RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 046506
(310 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 214 bits (545), Expect = 8e-67
Identities = 116/306 (37%), Positives = 162/306 (52%), Gaps = 26/306 (8%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
+A I G+ +K + + +L + D AGLIP F+ AT+GTT+ +
Sbjct: 197 RAGLIGGVKLKAIP-----SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSF 251
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L + + + IW+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N HKW DC
Sbjct: 252 DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 311
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
+WVK +DL + +P YLK+ S + DY+ WQ+ L RRFRSLK+WFV R YGV
Sbjct: 312 SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV 371
Query: 181 ANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVSPSAVMDKLKTKYENSLL 240
L+ ++R HV ++ FE V D RFEV +VCFR+ S
Sbjct: 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS--------------- 416
Query: 241 SEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWTVVQEH 300
+ N LLE IN++ K ++ L G + +RFA + E HV +AW ++
Sbjct: 417 ------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGL 470
Query: 301 LEALLS 306
LL+
Sbjct: 471 AAELLA 476
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 92.6 bits (229), Expect = 1e-21
Identities = 36/294 (12%), Positives = 74/294 (25%), Gaps = 36/294 (12%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K A+ ++++ + P ++ + + + + T +
Sbjct: 166 KFARYWDVELREIPMRPGQ----LFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPL 221
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGS-ACICPEFRHFIDGVEGADSFSLNAHKWFFTTLD 119
I +H+DAA G A + + S S + HK+ L
Sbjct: 222 HDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG 281
Query: 120 CCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNY- 178
C + +D L L N +YL + I SR + +
Sbjct: 282 CGWVIWRDEEALPQELVFNVDYLG---------GQIGTFAINFSRPAGQVIAQYYEFLRL 332
Query: 179 GVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA----VVCFRVSPSAVMDKLKTK 234
G + +A + +E + VCF++
Sbjct: 333 GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE-------- 384
Query: 235 YENSLLSEEERINEFNRELLES-INASGKAYMTHAVLGGIYAIRFAAGATLTEE 287
+ + + L A+ I +R +
Sbjct: 385 ------DPGYTLYDLSERLRLRGWQVP--AFTLGGEATDIVVMRIMCRRGFEMD 430
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 86.5 bits (213), Expect = 1e-19
Identities = 38/312 (12%), Positives = 85/312 (27%), Gaps = 57/312 (18%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
KA VG++++ + + + + I ++E G P + +T+
Sbjct: 171 KAVSFVGMNMRLVETVLDGDR--VYVPVEDIENAIKKEIELGNRP-CVLSTLTFFPPRNS 227
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D + + + + + I ++ AYA E D+ ++ K T +
Sbjct: 228 DDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDKNLLTPIGG 286
Query: 121 CCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWFVLRNYGV 180
++ D + + P + + L + G
Sbjct: 287 GLVYSTDAEFIKEISLSYPGR---------------------ASATPVVNTLVSLLSMGS 325
Query: 181 ANLRHFLRSHVNMAKLFERL---VGSDKRFEVVFPRHFAVVCFRVS--PSAVMDKLKTKY 235
N +++ N KL + L + + + C V+ P + KL
Sbjct: 326 KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNL- 384
Query: 236 ENSLLSEEERINEFNRELLESINASGKAYMTHAVLGGIYAIRFAAGATLTEERHVMVAWT 295
+G + G + + + A
Sbjct: 385 ----------------------RVTGPRGIKKTDHFGNCYLGTYTHDYIV----MNAAIG 418
Query: 296 VVQEHLEALLSA 307
V E + +S
Sbjct: 419 VRTEDIVNSVSK 430
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 78.1 bits (191), Expect = 9e-17
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 4/131 (3%)
Query: 1 KAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAV 60
K+ G + + ++ AKI ++ L +T A
Sbjct: 155 KSMVTAGFEPVVIENVLEGDELRT--DLKAVEAKIQELGPEHIL--CLHSTTACFAPRVP 210
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFTTLDC 120
D L+ L + + I V+ AY + C V D+F + K F +
Sbjct: 211 DRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGG 270
Query: 121 CCLWVKDPSDL 131
+ + +
Sbjct: 271 AIIAGFNEPFI 281
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 42.6 bits (99), Expect = 3e-05
Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 13/139 (9%)
