 DRL 308
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 49.1 bits (118), Expect = 1e-06
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA ++G+++ R Y + ++ I+ + G++ GTT + V
Sbjct: 119 KAADMLGVEL---RRAPLDDD--YRVDVKAVEDLIDDNT-IGIV-----GIAGTTELGQV 167
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFID---GVEGADSFSLNAHKWFFTT 117
D + L +A + GI++HVDAA+ G + P + + G DS +++ HK
Sbjct: 168 DPIPELSKIALENGIFLHVDAAFGG--FVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAP 225
Query: 118 LDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQV 152
+ + +D S L ++L+ + YL T KQ
Sbjct: 226 IPAGGILFRDESYL-DALAVDTPYL----TSKKQA 255
>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
Length = 374
Score = 43.7 bits (103), Expect = 7e-05
Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 37/208 (17%)
Query: 28 PDSLMAKIN-SDVEAGLI-----PLFLCATIGTTAITAVDTLKPLCDVAKQFGI-----W 76
P +I+ D+E L P L IGTT AVD L + + K+ G +
Sbjct: 139 PTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFY 198
Query: 77 VHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLS 136
+H D A G + + S S++ HK+ + C + V +LS
Sbjct: 199 IHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTR--KKHVKALS 256
Query: 137 TNPEYLKNKATESKQVVDYKDWQITLSRRFRS-LKLWFVLRNYGVANLR----------H 185
N EYL + +D I SR + L LW+ LR G ++ H
Sbjct: 257 QNVEYLNS-----------RDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAH 305
Query: 186 FLRSHVNMAKLFERLVGSDKRFEVVFPR 213
+L+ + A L RL ++ VVF R
Sbjct: 306 YLKDRLTEAGLTCRL--NELSSTVVFER 331
>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus
type. This model represents tyrosine decarboxylases in
the family of the Enterococcus faecalis enzyme Tdc.
These enzymes often are encoded next to
tyrosine/tyramine antiporter, together comprising a
system in which tyrosine decarboxylation can protect
against exposure to acid conditions. This clade differs
from the archaeal tyrosine decarboxylases associated
with methanofuran biosynthesis [Cellular processes,
Adaptations to atypical conditions].
Length = 608
Score = 37.9 bits (88), Expect = 0.006
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTT---AI 57
KAA I+GI + + I S+Y + + L I L + +G+T A+
Sbjct: 237 KAADIIGIGLD--QVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAV 294
Query: 58 TAVDTLKPLCDVAKQFGIW--VHVDAAYAGSA 87
+D + L + + GI+ +HVDAAY G
Sbjct: 295 DGIDKIVALRNKLMKEGIYFYLHVDAAYGGYG 326
>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase [Unknown function, Enzymes of unknown
specificity].
Length = 397
Score = 34.3 bits (79), Expect = 0.069
Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 20/130 (15%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+AA+ G VK R ++ L PD L + ++ L T + V
Sbjct: 123 QAAERAGAKVKWARV----DEATGELHPDDLASLLSPRTR-----LVAVTAASNTLGSIV 173
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE-GADSFSLNAHKWFFTTLD 119
D L + ++ G V VDA + ID GAD + +A+K+F +
Sbjct: 174 D-LAAITELVHAAGALVVVDAVHYAP-------HGLIDVQATGADFLTCSAYKFFGPHMG 225
Query: 120 CCCLWVKDPS 129
LW +
Sbjct: 226 --ILWGRPEL 233
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 33.1 bits (76), Expect = 0.16
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-ID-GVEGADSFSLNAHKWFFTTLDC 120
+K + ++A + G V VDAA A H ID G D + + HKW
Sbjct: 181 VKEIAELAHEHGALVLVDAAQA--------AGHLPIDVQELGCDFLAFSGHKWLLGPTGI 232
Query: 121 CCLWVKD 127
L+V+
Sbjct: 233 GVLYVRK 239
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 33.1 bits (76), Expect = 0.17
Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 25/110 (22%)
Query: 49 CATIGTTAITAVDTLKPLCDVAKQFG------IWVHVDAAYAGSACICP--------EFR 94
+GTT + +K L D ++ I +HVDAA G I P +FR
Sbjct: 191 VCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGG--FIAPFVYPDLEWDFR 248
Query: 95 HFIDGVEGADSFSLNAHKWFFTTLDCCCLWV--KDPSDLVNSLSTNPEYL 142
S +++ HK+ WV +D L L + YL
Sbjct: 249 L-----PRVKSINVSGHKYGLVYPGVG--WVIWRDEEALPEELIFHVNYL 291
