BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046511
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 110 AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVN 169
+ H+NP++T+A R + YI AQ +I + L V P + GG+ V +V+
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 168
Query: 170 ----TGQAFALEFLITFNLLFX--XXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGG 223
G +E +ITF L+F G +A +A+G +V + L A +G
Sbjct: 169 GNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINYTGA 227
Query: 224 SMNPVRTLGPAVAAGNYEKLWIF 246
SMNP R+ GPAV GN+E WI+
Sbjct: 228 SMNPARSFGPAVIMGNWENHWIY 250
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 110 AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVN 169
+ H+NP++T+A R + YI AQ +I + L V P + GG+ V +V+
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 129
Query: 170 ----TGQAFALEFLITFNLLFX--XXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGG 223
G +E +ITF L+F G +A +A+G +V + L A +G
Sbjct: 130 GNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINYTGA 188
Query: 224 SMNPVRTLGPAVAAGNYEKLWIF 246
SMNP R+ GPAV GN+E WI+
Sbjct: 189 SMNPARSFGPAVIMGNWENHWIY 211
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 110 AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVN 169
+ H+NP++T+A R + YI AQ +I + L V P + GG+ V +V+
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 129
Query: 170 ----TGQAFALEFLITFNLLFX--XXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGG 223
G +E +ITF L+F G +A +A+G +V + L A +G
Sbjct: 130 GNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGA 188
Query: 224 SMNPVRTLGPAVAAGNYEKLWIF 246
SMNP R+ GPAV GN+E WI+
Sbjct: 189 SMNPARSFGPAVIMGNWENHWIY 211
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 110 AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVN 169
+ H+NP++T+A R + YI AQ +I + L V P + GG+ V V+
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVH 120
Query: 170 ----TGQAFALEFLITFNLLFXXXXXXXX--XXXXGELAGIAVGATVMLNILIAGPSSGG 223
G +E +ITF L+F G +A +A+G +V + L A +G
Sbjct: 121 GNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGA 179
Query: 224 SMNPVRTLGPAVAAGNYEKLWIF 246
SMNP R+ GPAV GN+E WI+
Sbjct: 180 SMNPARSFGPAVIMGNWENHWIY 202
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 82/205 (40%), Gaps = 41/205 (20%)
Query: 70 VSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAET------------------------ 105
VSLT++ AEF+GTFIL+F V + T
Sbjct: 2 VSLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLA 61
Query: 106 ----------LIGN-AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALK-- 152
+GN + H+NP++TI +++ FP +V YI+AQ+ + SF
Sbjct: 62 FGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQC 121
Query: 153 AVFHPFMSGGVT----VPSVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGA 208
A GG+ P ++ QA E + TF L+ AGI +G
Sbjct: 122 AGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGL 181
Query: 209 TVMLNILIAGPSSGGSMNPVRTLGP 233
TV I G SG S+NP RT GP
Sbjct: 182 TVAGIITTLGNISGSSLNPARTFGP 206
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 66 PVPNVSLTRKVGAEFVGTFILIFAAT------------AGPIVNQKYSGAETLIGN-AAS 112
P P +S + + AE VGTF+L+ AG I+ +G T +GN + S
Sbjct: 137 PFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLTVAGIITTLGNISGS 196
Query: 113 HLNPSLT 119
LNP+ T
Sbjct: 197 SLNPART 203
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 110 AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFH--PFMSGGVTV-- 165
+ +HLNP++T+ ++ YI+AQ +I A+ L + P S G+
Sbjct: 73 SGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALA 132
Query: 166 PSVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGELAG---IAVGATVMLNILIAGPSSG 222
P VN+GQ +E + T L+ +L G +A+G +V L L+A +G
Sbjct: 133 PGVNSGQGLGIEIIGTLQLVLCVLATTDRRRR--DLGGSGPLAIGFSVALGHLLAIDYTG 190
Query: 223 GSMNPVRTLGPAVAAGNYEKLWIF 246
+NP R+ G +V N++ WIF
Sbjct: 191 CGINPARSFGSSVITHNFQDHWIF 214
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 110 AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGV----TV 165
+ +HLNP++T+ + YI+AQ +I A+ L + +
Sbjct: 71 SGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLA 130
Query: 166 PSVNTGQAFALEFLITFNL-LFXXXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGGS 224
