Query 046511
Match_columns 282
No_of_seqs 245 out of 1674
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 12:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00026 aquaporin NIP; Provi 100.0 6E-65 1.3E-69 469.0 24.8 279 2-282 1-298 (298)
2 KOG0223 Aquaporin (major intri 100.0 3.3E-48 7.2E-53 347.1 19.6 202 67-269 5-229 (238)
3 PLN00184 aquaporin NIP1; Provi 100.0 1E-45 2.2E-50 341.6 20.8 214 68-281 49-288 (296)
4 PLN00182 putative aquaporin NI 100.0 1.9E-42 4.1E-47 318.0 21.3 198 69-266 38-254 (283)
5 PTZ00016 aquaglyceroporin; Pro 100.0 2E-42 4.2E-47 320.0 20.3 202 68-270 45-294 (294)
6 PRK05420 aquaporin Z; Provisio 100.0 1.1E-41 2.4E-46 305.5 20.7 195 73-268 2-230 (231)
7 COG0580 GlpF Glycerol uptake f 100.0 6.1E-42 1.3E-46 306.2 18.2 196 71-266 3-240 (241)
8 KOG0224 Aquaporin (major intri 100.0 1.8E-42 3.8E-47 313.8 14.1 203 67-270 26-279 (316)
9 PLN00027 aquaporin TIP; Provis 100.0 2.8E-41 6E-46 306.5 19.5 201 70-270 17-243 (252)
10 PF00230 MIP: Major intrinsic 100.0 8.3E-42 1.8E-46 304.6 15.5 194 68-261 3-227 (227)
11 PLN00166 aquaporin TIP2; Provi 100.0 2E-40 4.2E-45 300.4 20.5 202 69-270 14-241 (250)
12 PLN00167 aquaporin TIP5; Provi 100.0 1.1E-39 2.3E-44 296.5 21.4 201 69-270 18-244 (256)
13 PLN00183 putative aquaporin NI 100.0 1.8E-39 3.9E-44 297.2 20.4 201 70-270 42-260 (274)
14 cd00333 MIP Major intrinsic pr 100.0 3.4E-37 7.3E-42 275.9 16.8 191 74-264 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 1.9E-35 4.2E-40 262.5 16.3 184 78-261 1-216 (216)
16 PLN00026 aquaporin NIP; Provi 99.6 8.2E-16 1.8E-20 142.5 7.4 101 167-267 67-173 (298)
17 PLN00184 aquaporin NIP1; Provi 99.6 1.1E-15 2.4E-20 141.7 7.5 101 167-267 50-156 (296)
18 PLN00183 putative aquaporin NI 99.6 7.5E-15 1.6E-19 134.9 7.8 101 167-267 41-147 (274)
19 PLN00166 aquaporin TIP2; Provi 99.5 2.3E-14 5E-19 130.2 6.9 100 167-266 14-124 (250)
20 PLN00167 aquaporin TIP5; Provi 99.5 6.2E-14 1.3E-18 127.8 7.8 99 168-266 19-128 (256)
21 PLN00182 putative aquaporin NI 99.5 5.1E-14 1.1E-18 129.9 6.9 99 168-266 39-143 (283)
22 PLN00027 aquaporin TIP; Provis 99.4 1.4E-13 3.1E-18 125.2 7.5 98 169-266 18-126 (252)
23 cd00333 MIP Major intrinsic pr 99.4 7.8E-14 1.7E-18 124.9 5.4 98 172-269 1-105 (228)
24 PRK05420 aquaporin Z; Provisio 99.4 2.3E-13 5E-18 122.3 7.6 97 171-267 2-105 (231)
25 PTZ00016 aquaglyceroporin; Pro 99.4 2.5E-13 5.4E-18 126.1 6.5 99 169-267 48-152 (294)
26 TIGR00861 MIP MIP family chann 99.3 9.9E-13 2.1E-17 116.9 5.9 93 176-268 1-104 (216)
27 COG0580 GlpF Glycerol uptake f 99.2 1.7E-11 3.6E-16 110.4 6.3 104 170-273 4-116 (241)
28 KOG0224 Aquaporin (major intri 99.1 5.4E-11 1.2E-15 109.0 6.2 98 169-266 30-134 (316)
29 KOG0223 Aquaporin (major intri 99.1 1.4E-10 3E-15 104.5 6.5 102 167-268 7-114 (238)
30 PF00230 MIP: Major intrinsic 99.1 9.7E-11 2.1E-15 104.4 3.7 100 168-267 5-116 (227)
31 COG2116 FocA Formate/nitrite f 85.7 6.5 0.00014 36.3 9.3 146 121-270 95-262 (265)
32 PRK11562 nitrite transporter N 77.7 9.4 0.0002 35.3 7.3 150 117-272 85-256 (268)
33 PF04632 FUSC: Fusaric acid re 72.3 14 0.00031 37.6 7.8 126 114-270 370-495 (650)
34 PRK09713 focB putative formate 69.1 93 0.002 28.9 11.8 69 123-191 99-181 (282)
35 PRK10805 formate transporter; 69.0 67 0.0015 29.9 10.8 76 115-191 93-182 (285)
36 TIGR00790 fnt formate/nitrite 40.1 2.8E+02 0.006 24.9 10.3 76 115-190 68-157 (239)
37 COG3301 NrfD Formate-dependent 39.8 94 0.002 29.2 6.4 41 221-263 223-266 (305)
38 PHA00404 hypothetical protein 38.3 11 0.00024 24.4 0.1 27 18-44 2-28 (42)
39 PF01226 Form_Nir_trans: Forma 37.4 1.8E+02 0.0038 26.4 7.9 78 114-191 81-171 (250)
40 PRK11427 multidrug efflux syst 33.4 2.4E+02 0.0052 29.7 8.8 27 130-156 395-421 (683)
41 PF09512 ThiW: Thiamine-precur 28.4 2E+02 0.0044 24.3 6.1 59 71-155 88-148 (150)
42 PF02537 CRCB: CrcB-like prote 25.4 3.3E+02 0.0071 21.2 7.5 81 72-152 30-116 (117)
43 PF02537 CRCB: CrcB-like prote 24.6 2.7E+02 0.0059 21.7 6.1 110 141-260 5-114 (117)
44 COG0306 PitA Phosphate/sulphat 23.2 2.8E+02 0.006 26.4 6.8 23 246-268 139-161 (326)
45 PF01384 PHO4: Phosphate trans 21.0 7E+02 0.015 23.5 10.7 20 247-266 127-146 (326)
46 PF03033 Glyco_transf_28: Glyc 20.6 52 0.0011 25.9 1.1 19 110-128 8-26 (139)
No 1
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=6e-65 Score=468.97 Aligned_cols=279 Identities=77% Similarity=1.204 Sum_probs=246.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCccccccCCccc-ccccCCCCccccccCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 046511 2 AESEPGTPAVSTPATPGTPGGALMSAARVDSLSY-ERQAKSGFKCLPVTAPSSWGHTNSCSFPDIPVPNVSLTRKVGAEF 80 (282)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c~~~~~~~~w~~~~~~~~~~~~~~~~~l~r~~~aEf 80 (282)
|++++.++++|+|+||||||+|||+++|.||++| .||.+++|||++++.. .|.+++.| +.+.+.++.+++|++++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~r~~laEf 78 (298)
T PLN00026 1 MDNEEVPSAPSTPATPGTPGGPLFGGFRVDSLSYGDRKLLPSCKCFPVEAL-EWGRLPTC-FCDLPPPDVSLTRKLGAEF 78 (298)
T ss_pred CCcccCCCCCCCCCCCCCCCCcccccccccccccccccccccccccccccc-cccccCcc-cccCCCCCchHHHHHHHHH
Confidence 3455557778999999999999999999999999 4556999999999875 49999999 7788888999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCC--Cc----hhhh------------hhhhccchHHHHHHHHhcCCCcchhhHHHHHHHH
Q 046511 81 VGTFILIFAATAGPIVNQKYSG--AE----TLIG------------NAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVS 142 (282)
Q Consensus 81 lGT~ilvf~g~~s~~~~~~~~~--~~----~~~g------------~s~aH~NPAVTla~~l~g~~~~~~~~~Yi~aQ~l 142 (282)
+|||+|+|+++++.+.+.+..+ .. ..+| ++++|+|||||+++++.++++|++.+.||++|++
T Consensus 79 iGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~~~~~YiiaQil 158 (298)
T PLN00026 79 VGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWKHVPAYIAAQVS 158 (298)
T ss_pred HHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999986655433221 11 1122 2455999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCccccccchhHHHHHHHHHHHHHHHhhhheecccCccCchhhHHHHHHHHHHHHHhcCCCc
Q 046511 143 ASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSG 222 (282)
Q Consensus 143 Ga~~ga~l~~~~~~~~~~~~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~~~~~~l~iGl~V~~~~~~~g~~tG 222 (282)
||++|+++++.++++...++.+.|+++..++++.|+++||+|+++++++..|+++.+...++++|++|++.+++.+++||
T Consensus 159 GAi~aa~~~~~~~~~~~~~g~t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~~~~~~l~iGl~V~~~~l~~g~~TG 238 (298)
T PLN00026 159 ASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSTG 238 (298)
T ss_pred HHHHHHHHHHHHhcccccCceeeecccHHHHHHHHHHHHHHHHHhheeeecCCCCcCCccchHHHHHHHHHHHHhcccCc
Confidence 99999999999998866667788999999999999999999999999876676655567889999999999999999999
Q ss_pred CccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCCCCCcccccccCC
Q 046511 223 GSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPPREARSFRR 282 (282)
Q Consensus 223 ~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~~~~~~~~~~~~~ 282 (282)
++|||||||+|+++.++|+++|+||++|++|+++|+++|++++.++++.++++..+||||
T Consensus 239 a~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~~~~~~~~~~~~~~~~~ 298 (298)
T PLN00026 239 GSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREEDGDPPRPVRSFRR 298 (298)
T ss_pred cccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhCccccccChhhhhhccC
Confidence 999999999999999999999999999999999999999999999999888888899998
No 2
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-48 Score=347.07 Aligned_cols=202 Identities=41% Similarity=0.655 Sum_probs=179.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCchh-----------------h-hhhhhccchHHHHHHHHhcCC
Q 046511 67 VPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETL-----------------I-GNAASHLNPSLTIAFAALRHF 128 (282)
Q Consensus 67 ~~~~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~~~~~~~-----------------~-g~s~aH~NPAVTla~~l~g~~ 128 (282)
..+++++|++++||+||++++|+++++.+.+++..+...+ + .+++||+|||||+|+++.|++
T Consensus 5 ~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~i 84 (238)
T KOG0223|consen 5 LLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKI 84 (238)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCC
Confidence 4567899999999999999999999998887743222111 1 256679999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhccc---cCCCc--cccccchhHHHHHHHHHHHHHHHhhhheecccCccCchhh
Q 046511 129 PWVQVPAYIMAQVSASICASFALKAVFHPF---MSGGV--TVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAG 203 (282)
Q Consensus 129 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~---~~~~~--t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~~~~~~ 203 (282)
++.+++.|+++|++|+++|+++++.+.+.. ..... ..++.+.+|+++.|++.||.|++++++.++|+|+. .+.+
T Consensus 85 sl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~-~~a~ 163 (238)