>gnl|CDD|221822 pfam12872, OST-HTH, OST-HTH/LOTUS domain. A predicted RNA-binding
domain found in insect Oskar and vertebrate TDRD5/TDRD7
proteins that nucleate or organize structurally related
ribonucleoprotein (RNP) complexes, the polar granule and
nuage, is poorly understood. The domain adopts the
winged helix-turn- helix fold and bind RNA with a
potential specificity for dsRNA.In eukaryotes this
domain is often combined in the same polypeptide with
protein-protein- or lipid- interaction domains that
might play a role in anchoring these proteins to
specific cytoskeletal structures. Thus, proteins with
this domain might have a key role in the recognition and
localization of dsRNA, including miRNAs, rasiRNAs and
piRNAs hybridized to their targets. In other cases, this
domain is fused to ubiquitin-binding, E3 ligase and
ubiquitin-like domains indicating a previously
under-appreciated role for ubiquitination in regulating
the assembly and stability of nuage-like RNP complexes.
Both bacteria and eukaryotes encode a conserved family
of proteins that combines this predicted RNA-binding
domain with a previously uncharacterized RNAse domain
belonging to the superfamily that includes the 5'->3'
nucleases, PIN and NYN domains.
Length = 74
Score = 29.5 bits (67), Expect = 0.34
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 154 DYKDWQITLSR---RFRSLKLWFVLRNYGVANLRHFLRSHVNMAKLFE 198
D W +LS +R L F RNYG + L L + + LFE
Sbjct: 19 DEDGW-ASLSELGSEYRKLFPDFDPRNYGYSKLSDLLEA---IPDLFE 62
>gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in
bacterial Alpha-amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes Firmicutes, Proteobacteria, Actinobacteria,
and Cyanobacteria. The Alpha-amylase family comprises
the largest family of glycoside hydrolases (GH), with
the majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains:
A, B, C. A is a (beta/alpha) 8-barrel; B is a loop
between the beta 3 strand and alpha 3 helix of A; C is
the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of
catalytic residues (Asp, Glu and Asp) performs
catalysis. Other members of this family have lost the
catalytic activity as in the case of the human 4F2hc,
or only have 2 residues that serve as the catalytic
nucleophile and the acid/base, such as Thermus A4
beta-galactosidase with 2 Glu residues (GH42) and human
alpha-galactosidase with 2 Asp residues (GH31). The
family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 352
Score = 31.9 bits (73), Expect = 0.35
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 61 DTLKPLCDVAKQFGIWVHVDA 81
D K LC A ++GI + VD
Sbjct: 68 DDFKALCAAAHKYGIKIIVDV 88
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 31.0 bits (71), Expect = 0.70
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYA-GSACICPEFRHFIDGVEGADSFSLNAHKW 113
+ + ++ K+ GI HVDA A G I E G D S +AHK+
Sbjct: 160 IAEIGEICKERGILFHVDAVQAVGKIPIDLE-------ELGVDLLSFSAHKF 204
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 30.8 bits (70), Expect = 0.88
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD 61
++ G +V + S+ + L D+L A + E + L T + ++
Sbjct: 106 IFRLAGGEVVRYP---LYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLE 162
Query: 62 TLKPLCDVAKQFGIWVHVDAAYAG 85
L+ L D+AK+ I + VD AYAG
Sbjct: 163 ELEKLLDLAKEHNILLLVDEAYAG 186
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 30.4 bits (69), Expect = 1.0
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 18/93 (19%)
Query: 26 LSPDSLMAKINSD-----VEAGLIPLFLCATIGTTAIT--AVDTLKPLCDVAKQFGIWVH 78
L+P+ L A I L+ T T +D LK + +AK+ G+ +H
Sbjct: 108 LTPEDLEAAIRPRDDIHFPPPSLV----SLENTTEGGTVYPLDELKAISALAKENGLPLH 163
Query: 79 VDAAYAGSACI---CPEFRHFIDGVEGADSFSL 108
+D A +A + G DS S
Sbjct: 164 LDGARLANAAAALGVALKTY----KSGVDSVSF 192
>gnl|CDD|115288 pfam06618, DUF1148, Protein of unknown function (DUF1148). This
family consists of several Maize streak virus proteins
of unknown function.
