RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046506
(310 letters)
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 382 bits (983), Expect = e-132
Identities = 118/310 (38%), Positives = 166/310 (53%), Gaps = 26/310 (8%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +AI + + + +L + D AGLIP F+ AT+GTT+ +
Sbjct: 197 RAGLIGGV---KLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N HKW DC
Sbjct: 252 DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + +P YLK+ S + DY+ WQ+ L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L+ ++R HV ++ FE V D RFEV +VCFR+ S
Sbjct: 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS--------------- 416
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+ N LLE IN++ K ++ L G + +RFA + E HV +AW ++
Sbjct: 417 ------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGL 470
Query: 301 LEALLSASKP 310
LL+A +
Sbjct: 471 AAELLAAEEG 480
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 379 bits (974), Expect = e-130
Identities = 108/306 (35%), Positives = 160/306 (52%), Gaps = 28/306 (9%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA I + + + ++ L ++L I D + GL+P+F+CAT+GTT + A
Sbjct: 203 KAGLISLV---KMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAF 257
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L L + + G+W+H+DAAYAG+A +CPEFR F+ G+E ADSF+ N KW DC
Sbjct: 258 DCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC 317
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
WVKD L + S NP YL++ S D+ WQI LSRRFRS+KLWFV+R++GV
Sbjct: 318 TGFWVKDKYKLQQTFSVNPIYLRHA--NSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGV 375
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
NL+ +R MAK FE LV +D FE+ RH +V FR+
Sbjct: 376 KNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGP--------------- 420
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
N +L+ I +G+ ++ A + IRF + T ++ W ++++
Sbjct: 421 ------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDA 474
Query: 301 LEALLS 306
+LS
Sbjct: 475 ATLILS 480
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 375 bits (965), Expect = e-129
Identities = 114/305 (37%), Positives = 162/305 (53%), Gaps = 29/305 (9%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A + G+ +++ + S ++ + +L I DV GLIP + T+GTT A
Sbjct: 197 RAGLLGGVKLRSVQ------SENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAF 250
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L V + +W+HVDAAYAGSA ICPE+RH + G+E ADSF+ N HKW DC
Sbjct: 251 DYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDC 310
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+W+KDPS +VN+ + +P YLK+ S DY+ WQI L RRFR+LKLWFVLR YGV
Sbjct: 311 SAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQIPLGRRFRALKLWFVLRLYGV 368
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
NL+ +R H N AK F L +D RFE+ + +VCFR+ S
Sbjct: 369 ENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS--------------- 413
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
NE N LL+ IN G ++ A + +Y +R A + T+ + +W V
Sbjct: 414 ------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAA 467
Query: 301 LEALL 305
+ +
Sbjct: 468 ADEME 472
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 370 bits (953), Expect = e-127
Identities = 64/308 (20%), Positives = 118/308 (38%), Gaps = 11/308 (3%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA +G N IK + P AKI + G +P ++ AT GTT A
Sbjct: 204 KAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF 261
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D ++ + D+ +++ +W+HVDAA+ G + + RH ++G+E A+S + N HK L C
Sbjct: 262 DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQC 321
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+ VK+ L YL + D D I R K W + + G
Sbjct: 322 SAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT 381
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVF--PRHFAVVCFRVSPSAVMDKLKTKYENS 238
+ + + +A+ + + + FE+VF VCF P ++ +
Sbjct: 382 VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP---- 437
Query: 239 LLSEEERINEFNRELLESINASGKAYMTHA-VLGGIYAIRFAAGATLTEERHVMVAWTVV 297