VN+GQ +E + T L L G A +A+G +V L L+A +G
Sbjct: 131 DGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCG 190
Query: 225 MNPVRTLGPAVAAGNYEKLWIF 246
+NP R+ G AV N+ WIF
Sbjct: 191 INPARSFGSAVITHNFSNHWIF 212
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 110 AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTV---- 165
+ +H+NP++T AF ++ Y++AQ+ ++ + L +V P + G + +
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 166 PSVNTGQAFALEFLIT--FNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGG 223
P V+ GQA +E +T F L G +A +AVG ++ L L +G
Sbjct: 123 PGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGA 181
Query: 224 SMNPVRTLGPAVAAGNYEKLWIF 246
MNP R+ PA+ N+ W++
Sbjct: 182 GMNPARSFAPAILTRNFTNHWVY 204
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 110 AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTV---- 165
+ +H+NP++T AF ++ Y++AQ+ ++ + L +V P + G + +
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 166 PSVNTGQAFALEFLIT--FNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGG 223
P V+ GQA +E +T F L G +A +AVG ++ L L +G
Sbjct: 123 PGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGA 181
Query: 224 SMNPVRTLGPAVAAGNYEKLWIF 246
MNP R+ PA+ N+ W++
Sbjct: 182 GMNPARSFAPAILTRNFTNHWVY 204
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 110 AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMS--GGVTV-- 165
+ +H+NP++TIA ++ FP +V YI+AQ + S A P + GG+
Sbjct: 78 SGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATA 137
Query: 166 --PSVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGG 223
P + GQA E + TF L+ AG+ +G TV I G +G
Sbjct: 138 PFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGGIITTIGNITGS 197
Query: 224 SMNPVRTLGP 233
S+NP RT GP
Sbjct: 198 SLNPARTFGP 207
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 112 SHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTV----PS 167
+H+NP++T AF ++ Y++AQ+ ++ + L +V P + G + + P
Sbjct: 61 AHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPG 120
Query: 168 VNTGQAFALEFLIT--FNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGGSM 225
V+ GQA +E +T F L G +A +AVG ++ L L +G M
Sbjct: 121 VSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGM 179
Query: 226 NPVRTLGPAVAAGNYEKLWIF 246
NP R+ PA+ N+ W++
Sbjct: 180 NPARSFAPAILTRNFTNHWVY 200
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 112 SHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTV----PS 167
+H+NP++T AF ++ Y++AQ+ ++ + L +V P + G + + P
Sbjct: 59 AHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPG 118
Query: 168 VNTGQAFALEFLIT--FNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGGSM 225
V+ GQA +E +T F L G +A +AVG ++ L L +G M
Sbjct: 119 VSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGM 177
Query: 226 NPVRTLGPAVAAGNYEKLWIF 246
NP R+ PA+ N+ W++
Sbjct: 178 NPARSFAPAILTRNFTNHWVY 198
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 44/210 (20%)
Query: 71 SLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAE------TLI-------------GNAA 111
+L + AEF+GT +LIF G + K +GA ++I G +
Sbjct: 6 TLKGQCIAEFLGTGLLIFFGV-GCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSG 64
Query: 112 SHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVF----------HPFMSG 161
+HLNP++TIA F +V +I++QV+ + CA+ + ++ H + G
Sbjct: 65 AHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRG 124
Query: 162 GVTV------------PSVNTGQAFALEFLITFNL--LFXXXXXXXXXXXXGELAGIAVG 207
V P +N QAFA+E +IT L L G LA + +G
Sbjct: 125 SVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIG 184
Query: 208 ATVMLNILIAGPSSGGSMNPVRTLGPAVAA 237
+ + GP +G +MNP R GP V A
Sbjct: 185 LLIAVIGASMGPLTGTAMNPARDFGPKVFA 214
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 44/210 (20%)
Query: 71 SLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAE------TLI-------------GNAA 111
+L + AEF+GT +LIF G + K +GA ++I G +
Sbjct: 6 TLKGQCIAEFLGTGLLIFFGV-GCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSG 64
Query: 112 SHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVF----------HPFMSG 161
+HLNP++TIA F +V +I++QV+ + CA+ + ++ H + G
Sbjct: 65 AHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRG 124
