BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046508
         (932 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
           And Adp
 pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
           And Adp
 pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
           And Adp
 pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
           And Adp
          Length = 918

 Score = 31.2 bits (69), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 8/62 (12%)

Query: 88  ITPHVLNHYQ-EAVSLVKAEIPPLLTPTEVCEHEKIDFLQKKSNDAQMIKVKTELYKEIL 146
           I P V +H Q + +  V  EIP LL+P E        +L+  +  A  +  KTEL+K++ 
Sbjct: 439 IIPAVNSHIQSDLLRTVILEIPELLSPVE-------HYLKILNEQAAKVGDKTELFKDLS 491

Query: 147 DF 148
           DF
Sbjct: 492 DF 493


>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
 pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
           In The T- State
          Length = 989

 Score = 30.8 bits (68), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 445 FYAHSVDEVRALAPLLEKFRSTVGKKAYIVVSGGNFCPCEDAA 487
           F+ H   EVR+   ++E+ +S  GKK   +++ G   P  +AA
Sbjct: 186 FFLHPKKEVRSEESIVEQVKSEEGKKKIAIITSGGDAPGMNAA 228


>pdb|3QLB|A Chain A, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
           From Pseudomonas Fluorescens Bound To The
           Ferri-Enantiopyochelin
 pdb|3QLB|B Chain B, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
           From Pseudomonas Fluorescens Bound To The
           Ferri-Enantiopyochelin
          Length = 748

 Score = 29.6 bits (65), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 193 QLDSLLQQTLPFQHVWVLSFGSPNELSLKRIVNSYNDSRISFISSSYDFKYYGRFQMALQ 252
           Q+    QQ   F   WVL+ G   + S  R  N  NDS     S   D K+  R      
Sbjct: 461 QVGVYAQQQFTFDEHWVLTVGGRQDRSSARTDNRMNDSG----SKQDDEKFTYR------ 510

Query: 253 TEADLVYIVDDDMIP 267
               LVY+ D+ + P
Sbjct: 511 --TGLVYLADNGLAP 523


>pdb|2W8D|A Chain A, Distinct And Essential Morphogenic Functions For Wall- And
           Lipo-Teichoic Acids In Bacillus Subtilis
 pdb|2W8D|B Chain B, Distinct And Essential Morphogenic Functions For Wall- And
           Lipo-Teichoic Acids In Bacillus Subtilis
          Length = 436

 Score = 29.6 bits (65), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 294 RILPFRQKDFTFPSYRKFRSK----EAGLYLPDPAYDITVDKIVQVDFLSSSWFLSAELV 349
            ++PFR  DF  P Y K   K    + G  L +   D + D +V+ +   S   ++ +L+
Sbjct: 342 EVIPFRNGDFISPKYTKISGKYYDTKTGKELDESEVDKSEDSLVKKELEXSDKIINGDLL 401

Query: 350 K 350
           +
Sbjct: 402 R 402


>pdb|3MUX|A Chain A, The Crystal Structure Of A Putative
           4-Hydroxy-2-Oxoglutarate From Bacillus Anthracis To
           1.45a
 pdb|3MUX|B Chain B, The Crystal Structure Of A Putative
           4-Hydroxy-2-Oxoglutarate From Bacillus Anthracis To
           1.45a
          Length = 251

 Score = 29.6 bits (65), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 93  LNHYQE--AVSLVKAEIPPLLTPTEVCEHEKIDFLQKKSNDAQMIKVKTELYKEILDFQS 150
           L H +E  AV+   AE    L PT   + E  + + + + +A + +V   +Y  I+D ++
Sbjct: 169 LAHEEEYRAVAKACAEEGFALEPTGGIDKENFETILRIALEANVEQVIPHVYSSIIDKET 228

Query: 151 KSIGTETLNELMAMKSK 167
            +  TE + EL+A+  K
Sbjct: 229 GNTKTEDVRELLAVVKK 245


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,789,247
Number of Sequences: 62578
Number of extensions: 1150106
Number of successful extensions: 2432
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2429
Number of HSP's gapped (non-prelim): 6
length of query: 932
length of database: 14,973,337
effective HSP length: 108
effective length of query: 824
effective length of database: 8,214,913
effective search space: 6769088312
effective search space used: 6769088312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)