E++++ ++ + SG + + R + + +
Sbjct: 438 --QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEI 495
Query: 298 QEHLEALL 305
+ + L
Sbjct: 496 ERLGQDLH 503
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 367 bits (944), Expect = e-125
Identities = 75/306 (24%), Positives = 128/306 (41%), Gaps = 10/306 (3%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K A +G+ + R +K + P+ L +I G +P + AT GTT + A
Sbjct: 218 KGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAF 275
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L+ + DV ++ G+W+HVDAA+ GS + RH +DG++ ADS + N HK L C
Sbjct: 276 DPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQC 335
Query: 121 CCLWVKDPSD-LVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYG 179
L ++D S+ L + YL + +D D + RR LKLW + + G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395
Query: 180 VANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSL 239
L + +A+ + + FE+V F VCF P ++ K ++ +
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYH-- 453
Query: 240 LSEEERINEFNRELLESINASGKAYMTHAVLGG-IYAIRFAAGATLTEERHVMVAWTVVQ 298
ER+++ L E + G + + G R + + ++
Sbjct: 454 ----ERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELE 509
Query: 299 EHLEAL 304
+ L
Sbjct: 510 RLGQDL 515
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 355 bits (914), Expect = e-121
Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 24/305 (7%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K+A +G+ K + + + L I GLIP + T GTT A+
Sbjct: 217 KSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAI 274
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + D+A + +W+HVD AY G A I + + GVE A S S++ HK F+ T+ C
Sbjct: 275 DDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGVERAHSISVDFHKLFYQTISC 333
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
L V D S+ L + +YL + E + + D I ++RF +LK++ ++N G
Sbjct: 334 GALLVNDKSNF-KFLLHHADYLNREHDE---LPNLVDKSIATTKRFDALKVFMTMQNVGP 389
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L + ++ ++ +FE++ + V FR +
Sbjct: 390 KALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATH---------------- 433
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
E ++E N+ L G A + ++ G A++F + +
Sbjct: 434 -ETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINML 492
Query: 301 LEALL 305
L+
Sbjct: 493 AVELV 497
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 112 bits (281), Expect = 3e-28
Identities = 31/241 (12%), Positives = 72/241 (29%), Gaps = 34/241 (14%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA VG++++ + + + + I ++E G P + +T+
Sbjct: 191 KAVSFVGMNMRLVETVLDGDR--VYVPVEDIENAIKKEIELGNRPC-VLSTLTFFPPRNS 247
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGV--EGADSFSLNAHKWFFTTL 118
D + + + + + I ++ AY A + + D+ ++ K T +
Sbjct: 248 DDIVEIAKICENYDIPHIINGAY---AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPI 304
Query: 119 DCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY 178
++ D + + S + L +
Sbjct: 305 GGGLVYSTDAEFIKEI--------------------SLSYPGRASAT-PVVNTLVSLLSM 343
Query: 179 GVANLRHFLRSHVNMAKLFERLVGS-----DKRFEVVFPRHFAVVCFRVSPSAVMDKLKT 233
G N +++ N KL + L+ +F V + + P + KL
Sbjct: 344 GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYN 403
Query: 234 K 234
Sbjct: 404 L 404
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 104 bits (262), Expect = 2e-25
Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 34/247 (13%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAA G+ + R ++ ++ Y + + IN + + L +
Sbjct: 173 KAAYYFGMKL---RHVELDPTT-YQVDLGKVKKFINKN------TVLLVGSAPNFPHGIA 222
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAG------SACICPEFRHFIDGVEGADSFSLNAHKWF 114
D ++ L +A+++ + +HVD+ V G S S + HK+
Sbjct: 223 DDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYG 282
Query: 115 FTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL--SRR-FRSLKL 171
F + ++ ++ NP + TL SR +
Sbjct: 283 FAPKGSSVIMYRNSDLRMHQYYVNPAWTG-----------GLYGSPTLAGSRPGAIVVGC 331
Query: 172 WFVLRNYGVANLRHFLRSHVNMAK-LFERLVGSDKRFEVVFPRHFAVVCFR---VSPSAV 227
W + N G + V A + + + +++ ++V+ F ++ +
