BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046508
         (932 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q83MS8|FTSK_TROWT DNA translocase FtsK OS=Tropheryma whipplei (strain Twist) GN=ftsK
           PE=3 SV=1
          Length = 741

 Score = 36.6 bits (83), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 3/140 (2%)

Query: 503 KIFDLTIGALSGVSNSEVPVVQ-AVFSSMKGLIKIHNPSVVITVADIDSNVKKALKMATE 561
           ++ DL + A   V  S V + Q A  S +  ++    PSV +    I +NV   L  A  
Sbjct: 522 ELADLMLVAAKDVEESIVRITQLARASGIHIVLATQRPSVNVVTGLIKANVPSRLAFAVS 581

Query: 562 TKSNGTTLVLLPRPSITKVLWMADLRSAALPNWNRMRISVNIVTQNRVHSLTRLLKSLSN 621
           +  +  + V+L RP   K++   D     +     +RI  + VT+N +  +   +KS ++
Sbjct: 582 SLVD--SRVILDRPGAEKLVGQGDGLFLPISAGKPIRIQSSWVTENEILRVVEYVKSQAH 639

Query: 622 AYYLGDEVPISFNMDSKVDE 641
             Y   EV    N+DS + +
Sbjct: 640 PDYYVLEVQNQGNIDSHIGD 659


>sp|Q83MI4|FTSK_TROW8 DNA translocase FtsK OS=Tropheryma whipplei (strain TW08/27)
           GN=ftsK PE=3 SV=1
          Length = 741

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 3/140 (2%)

Query: 503 KIFDLTIGALSGVSNSEVPVVQ-AVFSSMKGLIKIHNPSVVITVADIDSNVKKALKMATE 561
           ++ DL + A   V  S V + Q A  S +  ++    PSV +    I +NV   L  A  
Sbjct: 522 ELADLMLVAAKDVEESIVRITQLARASGIHIVLATQRPSVNVVTGLIKANVPSRLAFAVS 581

Query: 562 TKSNGTTLVLLPRPSITKVLWMADLRSAALPNWNRMRISVNIVTQNRVHSLTRLLKSLSN 621
           +  +  + V+L RP   K++   D     +     +RI  + VT+N +  +   +KS ++
Sbjct: 582 SLVD--SRVILDRPGAEKLVGQGDGLFLPISAGKPIRIQSSWVTENEILRVVEYVKSQAH 639

Query: 622 AYYLGDEVPISFNMDSKVDE 641
             Y   EV    N+DS + +
Sbjct: 640 PDYYVLEVQNQGNIDSHIGD 659


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 346,105,058
Number of Sequences: 539616
Number of extensions: 14499126
Number of successful extensions: 32242
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 32240
Number of HSP's gapped (non-prelim): 17
length of query: 932
length of database: 191,569,459
effective HSP length: 127
effective length of query: 805
effective length of database: 123,038,227
effective search space: 99045772735
effective search space used: 99045772735
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)