T KOG0223|consen 85 SLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS-ELAP 163 (238)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc-ccHH
Confidence 999999999999999999999999999874 11122 23588999999999999999999999988898876 8999
Q ss_pred HHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCC
Q 046511 204 IAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDN 269 (282)
Q Consensus 204 l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~ 269 (282)
+.||+++.+.+++.+++||++|||||+|||+++.++|++|||||++|++|+++++++|++++.+++
T Consensus 164 l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~ 229 (238)
T KOG0223|consen 164 LAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPDE 229 (238)
T ss_pred HHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999883
No 3
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=1e-45 Score=341.57 Aligned_cols=214 Identities=43% Similarity=0.718 Sum_probs=176.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCC--Cch----hhhh------------hhhccchHHHHHHHHhcCCC
Q 046511 68 PNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSG--AET----LIGN------------AASHLNPSLTIAFAALRHFP 129 (282)
Q Consensus 68 ~~~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~~~--~~~----~~g~------------s~aH~NPAVTla~~l~g~~~ 129 (282)
.+.+++|++++||+|||+|+|+++++...+..... ... .+|+ +++|+|||||+++++.|+++
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~ 128 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFP 128 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCC
Confidence 35678999999999999999999987543322111 111 1232 34599999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccccC---C-----CccccccchhHHHHHHHHHHHHHHHhhhheecccCccCch
Q 046511 130 WVQVPAYIMAQVSASICASFALKAVFHPFMS---G-----GVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGEL 201 (282)
Q Consensus 130 ~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~---~-----~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~~~~ 201 (282)
|.+++.|+++|++||++|+++++.+++.... . ..+.|..+..++|+.|+++||+|+++++++..|++..+..
T Consensus 129 ~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~~ 208 (296)
T PLN00184 129 LKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGEL 208 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCcc
Confidence 9999999999999999999999998854221 1 1244566899999999999999999999986666655568
Q ss_pred hhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCCCCCcccccccC
Q 046511 202 AGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPPREARSFR 281 (282)
Q Consensus 202 ~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~~~~~~~~~~~~ 281 (282)
.+++||++|.+.+++.+++||++|||||||||+++.+.|+++||||++|++|+++|+++|++++.++.+..+....++|+
T Consensus 209 ~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~~~~~~~~ 288 (296)
T PLN00184 209 AGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREITKSGSFL 288 (296)
T ss_pred hHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhhccchHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999987766544433334443
No 4
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=1.9e-42 Score=318.03 Aligned_cols=198 Identities=45% Similarity=0.823 Sum_probs=167.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCC--Cc----hhhh------------hhhhccchHHHHHHHHhcCCCc
Q 046511 69 NVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSG--AE----TLIG------------NAASHLNPSLTIAFAALRHFPW 130 (282)
Q Consensus 69 ~~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~~~--~~----~~~g------------~s~aH~NPAVTla~~l~g~~~~ 130 (282)
..+++|++++||+|||+|+|+++++...+....+ .. ..+| ++++|+|||||+++++.|+++|
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~ 117 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPW 117 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCH
Confidence 3578899999999999999999987553221111 11 1122 2345999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhccccCC-CccccccchhHHHHHHHHHHHHHHHhhhheecccCccCchhhHHHHHH
Q 046511 131 VQVPAYIMAQVSASICASFALKAVFHPFMSG-GVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGAT 209 (282)
Q Consensus 131 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~-~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~~~~~~l~iGl~ 209 (282)
.+++.|+++|++|+++|+++++.+++....+ ..+.|+.+.+++++.|+++|++|+++++++..|++..+...++.+|++
T Consensus 118 ~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~~~~~~l~iGl~ 197 (283)
T PLN00182 118 YQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRAVGELAGIAVGMT 197 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheeccccCCcchhHHHHHH
Confidence 9999999999999999999999988543221 235677789999999999999999999987666555455789999999
Q ss_pred HHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhc
Q 046511 210 VMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKL 266 (282)
Q Consensus 210 V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~ 266 (282)
|++.+++.+++||++|||||+|||+++.+.|+++|+||++|++|+++|+++|+++..
T Consensus 198 V~~~~~~~g~~SGa~lNPARt~gpal~~~~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 198 IILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred HHHHHHHccccCccccChHHHHHHHHHhccccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999989999999999999999999999999975
No 5
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=2e-42 Score=320.04 Aligned_cols=202 Identities=29% Similarity=0.439 Sum_probs=165.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhcccC--CCCch----hhh------------hhhhccchHHHHHHHHhcCCC
Q 046511 68 PNVSLTRKVGAEFVGTFILIFAATAGPIVNQKY--SGAET----LIG------------NAASHLNPSLTIAFAALRHFP 129 (282)
Q Consensus 68 ~~~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~--~~~~~----~~g------------~s~aH~NPAVTla~~l~g~~~ 129 (282)
+.++++|++++||+||++|+|+++++....... ..... .+| ++++|+|||||+++++.|+++
T Consensus 45 ~~~~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~ 124 (294)
T PTZ00016 45 EYRPNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFP 124 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCC
Confidence 447889999999999999999999865432111 11111 122 344699999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccccC---C---------------CccccccchhHHHHHHHHHHHHHHHhhhhe
Q 046511 130 WVQVPAYIMAQVSASICASFALKAVFHPFMS---G---------------GVTVPSVNTGQAFALEFLITFNLLFVVTAV 191 (282)
Q Consensus 130 ~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~---~---------------~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~ 191 (282)
|.+++.|+++|++||++|++++|.++++... . ..+.|+.+..++++.|+++||+|+++++++
T Consensus 125 ~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila~ 204 (294)
T PTZ00016 125 WKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILAI 204 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998875210 0 124567788999999999999999999997
Q ss_pred ecccCcc--CchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhc----c--CCC----ceeeeeehhhHHHHHHHH
Q 046511 192 ATDTRAV--GELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAA----G--NYE----KLWIFLLAPTLGALAGAT 259 (282)
Q Consensus 192 ~~d~~~~--~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~----~--~~~----~~wvY~v~P~lGailaa~ 259 (282)
.|+|+. ....|++||++|.+++++.+++||++|||||||||+++. + .|+ ++||||++|++|+++|++
T Consensus 205 -~d~~~~~~~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aal 283 (294)
T PTZ00016 205 -TDPNNCPAFNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMF 283 (294)
T ss_pred -ccCccCCCcCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHHHHH
Confidence 555432 346799999999999999999999999999999999986 1 343 689999999999999999
Q ss_pred HHHHhhcCCCC
Q 046511 260 TYTVVKLRDNE 270 (282)
Q Consensus 260 ly~~l~~~~~~ 270 (282)
+|++++.|+.+
T Consensus 284 ly~~ll~~~~~ 294 (294)
T PTZ00016 284 LYDKFIPPLIE 294 (294)
T ss_pred HHHHHhCCCCC
Confidence 99999987643
No 6
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=1.1e-41 Score=305.54 Aligned_cols=195 Identities=32% Similarity=0.526 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccC--CC-Cc----hhhh------------hhhhccchHHHHHHHHhcCCCcchh
Q 046511 73 TRKVGAEFVGTFILIFAATAGPIVNQKY--SG-AE----TLIG------------NAASHLNPSLTIAFAALRHFPWVQV 133 (282)
Q Consensus 73 ~r~~~aEflGT~ilvf~g~~s~~~~~~~--~~-~~----~~~g------------~s~aH~NPAVTla~~l~g~~~~~~~ 133 (282)
+|++++||+||++|+|+++++.+..... .+ .. ..+| ++++|+|||||+++++.|+++|.++
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 6999999999999999999976442211 11 11 1223 2345999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccC---C---------Ccccc-ccchhHHHHHHHHHHHHHHHhhhheecccCccCc
Q 046511 134 PAYIMAQVSASICASFALKAVFHPFMS---G---------GVTVP-SVNTGQAFALEFLITFNLLFVVTAVATDTRAVGE 200 (282)
Q Consensus 134 ~~Yi~aQ~lGa~~ga~l~~~~~~~~~~---~---------~~t~p-~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~~~ 200 (282)
+.|+++|++||++|++++|.++++... . ..+.| ..+..++++.|+++|++|+++++.. .|+|+...