Sbjct: 332 WATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTLNIHEL 391
Query: 228 MDKLKTK 234
D+L K
Sbjct: 392 SDRLSKK 398
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 99.6 bits (248), Expect = 1e-23
Identities = 40/243 (16%), Positives = 74/243 (30%), Gaps = 30/243 (12%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KAAQ GI + Y ++ I + + + + V
Sbjct: 207 KAAQYFGIKL---VRTPLDAD--YRADVAAMREAITPN------TVVVAGSAPGYPHGVV 255
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPE-----FRHFIDGVEGADSFSLNAHKWFF 115
D + + +A + GI HVDA G E F +EG S S + HK+ +
Sbjct: 256 DPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGY 315
Query: 116 TTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWFV 174
+ + P L ++ Y SR S W
Sbjct: 316 GAKGTSVILYRRPDLLHYQYFIAADWPGG---------LYFSPTFAGSRPGALSATAWAA 366
Query: 175 LRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFR---VSPSAVMDKL 231
+ + G R + A + V + +++ V+ ++ VM+++
Sbjct: 367 MLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGD-PLWVIAVASDELNIYQVMEEM 425
Query: 232 KTK 234
+
Sbjct: 426 AGR 428
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 89.3 bits (221), Expect = 4e-20
Identities = 40/251 (15%), Positives = 87/251 (34%), Gaps = 38/251 (15%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K A+ +++ + +K ++ Y + P + ++ + + + A +G+T
Sbjct: 169 KFARYFEVEL---KEVKLSEGY-YVMDPQQAVDMVDEN------TICVAAILGSTLNGEF 218
Query: 61 DTLKPLCDVAKQFG------IWVHVDAAYAGSACICPEFRHFID-GVEGADSFSLNAHKW 113
+ +K L D+ + +HVDAA G D + S +++ HK+
Sbjct: 219 EDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKY 278
Query: 114 FFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL--SRR-FRSLK 170
+ ++ DL L + YL TL S+ + +
Sbjct: 279 GLVYAGIGWVIWRNKEDLPEELIFHINYLG-----------ADQPTFTLNFSKGSSQVIA 327
Query: 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVF-PRHFAVVCFRVSPS---- 225
++ L G R+ + + + + +RF +V +V F + S
Sbjct: 328 QYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHT 387
Query: 226 --AVMDKLKTK 234
+ D L+
Sbjct: 388 EFEISDMLRRY 398
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 83.6 bits (207), Expect = 3e-18
Identities = 43/245 (17%), Positives = 84/245 (34%), Gaps = 35/245 (14%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K +++ ++ + Y + + + + GTT + +
Sbjct: 138 KGREMMDLEY---IYAPIKED--YTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTI 187
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICP--EFRHFIDGVE-------GADSFSLNAH 111
D ++ L +AK+ I++HVDAA+ G + P + ++ GV G DS +++ H
Sbjct: 188 DNIEELSKIAKENNIYIHVDAAFGGL--VIPFLDDKYKKKGVNYKFDFSLGVDSITIDPH 245
Query: 112 KWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSR-RFRSLK 170
K + + KD L + YL + I +R F
Sbjct: 246 KMGHCPIPSGGILFKDI-GYKRYLDVDAPYLTETRQAT----------ILGTRVGFGGAC 294
Query: 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVS-PSAVMD 229
+ VLR G R + + + + + F+ V +V V
Sbjct: 295 TYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDEDYKEVCK 353
Query: 230 KLKTK 234
KL+ +
Sbjct: 354 KLRDR 358
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 75.4 bits (185), Expect = 2e-15
Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 43/256 (16%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K A+ +++ R I + P ++ + + + + T G T
Sbjct: 154 KFARYWDVEL---REIPMRPGQ-LFMDPKRMIEACDEN------TIGVVPTFGVTYTGNY 203
Query: 61 DTLKPLCDVAKQF------GIWVHVDAAYAGSACICPEFRHFID-GVEGADSFSLNAHKW 113
+ +PL D +F I +H+DAA G D + S S + HK+
Sbjct: 204 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKF 263
Query: 114 FFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL--SRR-FRSLK 170
L C + +D L L N +YL + + SR + +
Sbjct: 264 GLAPLGCGWVIWRDEEALPQELVFNVDYLG-----------GQIGTFAINFSRPAGQVIA 312
Query: 171 LWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA----VVCFRVSPS- 225
++ G + +A + +E + VCF++
Sbjct: 313 QYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 372
Query: 226 -------AVMDKLKTK 234
+ ++L+ +
Sbjct: 373 DPGYTLYDLSERLRLR 388
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 7e-05
Identities = 59/327 (18%), Positives = 90/327 (27%), Gaps = 132/327 (40%)
