BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046507
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 10/158 (6%)
Query: 21 YFENGF-QSIGMNY------YPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDG 73
Y +N F S G N+ YPPCP+P+ I GL H+D + +L + ++V GLQ+ KDG
Sbjct: 142 YLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG 201
Query: 74 KWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYP 133
+WI V P ++ VVN+G LE++TNG Y+S+ HRVI R S+ + Y D +YP
Sbjct: 202 QWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYP 261
Query: 134 ASNLV---AENNPPLFKRVPVEEYFRNLCARKLRGKSP 168
A LV AE N ++ + ++Y + K + K P
Sbjct: 262 APALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAKEP 299
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 28 SIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVV 87
+ +NYYP CPQPE +G+ H+D SALT +L N V GLQ+ +GKW+ P++ V+
Sbjct: 210 QMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVM 268
Query: 88 NIGVVLEIVTNGTYRSIEHRVIVNSVQGRLS 118
+IG LEI++NG Y+SI HR +VN + R+S
Sbjct: 269 HIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 28 SIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVV 87
+ +NYYP CPQPE +G+ H+D SALT +L N V GLQ+ +GKW+ P++ V+
Sbjct: 211 QMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVM 269
Query: 88 NIGVVLEIVTNGTYRSIEHRVIVNSVQGRLS 118
+IG LEI++NG Y+SI HR +VN + R+S
Sbjct: 270 HIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 31 MNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIG 90
+NYYP CPQPE +G+ H+D SALT +L N V GLQ+ +GKW+ P++ V +IG
Sbjct: 214 INYYPKCPQPELALGVEAHTDVSALTFILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIG 272
Query: 91 VVLEIVTNGTYRSIEHRVIVNSVQGRLS 118
LEI++NG Y+SI HR +VN + R+S
Sbjct: 273 DTLEILSNGKYKSILHRGLVNKEKVRIS 300
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 13/118 (11%)
Query: 2 NLVSKMGKVL-----IIKVEELREYF----ENGFQSIGMNYYPPCPQPEKIVGLTPHSDD 52
+L GKVL +K+E R++F ++G + + +YPP P+ V H D
Sbjct: 137 SLDGXGGKVLEAIATYLKLE--RDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDI 194
Query: 53 SALTILLEINEVEGLQI-KKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVI 109
+ +T+LL E GL++ +DG+W+P+ P P V+NIG LE +TN S HRV+
Sbjct: 195 NTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV 251
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 33 YYPPCPQPEK--IVGLTPHSDDSALTILLEINEVEGLQIK-KDGKWIPVTPFPNAFVVNI 89
+YPP E+ + H D + +T+L NE GLQ+K KDG W+ V ++NI
Sbjct: 156 HYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINI 214
Query: 90 GVVLEIVTNGTYRSIEHRVI----VNSVQGRLSI 119
G L+ ++G + S HRVI + + R+S+
Sbjct: 215 GDXLQEASDGYFPSTSHRVINPEGTDKTKSRISL 248
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 31 MNYYPPCPQ----PEKIVGLTPHSDDSALTILLEINEVEG---LQIKKDGKWIPVTPFPN 83
Y+P P+ E+ + + PH D S +T++ + G LQ + G + + P+
Sbjct: 161 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 220
Query: 84 AFVVNIGVVLEIVTNGTYRSIEHRVIV---NSVQGRLSIGTIYLV 125
A +V G + +VT G ++ H V + + G +++ +
Sbjct: 221 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSQTSSVFFL 265
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 31 MNYYPPCPQ----PEKIVGLTPHSDDSALTILLEINEVEG---LQIKKDGKWIPVTPFPN 83
Y+P P+ E+ + + PH D S +T++ + G LQ + G + + P+
Sbjct: 161 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 220
Query: 84 AFVVNIGVVLEIVTNGTYRSIEHRVIV---NSVQGRLSIGTIYLV 125
A +V G + +VT G ++ H V + + G +++ +
Sbjct: 221 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFL 265
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 31 MNYYPPCPQ----PEKIVGLTPHSDDSALTILLEINEVEG---LQIKKDGKWIPVTPFPN 83
Y+P P+ E+ + + PH D S +T++ + G LQ + G + + P+
Sbjct: 161 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 220
Query: 84 AFVVNIGVVLEIVTNGTYRSIEHRVIV---NSVQGRLSIGTIYLV 125
A +V G + +VT G ++ H V + + G +++ +