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~-~~~~~~~~ 160 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGA-TDKRAPAG 160 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCc
Confidence 999999999999999999988754211 0 01233 4578999999999999999999987 56665556
Q ss_pred hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCC--CceeeeeehhhHHHHHHHHHHHHhhcCC
Q 046511 201 LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNY--EKLWIFLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 201 ~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~--~~~wvY~v~P~lGailaa~ly~~l~~~~ 268 (282)
..|+.||+.+.+.+++.+++||++|||||||||+++.++| +++|+||++|++|+++++++|++++..|
T Consensus 161 ~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 161 FAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred chHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 7899999999999999999999999999999999998766 5899999999999999999999987544
No 7
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-42 Score=306.20 Aligned_cols=196 Identities=35% Similarity=0.541 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcc--c--CCC-Cch----hh------------hhhhhccchHHHHHHHHhcCCC
Q 046511 71 SLTRKVGAEFVGTFILIFAATAGPIVNQ--K--YSG-AET----LI------------GNAASHLNPSLTIAFAALRHFP 129 (282)
Q Consensus 71 ~l~r~~~aEflGT~ilvf~g~~s~~~~~--~--~~~-~~~----~~------------g~s~aH~NPAVTla~~l~g~~~ 129 (282)
++.|++++||+||++|+++|+++..... + ..+ ... .+ +++++|+|||||+++++.|+++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 5678999999999999999999764332 1 111 111 12 2345699999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccccCC-----------Cccccc-cchhHHHHHHHHHHHHHHHhhhheecccCc
Q 046511 130 WVQVPAYIMAQVSASICASFALKAVFHPFMSG-----------GVTVPS-VNTGQAFALEFLITFNLLFVVTAVATDTRA 197 (282)
Q Consensus 130 ~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~-----------~~t~p~-~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~ 197 (282)
|++++.||++|++||++|+.++|.++++.... .+|.|. .+..++|+.|+++||+|+++++++.+|++.
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~ 162 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA 162 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 99999999999999999999999998763211 135663 478999999999999999999998666655
Q ss_pred cCchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc---------CCCceeeeeehhhHHHHHHHHHHHHhhc
Q 046511 198 VGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG---------NYEKLWIFLLAPTLGALAGATTYTVVKL 266 (282)
Q Consensus 198 ~~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~---------~~~~~wvY~v~P~lGailaa~ly~~l~~ 266 (282)
+..+.|+.||+.|+..+++.++.||.++||||||||+++.. +..|+|+||++|++|+++|+++|+.++.
T Consensus 163 ~~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 163 NAGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred cccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 33599999999999999999999999999999999999532 2358999999999999999999998764
No 8
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-42 Score=313.79 Aligned_cols=203 Identities=25% Similarity=0.427 Sum_probs=168.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhhhhhcc---cCCCCch----------hh------hhhhhccchHHHHHHHHhcC
Q 046511 67 VPNVSLTRKVGAEFVGTFILIFAATAGPIVNQ---KYSGAET----------LI------GNAASHLNPSLTIAFAALRH 127 (282)
Q Consensus 67 ~~~~~l~r~~~aEflGT~ilvf~g~~s~~~~~---~~~~~~~----------~~------g~s~aH~NPAVTla~~l~g~ 127 (282)
+.++++.|+++|||+||++|+++|+++..... ...+... .+ ++|+||+|||||+++++.||
T Consensus 26 ~i~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~ 105 (316)
T KOG0224|consen 26 HIRNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGR 105 (316)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcC
Confidence 44678999999999999999999998754221 1222211 11 23566999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhcccc---CCC--------------cccc--ccchhHHHHHHHHHHHHHHHhh
Q 046511 128 FPWVQVPAYIMAQVSASICASFALKAVFHPFM---SGG--------------VTVP--SVNTGQAFALEFLITFNLLFVV 188 (282)
Q Consensus 128 ~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~---~~~--------------~t~p--~~s~~~~~~~E~i~Tf~Lv~~v 188 (282)
++|+|+++|+++|++||++|++.+|.+|++.+ +++ +|+| +++.+++|+.|+++|.+|+..+
T Consensus 106 ~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~l 185 (316)
T KOG0224|consen 106 LPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLCL 185 (316)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhhe
Confidence 99999999999999999999999999998642 221 3555 7899999999999999999999
Q ss_pred hheecccCcc--CchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-----------CCCceeeeeehhhHHHH
Q 046511 189 TAVATDTRAV--GELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-----------NYEKLWIFLLAPTLGAL 255 (282)
Q Consensus 189 ~~~~~d~~~~--~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-----------~~~~~wvY~v~P~lGai 255 (282)
+++ +|+|+. ..+.|+.+|+.|+++..+.+.++|..+|||||||||++.. +..++|+.|++|++|++
T Consensus 186 ~aI-~D~rN~~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai 264 (316)
T KOG0224|consen 186 FAI-TDKRNPIPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAI 264 (316)
T ss_pred eEE-ecCCCCCCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhh
Confidence 998 787763 4578999999999999999999999999999999999831 12578999999999999
Q ss_pred HHHHHHHHhhcCCCC
Q 046511 256 AGATTYTVVKLRDNE 270 (282)
Q Consensus 256 laa~ly~~l~~~~~~ 270 (282)
+++++|++++..+.+
T Consensus 265 ~G~~iY~~~Ig~h~~ 279 (316)
T KOG0224|consen 265 LGGWIYDFFIGFHIP 279 (316)
T ss_pred hhhhhheeeeeccCC
Confidence 999999998654433
No 9
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=2.8e-41 Score=306.53 Aligned_cols=201 Identities=26% Similarity=0.384 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhcc----cC---CCCc----hhhh------------hhhhccchHHHHHHHHhc
Q 046511 70 VSLTRKVGAEFVGTFILIFAATAGPIVNQ----KY---SGAE----TLIG------------NAASHLNPSLTIAFAALR 126 (282)
Q Consensus 70 ~~l~r~~~aEflGT~ilvf~g~~s~~~~~----~~---~~~~----~~~g------------~s~aH~NPAVTla~~l~g 126 (282)
++++|++++||+||++|+++++++.+... .. .... ..+| ++++|+|||+|++.++.|
T Consensus 17 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g 96 (252)
T PLN00027 17 PDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGG 96 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhC
Confidence 46889999999999999999998754211 11 1111 1122 234599999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhccccCC-CccccccchhHHHHHHHHHHHHHHHhhhheecccCcc--Cchhh
Q 046511 127 HFPWVQVPAYIMAQVSASICASFALKAVFHPFMSG-GVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAV--GELAG 203 (282)
Q Consensus 127 ~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~-~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~--~~~~~ 203 (282)
+++|.+.+.|+++|++|+++|+++++.+.+....+ ..+.|+++..++++.|+++||+|+++++.++.|+++. +...+
T Consensus 97 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~~p 176 (252)
T PLN00027 97 NITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAP 176 (252)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHHHhccccccCCccchHH
Confidence 99999999999999999999999998876543211 2345678999999999999999999999876665542 34789
Q ss_pred HHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511 204 IAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNE 270 (282)
Q Consensus 204 l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~ 270 (282)
+.+|+.+...+++.+++||++|||||||||+++.++|+++||||++|++|+++++++|++++.+++.
T Consensus 177 ~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~~ 243 (252)
T PLN00027 177 IAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGSTT 243 (252)
T ss_pred HHHHHHHHHHHHhcccccccccCcchhHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999876443
No 10
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=8.3e-42 Score=304.56 Aligned_cols=194 Identities=36% Similarity=0.564 Sum_probs=161.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhc-ccCCC-------Cchh----h------------hhhhhccchHHHHHHH
Q 046511 68 PNVSLTRKVGAEFVGTFILIFAATAGPIVN-QKYSG-------AETL----I------------GNAASHLNPSLTIAFA 123 (282)
Q Consensus 68 ~~~~l~r~~~aEflGT~ilvf~g~~s~~~~-~~~~~-------~~~~----~------------g~s~aH~NPAVTla~~ 123 (282)
++.+++|++++||+||++++|+++++.+.. ..... .... + .++++|+|||||++++
T Consensus 3 ~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~ 82 (227)
T PF00230_consen 3 KSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFA 82 (227)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhhee
Confidence 456899999999999999999999865422 21111 1111 1 2345699999999999
Q ss_pred HhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhccc---cCCCcc--ccccchhHHHHHHHHHHHHHHHhhhheecccCcc
Q 046511 124 ALRHFPWVQVPAYIMAQVSASICASFALKAVFHPF---MSGGVT--VPSVNTGQAFALEFLITFNLLFVVTAVATDTRAV 198 (282)
Q Consensus 124 l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~---~~~~~t--~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~ 198 (282)
+.|+++|++++.|+++|++|+++|+++++.++++. .....+ .++.+..++++.|+++|++|+++++.+..|++..