Length = 114
Score = 28.9 bits (64), Expect = 1.5
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 96 FIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQ 151
F+ V+ AD S +KW L C +++D ++SLST L+ A S Q
Sbjct: 58 FLLDVDMADCLSRAWNKWPGIALTWWCWYIRDRVAPIHSLSTKYHLLRGSALASLQ 113
>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily.
The DRE-TIM metallolyase superfamily includes
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 265
Score = 29.7 bits (68), Expect = 1.6
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 45 PLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE--- 101
+ + ++ + + AK+ G+ V A PE+ ++ +
Sbjct: 99 ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEY--VLEVAKALE 156
Query: 102 --GADSFSL 108
GAD SL
Sbjct: 157 EAGADEISL 165
>gnl|CDD|132896 cd07056, BMC_PduK, 1,2-propanediol utilization protein K (PduK),
Bacterial Micro-Compartment (BMC) domain repeat 1l.
PduK proteins are homologs of the carboxysome shell
protein. They are encoded within the pdu operon and
might be required for the formation of the outer shell
of the bacterial pdu polyhedral organelles which are
involved in coenzyme B12-dependent degradation of
1,2-propanediol. Although it has been suggested that
PduK might form hexamers and further assemble into the
flat facets of the polyhedral outer shell of pdu
organelles at present no experimental evidence directly
supports this view.
Length = 77
Score = 27.8 bits (62), Expect = 2.0
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 250 NRELLESINASGKAYMTHAVLGGIYAIRFA--AGATLTEERHVMVAWTVV 297
N LL N G +MT + G + A+ A AG VA TV+
Sbjct: 25 NVRLLGLENTKGSGWMTVKISGDVAAVNAAIEAGKQTAGASDGYVASTVI 74
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 29.5 bits (67), Expect = 2.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYA 84
L L D+AK++G + VD A++
Sbjct: 151 LPELVDLAKKYGAILFVDEAHS 172
>gnl|CDD|193205 pfam12729, 4HB_MCP_1, Four helix bundle sensory module for signal
transduction. This family is a four helix bundle that
operates as a ubiquitous sensory module in prokaryotic
signal-transduction. The 4HB_MCP is always found between
two predicted transmembrane helices indicating that it
detects only extracellular signals. In many cases the
domain is associated with a cytoplasmic HAMP domain
suggesting that most proteins carrying the bundle might
share the mechanism of transmembrane signalling which is
well-characterized in E coli chemoreceptors.
Length = 181
Score = 28.7 bits (65), Expect = 2.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 228 MDKLKTKYENSLLSEEER--INEFNRELLESINASGKA 263
+DKL KYE ++L+EEE+ NEF +L K
Sbjct: 91 IDKLLKKYEKTILTEEEKKLFNEFKEQLKAYRKVRNKV 128
>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases. This
group is predominated by atypical alcohol
dehydrogenases; they exist as tetramers and exhibit
specificity for NADP(H) as a cofactor in the
interconversion of alcohols and aldehydes, or ketones.