Query: 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD- 61
+ + +K + L I + + T + V
Sbjct: 144 CTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSL 203
Query: 62 -TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF-----------IDGVEGADSFSLN 109
LK + +AK++ I V +D+A + R + + AD +++
Sbjct: 204 ANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263
Query: 110 AHKWFFTTLDCCCLWVKDP 128
A K + D
Sbjct: 264 AKKDAMVPMGGLLCMKDDS 282
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 39.4 bits (91), Expect = 5e-04
Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 13/138 (9%)
Query: 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEA--GLIPLFLCATIGTTAITAV 60
A V I + + L I I L + + ++
Sbjct: 135 ATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSM 194
Query: 61 DTLKPLCDVAKQFGIWVHVDAA-YAGSACICPEFRHFIDGV----------EGADSFSLN 109
++ + ++A +GI + DA +A E + V AD +++
Sbjct: 195 ANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMS 254
Query: 110 AHKWFFTTLDCCCLWVKD 127
K + +
Sbjct: 255 GKKDCLVNIGGFLCMNDE 272
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 36.0 bits (82), Expect = 0.005
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 6/95 (6%)
Query: 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD 61
A + G + T + + L+ D L + A +I T A+
Sbjct: 126 AVILAGGKP---VEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPT---GAVLTKK 179
Query: 62 TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF 96
L+ + D + + V D Y
Sbjct: 180 DLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSI 214
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 33.1 bits (75), Expect = 0.026
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 26 LSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAG 85
LSP+ L+ + +EA P + + + T + L +A + + + + A
Sbjct: 2 LSPEQLVLTL---LEA--EPPNVLVSRPSMPFTEASMMMSLTKLADKELVHM-IGWA--- 52
Query: 86 SACICPEFRHFIDGVEGADSFSLNAHKWF-FTTLDCCCLWVKDPSDLVNSLSTNPEYLKN 144
P F D L W + + P L+ + + ++
Sbjct: 53 --KKIPGFVELSL----LDQVRLLESCWMEVLMVGLMWRSIDHPGKLI--FAPDLVLDRD 104
Query: 145 KATESKQVVDYKDWQITLSRRFRSLKL 171
+ + +++ D + + RFR LKL
Sbjct: 105 EGKCVEGILEIFDMLLATTSRFRELKL 131
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 31.8 bits (71), Expect = 0.11
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 7/127 (5%)
Query: 3 AQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINS--DVEAGLIPLFLCATIGTTAITAV 60
+ + I + +T L I I + ++
Sbjct: 143 CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSM 202
Query: 61 DTLKPLCDVAKQFGIWVHVDAAYAGSACI-----CPEFRHFIDGVEGADSFSLNAHKWFF 115
LK + ++AKQ GI+V +D+A P++++ D +
Sbjct: 203 SNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMS 262
Query: 116 TTLDCCC 122
D
Sbjct: 263 AKKDPLL 269
>d2hxja1 a.136.1.1 (A:3-118) Hypothetical protein NMB1681 {Neisseria
meningitidis [TaxId: 487]}
Length = 116
Score = 28.2 bits (63), Expect = 0.59
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 138 NPEYLKNKATESKQVVDYKDWQITLSRRFRSLK------LWFVLRNYGVANLRHFLRSHV 191
+ +K +++ + D+ + + +RF+ L L L Y A + L +H
Sbjct: 11 SAVQTMSKKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHC 70
Query: 192 NMAKLFERLVGSDKRFEV 209
+ + L KRF++
Sbjct: 71 RRPRYLKALARGGKRFDL 88
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4
12-hydroxydehydrogenase/prostaglandin 15-keto reductase
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 182
Score = 27.3 bits (59), Expect = 1.8
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Query: 44 IPL-FLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102
+PL TIG +TA L +C V + V A GS V
Sbjct: 1 LPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGA 60
Query: 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSD 130
A S A+ + +
Sbjct: 61 AGSDEKIAYLKQIGFDAAFNYKTVNSLE 88
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 26.2 bits (57), Expect = 4.6
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 10/115 (8%)
Query: 95 HFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVD 154
+ D L W + +W + N +N+ + +V+
Sbjct: 59 PGFVDLTLHDQVHLLECAWLEILM-IGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVE 117