T Consensus 83 l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~~ 162 (227)
T PF00230_consen 83 LTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKRKF 162 (227)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSSS
T ss_pred eeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhccccccc
Confidence 99999999999999999999999999999999874 122232 3478999999999999999999999986555443
Q ss_pred --CchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHH
Q 046511 199 --GELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTY 261 (282)
Q Consensus 199 --~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly 261 (282)
+.+.|+.||+++.+..+..++.||++|||||+|+|+++.+.|+++||||++|++|+++|+++|
T Consensus 163 ~~~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 163 PLGPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGIWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp TSSGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeEEEEEeecccccccccccccCchhhcCceeecccCCeEEEEEehHHHHHHHHHhhC
Confidence 246899999999999999999999999999999999999999999999999999999999988
No 11
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=2e-40 Score=300.44 Aligned_cols=202 Identities=30% Similarity=0.457 Sum_probs=166.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhc--ccC-----CCCc----hhhh------------hhhhccchHHHHHHHHh
Q 046511 69 NVSLTRKVGAEFVGTFILIFAATAGPIVN--QKY-----SGAE----TLIG------------NAASHLNPSLTIAFAAL 125 (282)
Q Consensus 69 ~~~l~r~~~aEflGT~ilvf~g~~s~~~~--~~~-----~~~~----~~~g------------~s~aH~NPAVTla~~l~ 125 (282)
+.+.+|++++||+|||+|+|+++++.+.. ... .... ..+| ++++|+|||+|++.++.
T Consensus 14 ~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~ 93 (250)
T PLN00166 14 SVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG 93 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh
Confidence 35778999999999999999999975431 110 1111 1122 23459999999999999
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHhhccccCC-CccccccchhHHHHHHHHHHHHHHHhhhheecccCcc--Cchh
Q 046511 126 RHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSG-GVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAV--GELA 202 (282)
Q Consensus 126 g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~-~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~--~~~~ 202 (282)
|+++|.+.+.|+++|++|+++|+.+++.++++.... ....++.+..++++.|+++||+|+++++.++.|+|+. +...
T Consensus 94 g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~~~~~~~ 173 (250)
T PLN00166 94 GNITIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIA 173 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999999999999999999999887642211 1123467899999999999999999999876665532 3578
Q ss_pred hHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511 203 GIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNE 270 (282)
Q Consensus 203 ~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~ 270 (282)
|+.||+++++.+++.+++||++|||||+|||+++.++|+++||||++|++|+++++++|+.++.+..+
T Consensus 174 p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~~~ 241 (250)
T PLN00166 174 PIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYA 241 (250)
T ss_pred hHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999988654444
No 12
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=1.1e-39 Score=296.51 Aligned_cols=201 Identities=29% Similarity=0.410 Sum_probs=165.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhccc----C--CC-Cc----hhhh------------hhhhccchHHHHHHHHh
Q 046511 69 NVSLTRKVGAEFVGTFILIFAATAGPIVNQK----Y--SG-AE----TLIG------------NAASHLNPSLTIAFAAL 125 (282)
Q Consensus 69 ~~~l~r~~~aEflGT~ilvf~g~~s~~~~~~----~--~~-~~----~~~g------------~s~aH~NPAVTla~~l~ 125 (282)
+.+++|++++||+|||+|+|+++++...... . .+ .. ..+| ++++|+|||||++.++.
T Consensus 18 ~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~ 97 (256)
T PLN00167 18 TRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG 97 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh
Confidence 4578999999999999999999987653211 0 01 11 1122 34469999999999999
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHhhccccCCCc-cccccchhHHHHHHHHHHHHHHHhhhheecccCc--cCchh
Q 046511 126 RHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGV-TVPSVNTGQAFALEFLITFNLLFVVTAVATDTRA--VGELA 202 (282)
Q Consensus 126 g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~-t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~--~~~~~ 202 (282)
|+++|.+.+.|+++|++|+++|+++++.+++....... ..++.+.+++++.|+++|++|+++++.+ .|+++ .+...
T Consensus 98 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~-~~~~~~~~~~~~ 176 (256)
T PLN00167 98 GHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVPTYKIAEEMTGFGASVLEGVLTFGLVYTVYAA-GDPRRGLLGAIG 176 (256)
T ss_pred CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHHHh-ccccccCCCCcc
Confidence 99999999999999999999999999988755321111 1235677899999999999999999987 45443 23467
Q ss_pred hHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511 203 GIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNE 270 (282)
Q Consensus 203 ~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~ 270 (282)
|+.||++|.+..++.+++||++|||||||||+++.+.|+++|+||++|++|+++++++|++++.|+.+
T Consensus 177 pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~~ 244 (256)
T PLN00167 177 PLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQD 244 (256)
T ss_pred hHHHHHHHHHHHHhccCCCCcccCcccchHHHHhccCccCcEEEeHHHHHHHHHHHHHHHHHhCCCcC
Confidence 99999999999999999999999999999999999899999999999999999999999999876544
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=1.8e-39 Score=297.20 Aligned_cols=201 Identities=39% Similarity=0.703 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC--c----hhhh------------hhhhccchHHHHHHHHhcCCCcc
Q 046511 70 VSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGA--E----TLIG------------NAASHLNPSLTIAFAALRHFPWV 131 (282)
Q Consensus 70 ~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~~~~--~----~~~g------------~s~aH~NPAVTla~~l~g~~~~~ 131 (282)
.+.+|++++||+|||+|+|++++.....+...+. . ..+| ++++|+|||||+++++.|+++|.
T Consensus 42 ~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~~ 121 (274)
T PLN00183 42 LNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPWS 121 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCHH
Confidence 4678999999999999999999865433221111 1 1122 23459999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccCCCccccccchhHHHHHHHHHHHHHHHhhhheecccCccCchhhHHHHHHHH
Q 046511 132 QVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVM 211 (282)
Q Consensus 132 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~~~~~~l~iGl~V~ 211 (282)
+.++|+++|++|+++|+++++.++........+.|..+..++++.|+++|++|+++++.+..++++.+...++.+|+.++
T Consensus 122 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~~~~~~~l~iGl~v~ 201 (274)
T PLN00183 122 KVPLYITAQTVGSVLATYVGVSVYGVKADLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQSLGHLSGFVIGIAIG 201 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHhhheeeccccCCCCceehHHHHHHH
Confidence 99999999999999999999988865333334567777899999999999999999998755444445567899999999
Q ss_pred HHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511 212 LNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNE 270 (282)
Q Consensus 212 ~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~ 270 (282)
+.+++.+++||++|||||+|+|++++.+|+++|+||++|++|+++++++|++++.+...
T Consensus 202 ~~v~~~g~~TG~~~NPArtlgpai~~~~~~~~wvy~vapilGailaa~l~~~l~~~~~~ 260 (274)
T PLN00183 202 LAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQP 260 (274)
T ss_pred HHHHhccCCCCCEeCHHHHHHHHHhCCChhheehHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999899999999999999999999999999876554
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=3.4e-37 Score=275.87 Aligned_cols=191 Identities=37% Similarity=0.611 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCC---CCch----hhhh------------hhhccchHHHHHHHHhcCCCcchhh
Q 046511 74 RKVGAEFVGTFILIFAATAGPIVNQKYS---GAET----LIGN------------AASHLNPSLTIAFAALRHFPWVQVP 134 (282)
Q Consensus 74 r~~~aEflGT~ilvf~g~~s~~~~~~~~---~~~~----~~g~------------s~aH~NPAVTla~~l~g~~~~~~~~ 134 (282)
|++++||+||++|+++++++........ .... .+|+ +++|+|||+|++.++.|+++|.+.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 6789999999999999998765433211 1111 1222 3459999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccC----CC-------cccc--ccchhHHHHHHHHHHHHHHHhhhheecccCc--cC
Q 046511 135 AYIMAQVSASICASFALKAVFHPFMS----GG-------VTVP--SVNTGQAFALEFLITFNLLFVVTAVATDTRA--VG 199 (282)
Q Consensus 135 ~Yi~aQ~lGa~~ga~l~~~~~~~~~~----~~-------~t~p--~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~--~~ 199 (282)
.|+++|++|+++|+.+++.++++... .. .+.| +.+..++++.|+++|++|+++++.+..+++. ..