Query: 10 VKN-FRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLF---------------LCAT-- 51
+KN A K S +L + A L+ +F L T
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 52 --IGTTAITAVDTLKPLC----DVAKQF--GI----WVHV-----DAAYAGSACI-CPEF 93
+G + +TL L D K F G+ W+ D Y S I CP
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-- 239
Query: 94 RHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVV 153
I G AH + T L P +L + L S+ +V
Sbjct: 240 --LI----GVIQL---AH--YVVT---AKLLGFTPGELRSYLKG-------ATGHSQGLV 278
Query: 154 ------DYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSHVNMAK-LFERLVGSDKR 206
+ W+ F S LF +G R
Sbjct: 279 TAVAIAETDSWE-------------------------SFFVSVRKAITVLF--FIGV--R 309
Query: 207 FEVVFPRHFAVVCFRVSPSAVMDKLKTKYENS------LLS--------EEERINEFNRE 252
+P + PS + D L EN+ +LS ++ +N+ N
Sbjct: 310 CYEAYPN------TSLPPSILEDSL----ENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 253 LLES-------INASGKAYMTHAVLGG 272
L +N + + V+ G
Sbjct: 360 LPAGKQVEISLVNGA-----KNLVVSG 381
Score = 30.8 bits (69), Expect = 0.62
Identities = 40/263 (15%), Positives = 72/263 (27%), Gaps = 92/263 (34%)
Query: 92 EFRHFI-----DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKA 146
+F ++ G LN F C L D L L +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN---CYLEGNDIHALAAKLLQEND---TTL 116
Query: 147 TESKQVV-DYKDWQITLSRR---------FRSL-----KL------------WFV-LRN- 177
++K+++ +Y +I R FR++ +L +F LR+
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 178 ---YGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTK 234
Y + ++ A+ L+ + E VF + ++
Sbjct: 177 YQTYH-VLVGDLIKF---SAETLSELIRTTLDAEKVFTQGLNIL---------------- 216
Query: 235 YENSLLSEEERINEFNRELLESINASGKAYMTHA-V-LGGIYAIRFA--------AGATL 284
L K Y+ + I I+ A G T
Sbjct: 217 ---EWLENPSN-------------TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 285 TEERHVMVAWTVVQEHLEALLSA 307
E R + T H + L++A
Sbjct: 261 GELRSYLKGATG---HSQGLVTA 280
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 42.7 bits (100), Expect = 8e-05
Identities = 17/86 (19%), Positives = 29/86 (33%)
Query: 46 LFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105
L L +T A D L+ L + + I V+ AY + C V D+
Sbjct: 200 LCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDA 259
Query: 106 FSLNAHKWFFTTLDCCCLWVKDPSDL 131
F + K F + + + +
Sbjct: 260 FVQSLDKNFMVPVGGAIIAGFNEPFI 285
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 42.4 bits (99), Expect = 1e-04
Identities = 17/84 (20%), Positives = 29/84 (34%)
Query: 46 LFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADS 105
L + +T A D L+ L + + I V+ AY + C V D+
Sbjct: 218 LCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA 277
Query: 106 FSLNAHKWFFTTLDCCCLWVKDPS 129
F + K F + + + S
Sbjct: 278 FVQSLDKNFMVPVGGAIIAGFNDS 301
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 37.8 bits (88), Expect = 0.003
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 12/127 (9%)
Query: 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD 61
AA+ G+++ + T Y ++P++ I + G + L L D
Sbjct: 109 AAERAGLNIA---LVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD 165
Query: 62 TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVE-GADSFSLNAHKWFFTTLDC 120
+K + V ++ + + V+ AYA + E GAD + HK +
Sbjct: 166 -VKKIAKVCSEYDVPLLVNGAYA-----IGRMP--VSLKEIGADFIVGSGHKSMAASGPI 217
Query: 121 CCLWVKD 127
+ +K+
Sbjct: 218 GVMGMKE 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.010
Identities = 35/244 (14%), Positives = 71/244 (29%), Gaps = 86/244 (35%)
Query: 131 LVNSLSTNPEYLKNK-ATESKQ-VVDYKDWQITLSRRFRSLKLW---FVLRNYGVANLRH 185
+ L N ++L + TE +Q + + + R + +++ V R LR
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 186 FL---RSHVN-----MA---KLFERLVGS---DKRFEVVFPRHFAV-------------- 217
L R N + K + + + F +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETV 198
Query: 218 ------VCFRVSPS----------------AVMDKLKT-----KYENSLL-----SEEER 245
+ +++ P+ ++ +L+ YEN LL +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 246 INEFN---RELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEHLE 302
N FN + LL + F + AT T + T+ + ++