Query: 162 GVTV------------PSVNTGQAFALEFLITFNL--LFXXXXXXXXXXXXGELAGIAVG 207
V P +N QAFA+E +IT L L G LA + +G
Sbjct: 125 SVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIG 184
Query: 208 ATVMLNILIAGPSSGGSMNPVRTLGPAVAA 237
+ + GP +G +MNP R GP V A
Sbjct: 185 LLIAVIGASMGPLTGFAMNPARDFGPKVFA 214
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 26/204 (12%)
Query: 67 VPNVSLTRKVGAEFVGTFILIFAA--------TAGPIVNQKYSGAETLIGNAAS------ 112
V +V+ + V AEF+ T I +F +A P + Q IG A
Sbjct: 6 VCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQALGPVS 65
Query: 113 --HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPS--- 167
H+NP++T+A ++ Y+ AQ+ +I + L V P + G +
Sbjct: 66 GGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV-APLNARGNLAVNALN 124
Query: 168 --VNTGQAFALEFLITFNLLFXXXXXXXXXXX--XGELAGIAVGATVMLNILIAGPSSGG 223
GQA +E ++TF L G A +++G +V L L+ +G
Sbjct: 125 NNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGC 183
Query: 224 SMNPVRTLGPAVAAGNYE-KLWIF 246
SMNP R+ GPAV + W+F
Sbjct: 184 SMNPARSFGPAVVMNRFSPAHWVF 207
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 71 SLTRKVGAEFVGTFILIFAATAGPIVNQKYS---GAETLIGNA----------------- 110
S R AEF+ T + ++ A I + K + G+ L+G A
Sbjct: 36 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGI 95
Query: 111 -ASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAV----FHPFMSGGVTV 165
H+NP++T R ++ Y++AQ +IC +KA ++ F G +V
Sbjct: 96 SGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSV 155
Query: 166 P-SVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGE-----LAGIAVGATVMLNILIAGP 219
N G A E + TF L++ + LA + +G V + L P
Sbjct: 156 ALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 215
Query: 220 SSGGSMNPVRTLGPAVAAGN---YEKLWIF 246
+G +NP R+ G AV + ++ WIF
Sbjct: 216 ITGTGINPARSFGAAVIFNSNKVWDDQWIF 245
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 43/214 (20%)
Query: 71 SLTRKVGAEFVGTFILIFAATAG-------PIVNQKYSGAETLIG------------NAA 111
++ RK+ AE GTF L+F + P + ++G G +
Sbjct: 3 AMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62
Query: 112 SHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTG 171
H NP++TI A FP +V Y++AQV I A+ A+ + SG + +G
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA----ALLYLIASGKTGFDAAASG 118
Query: 172 -----------------QAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNI 214
A +E +++ L G A IA+G + L
Sbjct: 119 FASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIH 177
Query: 215 LIAGPSSGGSMNPVRTLGPAVAAGNY--EKLWIF 246
LI+ P + S+NP R+ A+ G + E+LW F
Sbjct: 178 LISIPVTNCSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 72 LTRKVGAEFVGTFILIFA-------ATAGPIVNQKYSGAETLIG------------NAAS 112
+ RK+ AE GTF L+F A P + ++G G +
Sbjct: 1 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG 60
Query: 113 HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTG- 171
H NP++TI A FP +V Y++AQV I A+ A+ + SG + +G
Sbjct: 61 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA----ALLYLIASGKTGFDAAASGF 116
Query: 172 ----------------QAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNIL 215
A +E +++ L G A IA+G + L L
Sbjct: 117 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIHL 175
Query: 216 IAGPSSGGSMNPVRTLGPAVAAGNY--EKLWIF 246
I+ P + S+NP R+ A+ G + E+LW F
Sbjct: 176 ISIPVTNTSVNPARSTAVAIFQGGWALEQLWFF 208
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 72 LTRKVGAEFVGTFILIFA-------ATAGPIVNQKYSGAETLIG------------NAAS 112
+ RK+ AE GTF L+F A P + ++G G +
Sbjct: 4 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGG 63
Query: 113 HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTG- 171
H NP++TI A FP +V Y++AQV I A+ A+ + SG + +G
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA----ALLYLIASGKTGFDAAASGF 119
Query: 172 ----------------QAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNIL 215
A +E +++ L G A IA+G + L L
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIHL 178
Query: 216 IAGPSSGGSMNPVRTLGPAVAAGNY--EKLWIF 246
I+ P + S+NP R+ A+ G + E+LW F
Sbjct: 179 ISIPVTNTSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 71 SLTRKVGAEFVGTFILIFAATAGPIVNQKYS---GAETLIGNA----------------- 110
S R AEF+ T + ++ A I + K + G+ L+G A
Sbjct: 59 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGI 118