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~~~~ 160 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPG 160 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccCCCC
Confidence 99999999999999999998866321 11 1333 5689999999999999999999997544332 34
Q ss_pred chhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccC---CCceeeeeehhhHHHHHHHHHHHHh
Q 046511 200 ELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGN---YEKLWIFLLAPTLGALAGATTYTVV 264 (282)
Q Consensus 200 ~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~---~~~~wvY~v~P~lGailaa~ly~~l 264 (282)
...++.+|+++.+.+++.+++||+++||||||+|+++.+. |+++|+||++|++|+++|+++|+++
T Consensus 161 ~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 161 GLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred CcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999999875 9999999999999999999999874
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=1.9e-35 Score=262.47 Aligned_cols=184 Identities=36% Similarity=0.613 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHhhhhhhcc--c---CCC--Cch----hh------------hhhhhccchHHHHHHHHhcCCCcchhh
Q 046511 78 AEFVGTFILIFAATAGPIVNQ--K---YSG--AET----LI------------GNAASHLNPSLTIAFAALRHFPWVQVP 134 (282)
Q Consensus 78 aEflGT~ilvf~g~~s~~~~~--~---~~~--~~~----~~------------g~s~aH~NPAVTla~~l~g~~~~~~~~ 134 (282)
+||+||++|+++++++..... . ..+ ... .+ +++++|+|||||++.++.|+++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 599999999999999765421 1 111 111 11 234569999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCC--C-cc--ccccchhHHHHHHHHHHHHHHHhhhheecccCc--cCchhhHHHH
Q 046511 135 AYIMAQVSASICASFALKAVFHPFMSG--G-VT--VPSVNTGQAFALEFLITFNLLFVVTAVATDTRA--VGELAGIAVG 207 (282)
Q Consensus 135 ~Yi~aQ~lGa~~ga~l~~~~~~~~~~~--~-~t--~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~--~~~~~~l~iG 207 (282)
.|+++|++|+++|+.+++.++++.... . .+ .++.+..++++.|+++|++|+++++....+++. .....++.+|
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~iG 160 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPRGGFAPLAIG 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCCCccHHHHHH
Confidence 999999999999999999988764321 1 11 235789999999999999999999987443222 1236899999
Q ss_pred HHHHHHHHHhcCCCcCccChhhhHHHHHhcc--CCCceeeeeehhhHHHHHHHHHH
Q 046511 208 ATVMLNILIAGPSSGGSMNPVRTLGPAVAAG--NYEKLWIFLLAPTLGALAGATTY 261 (282)
Q Consensus 208 l~V~~~~~~~g~~tG~~lNPAr~lgpal~~~--~~~~~wvY~v~P~lGailaa~ly 261 (282)
+.+++.+++.+++||+++||||+|+|+++++ +|+++|+||++|++|+++++++|
T Consensus 161 ~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 161 LLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred HHHHHHHHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987 89999999999999999999876
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=99.61 E-value=8.2e-16 Score=142.53 Aligned_cols=101 Identities=24% Similarity=0.285 Sum_probs=85.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhheeccc-Ccc--Cch--hhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CC
Q 046511 167 SVNTGQAFALEFLITFNLLFVVTAVATDT-RAV--GEL--AGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NY 240 (282)
Q Consensus 167 ~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~-~~~--~~~--~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~ 240 (282)
+.+.++.++.|+++||+|++++++.+..+ +.. ... .++.+|++|++.+++.+++||++|||||++++++..+ .|
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~ 146 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPW 146 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcH
Confidence 56778999999999999999998642221 111 122 3579999999999999999999999999999999876 78
Q ss_pred CceeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 241 EKLWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 241 ~~~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
.+.|+||++|++|+++|+++++.++.+
T Consensus 147 ~~~~~YiiaQilGAi~aa~~~~~~~~~ 173 (298)
T PLN00026 147 KHVPAYIAAQVSASICASFALKGVFHP 173 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999998865
No 17
>PLN00184 aquaporin NIP1; Provisional
Probab=99.61 E-value=1.1e-15 Score=141.72 Aligned_cols=101 Identities=26% Similarity=0.281 Sum_probs=84.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhheec-cc-Cc-cCch--hhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CC
Q 046511 167 SVNTGQAFALEFLITFNLLFVVTAVAT-DT-RA-VGEL--AGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NY 240 (282)
Q Consensus 167 ~~s~~~~~~~E~i~Tf~Lv~~v~~~~~-d~-~~-~~~~--~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~ 240 (282)
+.+..+.++.|+++||+|++++++... +. +. .... .++.+|++|++.+++++++||+++||||+|++++.++ +|
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~ 129 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPL 129 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCH
Confidence 456789999999999999999887532 11 11 1123 3566699999999999999999999999999999887 78
Q ss_pred CceeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 241 EKLWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 241 ~~~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
...|+||++|++|+++|+++++.++..
T Consensus 130 ~~~~~YiiaQllGA~lga~~~~~l~~~ 156 (296)
T PLN00184 130 KQVPAYVISQVIGSTLAAATLRLLFGL 156 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998854
No 18
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.55 E-value=7.5e-15 Score=134.90 Aligned_cols=101 Identities=24% Similarity=0.305 Sum_probs=86.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhheecccCcc---Cch--hhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CC
Q 046511 167 SVNTGQAFALEFLITFNLLFVVTAVATDTRAV---GEL--AGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NY 240 (282)
Q Consensus 167 ~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~---~~~--~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~ 240 (282)
+.+.++.++.|+++||+++++++.+..+++.. ..+ .++.+|++|++.+++.+++||+++||||+|++++..+ +|
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~ 120 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPW 120 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCH
Confidence 56788999999999999999988764433221 122 4678999999999999999999999999999999976 78
Q ss_pred CceeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 241 EKLWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 241 ~~~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
...|+||++|++|+++|+++++.++..
T Consensus 121 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 121 SKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999988754
No 19
>PLN00166 aquaporin TIP2; Provisional
Probab=99.51 E-value=2.3e-14 Score=130.20 Aligned_cols=100 Identities=25% Similarity=0.357 Sum_probs=83.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhheecc--cC---c---cCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHh
Q 046511 167 SVNTGQAFALEFLITFNLLFVVTAVATD--TR---A---VGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVA 236 (282)
Q Consensus 167 ~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d--~~---~---~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~ 236 (282)
+.+..++++.|+++||+|+++.+....+ +. + ... ..++.+|+.|++.+++++++||+++||||++++++.
T Consensus 14 ~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~ 93 (250)
T PLN00166 14 SVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG 93 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh
Confidence 3567789999999999999998886432 11 1 111 256779999999999999999999999999999998
Q ss_pred cc-CCCceeeeeehhhHHHHHHHHHHHHhhc
Q 046511 237 AG-NYEKLWIFLLAPTLGALAGATTYTVVKL 266 (282)
Q Consensus 237 ~~-~~~~~wvY~v~P~lGailaa~ly~~l~~ 266 (282)
.+ +|...|+||++|++|+++|+.+++.++.
T Consensus 94 g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~ 124 (250)
T PLN00166 94 GNITIITGFFYWIAQCLGSIVACLLLVFVTN 124 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 54 5888999999999999999999998864
No 20
>PLN00167 aquaporin TIP5; Provisional
Probab=99.48 E-value=6.2e-14 Score=127.78 Aligned_cols=99 Identities=23% Similarity=0.339 Sum_probs=84.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhhheecccCc-----c-----CchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhc
Q 046511 168 VNTGQAFALEFLITFNLLFVVTAVATDTRA-----V-----GELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAA 237 (282)
Q Consensus 168 ~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~-----~-----~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~ 237 (282)
-+.++.++.|+++||+|+++.+....+.+. . ....++.+|++|++.+++.+++||+++|||+++++++.+
T Consensus 19 ~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~g 98 (256)
T PLN00167 19 RNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVGG 98 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHhC
Confidence 356789999999999999998876432211 0 114689999999999999999999999999999999986
Q ss_pred c-CCCceeeeeehhhHHHHHHHHHHHHhhc
Q 046511 238 G-NYEKLWIFLLAPTLGALAGATTYTVVKL 266 (282)
Q Consensus 238 ~-~~~~~wvY~v~P~lGailaa~ly~~l~~ 266 (282)
+ .|...|+||++|++|+++|+++++.++.
T Consensus 99 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 128 (256)
T PLN00167 99 HISVPTAMFYWISQMLASVMACLFLKVTTV 128 (256)
T ss_pred CCcHhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 5 5889999999999999999999988754
No 21
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.48 E-value=5.1e-14 Score=129.93 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=83.4
Q ss_pred cchhHHHHHHHHHHHHHHHhhhheecccCc---cCch--hhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCC
Q 046511 168 VNTGQAFALEFLITFNLLFVVTAVATDTRA---VGEL--AGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYE 241 (282)
Q Consensus 168 ~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~---~~~~--~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~ 241 (282)
.+..+.++.|+++||+|+++.+......+. .... ..+++|+.|++.+++.+++||+++|||++++.++..+ +|.
T Consensus 39 ~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~~ 118 (283)
T PLN00182 39 VCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWY 118 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCHH
Confidence 456789999999999999998875332211 1122 3568899999999999999999999999999999987 799
Q ss_pred ceeeeeehhhHHHHHHHHHHHHhhc
Q 046511 242 KLWIFLLAPTLGALAGATTYTVVKL 266 (282)
Q Consensus 242 ~~wvY~v~P~lGailaa~ly~~l~~ 266 (282)
..|+||++|++|+++|+++++.++.
T Consensus 119 ~~~~Yi~aQ~lGa~~ga~~~~~~~~ 143 (283)
T PLN00182 119 QVPLYIGAQLTGSLLASLTLRLMFN 143 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988874
No 22
>PLN00027 aquaporin TIP; Provisional
Probab=99.45 E-value=1.4e-13 Score=125.22 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=81.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhheec------ccCc--cCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVAT------DTRA--VGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG 238 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~------d~~~--~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~ 238 (282)
...+.++.|+++||+|+++.+.... ++++ ... ..++.+|+.|++.+++.+++||+++||||++++.+..+
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g~ 97 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGN 97 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhCC
Confidence 4578899999999999999886521 1111 112 46899999999999999999999999999999998765
Q ss_pred -CCCceeeeeehhhHHHHHHHHHHHHhhc
Q 046511 239 -NYEKLWIFLLAPTLGALAGATTYTVVKL 266 (282)
Q Consensus 239 -~~~~~wvY~v~P~lGailaa~ly~~l~~ 266 (282)
.|...|+||++|++|+++|+++++++..
T Consensus 98 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 98 ITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999987753
No 23
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.45 E-value=7.8e-14 Score=124.93 Aligned_cols=98 Identities=27% Similarity=0.349 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHhhhheecccCcc----C--chhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCCcee
Q 046511 172 QAFALEFLITFNLLFVVTAVATDTRAV----G--ELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYEKLW 244 (282)
Q Consensus 172 ~~~~~E~i~Tf~Lv~~v~~~~~d~~~~----~--~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~~~w 244 (282)
|.++.|+++||+|+++.+....+.+.. . ...++.+|+.+.+.+++.+++||+++|||+++++.+..+ +|...|
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 357899999999999988865443311 1 245789999999999999999999999999999999976 689999
Q ss_pred eeeehhhHHHHHHHHHHHHhhcCCC
Q 046511 245 IFLLAPTLGALAGATTYTVVKLRDN 269 (282)
Q Consensus 245 vY~v~P~lGailaa~ly~~l~~~~~ 269 (282)
+||++|++|+++|+.+++.++.++.