Sbjct: 259 WNAFNLSCKILLTTRFKQ--------------VTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 303 ALLS 306
+LL
Sbjct: 305 SLLL 308
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 35.2 bits (80), Expect = 0.025
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 13/123 (10%)
Query: 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV-- 60
+ + I + +T L I ++ + T + V
Sbjct: 144 CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSM 203
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-----------IDGVEGADSFSLN 109
LK + ++AKQ GI+V +D+A + R D + AD+ +++
Sbjct: 204 SNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMS 263
Query: 110 AHK 112
A K
Sbjct: 264 AKK 266
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 33.3 bits (77), Expect = 0.086
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 26 LSPDSLMAKINSDVE----AGLIPLFL-CATIGTTAITAVDTLKPLCDVAKQFGIWVHVD 80
L L + V + + AT + T +D ++ + DV K + +H+D
Sbjct: 121 LDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYT-LDEIEAIGDVCKSSSLGLHMD 179
Query: 81 AAYAGSACICPEFR-HFIDGVEGADSFSL 108
+ +A + + G D+ S
Sbjct: 180 GSRFANALVSLGCSPAEMTWKAGVDALSF 208
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 32.0 bits (72), Expect = 0.22
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 17/125 (13%)
Query: 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFL----CATIGTTAIT 58
A V I + + L I+ + A I G ++
Sbjct: 135 AVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLID-EKGAENIAYICLAVTVNLAGGQPVS 193
Query: 59 AVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-----------IDGVEGADSFS 107
+ ++ + ++ + GI V DA + + + AD +
Sbjct: 194 -MANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCT 252
Query: 108 LNAHK 112
++ K
Sbjct: 253 MSGKK 257
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 31.8 bits (73), Expect = 0.23
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRH-FIDGVEGADSFSL 108
L+ + K+ G+++ +D A SA P D D F +
Sbjct: 164 QELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYI 212
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 31.8 bits (73), Expect = 0.30
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 54 TTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84
T A + L L + AK+ G + D+AYA
Sbjct: 211 TGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 31.0 bits (71), Expect = 0.41
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 54 TTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84
T + D L+ + A + I + DAAY+
Sbjct: 176 TGTVLNKDQLRAIVHYAIEHEILILFDAAYS 206
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 31.1 bits (71), Expect = 0.50
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 54 TTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84
T A L L + A++ G + DAAYA
Sbjct: 222 TGAAATRAQLTELVNFARKNGSILVYDAAYA 252
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 31.0 bits (71), Expect = 0.51
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 12/55 (21%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-IDGVE--GADSFSLNAHKWF 114
L+ + + G V VD + A + +D + AD ++NAH W
Sbjct: 184 LRAMTKLVHDVGALVVVDHSAAAP--------YRLLD-IRETDADVVTVNAHAWG 229
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 31.0 bits (71), Expect = 0.52
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 54 TTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84
T A+ + +A++ G+W+ D Y
Sbjct: 171 TGAVADWGYFEEALGLARKHGLWLIHDNPYV 201
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 30.6 bits (70), Expect = 0.63
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 54 TTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84
T +D + + +AKQ+ + V D AYA
Sbjct: 185 TAQCVELDFFERVVALAKQYDVMVVHDLAYA 215
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 30.4 bits (69), Expect = 0.67
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 59 AVDTLKPLCDVAKQFGIWVHVDA 81
A+ L+ + A+ G++V +D
Sbjct: 132 ALALLREVLREAEPRGVFVRLDM 154
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo
sapiens}
Length = 224
Score = 30.2 bits (68), Expect = 0.76
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 22/128 (17%)