Sbjct: 221 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFL 265
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 31 MNYYPPCPQ----PEKIVGLTPHSDDSALTILLEINEVEG---LQIKKDGKWIPVTPFPN 83
Y+P P+ E+ + + PH D S +T++ + G LQ + G + + P+
Sbjct: 181 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 240
Query: 84 AFVVNIGVVLEIVTNGTYRSIEHRVIV---NSVQGRLSIGTIYLV 125
A +V G + +VT G ++ H V + + G +++ +
Sbjct: 241 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFL 285
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 31 MNYYPPCPQ----PEKIVGLTPHSDDSALTILLEINEVEG---LQIKKDGKWIPVTPFPN 83
Y+P P+ E+ + + PH D S +T++ + G LQ + G + + P+
Sbjct: 161 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 220
Query: 84 AFVVNIGVVLEIVTNGTYRSIEHRVIV---NSVQGRLSIGTIYLV 125
A +V G + +VT G ++ H V + + G +++ +
Sbjct: 221 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFL 265
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 49 HSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRV 108
H D S +T+L + N V+ LQ++ + + +++N G + +TN Y++ HRV
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 49 HSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRV 108
H D S +T+L + N V+ LQ++ + + +++N G + +TN Y++ HRV
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
>pdb|3K6O|A Chain A, Crystal Structure Of Protein Of Unknown Function Duf1344
(Yp_001299214.1) From Bacteroides Vulgatus Atcc 8482 At
2.00 A Resolution
pdb|3K6O|B Chain B, Crystal Structure Of Protein Of Unknown Function Duf1344
(Yp_001299214.1) From Bacteroides Vulgatus Atcc 8482 At
2.00 A Resolution
Length = 224
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 20 EYFENGFQ-SIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPV 78
E E+GF +I +N Y P +KI+GL P + DS ++I + + ++
Sbjct: 67 EAGESGFAYNIRLNDYTLVPV-QKIIGLNPDNXDSIGNXKVQIKDXWPSDDYLNVRFXLN 125
Query: 79 TPFPNAFVVNIGVVLEIV--TNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYD 128
P P ++N+ VV E + T Y +E R N QGRL G + + D
Sbjct: 126 FPSPQKPILNL-VVNEXIPWTKDGYAHLELRYNNNGSQGRLVPGXVSFKLDD 176
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 55 LTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQ 114
+ IL + ++V+ ++ ++DG W P+ P A V+ +I ++ S V V S
Sbjct: 276 MEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQPCTKIESSSVL-SKPCSVTVASEA 334
Query: 115 GRLSIGTIYLVI 126
+ + I L I
Sbjct: 335 SKKKVDVIDLTI 346
>pdb|1NBW|A Chain A, Glycerol Dehydratase Reactivase
pdb|1NBW|C Chain C, Glycerol Dehydratase Reactivase
Length = 607
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 126 IYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALR 173
I +GE+ P N L +R E+ F C R LR SP ++R
Sbjct: 502 IKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSPGGSIR 549
>pdb|2ZUY|A Chain A, Crystal Structure Of Exotype Rhamnogalacturonan Lyase Yesx
Length = 620
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 114 QGRLSIGTIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALR 173
QGR+ G YL ++ GE A V E PP K + + N R L G + LD R
Sbjct: 225 QGRILSGPEYLTVFKGETGEALTTV-EYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGER 283
>pdb|2IXA|A Chain A, A-Zyme, N-Acetylgalactosaminidase
pdb|2IXB|A Chain A, Crystal Structure Of N-Acetylgalactosaminidase In Complex
With Galnac
Length = 444
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 52 DSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEI--VTNGTYRSIEHRVI 109
D+ ++ NE L + W +TP + G V EI TNG +++ ++
Sbjct: 380 DNTFVECIKRNEAFPLDVYDLATWYSITPLSEKSIAENGAVQEIPDFTNGKWKNAKNTFA 439
Query: 110 VNS 112
+N
Sbjct: 440 IND 442
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,932,689
Number of Sequences: 62578
Number of extensions: 249173
Number of successful extensions: 682
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 19
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)