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~~~ 105 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYGLY 105 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999988876543
No 24
>PRK05420 aquaporin Z; Provisional
Probab=99.43 E-value=2.3e-13 Score=122.35 Aligned_cols=97 Identities=25% Similarity=0.299 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHhhhheecc----cCccCch--hhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCCce
Q 046511 171 GQAFALEFLITFNLLFVVTAVATD----TRAVGEL--AGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYEKL 243 (282)
Q Consensus 171 ~~~~~~E~i~Tf~Lv~~v~~~~~d----~~~~~~~--~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~~~ 243 (282)
.+.++.|+++|++|+++.+..... ++..... .++.+|+++.+.+++.+++||+++|||+++++.+... +|...
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 578999999999999986664211 1111122 3789999999999999999999999999999999965 68899
Q ss_pred eeeeehhhHHHHHHHHHHHHhhcC
Q 046511 244 WIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 244 wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
|+||++|++|+++|+++.+.++..
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999777766643
No 25
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.41 E-value=2.5e-13 Score=126.12 Aligned_cols=99 Identities=33% Similarity=0.451 Sum_probs=83.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhheecccCc---cCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCCc
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVATDTRA---VGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYEK 242 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~---~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~~ 242 (282)
+..+.++.|+++||+|+++.++...+... ... ..++.+|+++.+.+++.+.+||+++|||+++++++.++ +|..
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~ 127 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKK 127 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHHH
Confidence 45689999999999999988775322111 111 35678999999999999999999999999999999987 7999
Q ss_pred eeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 243 LWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 243 ~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
.|+||++|++|+++|+++...++.+
T Consensus 128 ~~~YiiaQ~lGa~~ga~ll~~~~~~ 152 (294)
T PTZ00016 128 LPGYFVAQLLGAFVGAACVYGLYYG 152 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999988877654
No 26
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.35 E-value=9.9e-13 Score=116.90 Aligned_cols=93 Identities=26% Similarity=0.300 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhhheeccc--C----cc----CchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCCcee
Q 046511 176 LEFLITFNLLFVVTAVATDT--R----AV----GELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYEKLW 244 (282)
Q Consensus 176 ~E~i~Tf~Lv~~v~~~~~d~--~----~~----~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~~~w 244 (282)
.|+++||+|+++.+....+. + .. ....++.+|+.+.+.+++.+++||+++|||+++++.+.++ +|...|
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 49999999999988865441 1 11 1136889999999999999999999999999999999987 799999
Q ss_pred eeeehhhHHHHHHHHHHHHhhcCC
Q 046511 245 IFLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 245 vY~v~P~lGailaa~ly~~l~~~~ 268 (282)
+||++|++|+++++++++.++.++
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~ 104 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGL 104 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999887654
No 27
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.7e-11 Score=110.36 Aligned_cols=104 Identities=26% Similarity=0.294 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhee---cccC----c-cCchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CC
Q 046511 170 TGQAFALEFLITFNLLFVVTAVA---TDTR----A-VGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NY 240 (282)
Q Consensus 170 ~~~~~~~E~i~Tf~Lv~~v~~~~---~d~~----~-~~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~ 240 (282)
..+-++.|+++|++|++...... .-++ . ......+..|+.|.+.+++.+++||+++|||.+++.++... +|
T Consensus 4 ~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp~ 83 (241)
T COG0580 4 LTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFPW 83 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCCH
Confidence 45567999999999999754432 1111 1 11236789999999999999999999999999999999986 68
Q ss_pred CceeeeeehhhHHHHHHHHHHHHhhcCCCCCCC
Q 046511 241 EKLWIFLLAPTLGALAGATTYTVVKLRDNETDP 273 (282)
Q Consensus 241 ~~~wvY~v~P~lGailaa~ly~~l~~~~~~~~~ 273 (282)
+....||++|++|+++|+.+...++.++..+.+
T Consensus 84 ~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~ 116 (241)
T COG0580 84 RKVLPYIVAQVLGAFAGAALLYLLYYGKILETE 116 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 999999999999999999888888877655443
No 28
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.15 E-value=5.4e-11 Score=109.00 Aligned_cols=98 Identities=28% Similarity=0.401 Sum_probs=79.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhheec----ccCccCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCC
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVAT----DTRAVGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYE 241 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~----d~~~~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~ 241 (282)
...+.+++||++|++|++.-+++.. .+...+. ...+.+|+.+++.+++++.+||+++|||.+|+..++++ .|.
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~ 109 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPWK 109 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCChh
Confidence 4778899999999999997555421 1111222 34589999999999999999999999999999999987 699
Q ss_pred ceeeeeehhhHHHHHHHHHHHHhhc
Q 046511 242 KLWIFLLAPTLGALAGATTYTVVKL 266 (282)
Q Consensus 242 ~~wvY~v~P~lGailaa~ly~~l~~ 266 (282)
.+.+|.++|++||.+|+.....+|.
T Consensus 110 k~p~Y~~aQ~iGAF~gaa~~y~~y~ 134 (316)
T KOG0224|consen 110 KFPVYVLAQFIGAFLGAATVYGLYY 134 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876555443
No 29
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.10 E-value=1.4e-10 Score=104.48 Aligned_cols=102 Identities=29% Similarity=0.335 Sum_probs=85.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhheecccC--ccC---chhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CC
Q 046511 167 SVNTGQAFALEFLITFNLLFVVTAVATDTR--AVG---ELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NY 240 (282)
Q Consensus 167 ~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~--~~~---~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~ 240 (282)
+.+..|.++.||++|++++|.-+..+.... ... ....+..|+++++.+++.+.+||+++|||.+++-.+... ++
T Consensus 7 ~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl 86 (238)
T KOG0223|consen 7 SVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISL 86 (238)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcH
Confidence 457889999999999999998776532222 111 235789999999999999999999999999999999976 57
Q ss_pred CceeeeeehhhHHHHHHHHHHHHhhcCC
Q 046511 241 EKLWIFLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 241 ~~~wvY~v~P~lGailaa~ly~~l~~~~ 268 (282)
.....||++|++|+++|+.+-+.+...+
T Consensus 87 ~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 87 FRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred HHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 7889999999999999999999887764
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.05 E-value=9.7e-11 Score=104.44 Aligned_cols=100 Identities=27% Similarity=0.367 Sum_probs=80.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhhheec--ccCc-c------Cc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHh
Q 046511 168 VNTGQAFALEFLITFNLLFVVTAVAT--DTRA-V------GE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVA 236 (282)
Q Consensus 168 ~s~~~~~~~E~i~Tf~Lv~~v~~~~~--d~~~-~------~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~ 236 (282)
.+..+.++.|+++|+++++....... ++.. . .. ...+..|+.+.+.+++.+++||+++|||.+++..+.
T Consensus 5 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~ 84 (227)
T PF00230_consen 5 PSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALT 84 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeee
Confidence 45788999999999999987665321 1111 1 01 245667899999999999999999999999999999
Q ss_pred cc-CCCceeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 237 AG-NYEKLWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 237 ~~-~~~~~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
+. +|....+|+++|++|+++|+.+.+.++.+
T Consensus 85 g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 116 (227)
T PF00230_consen 85 GRISWKKAIVYIIAQFLGAFLGALLVYALYPD 116 (227)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred eeecccceeeEEeeccccccccccchhhcccC
Confidence 76 68888999999999999999998887765
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=85.71 E-value=6.5 Score=36.28 Aligned_cols=146 Identities=17% Similarity=0.157 Sum_probs=80.2
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhcc----ccCCCcc------cc----ccchhHHHHHHHHHHHHHHH
Q 046511 121 AFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHP----FMSGGVT------VP----SVNTGQAFALEFLITFNLLF 186 (282)
Q Consensus 121 a~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~----~~~~~~t------~p----~~s~~~~~~~E~i~Tf~Lv~ 186 (282)
.-...|+++|.+.+--++-=.+|=++|++++..+++- ...++.. .. +.+..+.|+--+++.++..+
T Consensus 95 ~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVcl 174 (265)
T COG2116 95 VGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCL 174 (265)
T ss_pred HHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccchhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 3456788999999888877788888888776655511 1111111 00 34668888888888888888
Q ss_pred hhhheecccCccCchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc--CCCc-----eeeeeehhhHH-HHHHH
Q 046511 187 VVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG--NYEK-----LWIFLLAPTLG-ALAGA 258 (282)
Q Consensus 187 ~v~~~~~d~~~~~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~--~~~~-----~wvY~v~P~lG-ailaa 258 (282)
.++..-.-+.. .-.-+.+-+.|+ .++...+.-...|-..-.-.+...+ +|.+ +-.-.+|.++| +++-+
T Consensus 175 Avwm~~~~k~~--~~K~~~m~~pv~--~Fv~~GfeH~VANm~~i~~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vg 250 (265)
T COG2116 175 AVWMSYSAKDG--AAKIFAIILPVM--LFVASGFEHSVANMFMIPWAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVG 250 (265)
T ss_pred HHHHHhcccch--hhHHHHHHHHHH--HHHHcCCceeeehHHHHHHHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhh
Confidence 77764211111 112233333333 3444455545566332211222222 2333 11224566665 66778
Q ss_pred HHHHHhhcCCCC
Q 046511 259 TTYTVVKLRDNE 270 (282)
Q Consensus 259 ~ly~~l~~~~~~ 270 (282)
+.|.++++++++
T Consensus 251 l~Y~~~~~~~~~ 262 (265)
T COG2116 251 LMYWYLYRKQNR 262 (265)
T ss_pred HHHHHhcccccc
Confidence 888888766544
No 32
>PRK11562 nitrite transporter NirC; Provisional
Probab=77.70 E-value=9.4 Score=35.28 Aligned_cols=150 Identities=12% Similarity=0.008 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhcc---ccCC--Ccc---c----cccchhHHHHHHHHHHHHH
Q 046511 117 SLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHP---FMSG--GVT---V----PSVNTGQAFALEFLITFNL 184 (282)
Q Consensus 117 AVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~---~~~~--~~t---~----p~~s~~~~~~~E~i~Tf~L 184 (282)
.+...-++.||.+|++.+-.+.-=.+|=++|++++-.++.. .... ... . -+.+..+.|+-=+++.++.