Query: 89 ICPEFRHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLK-NKAT 147
+ ++ L DL L +YL A
Sbjct: 107 VLERVDEWMAK------EGLLDPNVKS----IFVTC--GDWDLKVMLPGQCQYLGLPVAD 154
Query: 148 ESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGVANLRHFLRSH------VNMAKLFERLV 201
KQ ++ K + L + + L+H R H N+A + + L
Sbjct: 155 YFKQWINLKKAYSFAMGCWPKNGLLDMNKGLS---LQHIGRPHSGIDDCKNIANIMKTLA 211
Query: 202 GSDKRFEV 209
F+
Sbjct: 212 YRGFIFKQ 219
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 30.2 bits (69), Expect = 0.90
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 54 TTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84
T + + K + D AY
Sbjct: 194 TGSTATKEVFDEAIAKFKGTDTKIVHDFAYG 224
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 30.2 bits (69), Expect = 0.92
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 13/75 (17%)
Query: 16 IKTTKSSSYGLSPDSLMAKINSDVEAGLI-----PLFLCATIGTTAITAVDTLKPLCDVA 70
+ + + + + L I + I P T A+ L+ L ++A
Sbjct: 132 WQIEEENGWLPDLEKLRQLIRPTTKMICINNANNP--------TGAVMDRTYLEELVEIA 183
Query: 71 KQFGIWVHVDAAYAG 85
+ G ++ D Y
Sbjct: 184 SEVGAYILSDEVYRS 198
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 29.6 bits (67), Expect = 1.3
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 13/75 (17%)
Query: 16 IKTTKSSSYGLSPDSLMAKINSDVEAGLI-----PLFLCATIGTTAITAVDTLKPLCDVA 70
+ L + + P T + L+ + ++A
Sbjct: 160 FDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNP--------TWQCMTDEELRIIGELA 211
Query: 71 KQFGIWVHVDAAYAG 85
+ + V D AY G
Sbjct: 212 TKHDVIVIEDLAYFG 226
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 29.4 bits (67), Expect = 1.4
Identities = 9/87 (10%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCA----TIGTTAI 57
A+ G+ V + + + +++KI+ + + + G +
Sbjct: 114 NAKKHGVSVVFSYL-----DENMCIDYEDIISKID---DVDSV--IIGNPNNPN-GG--L 160
Query: 58 TAVDTLKPLCDVAKQFGIWVHVDAAYA 84
+ + +A++ + +D A+
Sbjct: 161 INKEKFIHVLKLAEEKKKTIIIDEAFI 187
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 29.5 bits (67), Expect = 1.5
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 54 TTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84
T +++ L +A + + D Y+
Sbjct: 167 TGRTLSLEELISWVKLALKHDFILINDECYS 197
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 29.5 bits (67), Expect = 1.6
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 54 TTAITAVDTLKPLCDVAKQFGIWVHVDAAYA 84
+ ++ +D K + D+ ++G + D Y+
Sbjct: 181 SGSVLDLDGWKEVFDLQDKYGFIIASDECYS 211
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 29.1 bits (66), Expect = 2.1
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYA 84
L L +++K+FG + VD +++
Sbjct: 205 LAELVNISKEFGCALLVDESHS 226
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 28.7 bits (65), Expect = 2.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYA 84
LK +CD+A ++ V VD ++A
Sbjct: 194 LKSICDLADKYNALVMVDDSHA 215
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 28.7 bits (65), Expect = 2.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYA 84
LK +CD+A ++ V VD ++A
Sbjct: 196 LKGVCDLADKYDALVMVDDSHA 217
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 28.3 bits (64), Expect = 3.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYA 84
LK + VAK+ G V VD A++
Sbjct: 213 LKEMVAVAKKHGAMVLVDEAHS 234
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 28.4 bits (64), Expect = 3.4
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 19/71 (26%)
Query: 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT------LKPLCDVAKQFGIW 76
+Y + D L I + A+ + + ++ K+ I
Sbjct: 104 TYNIDVDLLKLAIKECEKK------------PKALILTHLYGNAAKMDEIVEICKENDIV 151
Query: 77 VHVDAAYA-GS 86
+ DAA A GS
Sbjct: 152 LIEDAAEALGS 162
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 28.3 bits (64), Expect = 3.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYA 84
L L +A +F V VD A++
Sbjct: 192 LPELTSIANEFDAAVMVDDAHS 213
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP;
1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB:
1mdx_A* 1mdz_A*
Length = 393
Score = 28.3 bits (64), Expect = 3.7