Query: 155 YKDWQITLSRRFRSLKL---------WFVLRNYGVANLRHFLRSHVNMAKLFERL 200
D + S RFR + L +L N GV + R+
Sbjct: 118 IFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRV 172
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 25.8 bits (56), Expect = 5.7
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 15/130 (11%)
Query: 44 IPLFLCATIGTTAITAVDTLKPLCDVA-KQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102
++ A +G + D + +C A KQ V A P F
Sbjct: 18 TETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEW-------AKRIPHFSELPL---- 66
Query: 103 ADSFSLNAHKWF-FTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQIT 161
D L W + ++ L+T +N A + +
Sbjct: 67 DDQVILLRAGWNELLIASFSHRSIAVKDGIL--LATGLHVHRNSAHSAGVGAIFDRVLTE 124
Query: 162 LSRRFRSLKL 171
L + R +++
Sbjct: 125 LVSKMRDMQM 134
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 25.9 bits (56), Expect = 5.8
Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 25/173 (14%)
Query: 58 TAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWF-FT 116
+ L L ++ ++ VHV A P FR+ D ++ + W
Sbjct: 28 SFAALLSSLNELGER--QLVHV----VKWAKALPGFRNLHV----DDQMAVIQYSWMGLM 77
Query: 117 TLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLW---F 173
+ + + + + + + + +S ++ LS+ F L++ F
Sbjct: 78 VFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKS-RMYSQCVRMRHLSQEFGWLQITPQEF 136
Query: 174 VL----------RNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFA 216
+ G+ N + F +N K +R++ ++ R F
Sbjct: 137 LCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFY 189
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 26.1 bits (56), Expect = 6.6
Identities = 20/202 (9%), Positives = 50/202 (24%), Gaps = 19/202 (9%)
Query: 43 LIPLFLCATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEG 102
++ C T ++ + L ++ + G D AY G A E
Sbjct: 174 VVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA---------RGLEED 224
Query: 103 ADSFSLNAHKWFFTTLDCCCLWVKDPSDLVNSLSTNPEYLKNKATESKQVVDYKDWQITL 162
A+ A + + T + +
Sbjct: 225 AEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYS 284
Query: 163 SRRFRSLKLWFVLRN--YGVANLRHFLRSHVNMAK-----LFERL--VGSDKRFEVVFPR 213
+ + + + A L + L G+++ F + +
Sbjct: 285 NPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQ 344
Query: 214 HFAVVCFRVSPSAVMDKLKTKY 235
+ ++ V +L+ ++
Sbjct: 345 NGMFSFSGLTKEQV-LRLREEF 365
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing
protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 24.9 bits (53), Expect = 6.8
Identities = 5/54 (9%), Positives = 12/54 (22%)
Query: 170 KLWFVLRNYGVANLRHFLRSHVNMAKLFERLVGSDKRFEVVFPRHFAVVCFRVS 223
++W + L S L R + +++
Sbjct: 18 EVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQ 71
>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol
dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 187
Score = 25.4 bits (54), Expect = 7.7
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Query: 50 ATIGTTAITAVDTLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLN 109
IG +T++ ++ ++ + V A + + H + G
Sbjct: 7 GAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLL-GCSRVVGICGT 65
Query: 110 AHKWFFTTLDCCCLWVKD 127
K F T + +
Sbjct: 66 QEKCLFLTSELGFDAAVN 83
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 25.9 bits (56), Expect = 7.9
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 2 AAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAKINSDVEAGLIPLFLCATIGTTAITAVD 61
++V + + TT + + +SP+ + I + + T + D
Sbjct: 127 YPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPT---GMVYTPD 183
Query: 62 TLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHF 96
++ + VA + G+WV D Y +
Sbjct: 184 EVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSI 218
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.407
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,141,712
Number of extensions: 52001
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 21
Length of query: 310
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,240,546
Effective search space: 279122850
Effective search space used: 279122850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)