T Consensus 85 ~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~gI~CNwLV 164 (268)
T PRK11562 85 MFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALCNWLV 164 (268)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33334567888999888877777777777776665443221 1110 000 0 1456778888888888888
Q ss_pred HHhhhheecccCccCchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccC-----C----CceeeeeehhhHHH-
Q 046511 185 LFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGN-----Y----EKLWIFLLAPTLGA- 254 (282)
Q Consensus 185 v~~v~~~~~d~~~~~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~-----~----~~~wvY~v~P~lGa- 254 (282)
.+.++... ..+..+.. +.+-+.+++.+ ...+.-...|= --+...+.... | +++-.-.+|.++|+
T Consensus 165 clavw~~~-~~~~~gKi--~~i~~pI~~Fv--~~GFEH~IANm-~~~~l~~~~~~~~~~~~~~~~~nlipvtLGNivGG~ 238 (268)
T PRK11562 165 CLAIWMAI-RTEGAAKF--IAIWWCLLAFI--ASGYEHSVANM-TLFALSWFGHHSEAYTLAGIGHNLLWVTLGNTLSGA 238 (268)
T ss_pred HHHHHHHH-hccccchh--HHHHHHHHHHH--HcCCcchhHhH-HHHHHHHHccCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88776542 22222222 22222333222 23333334452 22322333221 1 12223467888887
Q ss_pred HHHHHHHHHhhcCCCCCC
Q 046511 255 LAGATTYTVVKLRDNETD 272 (282)
Q Consensus 255 ilaa~ly~~l~~~~~~~~ 272 (282)
++-++.|.+++.++.+.+
T Consensus 239 v~vg~~y~~~~~~~~~~~ 256 (268)
T PRK11562 239 VFMGLGYWYATPKANRPV 256 (268)
T ss_pred HHHHHHHHHHhCCCcCch
Confidence 677788888876655433
No 33
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=72.32 E-value=14 Score=37.55 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=71.7
Q ss_pred cchHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhccccCCCccccccchhHHHHHHHHHHHHHHHhhhheec
Q 046511 114 LNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVAT 193 (282)
Q Consensus 114 ~NPAVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~ 193 (282)
+..+|+.+++....-|.+....++...++|+.+|.+..+.++|.. +.+ .++...+...+.+.....
T Consensus 370 ~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~----------~~f----~~L~l~l~~~l~~~~~~~ 435 (650)
T PF04632_consen 370 MMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHL----------DGF----PLLALVLAPFLFLGGLLM 435 (650)
T ss_pred HHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----------CcH----HHHHHHHHHHHHHHHHHH
Confidence 334555565666667888888999999999999999988887642 211 222222222222222111
Q ss_pred ccCccCchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511 194 DTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNE 270 (282)
Q Consensus 194 d~~~~~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~ 270 (282)
. .+....+.+++.+....+. ++......|++.-+-. .++-++|.+++.+.|+++.+.+.+
T Consensus 436 ~---~p~~~~~g~~~~v~f~~~~-~~~n~~~~d~~~f~n~-------------~la~l~G~~~a~l~~~li~p~~~~ 495 (650)
T PF04632_consen 436 A---RPRTAYIGLGFAVFFLLLL-GPGNPYSYDFATFLNR-------------ALAILLGIVIAALVFRLIRPFSPE 495 (650)
T ss_pred c---CchHHHHHHHHHHHHHHHh-cCCCCCCCCHHHHHHH-------------HHHHHHHHHHHHHHHHHHCCCChh
Confidence 1 1233445555555543333 2222344444432211 467788999999999988765544
No 34
>PRK09713 focB putative formate transporter; Provisional
Probab=69.12 E-value=93 Score=28.95 Aligned_cols=69 Identities=6% Similarity=0.037 Sum_probs=40.9
Q ss_pred HHhcCCCcchhhHHHH----HHHHHHHHHHHHHHHhhccccCCCc----------cccccchhHHHHHHHHHHHHHHHhh
Q 046511 123 AALRHFPWVQVPAYIM----AQVSASICASFALKAVFHPFMSGGV----------TVPSVNTGQAFALEFLITFNLLFVV 188 (282)
Q Consensus 123 ~l~g~~~~~~~~~Yi~----aQ~lGa~~ga~l~~~~~~~~~~~~~----------t~p~~s~~~~~~~E~i~Tf~Lv~~v 188 (282)
...||.+|++.+-.+. .-++|+++-+.+++..-.-...... ..-+.+.++.|+--+++.++..+.+
T Consensus 99 ~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV 178 (282)
T PRK09713 99 KSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMWGVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLAL 178 (282)
T ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 5688999988885544 4455554444443321110000110 0014678899998999999998888
Q ss_pred hhe
Q 046511 189 TAV 191 (282)
Q Consensus 189 ~~~ 191 (282)
+..
T Consensus 179 ~~~ 181 (282)
T PRK09713 179 WMS 181 (282)
T ss_pred HHH
Confidence 753
No 35
>PRK10805 formate transporter; Provisional
Probab=68.99 E-value=67 Score=29.89 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=44.5
Q ss_pred chHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhc-c-cc--CCCc------cc----cccchhHHHHHHHHH
Q 046511 115 NPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFH-P-FM--SGGV------TV----PSVNTGQAFALEFLI 180 (282)
Q Consensus 115 NPAVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~-~-~~--~~~~------t~----p~~s~~~~~~~E~i~ 180 (282)
|-..+++ .+.||.+|.+.+-.+.-=.+|=++|++++-.+.. . .. ..+. .. -+.+.++.|+-=+++
T Consensus 93 n~l~~~~-~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~~~~~~~~~a~~K~~~~~~~~f~~gI~C 171 (285)
T PRK10805 93 TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHTFIEAVCLGILA 171 (285)
T ss_pred hHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5455544 6888999999885555555555555544332221 1 00 0010 00 145788888888888
Q ss_pred HHHHHHhhhhe
Q 046511 181 TFNLLFVVTAV 191 (282)
Q Consensus 181 Tf~Lv~~v~~~ 191 (282)
.++..+.++..
T Consensus 172 N~lVclaV~~~ 182 (285)
T PRK10805 172 NLMVCLAVWMS 182 (285)
T ss_pred HHHHHHHHHHH
Confidence 88888887753
No 36
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=40.08 E-value=2.8e+02 Score=24.91 Aligned_cols=76 Identities=11% Similarity=0.074 Sum_probs=46.7
Q ss_pred chHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhcc--c-cC-C-Cc---------cccccchhHHHHHHHHH
Q 046511 115 NPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHP--F-MS-G-GV---------TVPSVNTGQAFALEFLI 180 (282)
Q Consensus 115 NPAVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~--~-~~-~-~~---------t~p~~s~~~~~~~E~i~ 180 (282)
|-.....-++.||.+|.+.+-.+.-=.+|=++|+.+.-.+... . .. . .. ..-+.+..+.|+-=+++
T Consensus 68 n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~~~~~~~a~~K~~~~~~~~f~~gilc 147 (239)
T TIGR00790 68 NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWGVGSLAIAEHKAHHTFVEAFFLGILC 147 (239)
T ss_pred chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 3344444467889999998877777777777766655443211 0 00 1 00 01145788888888888
Q ss_pred HHHHHHhhhh
Q 046511 181 TFNLLFVVTA 190 (282)
Q Consensus 181 Tf~Lv~~v~~ 190 (282)
.+++.+.+..
T Consensus 148 n~lV~lav~~ 157 (239)
T TIGR00790 148 NWLVCLAVWM 157 (239)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 37
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=39.81 E-value=94 Score=29.18 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=25.1
Q ss_pred CcCccCh---hhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHH
Q 046511 221 SGGSMNP---VRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTV 263 (282)
Q Consensus 221 tG~~lNP---Ar~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~ 263 (282)
.+-++|| +|++..+++.+.| .|++|++-..=+++.-.+...
T Consensus 223 ~l~~~G~~a~~~a~~~al~gg~~--a~~fwiGV~giGliiplll~~ 266 (305)
T COG3301 223 VLLSLGGVAAARALATALAGGFW--AWVFWIGVLGLGLIIPLLLKF 266 (305)
T ss_pred HHHHhCcHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHhh
Confidence 3445666 4888888888877 678887544333444443333
No 38
>PHA00404 hypothetical protein
Probab=38.35 E-value=11 Score=24.41 Aligned_cols=27 Identities=26% Similarity=0.078 Sum_probs=21.3
Q ss_pred CCCCCcCccccccCCcccccccCCCCc
Q 046511 18 GTPGGALMSAARVDSLSYERQAKSGFK 44 (282)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (282)
+||-.||-.++|+.+....|++..+-.