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 21/68 (30%)
Query: 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT------LKPLCDVAKQFGIW 76
+ ++P+ + A I T AI V L + + +++GI
Sbjct: 112 TLMVTPEHIEAAITPQ---------------TKAIIPVHYAGAPADLDAIYALGERYGIP 156
Query: 77 VHVDAAYA 84
V DAA+A
Sbjct: 157 VIEDAAHA 164
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 28.0 bits (63), Expect = 3.9
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYA 84
+K +CD+A++FG ++D +A
Sbjct: 197 IKEICDIAEEFGALTYIDEVHA 218
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 28.1 bits (63), Expect = 4.4
Identities = 2/22 (9%), Positives = 10/22 (45%)
Query: 60 VDTLKPLCDVAKQFGIWVHVDA 81
+D ++ + + ++ +D
Sbjct: 246 LDRMRRIFKKVMELNGFLCIDM 267
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate,
aspartate aminotransferase, O-antigen; HET: G4M; 1.60A
{Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Length = 391
Score = 27.9 bits (63), Expect = 4.5
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 21/68 (30%)
Query: 23 SYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDT------LKPLCDVAKQFGIW 76
++ L L A I T AI V + P+ +VA++ +
Sbjct: 129 TFNLDAAKLEALITPR---------------TKAIMPVHLYGQICDMDPILEVARRHNLL 173
Query: 77 VHVDAAYA 84
V DAA A
Sbjct: 174 VIEDAAEA 181
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 28.2 bits (63), Expect = 4.9
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 60 VDTLKPLCDVAKQFGIWVHVDA 81
V L L AK + VDA
Sbjct: 260 VPQLLDLAQRAKAHDLNFTVDA 281
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 27.6 bits (62), Expect = 5.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 26 LSPDSLMAKINSD----VEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDA 81
+ PD + I LI + + ++ +K +C +AK+ GI VH+D
Sbjct: 114 MDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDG 173
Query: 82 AYAGSACI 89
A +A I
Sbjct: 174 ARIFNASI 181
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 27.7 bits (61), Expect = 5.4
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLF----LCATIGTTAIT 58
+ + +K + L I +V +P + G ++
Sbjct: 144 CTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIE-EVGPNNVPYIVATITSNSAGGQPVS 202
Query: 59 AVDTLKPLCDVAKQFGIWVHVDAA 82
+ LK + +AK++ I V +D+A
Sbjct: 203 -LANLKAMYSIAKKYDIPVVMDSA 225
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 27.5 bits (62), Expect = 5.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 63 LKPLCDVAKQFGIWVHVDAAYA 84
L + V +Q W+ VD A+
Sbjct: 187 LAEIQQVTQQHNGWLMVDDAHG 208
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 27.2 bits (61), Expect = 7.5
Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 18/84 (21%)
Query: 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIG--TTAITAV 60
I + F D I + + T +
Sbjct: 156 PNIELLPEGQF-----------KYHVDFEHLHIGEETGMICVSRP-----TNPTGNVITD 199
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYA 84
+ L L +A Q I + +D AY
Sbjct: 200 EELMKLDRLANQHNIPLVIDNAYG 223
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 26.7 bits (60), Expect = 9.5
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCA----TIGTTAI 57
A G +++ + + + D+++ + D++ LFLC T G +
Sbjct: 114 ALAQSGCEIRRWS----LREADGWQLTDAILEALTPDLDC----LFLCTPNNPT-GL--L 162
Query: 58 TAVDTLKPLCDVAKQFGIWVHVDAAYA 84
L+ + D K I + +D A+
Sbjct: 163 PERPLLQAIADRCKSLNINLILDEAFI 189
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 26.9 bits (60), Expect = 10.0
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 38 DVEAGLIP---LFLCATIGTT--AITAVDTLKPLCDVAKQFGIWVHVDAA 82
D+++ P + + + A + L+ + + + GI +H+D A
Sbjct: 130 DIKSLREPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGA 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.407
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,740,355
Number of extensions: 281574
Number of successful extensions: 661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 61
Length of query: 310
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 217
Effective length of database: 4,105,140
Effective search space: 890815380
Effective search space used: 890815380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)