Like other zinc-dependent alcohol dehydrogenases (ADH)
of the medium chain alcohol dehydrogenase/reductase
family (MDR), tetrameric ADHs have a catalytic zinc that
resides between the catalytic and NAD(H)binding domains;
however, they do not have and a structural zinc in a
lobe of the catalytic domain. The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 351
Score = 29.1 bits (66), Expect = 3.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 42 GLIPLFLCATIGT-----TAITAVDTLKPLCDVAKQFGIWVHVD 80
G+ P+ L A G I AV + ++AK++G VD
Sbjct: 174 GIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVD 217
>gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P
(pyridoxal-binding), N-terminal domain [Amino acid
transport and metabolism].
Length = 450
Score = 28.7 bits (65), Expect = 3.6
Identities = 27/124 (21%), Positives = 36/124 (29%), Gaps = 45/124 (36%)
Query: 187 LRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERI 246
R H A L L E+VF F RV P V + L
Sbjct: 362 ERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRV-PEEVAEAL--------------- 405
Query: 247 NEFNRELLESINASGKAYMTHAVLGGIYAIRF---AAGATLTEERHVMVAWTVVQEHLEA 303
+ A+ GGI R LTE T +E ++A
Sbjct: 406 ------------------LAAAIAGGINLRRVDADTVLIALTE--------TTTKEDIDA 439
Query: 304 LLSA 307
L++A
Sbjct: 440 LVAA 443
>gnl|CDD|106740 PRK13799, PRK13799, unknown domain/N-carbamoyl-L-amino acid
hydrolase fusion protein; Provisional.
Length = 591
Score = 28.8 bits (64), Expect = 4.4
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 211 FPRHFAVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASG---KAYMTH 267
P HF V+ F ++ +++ + L I +FN ELL+ +A G + + H
Sbjct: 292 LPFHFEVIAFA-------EEEGQRFKATFLGSGALIGDFNMELLDIKDADGISLREAIQH 344
Query: 268 A 268
A
Sbjct: 345 A 345
>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 867
Score = 28.9 bits (65), Expect = 4.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 267 HAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHL 301
H++LG A RF L +VAW +V+ HL
Sbjct: 503 HSILGAEDARRFCERHGLNSRETELVAW-LVENHL 536
>gnl|CDD|220352 pfam09703, Cas_Csa4, CRISPR-associated protein (Cas_Csa4). CRISPR
loci appear to be mobile elements with a wide host
range. This entry represents a protein that tends to be
found near CRISPR repeats. The species range for this
species, so far, is exclusively archaeal. It is found so
far in only four different species, and includes two
tandem genes in Pyrococcus furiosus DSM 3638. CRISPR is
a term for Clustered, Regularly Interspaced Short
Palindromic Repeats. A number of protein families appear
only in association with these repeats and are
designated Cas (CRISPR-Associated) proteins.
Length = 361
Score = 28.3 bits (63), Expect = 5.8
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 18/104 (17%)
Query: 216 AVVCFRVSPSAVMDKLKTKYENSLLSEEERINEFNRELLESINASGKAYMTHAVLGG--- 272
VV RV P+ ++T+ +N L+++E I R LE + H G
Sbjct: 29 GVVEGRVEPTGERYVIETEVDNRTLADQESIEYGLRLALEEM---------HYAFLGREP 79
Query: 273 ------IYAIRFAAGATLTEERHVMVAWTVVQEHLEALLSASKP 310
F+AGA++ + V W + L L SK
Sbjct: 80 TENGRLRSDKDFSAGASILNPEGLRVYWDGLPAELNKLTEDSKK 123
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 28.0 bits (63), Expect = 6.6
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 26 LSPDSLMAKINSD----VEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81
L+P+ + A I D L L AT G T +D L+ + V K+ G+ +H+D
Sbjct: 112 LTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYP-LDELEAISAVCKEHGLPLHMDG 170
Query: 82 AYAGSACI 89
A +A +
Sbjct: 171 ARLANALV 178
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 28.0 bits (63), Expect = 7.3
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 19 TKSSSYGLSPDSLMAKINSDVEAGLI-----PLFLCATIGTTAITAVDTLKPLCDVAKQF 73
+ + + + L A I +A ++ P T A+ + + LK + ++A++
Sbjct: 144 EEENGFKPDLEDLEAAITPKTKAIILNSPNNP--------TGAVYSKEELKAIVELAREH 195
Query: 74 GIWVHVDAAYAG 85
I + D Y
Sbjct: 196 DIIIISDEIYEE 207
>gnl|CDD|221769 pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase.