T Consensus 2 ~t~irpls~slrk~ssg~~rr~s~rvt 28 (42)
T PHA00404 2 VTPIRPLSPSLRKRSSGRFRRWSSRVT 28 (42)
T ss_pred CcccccCChhhcccCCCcceeeeccee
Confidence 578889999999998888777654443
No 39
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=37.39 E-value=1.8e+02 Score=26.44 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=50.7
Q ss_pred cchHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhccc--cC-CCc----------cccccchhHHHHHHHHH
Q 046511 114 LNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPF--MS-GGV----------TVPSVNTGQAFALEFLI 180 (282)
Q Consensus 114 ~NPAVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~--~~-~~~----------t~p~~s~~~~~~~E~i~ 180 (282)
=|-.+...-++.||.+|++.+--+.-=.+|=++|+++.-.+.... .. .+. ..-+.+.++.|+-=+++
T Consensus 81 gn~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~~~~~~~~~a~~K~~~~~~~~f~~gI~c 160 (250)
T PF01226_consen 81 GNMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPAMGEYLISVAEHKVSHTFWELFFRGILC 160 (250)
T ss_dssp TTCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTHHHHHHHHHHHCCSSS-HHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 355666666888999999988777766777777766554433211 11 110 01145788888888899
Q ss_pred HHHHHHhhhhe
Q 046511 181 TFNLLFVVTAV 191 (282)
Q Consensus 181 Tf~Lv~~v~~~ 191 (282)
.++..+.++..
T Consensus 161 N~lVclav~~~ 171 (250)
T PF01226_consen 161 NWLVCLAVWLA 171 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888765
No 40
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=33.45 E-value=2.4e+02 Score=29.74 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=21.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhc
Q 046511 130 WVQVPAYIMAQVSASICASFALKAVFH 156 (282)
Q Consensus 130 ~~~~~~Yi~aQ~lGa~~ga~l~~~~~~ 156 (282)
..|....++.+++|+++|.++...+.+
T Consensus 395 ~sRa~~RiiGTliGallA~ll~v~l~P 421 (683)
T PRK11427 395 YQKMVLRFGGAFCGAILALLFTLLVMP 421 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457777889999999999888877664
No 41
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=28.40 E-value=2e+02 Score=24.34 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCchhhhhhhhccchHHHHHHHHhcCC--CcchhhHHHHHHHHHHHHHH
Q 046511 71 SLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAASHLNPSLTIAFAALRHF--PWVQVPAYIMAQVSASICAS 148 (282)
Q Consensus 71 ~l~r~~~aEflGT~ilvf~g~~s~~~~~~~~~~~~~~g~s~aH~NPAVTla~~l~g~~--~~~~~~~Yi~aQ~lGa~~ga 148 (282)
+++-.+++|.+||-++=-.. +.=++-++.|+- .+.-.+.+..+-+.|+++|.
T Consensus 88 k~~~a~lGEviGTGiIGal~--------------------------sypva~~~~g~~~~~~~~v~~F~~St~~Ga~ig~ 141 (150)
T PF09512_consen 88 KLWAAALGEVIGTGIIGALL--------------------------SYPVAKLFMGKEAALFFFVPPFLISTLIGAIIGY 141 (150)
T ss_pred cchHHHHHHHHhhHHHHHHH--------------------------HHHHHHHHhCCchhhhhhHHHHHHHHHHHHHHHH
Confidence 45667889999998764332 112223333321 25556777788888888888
Q ss_pred HHHHHhh
Q 046511 149 FALKAVF 155 (282)
Q Consensus 149 ~l~~~~~ 155 (282)
.+++.+.
T Consensus 142 ~~l~~L~ 148 (150)
T PF09512_consen 142 ILLKALK 148 (150)
T ss_pred HHHHHHh
Confidence 8777653
No 42
>PF02537 CRCB: CrcB-like protein; InterPro: IPR003691 Three genes, crcA, cspE and crcB when present in high copy confer camphor resistance on a cell and suppress mutations in the chromosomal partition gene mukB in Escherichia coli. The cspE gene has been previously identified as a cold shock-like protein with homologues in all organisms tested []. Camphor and mukB mutations may interfere with chromosome condensation and high copy crcA, cspE and crcB have been implicated as promoting or protecting chromosome folding [].; GO: 0016020 membrane
Probab=25.36 E-value=3.3e+02 Score=21.20 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCch----hhhhhhh--ccchHHHHHHHHhcCCCcchhhHHHHHHHHHHH
Q 046511 72 LTRKVGAEFVGTFILIFAATAGPIVNQKYSGAET----LIGNAAS--HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASI 145 (282)
Q Consensus 72 l~r~~~aEflGT~ilvf~g~~s~~~~~~~~~~~~----~~g~s~a--H~NPAVTla~~l~g~~~~~~~~~Yi~aQ~lGa~ 145 (282)
.+--+++-.+|++++-++................ ..|+.++ -+-=-+.-..-+.++-.+.+...|.+.++.+++
T Consensus 30 p~gt~~vN~~g~fllG~~~~~~~~~~~~~~~~~~~~~l~~Gf~G~lTTfSt~~~e~~~l~~~~~~~~~~~y~~~s~~~g~ 109 (117)
T PF02537_consen 30 PWGTLLVNVLGCFLLGLLAGLLAKKLASKWSPSLRLFLGTGFCGGLTTFSTFILETFQLFESGRWFRALLYVLVSVILGL 109 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3455777888888887765432211011111111 1344333 111111112223344588999999999999999
Q ss_pred HHHHHHH
Q 046511 146 CASFALK 152 (282)
Q Consensus 146 ~ga~l~~ 152 (282)
+++.+.+
T Consensus 110 ~~~~~G~ 116 (117)
T PF02537_consen 110 LAAWLGY 116 (117)
T ss_pred HHHHHHH
Confidence 9887654
No 43
>PF02537 CRCB: CrcB-like protein; InterPro: IPR003691 Three genes, crcA, cspE and crcB when present in high copy confer camphor resistance on a cell and suppress mutations in the chromosomal partition gene mukB in Escherichia coli. The cspE gene has been previously identified as a cold shock-like protein with homologues in all organisms tested []. Camphor and mukB mutations may interfere with chromosome condensation and high copy crcA, cspE and crcB have been implicated as promoting or protecting chromosome folding [].; GO: 0016020 membrane
Probab=24.58 E-value=2.7e+02 Score=21.68 Aligned_cols=110 Identities=10% Similarity=-0.035 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhccccCCCccccccchhHHHHHHHHHHHHHHHhhhheecccCccCchhhHHHHHHHHHHHHHhcCC
Q 046511 141 VSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPS 220 (282)
Q Consensus 141 ~lGa~~ga~l~~~~~~~~~~~~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~~~~~~l~iGl~V~~~~~~~g~~ 220 (282)
.+|+.+|+++=|.+-.-... .++...+..++..++++|++-++......+. .......+..++.+..+ |..
T Consensus 5 ~lgg~~Ga~~R~~l~~~~~~----~~~~~p~gt~~vN~~g~fllG~~~~~~~~~~-~~~~~~~~~~~l~~Gf~----G~l 75 (117)
T PF02537_consen 5 ALGGALGALLRYGLSKLLNR----RWGWFPWGTLLVNVLGCFLLGLLAGLLAKKL-ASKWSPSLRLFLGTGFC----GGL 75 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcc----ccCCCchHHHHHHHHHHHHHHHHHHHHHHhc-cccCCHHHHHHHHHHHc----chH
Confidence 57888888776654322110 0111256678999999999988765432211 11111223333333321 111
Q ss_pred CcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHH
Q 046511 221 SGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATT 260 (282)
Q Consensus 221 tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~l 260 (282)
|--| --+.+.....-.+++.....|.+..++++++++.+
T Consensus 76 TTfS-t~~~e~~~l~~~~~~~~~~~y~~~s~~~g~~~~~~ 114 (117)
T PF02537_consen 76 TTFS-TFILETFQLFESGRWFRALLYVLVSVILGLLAAWL 114 (117)
T ss_pred HHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 00111111222345667788999888888887654
No 44
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=23.16 E-value=2.8e+02 Score=26.44 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=19.3
Q ss_pred eeehhhHHHHHHHHHHHHhhcCC
Q 046511 246 FLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 246 Y~v~P~lGailaa~ly~~l~~~~ 268 (282)
+++.|++|..++.++|++++..-
T Consensus 139 wvlsPii~~~ia~~l~~~~~~~~ 161 (326)
T COG0306 139 WVLSPILGGVLAYLLYSLLRRLI 161 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999886543
No 45
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=20.99 E-value=7e+02 Score=23.45 Aligned_cols=20 Identities=10% Similarity=0.401 Sum_probs=17.6
Q ss_pred eehhhHHHHHHHHHHHHhhc
Q 046511 247 LLAPTLGALAGATTYTVVKL 266 (282)
Q Consensus 247 ~v~P~lGailaa~ly~~l~~ 266 (282)
++.|++|.+++.++|+++..
T Consensus 127 v~sPlia~~~a~~l~~~~~~ 146 (326)
T PF01384_consen 127 VISPLIAFILAYILYRLIRR 146 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998754
No 46
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=20.59 E-value=52 Score=25.87 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=15.9
Q ss_pred hhhccchHHHHHHHHhcCC
Q 046511 110 AASHLNPSLTIAFAALRHF 128 (282)
Q Consensus 110 s~aH~NPAVTla~~l~g~~ 128 (282)
+.||+||.+.++..+.++-
T Consensus 8 t~Ghv~P~lala~~L~~rG 26 (139)
T PF03033_consen 8 TRGHVYPFLALARALRRRG 26 (139)
T ss_dssp SHHHHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHhccC
Confidence 3569999999999998763
Done!