Query: 111 -ASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAV----FHPFMSGGVTV 165
H+NP++T R ++ Y++AQ +IC +KA ++ F G +V
Sbjct: 119 SGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSV 178
Query: 166 P-SVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGE-----LAGIAVGATVMLNILIAGP 219
N G A E + TF L++ + LA + +G V + L P
Sbjct: 179 ALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 238
Query: 220 SSGGSMNPVRTLGPAVAAGN---YEKLWIF 246
+G +NP R+ G AV + ++ WIF
Sbjct: 239 ITGTGINPARSFGAAVIFNSNKVWDDQWIF 268
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 71 SLTRKVGAEFVGTFILIFAATAGPIVNQKYS---GAETLIGNA----------------- 110
S R AEF+ T + ++ A I + K + G+ L+G A
Sbjct: 55 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGI 114
Query: 111 -ASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAV----FHPFMSGGVTV 165
H+NP++T R ++ Y++AQ +IC +KA ++ F G +V
Sbjct: 115 SGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSV 174
Query: 166 P-SVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGE-----LAGIAVGATVMLNILIAGP 219
N G A E + TF L++ + LA + +G V + L P
Sbjct: 175 ALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 234
Query: 220 SSGGSMNPVRTLGPAVAAGN---YEKLWIF 246
+G +NP R+ G AV + ++ WIF
Sbjct: 235 ITGTGINPARSFGAAVIFNSNKVWDDQWIF 264
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 71 SLTRKVGAEFVGTFILIFAATAGPIVNQKYS---GAETLIGNA----------------- 110
S R AEF+ T + ++ A I + K + G+ L+G A
Sbjct: 59 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGI 118
Query: 111 -ASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAV----FHPFMSGGVTV 165
H+NP++T R ++ Y++AQ +IC +KA ++ F G +V
Sbjct: 119 SGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSV 178
Query: 166 P-SVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGE-----LAGIAVGATVMLNILIAGP 219
N G A E + TF L++ + LA + +G V + L P
Sbjct: 179 ALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 238
Query: 220 SSGGSMNPVRTLGPAVAAGN---YEKLWIF 246
+G +NP R+ G AV + ++ WIF
Sbjct: 239 ITGTGINPARSFGAAVIFNSNKVWDDQWIF 268
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 72 LTRKVGAEFVGTFILIFAATAG-------PIVNQKYSGAETLIG------------NAAS 112
+ RK+ AE GTF L+F + P + ++G G +
Sbjct: 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG 63
Query: 113 HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTG- 171
H NP++TI A FP +V Y++AQV I A+ A+ + SG + +G
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA----ALLYLIASGKTGFDAAASGF 119
Query: 172 ----------------QAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNIL 215
A +E +++ L G A IA+G + L L
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIHL 178
Query: 216 IAGPSSGGSMNPVRTLGPAVAAGNY--EKLWIF 246
I+ P + S+NP R+ A+ G + E+LW F
Sbjct: 179 ISIPVTNCSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 71 SLTRKVGAEFVGTFILIFAATAGPIVNQKYS---GAETLIGNA----------------- 110
S R AEF+ T + ++ A I + K + G+ L+G A
Sbjct: 36 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGI 95
Query: 111 -ASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAV----FHPFMSGGVTV 165
H+NP++T R ++ Y++AQ +IC +KA ++ F G +V
Sbjct: 96 SGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSV 155
Query: 166 P-SVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGE-----LAGIAVGATVMLNILIAGP 219
N G A E + TF L++ + LA + +G V + L P
Sbjct: 156 ALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 215
Query: 220 SSGGSMNPVRTLGPAVAAGN---YEKLWIF 246
+G +NP R+ G AV + ++ WIF
Sbjct: 216 ITGTGINPARSFGAAVIFNSNKVWDDQWIF 245
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 43/213 (20%)
Query: 72 LTRKVGAEFVGTFILIFAATAG-------PIVNQKYSGAETLIG------------NAAS 112
+ RK+ AE GTF L+F + P + ++G G +
Sbjct: 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG 63
Query: 113 HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTG- 171
H NP++TI A FP +V Y++AQV I A+ A+ + SG + +G
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA----ALLYLIASGKTGFDAAASGF 119
Query: 172 ----------------QAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNIL 215
A +E +++ L G A IA+G L L
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLACTLIHL 178
Query: 216 IAGPSSGGSMNPVRTLGPAVAAGNY--EKLWIF 246