Members of this family belong to the PD-(D/E)XK nuclease
superfamily. These proteins are transposase proteins.
Length = 229
Score = 27.5 bits (62), Expect = 7.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 227 VMDKLKTKYENSLLSEEERINEFNRE 252
++ K E +SEEER RE
Sbjct: 191 IIKKAFEALEKFSMSEEEREAYEERE 216
>gnl|CDD|225843 COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis
[Cell envelope biogenesis, outer membrane].
Length = 255
Score = 27.3 bits (61), Expect = 8.5
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 160 ITLSRRF-RSLK--LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA 216
+ L F L+ L +R G H L + ++ L V + F ++ H
Sbjct: 97 VVLGEDFEEFLEDDLKLPVRFLGDDIDIHRLETFLSPNPLAFNAVFIGRNFPLLNSYHLG 156
Query: 217 VVCFRVSPSA 226
+ +S A
Sbjct: 157 TAGYIISRKA 166
>gnl|CDD|220582 pfam10117, McrBC, McrBC 5-methylcytosine restriction system
component. Members of this family of bacterial proteins
modify the specificity of mcrB restriction by expanding
the range of modified sequences restricted.
Length = 317
Score = 27.6 bits (62), Expect = 9.5
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 26/111 (23%)
Query: 151 QVVDYKDWQIT-LSRRFRSLKLW--FVLRNYGVANLRHFLRSH---VNMAKLFERLVG-- 202
D++ W++ L+ R+ L +L N + +++ M KLFE V
Sbjct: 169 SAKDFQKWRLNRLNARYELLLPLARLILSNQSPLASQGDQKAYSLLFPMEKLFEDYVAKL 228
Query: 203 ----SDKRFEVVF--PRHFAVV-----CFRVSPSAVMDK-------LKTKY 235
+V + + F + P ++ K L TK+
Sbjct: 229 LRKQLPPDAKVKTQGSSKYLLKHEGTGRFSLRPDILIRKTGETVIVLDTKW 279
>gnl|CDD|214767 smart00663, RPOLA_N, RNA polymerase I subunit A N-terminus.
Length = 295
Score = 27.5 bits (62), Expect = 9.6
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 240 LSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQE 299
L+ E + N + L + +G + + G ++ A + + H+ + +V+
Sbjct: 141 LTFPEIVTPLNIDKLRKLVRNGPNGAKYIIRGKKTNLKLAKKSKI--ANHLKIGD-IVER 197
Query: 300 HL 301
H+
Sbjct: 198 HV 199
>gnl|CDD|131121 TIGR02066, dsrB, sulfite reductase, dissimilatory-type beta
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction.
It remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers
of either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster
prosthetic center. Found in sulfate-reducing bacteria,
these genes are commonly located in an unidirectional
gene cluster. This model describes the beta subunit of
sulfite reductase [Central intermediary metabolism,
Sulfur metabolism].
Length = 341
Score = 27.5 bits (61), Expect = 10.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 53 GTTAITAVDTLKPLCDVAKQFG 74
GT + +VDTL+ LCD+A ++
Sbjct: 36 GTPRLLSVDTLRKLCDIADKYS 57
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.407
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,638,107
Number of extensions: 1476425
Number of successful extensions: 1379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1367
Number of HSP's successfully gapped: 47
Length of query: 310
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 213
Effective length of database: 6,635,264
Effective search space: 1413311232
Effective search space used: 1413311232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.3 bits)