I+ P + S+NP R+ A+ G + E+LW F
Sbjct: 179 ISIPVTNTSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 72 LTRKVGAEFVGTFILIFA-------ATAGPIVNQKYSGAETLIG------------NAAS 112
+ RK+ AE GTF L+F A P + ++G G +
Sbjct: 4 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG 63
Query: 113 HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTG- 171
H NP++TI A FP +V Y++AQV I A+ A+ + SG + +G
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA----ALLYLIASGKTGFDAAASGF 119
Query: 172 ----------------QAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNIL 215
A +E +++ L G A IA+G + L L
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLIGL 178
Query: 216 IAGPSSGGSMNPVRTLGPAVAAGNY--EKLWIF 246
I+ P + S+NP R+ A+ G + E+LW F
Sbjct: 179 ISIPVTNFSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 47/215 (21%)
Query: 72 LTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAA-------------------- 111
+ RK+ AE GTF L+F ++ + E IG A
Sbjct: 4 MFRKLAAECFGTFWLVFGGCGSAVLAAGFP--ELGIGFAGVALAWGLTVLTMAFAVGHIS 61
Query: 112 -SHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNT 170
H NP++TI A FP +V Y++AQV I A+ A+ + SG + +
Sbjct: 62 GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAA----ALLYLIASGKTGFDAAAS 117
Query: 171 G-----------------QAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLN 213
G A +E +++ L G A IA+G + L
Sbjct: 118 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLI 176
Query: 214 ILIAGPSSGGSMNPVRTLGPAVAAGNY--EKLWIF 246
LI+ P + S+NP R+ A+ G + E+LW F
Sbjct: 177 GLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 50/202 (24%)
Query: 71 SLTRKVGAEFVGTFILIF---AATA------------------------GPIVNQKYSGA 103
S R+ EF+GTF+L+F ATA G +V+ K SGA
Sbjct: 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGA 67
Query: 104 ETLIGNAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGV 163
HLN +++I +++ F ++P Y AQ+ + + + ++H F+S
Sbjct: 68 ---------HLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSK 118
Query: 164 T---------VPSVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNI 214
PS++ AF E ++T +L G+ + + + V L I
Sbjct: 119 IPQFAWETSRNPSISLTGAFFNELILT-GILLLVILVVVDENICGKFHILKLSSVVGLII 177
Query: 215 LIAGPSSGGS----MNPVRTLG 232
L G + GG+ +NP R LG
Sbjct: 178 LCIGITFGGNTGFALNPSRDLG 199
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 33/207 (15%)
Query: 72 LTRKVGAEFVGTFILIFA-------ATAGPIVNQKYSG------------AETLIGNAAS 112
+ RK+ AEF GTF L+F A A P + ++G A + G +
Sbjct: 29 MGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGG 88
Query: 113 HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAV--------FHPFMSGGVT 164
H NP++++ FP + Y++AQV+ +I A+ AL + F S G
Sbjct: 89 HFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYG 148
Query: 165 VPS---VNTGQAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILIAGPSS 221
S + A +E ++T L G A IA+G + L LI+ P +
Sbjct: 149 EHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG-FAPIAIGLALTLIHLISIPVT 207
Query: 222 GGSMNPVRTLGPAVAAGNY--EKLWIF 246
S+NP R+ G A+ G + ++LW+F
Sbjct: 208 NTSVNPARSTGQALFVGGWALQQLWLF 234
>pdb|1RM6|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 769
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 21 GGALMSAARVDSLSYERQ---AKSGFKCLPV-TAPSSWGHTNSCSFPDIPVPNVSLTRKV 76
G + + A +D ++ E+ K ++ LP P + + + D PN ++ R+V
Sbjct: 102 GDPVAAVAAIDEVTAEKALALIKVDYEVLPAYMTPKAAMKAGAIALHD-DKPN-NILREV 159
Query: 77 GAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAASHLNPSLTIAFAALRHF----PWVQ 132
AEF G FA A I + Y+ AE + + LN +L + +R Q
Sbjct: 160 HAEF-GDVAAAFA-EADLIREKTYTFAE--VNHVHMELNATLA-EYDPVRDMLTLNTTTQ 214
Query: 133 VPAYIMAQVSASICASFALKAVFHPFMSGG 162
VP Y+ +V+A + A V PF+ GG
Sbjct: 215 VPYYVHLKVAACLQMDSARIRVIKPFLGGG 244
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 206 VGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKL-WIF 246
+G +++ LI +G +NP R+ GPAVAA ++ WI+
Sbjct: 204 IGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIY 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,502,517
Number of Sequences: 62578
Number of extensions: 258986
Number of successful extensions: 601
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 43
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)